glDrawBuffer: invalid operation

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-5.15.0-105-generic-x86_64-with-glibc2.31
ChimeraX Version: 1.5.dev202207311904 (2022-07-31 19:04:24 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5.dev202207311904 (2022-07-31)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CAAKYSIESRSGHGWDAPDYW_0008.pdb

Chain information for 3thm_HL_F_CAAKYSIESRSGHGWDAPDYW_0008.pdb #1  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CAALNSGYGSKDRYEAYLATW_0017.pdb

Chain information for 3thm_HL_F_CAALNSGYGSKDRYEAYLATW_0017.pdb #2  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CARRGKGYDIYGWAAWGFDYW_0003.pdb

Chain information for 3thm_HL_F_CARRGKGYDIYGWAAWGFDYW_0003.pdb #3  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CARRGVYKQSGYGSHFGFDHW_0005.pdb

Chain information for 3thm_HL_F_CARRGVYKQSGYGSHFGFDHW_0005.pdb #4  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CASGDDDVGAERSRDYIGAYW_0018.pdb

Chain information for 3thm_HL_F_CASGDDDVGAERSRDYIGAYW_0018.pdb #5  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CAVNAPTNTKGGGAYDFTNNW_0000.pdb

Chain information for 3thm_HL_F_CAVNAPTNTKGGGAYDFTNNW_0000.pdb #6  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CCWGRYLYFTYTTSSVDGETK_0013.pdb

Chain information for 3thm_HL_F_CCWGRYLYFTYTTSSVDGETK_0013.pdb #7  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CLFVKSGYDGYAYYSFPFDYW_0004.pdb

Chain information for 3thm_HL_F_CLFVKSGYDGYAYYSFPFDYW_0004.pdb #8  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_CRLQGGGDGVGGVDSRGSYYY_0006.pdb

Chain information for 3thm_HL_F_CRLQGGGDGVGGVDSRGSYYY_0006.pdb #9  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_TAFGRPNHGYLWGHGFYPFAP_0007.pdb

Chain information for 3thm_HL_F_TAFGRPNHGYLWGHGFYPFAP_0007.pdb #10  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_VLGSSCCGGSRIGIYGAYNVR_0002.pdb

Chain information for 3thm_HL_F_VLGSSCCGGSRIGIYGAYNVR_0002.pdb #11  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> open
> /home/qiao/Desktop/cp_ND_737/ND_relative_framework_debug/3thm_HL_F_VVNYTVWSGGSTGLDSGRYVY_0015.pdb

Chain information for 3thm_HL_F_VVNYTVWSGGSTGLDSGRYVY_0015.pdb #12  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> select #*/L

10104 atoms, 10344 bonds, 1320 residues, 12 models selected  

> hide sel cartoons

> select #*/H:0-106

9096 atoms, 9264 bonds, 1224 residues, 12 models selected  

> hide sel cartoons

> select #*/H:139-300

828 atoms, 816 bonds, 132 residues, 12 models selected  

> hide sel cartoons

> select #*/F:36,39,40, 41, 42, 43, 44, 45, 46, 47, 58, 59, 60, 61, 63, 77,
> 78, 79, 80, 81, 86

2004 atoms, 1992 bonds, 252 residues, 12 models selected  

> color sel yellow

> open /home/qiao/Downloads/3thm_HL_F.pdb

Chain information for 3thm_HL_F.pdb #13  
---  
Chain | Description  
F | No description available  
H | No description available  
L | No description available  
  

> select #*/L

11757 atoms, 12017 bonds, 1430 residues, 13 models selected  

> hide sel cartoons

> select #*/F

8367 atoms, 8497 bonds, 26 pseudobonds, 1001 residues, 26 models selected  

> style sel sphere

Changed 8367 atom styles  

> hide sel cartoons

> style sel sphere

Changed 8367 atom styles  

> show sel atoms

> style sel ball

Changed 8367 atom styles  

> style sel sphere

Changed 8367 atom styles  

> show sel surfaces

> hide sel atoms

> select #*/F:36,39,40, 41, 42, 43, 44, 45, 46, 47, 58, 59, 60, 61, 63, 77,
> 78, 79, 80, 81, 86

2324 atoms, 2311 bonds, 273 residues, 13 models selected  

> color (#!1-13 & sel) yellow

> color (#!1-13 & sel) hot pink

> select #*/H:139-300

982 atoms, 971 bonds, 143 residues, 13 models selected  

> hide sel atoms

> hide sel cartoons

> select #*/H:0-106

10600 atoms, 10782 bonds, 1326 residues, 13 models selected  

> hide sel atoms

> hide sel cartoons

> select #13/H:107-139

319 atoms, 324 bonds, 20 residues, 1 model selected  

> color sel cyan

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 165, in draw  
self._draw_scene(camera, drawings)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 249, in _draw_scene  
draw_highlight_outline(r, highlight_drawings, color = self._highlight_color,  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1609, in draw_highlight_outline  
r.outline.finish_rendering_outline(color=color, pixel_width=pixel_width)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1876, in finish_rendering_outline  
r.pop_framebuffer()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 714, in pop_framebuffer  
fb.activate()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2262, in activate  
GL.glDrawBuffer(self._draw_buffer)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  




OpenGL version: 3.3.0 NVIDIA 535.171.04
OpenGL renderer: NVIDIA GeForce RTX 3080 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_CA.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.1
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: Razer x Lambda
Model: TensorBook (late 2021)
OS: Ubuntu 20.04 focal
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 11th Gen Intel(R) Core(TM) i7-11800H @ 2.30GHz
Cache Size: 24576 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           62Gi       6.6Gi        47Gi       158Mi       8.8Gi        55Gi
	Swap:         2.0Gi          0B       2.0Gi

Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation Device [10de:249c] (rev a1)	
	Subsystem: Razer USA Ltd. Device [1a58:201d]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.0.5
    Babel: 2.10.3
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.7.0
    certifi: 2022.6.15
    cftime: 1.6.1
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.5.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.7
    ChimeraX-AtomicLibrary: 7.0.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChangeChains: 1.0
    ChimeraX-CheckWaters: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.1
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5.dev202207311904
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.6
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.2.1
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.5
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.7
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.21.4
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.2
    decorator: 5.1.1
    distro: 1.6.0
    docutils: 0.17.1
    entrypoints: 0.4
    executing: 0.9.1
    filelock: 3.4.2
    fonttools: 4.34.4
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    ipykernel: 6.15.0
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.3.4
    jupyter-core: 4.11.1
    kiwisolver: 1.4.4
    line-profiler: 3.4.0
    lxml: 4.9.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.6.0
    networkx: 2.6.3
    numexpr: 2.8.3
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.12.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.30
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.1
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.1
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.2.0
    qtconsole: 5.3.1
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 62.6.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.3.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

[Tom Goddard]

I think Linux might drop the OpenGL context, maybe when the machine sleeps, maybe when an external screen is added or deleted. Have seen this error reported 10-20 times, always on Linux.