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Opened 19 months ago
Closed 19 months ago
#14970 closed defect (can't reproduce)
Crash in QTabBar:paintEvent(). QPainter::begin: Paint device returned engine == 0, type: 3
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000000324e67000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000323e64000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000322e61000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000321e5e000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000320e5b000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000031fe58000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000031ee55000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000031de52000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000031ce4f000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000031be4c000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000000031ae49000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000319e46000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000000318e43000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x0000000204586240 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2024-04-17 19:11:11.00 +0200","app_version":"1.6.1","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.3.1 (23D60)","roots_installed":0,"name":"ChimeraX","incident_id":"21D474CA-306F-41FC-B604-20E7D2D8C06E"}
{
"uptime" : 1300000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,1",
"coalitionID" : 230639,
"osVersion" : {
"train" : "macOS 14.3.1",
"build" : "23D60",
"releaseType" : "User"
},
"captureTime" : "2024-04-17 18:29:28.1389 +0200",
"codeSigningMonitor" : 1,
"incident" : "21D474CA-306F-41FC-B604-20E7D2D8C06E",
"pid" : 24084,
"translated" : true,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-04-17 16:25:51.4503 +0200",
"procStartAbsTime" : 33345609699000,
"procExitAbsTime" : 33523608044571,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"9550DBF0-DC1E-5AB0-81FB-E3F4CE21409E","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "14C998C3-1AA5-72F8-4832-A833B8517703",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 15219,
"sleepWakeUUID" : "B0C2B993-45F1-4B3B-B82F-4F4F9D7BA8D5",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 140723103432680\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca6978000-7ffccf728000 [653.7M] r-x\/r-x SM=COW ...t_id=8eef92bb",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":24084},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 140723103432680\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca6978000-7ffccf728000 [653.7M] r-x\/r-x SM=COW ...t_id=8eef92bb",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":15765584944734910341},"r12":{"value":259},"rosetta":{"tmp2":{"value":140703412938648},"tmp1":{"value":140705834822220},"tmp0":{"value":18446744073709551615}},"rbx":{"value":8662835776,"symbolLocation":0,"symbol":"_main_thread"},"r8":{"value":1396816894187417},"r15":{"value":22},"r10":{"value":8662835776,"symbolLocation":0,"symbol":"_main_thread"},"rdx":{"value":0},"rdi":{"value":15765584944734910341},"r9":{"value":15765584944734910341},"r13":{"value":0},"rflags":{"value":647},"rax":{"value":0},"rsp":{"value":4504834184},"r11":{"value":140703413805339,"symbolLocation":0,"symbol":"-[__NSCFArray 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"reportNotes" : [
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]
}
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 1F8A, 1PIN, 1ZCN, 2F21, 2ITK, 2Q5A, 2XP3, 2XP4, 2XP5, 2XP6, 2XP7, 2XP8,
> 2XP9, 2XPA, 2XPB, 2ZQS, 2ZQT, 2ZQU, 2ZQV, 2ZR4, 2ZR5, 2ZR6, 3I6C, 3IK8,
> 3IKD, 3IKG, 3JYJ, 3KAB, 3KAC, 3KAD, 3KAF, 3KAG, 3KAH, 3KAI, 3KCE, 3NTP,
> 3ODK, 3OOB, 3TC5, 3TCZ, 3TDB, 3WH0, 4GWT, 4GWV, 4QIB, 4TNS, 4TYO, 4U84,
> 4U85, 4U86, 5B3W, 5B3X, 5B3Y, 5B3Z, 5BMY, 5UY9, 5VTI, 5VTJ, 5VTK, 6DUN,
> 6O33, 6O34, 6VAJ, 7AOG, 7AXN, 7AYF, 7AZ1, 7AZ2, 7BDP, 7BDT, 7BDY, 7BFW,
> 7BG3, 7BGQ, 7BGR, 7BGV, 7BGW, 7EFJ, 7EFX, 7EKV, 7F0M, 7NIF, 7NIG, 7NJ6,
> 7NJ8, 7NJA, 7NRK, 7NRL, 7OQ9, 7OQA, 8C2G, 8C3C
'1F8A,' has no suffix
> open 1F8A, 1PIN, 1ZCN, 2F21, 2ITK, 2Q5A, 2XP3, 2XP4, 2XP5, 2XP6, 2XP7, 2XP8,
> 2XP9, 2XPA, 2XPB, 2ZQS, 2ZQT, 2ZQU, 2ZQV, 2ZR4, 2ZR5, 2ZR6, 3I6C, 3IK8,
> 3IKD, 3IKG, 3JYJ, 3KAB, 3KAC, 3KAD, 3KAF, 3KAG, 3KAH, 3KAI, 3KCE, 3NTP,
> 3ODK, 3OOB, 3TC5, 3TCZ, 3TDB, 3WH0, 4GWT, 4GWV, 4QIB, 4TNS, 4TYO, 4U84,
> 4U85, 4U86, 5B3W, 5B3X, 5B3Y, 5B3Z, 5BMY, 5UY9, 5VTI, 5VTJ, 5VTK, 6DUN,
> 6O33, 6O34, 6VAJ, 7AOG, 7AXN, 7AYF, 7AZ1, 7AZ2, 7BDP, 7BDT, 7BDY, 7BFW,
> 7BG3, 7BGQ, 7BGR, 7BGV, 7BGW, 7EFJ, 7EFX, 7EKV, 7F0M, 7NIF, 7NIG, 7NJ6,
> 7NJ8, 7NJA, 7NRK, 7NRL, 7OQ9, 7OQA, 8C2G, 8C3C
'1F8A,' has no suffix
> open 1f8a.pdb
No such file/path: 1f8a.pdb
> open pdb 1f8a
'pdb' has no suffix
> open pdb 1f8a.pdb
'pdb' has no suffix
> fetch 7nif
Unknown command: fetch 7nif
> open 1stp
**** TomG: Deleted several thousand lines to stay within Trac limit ****
---
CA — calcium ion
CL — chloride ion
S6B — 3-chloranyl-4-imidazol-1-yl-benzaldehyde
7axn mmCIF Assemblies
---
1| author_and_software_defined_assembly
7ayf title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound TCF521-110 [more
info...]
Chain information for 7ayf #66
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7ayf #66
---
CA — calcium ion
S9E — 6-(2-bromanylimidazol-1-yl)pyridine-3-carbaldehyde
7ayf mmCIF Assemblies
---
1| author_and_software_defined_assembly
7az1 title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1013 [more
info...]
Chain information for 7az1 #67
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7az1 #67
---
CA — calcium ion
CL — chloride ion
SGH — 1-[4-methyl-3-(trifluoromethyl)phenyl]-2-phenyl-imidazole
7az1 mmCIF Assemblies
---
1| author_and_software_defined_assembly
7az2 title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1014 [more
info...]
Chain information for 7az2 #68
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN
116-132
Non-standard residues in 7az2 #68
---
CA — calcium ion
CL — chloride ion
SFW — 1-[4-methyl-2-(trifluoromethyl)phenyl]-2-phenyl-imidazole
7az2 mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bdp title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1017 [more
info...]
Chain information for 7bdp #69
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bdp #69
---
MG — magnesium ion
TJB — 2-chloranyl-4-(2-phenylimidazol-1-yl)benzaldehyde (LvD1017)
7bdp mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bdt title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1009 [more
info...]
Chain information for 7bdt #70
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bdt #70
---
MG — magnesium ion
TJ8 — 2-bromanyl-4-(2-phenylimidazol-1-yl)benzaldehyde (LvD1009)
7bdt mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bdy title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound PC2068B [more
info...]
Chain information for 7bdy #71
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bdy #71
---
CA — calcium ion
CL — chloride ion
MG — magnesium ion
TJK — 2-bromanyl-4-[2-(5-bromanyl-2-fluoranyl-
phenyl)imidazol-1-yl]benzaldehyde (PC2068B)
7bdy mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bfw title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound PC2068A [more
info...]
Chain information for 7bfw #72
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bfw #72
---
CA — calcium ion
CL — chloride ion
TKH — [4-[2-[2,4-bis(fluoranyl)phenyl]imidazol-1-yl]-2-bromanyl-
phenyl]methanol
7bfw mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bg3 title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound PC2046 [more
info...]
Chain information for 7bg3 #73
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bg3 #73
---
CA — calcium ion
CL — chloride ion
TKK — 1-(3-bromanyl-4-methyl-phenyl)-2-(2-bromophenyl)imidazole
7bg3 mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bgq title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1019 [more
info...]
Chain information for 7bgq #74
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bgq #74
---
CA — calcium ion
CL — chloride ion
TL8 — 2-methoxy-4-(2-phenylimidazol-1-yl)benzaldehyde
7bgq mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bgr title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1016 [more
info...]
Chain information for 7bgr #75
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bgr #75
---
CA — calcium ion
CL — chloride ion
TQK — 2-methyl-4-(2-phenylimidazol-1-yl)benzaldehyde
7bgr mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bgv title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1012 [more
info...]
Chain information for 7bgv #76
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bgv #76
---
CA — calcium ion
CL — chloride ion
MG — magnesium ion
TLK — 3-methoxy-4-(2-phenylimidazol-1-yl)benzaldehyde
7bgv mmCIF Assemblies
---
1| author_and_software_defined_assembly
7bgw title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1011 [more
info...]
Chain information for 7bgw #77
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7bgw #77
---
CA — calcium ion
CL — chloride ion
NA — sodium ion
TLQ — 4-(2-phenylimidazol-1-yl)naphthalene-1-carbaldehyde
7bgw mmCIF Assemblies
---
1| author_and_software_defined_assembly
7efj title:
Crystal Structure Analysis of human PIN1 [more info...]
Chain information for 7efj #78
---
Chain | Description | UniProt
A | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 1-163
Non-standard residues in 7efj #78
---
J2C —
8-(2-chloroacetyl)-4-(furan-2-ylmethyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one
PE8 — 3,6,9,12,15,18,21-heptaoxatricosane-1,23-diol
7efx title:
Crystal Structure of human PIN1 complexed with covalent inhibitor [more
info...]
Chain information for 7efx #79
---
Chain | Description | UniProt
A | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 1-163
Non-standard residues in 7efx #79
---
J3X —
4-((5-bromofuran-2-yl)methyl)-8-(2-chloroacetyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one
7ekv title:
Crystal Structure of human Pin1 complexed with a covalent inhibitor [more
info...]
Chain information for 7ekv #80
---
Chain | Description | UniProt
A | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 1-163
Non-standard residues in 7ekv #80
---
J50 —
8-(2-chloroacetyl)-4-((5-phenylfuran-2-yl)methyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one
PE8 — 3,6,9,12,15,18,21-heptaoxatricosane-1,23-diol
7f0m title:
Crystal Structure of human Pin1 complexed with a potent covalent inhibitor
[more info...]
Chain information for 7f0m #81
---
Chain | Description | UniProt
A B C D | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN
1-163
Non-standard residues in 7f0m #81
---
0BF —
8-(2-chloranylethanoyl)-4-[(5-naphthalen-1-ylfuran-2-yl)methyl]-1-thia-4,8-diazaspiro[4.5]decan-3-one
P33 — 3,6,9,12,15,18-hexaoxaicosane-1,20-diol (heptaethylene glycol; PEG330)
7f0m mmCIF Assemblies
---
1| author_defined_assembly
2| author_defined_assembly
3| author_defined_assembly
4| author_defined_assembly
7nif title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound TCF521-011 [more
info...]
Chain information for 7nif #82
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7nif #82
---
CA — calcium ion
CL — chloride ion
P5N — 1-(4-methylphenyl)imidazole
7nif mmCIF Assemblies
---
1| author_and_software_defined_assembly
7nig title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1008 [more
info...]
Chain information for 7nig #83
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7nig #83
---
CA — calcium ion
CL — chloride ion
UFH — 2-bromanyl-4-imidazol-1-yl-benzaldehyde
7nig mmCIF Assemblies
---
1| author_and_software_defined_assembly
7nj6 title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1005 [more
info...]
Chain information for 7nj6 #93
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7nj6 #93
---
CA — calcium ion
UG5 — 4-[4-(trifluoromethyl)imidazol-1-yl]benzaldehyde
7nj6 mmCIF Assemblies
---
1| author_and_software_defined_assembly
7nj8 title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1007 [more
info...]
Chain information for 7nj8 #94
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7nj8 #94
---
CA — calcium ion
JFS — [4-(1H-benzimidazol-1-yl)phenyl]methanol
MG — magnesium ion
7nj8 mmCIF Assemblies
---
1| author_and_software_defined_assembly
7nja title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1006 [more
info...]
Chain information for 7nja #95
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7nja #95
---
CL — chloride ion
UG2 — [4-(2-phenylimidazol-1-yl)phenyl]methanol
7nja mmCIF Assemblies
---
1| author_and_software_defined_assembly
7nrk title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1002F1 [more
info...]
Chain information for 7nrk #96
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7nrk #96
---
CA — calcium ion
CL — chloride ion
PEG — di(hydroxyethyl)ether
UPQ — 4-(4-methylimidazol-1-yl)benzaldehyde
7nrk mmCIF Assemblies
---
1| author_defined_assembly
7nrl title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound LvD1032 [more
info...]
Chain information for 7nrl #97
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7nrl #97
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
MG — magnesium ion
PEG — di(hydroxyethyl)ether
UPK — 2-(hydroxymethyl)-5-(2-phenylimidazol-1-yl)phenol
7nrl mmCIF Assemblies
---
1| author_defined_assembly
7oq9 title:
Ternary complex of 14-3-3 sigma, Pin1pS72 phosphopeptide, and WQ136 [more
info...]
Chain information for 7oq9 #98
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7oq9 #98
---
0AW — ~{N}-[(5-carbamimidoyl-3-phenyl-
thiophen-2-yl)methyl]-2,3-dihydro-1-benzofuran-5-carboxamide
CL — chloride ion
7oq9 mmCIF Assemblies
---
1| author_and_software_defined_assembly
7oqa title:
Ternary complex of 14-3-3 sigma, Pin1pS72 phosphopeptide, and WQ162 [more
info...]
Chain information for 7oqa #99
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-248
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 7oqa #99
---
09W — ~{N}-[(5-carbamimidoyl-3-phenyl-
thiophen-2-yl)methyl]-2,3-dihydro-1-benzofuran-7-carboxamide
CL — chloride ion
7oqa mmCIF Assemblies
---
1| author_and_software_defined_assembly
8c2g title:
14-3-3 σ with Pin1 binding site pS72 and covalently bound CV1040 [more
info...]
Chain information for 8c2g #100
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-231
P | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN
116-132
Non-standard residues in 8c2g #100
---
MG — magnesium ion
T85 — 2-iodanyl-4-(2-phenylimidazol-1-yl)benzaldehyde
8c2g mmCIF Assemblies
---
1| author_and_software_defined_assembly
8c3c title:
14-3-3 σ with Pin1 binding site pS72 and bound Fusicoccin A [more info...]
Chain information for 8c3c #101
---
Chain | Description | UniProt
A | 14-3-3 protein sigma | 1433S_HUMAN 1-231
B | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 61-77
Non-standard residues in 8c3c #101
---
FSC — fusicoccin
MG — magnesium ion
8c3c mmCIF Assemblies
---
1| author_and_software_defined_assembly
> close #64-77
> close #82-101
> close #51-54
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX.cxs
> select #56/B
65 atoms, 64 bonds, 9 residues, 1 model selected
> select add #56
1337 atoms, 1280 bonds, 1 pseudobond, 236 residues, 2 models selected
> select subtract #56
Nothing selected
> select add #56
1337 atoms, 1280 bonds, 1 pseudobond, 236 residues, 2 models selected
> select subtract #56
Nothing selected
> select #5/B
49 atoms, 51 bonds, 6 residues, 1 model selected
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> select #9/A
1314 atoms, 1219 bonds, 1 pseudobond, 267 residues, 2 models selected
> select #55/A
3349 atoms, 3077 bonds, 732 residues, 1 model selected
> select add #55
3372 atoms, 3101 bonds, 734 residues, 1 model selected
> hide #55 models
> show #55 models
> hide #55 models
> show #55 models
> hide #55 models
> show #55 models
> hide #55 models
> show #55 models
> close #55
> select .a
Expected an objects specifier or a keyword
> select #1:.a
Expected an objects specifier or a keyword
> select #1:/a
Expected an objects specifier or a keyword
> select #1:\a
Nothing selected
> select #1:113\a
Nothing selected
> select #1:113aa
Nothing selected
> select #1:113.a
Expected an objects specifier or a keyword
> select #1:/A
Expected an objects specifier or a keyword
> select #1:113/A
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1:*/A
1446 atoms, 1322 bonds, 1 pseudobond, 314 residues, 2 models selected
> show #!1 target m
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX.cxs
> hide #23-27,29,43-44,46-47,57-60#!2-22,28,30-42,45,48-50,56,61-63,78-81
> target m
> show #!50 models
> select :*/A
91945 atoms, 85654 bonds, 51 pseudobonds, 17782 residues, 110 models selected
> show #46 models
> show #23-27,29,43-44,46-47,57-60#!1-22,28,30-42,45,48-50,56,61-63,78-81
> target m
> show #!81 target m
> view #81 clip false
> hide #23-27,29,43-44,46-47,57-60#!1-22,28,30-42,45,48-50,56,61-63,78-80
> target m
> select :*/A
91945 atoms, 85654 bonds, 51 pseudobonds, 17782 residues, 110 models selected
> select :#/A
Expected an objects specifier or a keyword
> select #:/A
Expected an objects specifier or a keyword
> select #81:/A
Expected an objects specifier or a keyword
> select #81
5346 atoms, 4984 bonds, 4 pseudobonds, 1070 residues, 2 models selected
> select #81/A
1336 atoms, 1246 bonds, 1 pseudobond, 267 residues, 2 models selected
> select /A
75784 atoms, 70409 bonds, 47 pseudobonds, 14936 residues, 108 models selected
> show #!80 models
> show #!79 models
> show #!78 models
> show #!63 models
> show #!62 models
> show #!61 models
> hide #!61 models
> show #23-27,29,43-44,46-47,57-60#!1-22,28,30-42,45,48-50,56,61 target m
> select ~sel
16161 atoms, 15245 bonds, 4 pseudobonds, 2846 residues, 18 models selected
> delete atoms (#23-27,29,46-47,60#!1,5-6,56,61-62,81 & sel)
> delete bonds (#23-27,29,46-47,60#!1,5-6,56,61-62,81 & sel)
> ui tool show Matchmaker
> matchmaker #23-27,29,43-44,46-47#!2-22,28,30-42,45 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 3i6c, chain A (#23), sequence alignment
score = 583.1
RMSD between 111 pruned atom pairs is 0.344 angstroms; (across all 113 pairs:
0.445)
Matchmaker 6vaj, chain A (#63) with 3ik8, chain A (#24), sequence alignment
score = 580.1
RMSD between 111 pruned atom pairs is 0.450 angstroms; (across all 113 pairs:
0.537)
Matchmaker 6vaj, chain A (#63) with 3ikd, chain A (#25), sequence alignment
score = 563.3
RMSD between 111 pruned atom pairs is 0.439 angstroms; (across all 113 pairs:
0.520)
Matchmaker 6vaj, chain A (#63) with 3ikg, chain A (#26), sequence alignment
score = 583.1
RMSD between 111 pruned atom pairs is 0.409 angstroms; (across all 113 pairs:
0.493)
Matchmaker 6vaj, chain A (#63) with 3jyj, chain A (#27), sequence alignment
score = 583.1
RMSD between 112 pruned atom pairs is 0.439 angstroms; (across all 113 pairs:
0.480)
Matchmaker 6vaj, chain A (#63) with 3kac, chain A (#29), sequence alignment
score = 589.4
RMSD between 111 pruned atom pairs is 0.449 angstroms; (across all 113 pairs:
0.541)
Matchmaker 6vaj, chain A (#63) with 4gwt, chain A (#43), sequence alignment
score = 178.6
RMSD between 33 pruned atom pairs is 0.844 angstroms; (across all 33 pairs:
0.844)
Matchmaker 6vaj, chain A (#63) with 4gwv, chain A (#44), sequence alignment
score = 178.6
RMSD between 33 pruned atom pairs is 0.829 angstroms; (across all 33 pairs:
0.829)
Matchmaker 6vaj, chain A (#63) with 4tns, chain A (#46), sequence alignment
score = 581.6
RMSD between 111 pruned atom pairs is 0.430 angstroms; (across all 113 pairs:
0.522)
Matchmaker 6vaj, chain A (#63) with 4tyo, chain A (#47), sequence alignment
score = 583.1
RMSD between 111 pruned atom pairs is 0.382 angstroms; (across all 113 pairs:
0.473)
Matchmaker 6vaj, chain A (#63) with 1pin, chain A (#2), sequence alignment
score = 797.2
RMSD between 149 pruned atom pairs is 0.368 angstroms; (across all 150 pairs:
0.443)
Matchmaker 6vaj, chain A (#63) with 1zcn, chain A (#3), sequence alignment
score = 770
RMSD between 143 pruned atom pairs is 0.285 angstroms; (across all 143 pairs:
0.285)
Matchmaker 6vaj, chain A (#63) with 2f21, chain A (#4), sequence alignment
score = 783
RMSD between 146 pruned atom pairs is 0.402 angstroms; (across all 148 pairs:
0.486)
Matchmaker 6vaj, chain A (#63) with 2itk, chain A (#5), sequence alignment
score = 777.1
RMSD between 138 pruned atom pairs is 0.414 angstroms; (across all 145 pairs:
0.827)
Matchmaker 6vaj, chain A (#63) with 2q5a, chain A (#6), sequence alignment
score = 777.1
RMSD between 138 pruned atom pairs is 0.499 angstroms; (across all 145 pairs:
0.878)
Matchmaker 6vaj, chain A (#63) with 2xp3, chain A (#7), sequence alignment
score = 777.7
RMSD between 138 pruned atom pairs is 0.529 angstroms; (across all 145 pairs:
0.940)
Matchmaker 6vaj, chain A (#63) with 2xp4, chain A (#8), sequence alignment
score = 783.1
RMSD between 138 pruned atom pairs is 0.519 angstroms; (across all 144 pairs:
0.862)
Matchmaker 6vaj, chain A (#63) with 2xp5, chain A (#9), sequence alignment
score = 784.3
RMSD between 138 pruned atom pairs is 0.464 angstroms; (across all 145 pairs:
0.902)
Matchmaker 6vaj, chain A (#63) with 2xp6, chain A (#10), sequence alignment
score = 780.1
RMSD between 138 pruned atom pairs is 0.424 angstroms; (across all 145 pairs:
0.841)
Matchmaker 6vaj, chain A (#63) with 2xp7, chain A (#11), sequence alignment
score = 784.3
RMSD between 138 pruned atom pairs is 0.499 angstroms; (across all 145 pairs:
0.899)
Matchmaker 6vaj, chain A (#63) with 2xp8, chain A (#12), sequence alignment
score = 784.3
RMSD between 137 pruned atom pairs is 0.591 angstroms; (across all 145 pairs:
0.953)
Matchmaker 6vaj, chain A (#63) with 2xp9, chain A (#13), sequence alignment
score = 783.1
RMSD between 137 pruned atom pairs is 0.515 angstroms; (across all 144 pairs:
0.935)
Matchmaker 6vaj, chain A (#63) with 2xpa, chain A (#14), sequence alignment
score = 785.5
RMSD between 139 pruned atom pairs is 0.532 angstroms; (across all 146 pairs:
1.085)
Matchmaker 6vaj, chain A (#63) with 2xpb, chain A (#15), sequence alignment
score = 785.5
RMSD between 138 pruned atom pairs is 0.450 angstroms; (across all 146 pairs:
1.030)
Matchmaker 6vaj, chain A (#63) with 2zqs, chain A (#16), sequence alignment
score = 783.7
RMSD between 149 pruned atom pairs is 0.279 angstroms; (across all 150 pairs:
0.369)
Matchmaker 6vaj, chain A (#63) with 2zqt, chain A (#17), sequence alignment
score = 807.4
RMSD between 149 pruned atom pairs is 0.265 angstroms; (across all 150 pairs:
0.321)
Matchmaker 6vaj, chain A (#63) with 2zqu, chain A (#18), sequence alignment
score = 780.2
RMSD between 149 pruned atom pairs is 0.316 angstroms; (across all 150 pairs:
0.406)
Matchmaker 6vaj, chain A (#63) with 2zqv, chain A (#19), sequence alignment
score = 763.4
RMSD between 143 pruned atom pairs is 0.498 angstroms; (across all 150 pairs:
0.895)
Matchmaker 6vaj, chain A (#63) with 2zr4, chain A (#20), sequence alignment
score = 795.1
RMSD between 149 pruned atom pairs is 0.332 angstroms; (across all 150 pairs:
0.404)
Matchmaker 6vaj, chain A (#63) with 2zr5, chain A (#21), sequence alignment
score = 793
RMSD between 149 pruned atom pairs is 0.438 angstroms; (across all 150 pairs:
0.487)
Matchmaker 6vaj, chain A (#63) with 2zr6, chain A (#22), sequence alignment
score = 721
RMSD between 149 pruned atom pairs is 0.563 angstroms; (across all 150 pairs:
0.594)
Matchmaker 6vaj, chain A (#63) with 3kab, chain A (#28), sequence alignment
score = 784.3
RMSD between 138 pruned atom pairs is 0.436 angstroms; (across all 145 pairs:
0.834)
Matchmaker 6vaj, chain A (#63) with 3kad, chain A (#30), sequence alignment
score = 780.1
RMSD between 136 pruned atom pairs is 0.426 angstroms; (across all 145 pairs:
0.988)
Matchmaker 6vaj, chain A (#63) with 3kaf, chain A (#31), sequence alignment
score = 776.5
RMSD between 136 pruned atom pairs is 0.637 angstroms; (across all 145 pairs:
1.126)
Matchmaker 6vaj, chain A (#63) with 3kag, chain A (#32), sequence alignment
score = 784.3
RMSD between 137 pruned atom pairs is 0.442 angstroms; (across all 145 pairs:
0.909)
Matchmaker 6vaj, chain A (#63) with 3kah, chain A (#33), sequence alignment
score = 766.3
RMSD between 136 pruned atom pairs is 0.422 angstroms; (across all 145 pairs:
1.104)
Matchmaker 6vaj, chain A (#63) with 3kai, chain A (#34), sequence alignment
score = 784.3
RMSD between 138 pruned atom pairs is 0.543 angstroms; (across all 145 pairs:
0.943)
Matchmaker 6vaj, chain A (#63) with 3kce, chain A (#35), sequence alignment
score = 785.5
RMSD between 139 pruned atom pairs is 0.475 angstroms; (across all 146 pairs:
0.864)
Matchmaker 6vaj, chain A (#63) with 3ntp, chain A (#36), sequence alignment
score = 783.1
RMSD between 139 pruned atom pairs is 0.436 angstroms; (across all 147 pairs:
0.889)
Matchmaker 6vaj, chain A (#63) with 3odk, chain A (#37), sequence alignment
score = 762.7
RMSD between 137 pruned atom pairs is 0.533 angstroms; (across all 145 pairs:
0.960)
Matchmaker 6vaj, chain A (#63) with 3oob, chain A (#38), sequence alignment
score = 780.4
RMSD between 139 pruned atom pairs is 0.487 angstroms; (across all 146 pairs:
0.951)
Matchmaker 6vaj, chain A (#63) with 3tc5, chain A (#39), sequence alignment
score = 787.3
RMSD between 138 pruned atom pairs is 0.570 angstroms; (across all 144 pairs:
0.889)
Matchmaker 6vaj, chain A (#63) with 3tcz, chain A (#40), sequence alignment
score = 770.7
RMSD between 139 pruned atom pairs is 0.422 angstroms; (across all 146 pairs:
0.849)
Matchmaker 6vaj, chain A (#63) with 3tdb, chain A (#41), sequence alignment
score = 748.5
RMSD between 139 pruned atom pairs is 0.441 angstroms; (across all 146 pairs:
0.846)
Matchmaker 6vaj, chain A (#63) with 3wh0, chain A (#42), sequence alignment
score = 779.2
RMSD between 135 pruned atom pairs is 0.590 angstroms; (across all 145 pairs:
0.982)
Matchmaker 6vaj, chain A (#63) with 4qib, chain A (#45), sequence alignment
score = 767.5
RMSD between 136 pruned atom pairs is 0.549 angstroms; (across all 145 pairs:
0.957)
> hide #57 models
> show #57 models
> hide #!56 models
> show #!56 models
> hide #!56 models
> show #!56 models
> ui tool show Matchmaker
> matchmaker #60 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 6dun, chain A (#60), sequence alignment
score = 592
RMSD between 111 pruned atom pairs is 0.311 angstroms; (across all 115 pairs:
0.837)
> matchmaker #60 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 6dun, chain A (#60), sequence alignment
score = 592
RMSD between 111 pruned atom pairs is 0.311 angstroms; (across all 115 pairs:
0.837)
> show #60 target m
> view #60 clip false
> select add #60
1812 atoms, 1755 bonds, 187 residues, 1 model selected
> select subtract #60
Nothing selected
> matchmaker #!79 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 7efx, chain A (#79), sequence alignment
score = 785.6
RMSD between 141 pruned atom pairs is 0.486 angstroms; (across all 147 pairs:
0.757)
> matchmaker #!48 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 4u84, chain A (#48), sequence alignment
score = 784.5
RMSD between 135 pruned atom pairs is 0.572 angstroms; (across all 145 pairs:
0.997)
> matchmaker #!49-50 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 4u85, chain A (#49), sequence alignment
score = 777.3
RMSD between 138 pruned atom pairs is 0.464 angstroms; (across all 145 pairs:
0.859)
Matchmaker 6vaj, chain A (#63) with 4u86, chain A (#50), sequence alignment
score = 776.8
RMSD between 136 pruned atom pairs is 0.615 angstroms; (across all 145 pairs:
1.012)
> matchmaker #!80 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 7ekv, chain A (#80), sequence alignment
score = 780.2
RMSD between 140 pruned atom pairs is 0.462 angstroms; (across all 146 pairs:
0.786)
> matchmaker #57-59 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 5vti, chain A (#57), sequence alignment
score = 154.5
RMSD between 27 pruned atom pairs is 0.556 angstroms; (across all 31 pairs:
1.225)
Matchmaker 6vaj, chain A (#63) with 5vtj, chain A (#58), sequence alignment
score = 171.2
RMSD between 31 pruned atom pairs is 0.881 angstroms; (across all 33 pairs:
1.320)
Matchmaker 6vaj, chain A (#63) with 5vtk, chain A (#59), sequence alignment
score = 177.2
RMSD between 33 pruned atom pairs is 0.772 angstroms; (across all 33 pairs:
0.772)
> matchmaker #!56 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 5uy9, chain A (#56), sequence alignment
score = 771.4
RMSD between 141 pruned atom pairs is 0.572 angstroms; (across all 146 pairs:
0.837)
> matchmaker #!81 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 7f0m, chain A (#81), sequence alignment
score = 798.8
RMSD between 140 pruned atom pairs is 0.481 angstroms; (across all 146 pairs:
0.814)
> matchmaker #!78 to #63
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6vaj, chain A (#63) with 7efj, chain A (#78), sequence alignment
score = 772.4
RMSD between 141 pruned atom pairs is 0.474 angstroms; (across all 147 pairs:
0.776)
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX-chainA-
> only.cxs
> select :133/A
75784 atoms, 70409 bonds, 47 pseudobonds, 14936 residues, 108 models selected
> select :133
406 atoms, 406 bonds, 56 residues, 56 models selected
> select clear
> hide #!63 models
> show #!63 models
> hide #!63 models
> show #!63 models
> hide #23-27,29,43-44,46-47,57-60#!2-22,28,30-42,45,48-50,56,61-62 target m
> hide #!78-80 target m
> show #!78 models
> hide #!78 models
> show #!78 models
> hide #!78 models
> show #!79 models
> hide #!79 models
> show #!79 models
> hide #!79 models
> show #!80 models
> hide #!80 models
> show #!80 models
> hide #!80 models
> show #!80 models
> hide #!80 models
> show #!79 models
> hide #!79 models
> hide #!81 models
> show #!78 models
> hide #!78 models
> show #!78 models
> hide #!78 models
> show #!78 models
> hide #!78 models
> select #63/A:115
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
48 atoms, 47 bonds, 7 residues, 1 model selected
> select up
914 atoms, 930 bonds, 117 residues, 1 model selected
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
66622 atoms, 67975 bonds, 47 pseudobonds, 8092 residues, 108 models selected
> select #63
1366 atoms, 1257 bonds, 1 pseudobond, 286 residues, 2 models selected
> select intersect
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
1177 atoms, 1202 bonds, 1 pseudobond, 150 residues, 2 models selected
> surface (#!63 & sel)
> select clear
> show #!81 models
> hide #!81 models
> hide #!63 models
> show #!81 models
> show #!63 models
> hide #!81 models
> show #!81 models
> hide #63.2 models
> hide #63.1 models
> show #!80 models
> hide #!80 models
> show #!80 models
> show #63.2 models
> hide #!63 models
> show #!63 models
> show #!79 models
> show #!78 models
> hide #!63 models
> show #!63 models
> hide #!63 models
> show #!63 models
> show #!62 models
> hide #!62 models
> show #!62 models
> hide #!62 models
> show #!61 models
> hide #!61 models
> show #!61 models
> hide #!61 models
> close #61-62
> open 6o33 6o34
6o33 title:
Crystal Structure Analysis of PIN1 [more info...]
Chain information for 6o33 #1
---
Chain | Description | UniProt
A | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 1-163
B | peptide |
Non-standard residues in 6o33 #1
---
ACE — acetyl group
NH2 — amino group
SO4 — sulfate ion
YCP — (2S)-piperidine-2-carboxylic acid
6o34 title:
Crystal Structure Analysis of PIN1 [more info...]
Chain information for 6o34 #51
---
Chain | Description | UniProt
A | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | PIN1_HUMAN 1-163
B | peptide |
Non-standard residues in 6o34 #51
---
2PE — nonaethylene glycol
ACE — acetyl group
CIR — citrulline
GOL — glycerol (glycerin; propane-1,2,3-triol)
MEA — N-methylphenylalanine
NH2 — amino group
SO4 — sulfate ion
YCP — (2S)-piperidine-2-carboxylic acid
> show #63.1 models
> hide #63.1 models
> hide #!63 models
> show #!63 models
> copy m51 m52
Unknown command: copy m51 m52
> copy #51 #52
Unknown command: copy #51 #52
> copy :WAT
Unknown command: copy :WAT
> select :WAT
Nothing selected
> select :HOH
7142 atoms, 418 bonds, 6724 residues, 61 models selected
> hide (#!1,51,63,78-81 & sel) target ab
> select :SO4
110 atoms, 88 bonds, 22 residues, 17 models selected
> hide (#!1,51,63 & sel) target a
> select clear
> hide #!80 models
> show #!80 models
> hide #!80 models
> hide #!79 models
> hide #!78 models
> hide #!63 models
> show #!63 models
> hide #!81 models
> hide #!51 models
> hide #!1 models
> select #63/A:201@C2
1 atom, 1 residue, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
16 atoms, 16 bonds, 1 residue, 1 model selected
> style sel ball
Changed 16 atom styles
> select #63/A:135@OE2
1 atom, 1 residue, 1 model selected
> select clear
> select #63/A:114@CB
1 atom, 1 residue, 1 model selected
> select up
6 atoms, 5 bonds, 1 residue, 2 models selected
> select up
48 atoms, 47 bonds, 7 residues, 2 models selected
> select up
914 atoms, 930 bonds, 117 residues, 2 models selected
> color (#!63 & sel) dark gray
> ui tool show "Color Actions"
> select #63/A:201@C2
1 atom, 1 residue, 1 model selected
> select up
16 atoms, 16 bonds, 1 residue, 1 model selected
> select up
914 atoms, 930 bonds, 117 residues, 1 model selected
> select up
965 atoms, 983 bonds, 123 residues, 2 models selected
> color #63 #b8938aff
> color #63 #b88189ff
> select #63/A:201@C2
1 atom, 1 residue, 1 model selected
> select up
16 atoms, 16 bonds, 1 residue, 1 model selected
> select up
914 atoms, 930 bonds, 117 residues, 1 model selected
> select up
965 atoms, 983 bonds, 123 residues, 2 models selected
> select down
914 atoms, 930 bonds, 117 residues, 2 models selected
> select down
16 atoms, 16 bonds, 1 residue, 2 models selected
> select down
1 atom, 1 residue, 1 model selected
> select up
16 atoms, 16 bonds, 1 residue, 1 model selected
> select up
914 atoms, 930 bonds, 117 residues, 1 model selected
> ui tool show "Color Actions"
> color sel byhetero target acpf
> ui tool show "Color Actions"
> select clear
> show #!78 models
> show #!79 models
> show #!80 models
> show #!81 models
> hide #!78 models
> hide #!79 models
> hide #!80 models
> hide #63.2 models
> hide #!63 models
> select #81/A:201@C29
1 atom, 1 residue, 1 model selected
> select up
30 atoms, 34 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel color #39ff3b interModel false distSlop 0.6 angleSlop 45.0
> twoColors true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.6 angstroms and 45 degrees
Models used:
81 7f0m
1 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
7f0m #81/A GLN 131 N 7f0m #81/A 0BF 201 O14 no hydrogen 2.580 N/A
1 hydrogen bonds found
1 strict hydrogen bonds found
> style sel ball
Changed 30 atom styles
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
30 atoms, 34 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel color #39ff3b interModel false distSlop 0.8 angleSlop 60.0
> twoColors true reveal true log true
Finding intramodel H-bonds
Constraints relaxed by 0.8 angstroms and 60 degrees
Models used:
81 7f0m
2 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
7f0m #81/A ARG 68 NH1 7f0m #81/A 0BF 201 O13 no hydrogen 3.264 N/A
7f0m #81/A GLN 131 N 7f0m #81/A 0BF 201 O14 no hydrogen 2.580 N/A
2 hydrogen bonds found
1 strict hydrogen bonds found
> show #!80 models
> hide #!80 models
> show #!80 models
> show #!79 models
> show #!78 models
> hide #!78 models
> hide #!79 models
> hide #!80 models
> hbonds sel color #39ff3b interModel false distSlop 0.8 angleSlop 60.0 reveal
> true log true
Finding intramodel H-bonds
Constraints relaxed by 0.8 angstroms and 60 degrees
Models used:
81 7f0m
2 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
7f0m #81/A ARG 68 NH1 7f0m #81/A 0BF 201 O13 no hydrogen 3.264 N/A
7f0m #81/A GLN 131 N 7f0m #81/A 0BF 201 O14 no hydrogen 2.580 N/A
2 hydrogen bonds found
> show #!63 models
> select #63/A:201@C5
1 atom, 1 residue, 1 model selected
> select up
16 atoms, 16 bonds, 1 residue, 1 model selected
> hbonds sel color #39ff3b dashes 6 interModel false distSlop 0.8 angleSlop
> 60.0 reveal true retainCurrent true log true
Finding intramodel H-bonds
Constraints relaxed by 0.8 angstroms and 60 degrees
Models used:
63 6vaj
2 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
6vaj #63/A GLN 131 N 6vaj #63/A QT7 201 O3 no hydrogen 2.914 N/A
6vaj #63/A HIS 157 NE2 6vaj #63/A QT7 201 O2 no hydrogen 3.198 N/A
2 hydrogen bonds found
> hide #!81 models
> show #63.2 models
> select clear
> hide #63.2 models
> select clear
> ui tool show "Color Actions"
> set bgColor white
> show #63.2 models
> show #!81 models
> hide #63.3 models
> show #63.3 models
> hide #63.2 models
> show #63.2 models
> hide #!63 models
> select #81/A:129
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
38 atoms, 37 bonds, 5 residues, 1 model selected
> select up
921 atoms, 941 bonds, 114 residues, 1 model selected
> select up
968 atoms, 990 bonds, 119 residues, 1 model selected
> select up
1195 atoms, 1225 bonds, 147 residues, 1 model selected
> select up
1336 atoms, 1246 bonds, 267 residues, 1 model selected
> select up
75883 atoms, 70510 bonds, 14951 residues, 61 models selected
> select up
75883 atoms, 70510 bonds, 3 pseudobonds, 14951 residues, 64 models selected
> select up
75883 atoms, 70510 bonds, 3 pseudobonds, 14951 residues, 64 models selected
> select up
75883 atoms, 70510 bonds, 3 pseudobonds, 14951 residues, 64 models selected
> select up
75883 atoms, 70510 bonds, 3 pseudobonds, 14951 residues, 64 models selected
> select down
75883 atoms, 70510 bonds, 14951 residues, 62 models selected
> select down
1336 atoms, 1246 bonds, 267 residues, 2 models selected
> select down
1195 atoms, 1225 bonds, 147 residues, 1 model selected
> select down
968 atoms, 990 bonds, 119 residues, 1 model selected
> select down
921 atoms, 941 bonds, 114 residues, 1 model selected
> select clear
> show #!80 models
> hide #!81 models
> select #80/A:109
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
79 atoms, 80 bonds, 10 residues, 1 model selected
> select up
917 atoms, 936 bonds, 114 residues, 1 model selected
> select down
79 atoms, 80 bonds, 10 residues, 1 model selected
> select up
917 atoms, 936 bonds, 114 residues, 1 model selected
> select down
79 atoms, 80 bonds, 10 residues, 1 model selected
> select up
917 atoms, 936 bonds, 114 residues, 1 model selected
> select down
79 atoms, 80 bonds, 10 residues, 1 model selected
> select up
917 atoms, 936 bonds, 114 residues, 1 model selected
> select down
79 atoms, 80 bonds, 10 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX-chainA-
> only.cxs
> select #78,79,80,81
5299 atoms, 4949 bonds, 6 pseudobonds, 1055 residues, 9 models selected
> select intersect
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="NAL"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
4668 atoms, 4768 bonds, 4 pseudobonds, 586 residues, 8 models selected
> surface (#!80 & sel)
> show #!79 models
> show #!78 models
> hide #!78 models
> hide #!79 models
> hide #!80 models
> show #!78 models
> hide #!78 models
> show #!78 models
> show #!80 models
> hide #!80 models
> show #!80 models
> show #!79 models
> hide #!80 models
> hide #!79 models
> show #!79 models
> hide #!78 models
> show #!78 models
> hide #!79 models
> hide #!78 models
> show #63.1 models
> show #!78 models
> hide #!78 models
> show #!79 models
> hide #!79 models
> show #!80 models
> hide #!80 models
> show #!80 models
> select clear
> hide #!80 models
> show #!80 models
> hide #!80 models
> show #!80 models
> hide #!80 models
> show #!80 models
> hide #!80 models
> show #!80 models
> hide #!80 models
> show #!80 models
> hide #!80 models
> show #!80 models
> hide #63.2 models
> show #63.2 models
> hide #63.2 models
> show #63.2 models
> hide #63.2 models
> show #63.2 models
> hide #63.2 models
> show #63.2 models
> hide #63.2 models
> hide #!80 models
> show #!80 models
> hide #80.2 models
> select #80/A:201@C20
1 atom, 1 residue, 1 model selected
> select up
26 atoms, 29 bonds, 1 residue, 1 model selected
> style sel ball
Changed 26 atom styles
> select clear
> show #!78 models
> hide #!63 models
> hide #63.3 models
> hide #!78 models
> hide #!80 models
> show #!81 models
> hide #!81 models
> show #!80 models
> hide #!80 models
> show #!81 models
> select #81/A:115
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
48 atoms, 47 bonds, 7 residues, 1 model selected
> select up
921 atoms, 941 bonds, 114 residues, 1 model selected
> select subtract #81/A:201@C27
920 atoms, 939 bonds, 114 residues, 1 model selected
> select up
921 atoms, 941 bonds, 114 residues, 1 model selected
> select down
920 atoms, 939 bonds, 114 residues, 1 model selected
> select down
920 atoms, 939 bonds, 114 residues, 1 model selected
> show #!80 models
> show #!79 models
> hide #!81 models
> hide #!80 models
> select #79/A:125
11 atoms, 11 bonds, 1 residue, 1 model selected
> select up
36 atoms, 36 bonds, 5 residues, 1 model selected
> select up
916 atoms, 934 bonds, 115 residues, 1 model selected
> select clear
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX-chainA-
> only.cxs
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="NAL"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
66671 atoms, 68025 bonds, 47 pseudobonds, 8096 residues, 108 models selected
> surface (#!79 & sel)
> select subtract #63.2
65494 atoms, 66823 bonds, 46 pseudobonds, 7946 residues, 109 models selected
> show #!80 models
> hide #!79 models
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="NAL"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
66671 atoms, 68025 bonds, 47 pseudobonds, 8096 residues, 108 models selected
> surface (#!80 & sel)
> show #!81 models
> hide #!80 models
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="NAL"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
66671 atoms, 68025 bonds, 47 pseudobonds, 8096 residues, 108 models selected
> surface (#!81 & sel)
> show #!80 models
> show #!79 models
> show #!78 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="NAL"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
66671 atoms, 68025 bonds, 47 pseudobonds, 8096 residues, 108 models selected
> surface (#!78 & sel)
> show #!79 models
> show #!80 models
> show #!81 models
> hide #!79 models
> show #!79 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> hide #!78 models
> show #!79 models
> show #!63 models
> show #63.2 models
> hide #79.2 models
> hide #!63 models
> select #79/A:201@C11
1 atom, 1 residue, 1 model selected
> select up
21 atoms, 23 bonds, 1 residue, 1 model selected
> style sel ball
Changed 21 atom styles
> show #!80 models
> hide #80.2 models
> show #79.2 models
> show #80.2 models
> hide #80.2 models
> show #80.2 models
> hide #80.2 models
> show #80.2 models
> hide #80.2 models
> show #80.2 models
> hide #79.2 models
> show #79.2 models
> hide #79.2 models
> show #79.2 models
> hide #79.2 models
> show #79.2 models
> hide #79.2 models
> show #79.2 models
> hide #63.2 models
> show #63.2 models
> hide #!63 models
> show #!63 models
> hide #63.1 models
> show #63.1 models
> hide #63.2 models
> hide #80.2 models
> hide #79.2 models
> select clear
> select #80/A:69
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> show #!81 models
> hide #81.3 models
> select #79/A:68
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> hide #81.1 models
> show #81.1 models
> hide #!81 models
> show #!81 models
> hide #!81 models
> show #!81 models
> hide #!81 models
> show #!81 models
> hide #!63 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> show #!81 models
> select #81/A:69
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> hide #!81 models
> show #!80 models
> select #80/A:69
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #80/A:68
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> show #!78 models
> hide #78.1 models
> hide #78.2 models
> hide #!80 models
> show #!63 models
> hide #!63 models
> show #!63 models
> select #63/A:68
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> hide #!78 models
> show #!78 models
> hide #79.1 models
> show #79.1 models
> hide #79.1 models
> hide #!79 models
> hide #!63 models
> select #78/A:69
11 atoms, 10 bonds, 1 residue, 1 model selected
> select add #78/A:68
22 atoms, 20 bonds, 2 residues, 2 models selected
> show sel atoms
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX-chainA-
> only.cxs
> show #!63 models
> hide #63.1 models
> show #80.2 models
> select clear
> show #!1 models
> select #1/B:5@O
1 atom, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
47 atoms, 49 bonds, 6 residues, 1 model selected
> style sel ball
Changed 47 atom styles
> hide #!63 models
> hide #!80 models
> hide #!78 models
> hide #80.1 models
> show #80.1 models
> hide #!80 models
> hide #81.1 models
> select #1/A:68
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select up
159 atoms, 162 bonds, 18 residues, 1 model selected
> select up
908 atoms, 923 bonds, 116 residues, 1 model selected
> select down
159 atoms, 162 bonds, 18 residues, 1 model selected
> select down
11 atoms, 10 bonds, 1 residue, 1 model selected
> select down
11 atoms, 10 bonds, 1 residue, 1 model selected
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="NAL"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
66671 atoms, 68025 bonds, 47 pseudobonds, 8096 residues, 108 models selected
> select #1/B
49 atoms, 49 bonds, 8 residues, 1 model selected
> select ~sel
75834 atoms, 70461 bonds, 51 pseudobonds, 14943 residues, 110 models selected
> surface hidePatches (#!1 & sel)
> surface (#!1 & sel)
> hide #1.1 models
> hide #1.2 models
> show #1.1 models
> show #1.2 models
> hide #!1 models
> show #!51 models
> select #51/B:6@N
1 atom, 1 residue, 1 model selected
> select up
49 atoms, 52 bonds, 6 residues, 1 model selected
> style sel ball
Changed 49 atom styles
> show #!1 models
> hide #!1 models
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CSD"::name="CSO"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="NAL"::name="PHE"::name="PRO"::name="SER"::name="THR"::name="TRP"::name="TYR"::name="VAL"
66671 atoms, 68025 bonds, 47 pseudobonds, 8096 residues, 108 models selected
> surface (#!51 & sel)
> select clear
> close #1.2
> close #51.3
> show #!1 models
> hide #!51 models
> select #1/A
1307 atoms, 1217 bonds, 1 pseudobond, 265 residues, 2 models selected
> surface (#!1 & sel)
> select clear
> hide #1.2 models
> show #!51 models
> hide #51.1 models
> hide #51.2 models
> select #51/A:68
5 atoms, 4 bonds, 1 residue, 1 model selected
> select add #51/A:69
10 atoms, 8 bonds, 2 residues, 2 models selected
> show sel atoms
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX-chainA-
> only.cxs
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #1.2 models
> show #!50 models
> show #51.2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!50 models
> show #!50 models
> hide #!50 models
> show #51.1 models
> hide #51.1 models
> hide #51.2 models
> show #51.2 models
> hide #51.2 models
> show #!63 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!51 models
> hide #!1 models
> show #!1 models
> show #!51 models
> hide #80.1 models
> hide #80.2 models
> hide #81.2 models
> show #!78 models
> hide #!78 models
> show #!78 models
> hide #!63 models
> show #78.2 models
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
20 atoms, 22 bonds, 1 residue, 1 model selected
> style sel ball
Changed 20 atom styles
> hide #!1 models
> select clear
> hide #!51 models
> show #!63 models
> show #!80 models
> show #!81 models
> show #81.2 models
> show #81.3 models
> hide #81.3 models
> show #81.3 models
> hide #81.3 models
> show #81.3 models
> hide #!81 models
> show #!81 models
> hide #!80 models
> hide #!78 models
> hide #81.3 models
> show #63.3 models
> select #81/A:157
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> save /Users/adaina/Documents/PROJETS/Quantro/PIN1/CoX-chimeraX-chainA-
> only.cxs
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,1
Model Number: Z14V00074SM/A
Chip: Unknown
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 32 GB
System Firmware Version: 10151.81.1
OS Loader Version: 10151.81.1
Software:
System Software Overview:
System Version: macOS 14.3.1 (23D60)
Kernel Version: Darwin 23.3.0
Time since boot: 55 days, 13 hours, 5 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL U2719DC:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.21.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 19 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in QTabBar:paintEvent(). QPainter::begin: Paint device returned engine == 0, type: 3 |
comment:2 by , 19 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Probable Qt bug.
Crashed in Qt with more than 80 models open, two displays, ChimeraX 1.6, Mac.