Opened 19 months ago

Closed 19 months ago

#14930 closed defect (can't reproduce)

Problem reading .dx map: could not convert string to float: b'attribute'

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Volume Data Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        macOS-14.4.1-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Volumes/T7/mitoneet/density.dx

Opened density.dx as #1, grid size 5,6,6, pixel 1, shown at level
-0.0002,0.0002, step 1, values float32  

> volume #1 level -0.0002 level 2.122e-05

> open /Volumes/T7/mitoneet/mitonet-peo/4.equil/mitoneet-eq.pdb

Summary of feedback from opening /Volumes/T7/mitoneet/mitonet-
peo/4.equil/mitoneet-eq.pdb  
---  
warnings | Ignored bad PDB record found on line 100001  
ATOM 186a0 H1 TIP3W3460 20.078 44.487 -18.079 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100002  
ATOM 186a1 H2 TIP3W3460 19.180 43.823 -17.057 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100003  
ATOM 186a2 OH2 TIP3W3461 51.347 -40.379 -38.022 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100004  
ATOM 186a3 H1 TIP3W3461 51.016 -40.669 -37.172 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100005  
ATOM 186a4 H2 TIP3W3461 51.339 -39.423 -37.969 0.00 0.00 WT5  
  
91 messages similar to the above omitted  
Duplicate atom serial number found: 18700  
Duplicate atom serial number found: 18701  
Duplicate atom serial number found: 18702  
Duplicate atom serial number found: 18703  
Duplicate atom serial number found: 18704  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100107  
ATOM 1870a H2 TIP3W3497 18.691 -59.321 -16.176 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100108  
ATOM 1870b OH2 TIP3W3498 23.011 -33.457 30.685 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100109  
ATOM 1870c H1 TIP3W3498 23.153 -33.117 31.569 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100110  
ATOM 1870d H2 TIP3W3498 22.590 -34.306 30.820 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100111  
ATOM 1870e OH2 TIP3W3499 -17.774 5.554 -49.071 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18710  
Duplicate atom serial number found: 18711  
Duplicate atom serial number found: 18712  
Duplicate atom serial number found: 18713  
Duplicate atom serial number found: 18714  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100123  
ATOM 1871a OH2 TIP3W3503 -36.263 48.282 23.446 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100124  
ATOM 1871b H1 TIP3W3503 -37.046 48.203 22.901 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100125  
ATOM 1871c H2 TIP3W3503 -36.090 47.390 23.748 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100126  
ATOM 1871d OH2 TIP3W3504 -55.352 31.829 -35.811 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100127  
ATOM 1871e H1 TIP3W3504 -55.284 30.957 -35.421 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18720  
Duplicate atom serial number found: 18721  
Duplicate atom serial number found: 18722  
Duplicate atom serial number found: 18723  
Duplicate atom serial number found: 18724  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100139  
ATOM 1872a H1 TIP3W3509 -5.858 43.947 45.965 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100140  
ATOM 1872b H2 TIP3W3509 -4.694 44.537 45.198 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100141  
ATOM 1872c OH2 TIP3W3510 44.202 5.630 -45.317 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100142  
ATOM 1872d H1 TIP3W3510 43.561 6.293 -45.060 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100143  
ATOM 1872e H2 TIP3W3510 44.099 5.552 -46.266 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18730  
Duplicate atom serial number found: 18731  
Duplicate atom serial number found: 18732  
Duplicate atom serial number found: 18733  
Duplicate atom serial number found: 18734  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100155  
ATOM 1873a H2 TIP3W3515 24.629 -44.718 -17.460 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100156  
ATOM 1873b OH2 TIP3W3516 -28.485 23.872 -55.174 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100157  
ATOM 1873c H1 TIP3W3516 -29.058 24.592 -54.909 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100158  
ATOM 1873d H2 TIP3W3516 -27.632 24.283 -55.316 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100159  
ATOM 1873e OH2 TIP3W3517 45.593 11.138 11.418 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18740  
Duplicate atom serial number found: 18741  
Duplicate atom serial number found: 18742  
Duplicate atom serial number found: 18743  
Duplicate atom serial number found: 18744  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100171  
ATOM 1874a OH2 TIP3W3521 -56.294 -1.651 -23.840 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100172  
ATOM 1874b H1 TIP3W3521 -56.259 -2.465 -24.343 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100173  
ATOM 1874c H2 TIP3W3521 -56.753 -1.035 -24.412 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100174  
ATOM 1874d OH2 TIP3W3522 22.692 -9.429 -60.202 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100175  
ATOM 1874e H1 TIP3W3522 23.104 -8.662 -60.600 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18750  
Duplicate atom serial number found: 18751  
Duplicate atom serial number found: 18752  
Duplicate atom serial number found: 18753  
Duplicate atom serial number found: 18754  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100187  
ATOM 1875a H1 TIP3W3529 -5.707 57.892 -61.923 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100188  
ATOM 1875b H2 TIP3W3529 -5.321 59.033 -61.007 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100189  
ATOM 1875c OH2 TIP3W3530 29.226 15.778 4.302 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100190  
ATOM 1875d H1 TIP3W3530 29.805 15.666 5.056 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100191  
ATOM 1875e H2 TIP3W3530 29.673 16.419 3.749 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18760  
Duplicate atom serial number found: 18761  
Duplicate atom serial number found: 18762  
Duplicate atom serial number found: 18763  
Duplicate atom serial number found: 18764  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100203  
ATOM 1876a H2 TIP3W3534 -44.607 8.907 39.806 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100204  
ATOM 1876b OH2 TIP3W3535 -36.744 9.255 18.988 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100205  
ATOM 1876c H1 TIP3W3535 -37.221 9.975 19.402 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100206  
ATOM 1876d H2 TIP3W3535 -36.040 9.048 19.602 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100207  
ATOM 1876e OH2 TIP3W3536 -7.036 -23.759 -7.675 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18770  
Duplicate atom serial number found: 18771  
Duplicate atom serial number found: 18772  
Duplicate atom serial number found: 18773  
Duplicate atom serial number found: 18774  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100219  
ATOM 1877a OH2 TIP3W3540 20.216 5.203 42.373 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100220  
ATOM 1877b H1 TIP3W3540 21.085 5.380 42.734 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100221  
ATOM 1877c H2 TIP3W3540 20.242 4.277 42.131 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100222  
ATOM 1877d OH2 TIP3W3541 -35.102 21.231 2.122 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100223  
ATOM 1877e H1 TIP3W3541 -35.860 20.663 1.983 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18780  
Duplicate atom serial number found: 18781  
Duplicate atom serial number found: 18782  
Duplicate atom serial number found: 18783  
Duplicate atom serial number found: 18784  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100235  
ATOM 1878a H1 TIP3W3545 38.423 10.009 35.220 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100236  
ATOM 1878b H2 TIP3W3545 37.522 8.934 34.649 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100237  
ATOM 1878c OH2 TIP3W3546 -18.140 0.188 -48.727 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100238  
ATOM 1878d H1 TIP3W3546 -18.757 -0.496 -48.471 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100239  
ATOM 1878e H2 TIP3W3546 -17.889 0.607 -47.904 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18790  
Duplicate atom serial number found: 18791  
Duplicate atom serial number found: 18792  
Duplicate atom serial number found: 18793  
Duplicate atom serial number found: 18794  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100251  
ATOM 1879a H2 TIP3W3550 30.335 -9.373 53.669 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100252  
ATOM 1879b OH2 TIP3W3551 -22.674 53.484 52.536 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100253  
ATOM 1879c H1 TIP3W3551 -22.555 53.167 51.641 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100254  
ATOM 1879d H2 TIP3W3551 -21.869 53.965 52.729 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100255  
ATOM 1879e OH2 TIP3W3552 34.815 26.232 -43.220 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 18800  
Duplicate atom serial number found: 18801  
Duplicate atom serial number found: 18802  
Duplicate atom serial number found: 18803  
Duplicate atom serial number found: 18804  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100363  
ATOM 1880a OH2 TIP3W3589 -47.541 48.711 -24.056 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100364  
ATOM 1880b H1 TIP3W3589 -46.620 48.480 -24.179 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100365  
ATOM 1880c H2 TIP3W3589 -47.530 49.649 -23.869 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100366  
ATOM 1880d OH2 TIP3W3590 25.592 46.308 5.288 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100367  
ATOM 1880e H1 TIP3W3590 26.427 45.911 5.537 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18810  
Duplicate atom serial number found: 18811  
Duplicate atom serial number found: 18812  
Duplicate atom serial number found: 18813  
Duplicate atom serial number found: 18814  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100379  
ATOM 1881a H1 TIP3W3594 58.950 53.042 -34.594 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100380  
ATOM 1881b H2 TIP3W3594 59.411 52.272 -35.813 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100381  
ATOM 1881c OH2 TIP3W3595 -36.969 -4.597 -46.907 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100382  
ATOM 1881d H1 TIP3W3595 -36.387 -5.356 -46.869 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100383  
ATOM 1881e H2 TIP3W3595 -37.453 -4.707 -47.725 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18820  
Duplicate atom serial number found: 18821  
Duplicate atom serial number found: 18822  
Duplicate atom serial number found: 18823  
Duplicate atom serial number found: 18824  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100395  
ATOM 1882a H2 TIP3W3599 6.129 -51.641 -37.893 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100396  
ATOM 1882b OH2 TIP3W3600 -60.289 39.194 -28.369 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100397  
ATOM 1882c H1 TIP3W3600 -60.441 38.708 -27.559 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100398  
ATOM 1882d H2 TIP3W3600 -59.366 39.443 -28.329 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100399  
ATOM 1882e OH2 TIP3W3601 37.309 -42.130 -35.064 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18830  
Duplicate atom serial number found: 18831  
Duplicate atom serial number found: 18832  
Duplicate atom serial number found: 18833  
Duplicate atom serial number found: 18834  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100411  
ATOM 1883a OH2 TIP3W3605 -15.509 35.319 12.936 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100412  
ATOM 1883b H1 TIP3W3605 -15.946 36.128 13.203 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100413  
ATOM 1883c H2 TIP3W3605 -16.120 34.624 13.178 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100414  
ATOM 1883d OH2 TIP3W3606 -26.071 60.271 44.748 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100415  
ATOM 1883e H1 TIP3W3606 -26.662 60.565 45.441 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18840  
Duplicate atom serial number found: 18841  
Duplicate atom serial number found: 18842  
Duplicate atom serial number found: 18843  
Duplicate atom serial number found: 18844  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100427  
ATOM 1884a H1 TIP3W3611 35.605 26.778 33.642 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100428  
ATOM 1884b H2 TIP3W3611 34.844 26.648 32.339 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100429  
ATOM 1884c OH2 TIP3W3612 -33.691 -15.638 19.108 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100430  
ATOM 1884d H1 TIP3W3612 -34.031 -14.856 18.672 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100431  
ATOM 1884e H2 TIP3W3612 -33.284 -15.308 19.909 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18850  
Duplicate atom serial number found: 18851  
Duplicate atom serial number found: 18852  
Duplicate atom serial number found: 18853  
Duplicate atom serial number found: 18854  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100443  
ATOM 1885a H2 TIP3W3616 -30.766 -60.970 -48.669 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100444  
ATOM 1885b OH2 TIP3W3617 52.160 -30.193 -50.930 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100445  
ATOM 1885c H1 TIP3W3617 51.533 -29.847 -51.566 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100446  
ATOM 1885d H2 TIP3W3617 52.491 -30.995 -51.333 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100447  
ATOM 1885e OH2 TIP3W3618 39.460 -44.072 4.075 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18860  
Duplicate atom serial number found: 18861  
Duplicate atom serial number found: 18862  
Duplicate atom serial number found: 18863  
Duplicate atom serial number found: 18864  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100459  
ATOM 1886a OH2 TIP3W3622 -45.788 35.591 -60.773 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100460  
ATOM 1886b H1 TIP3W3622 -46.314 35.585 -59.973 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100461  
ATOM 1886c H2 TIP3W3622 -45.100 36.234 -60.603 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100462  
ATOM 1886d OH2 TIP3W3624 44.612 3.811 57.508 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100463  
ATOM 1886e H1 TIP3W3624 44.006 3.685 58.239 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18870  
Duplicate atom serial number found: 18871  
Duplicate atom serial number found: 18872  
Duplicate atom serial number found: 18873  
Duplicate atom serial number found: 18874  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100475  
ATOM 1887a H1 TIP3W3628 24.989 -5.476 -22.651 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100476  
ATOM 1887b H2 TIP3W3628 23.806 -5.402 -21.710 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100477  
ATOM 1887c OH2 TIP3W3629 37.297 53.587 -26.072 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100478  
ATOM 1887d H1 TIP3W3629 38.072 53.815 -25.559 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100479  
ATOM 1887e H2 TIP3W3629 36.561 53.767 -25.488 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18880  
Duplicate atom serial number found: 18881  
Duplicate atom serial number found: 18882  
Duplicate atom serial number found: 18883  
Duplicate atom serial number found: 18884  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100491  
ATOM 1888a H2 TIP3W3633 -57.630 -49.477 -60.370 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100492  
ATOM 1888b OH2 TIP3W3635 14.383 56.440 -12.437 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100493  
ATOM 1888c H1 TIP3W3635 13.535 56.367 -12.874 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100494  
ATOM 1888d H2 TIP3W3635 15.011 56.100 -13.074 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100495  
ATOM 1888e OH2 TIP3W3636 -32.584 12.401 -8.606 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18890  
Duplicate atom serial number found: 18891  
Duplicate atom serial number found: 18892  
Duplicate atom serial number found: 18893  
Duplicate atom serial number found: 18894  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100507  
ATOM 1889a OH2 TIP3W3640 -50.698 -10.317 37.085 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100508  
ATOM 1889b H1 TIP3W3640 -51.614 -10.566 37.209 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100509  
ATOM 1889c H2 TIP3W3640 -50.708 -9.360 37.083 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100510  
ATOM 1889d OH2 TIP3W3641 -49.042 23.231 25.598 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100511  
ATOM 1889e H1 TIP3W3641 -49.595 22.484 25.369 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 18900  
Duplicate atom serial number found: 18901  
Duplicate atom serial number found: 18902  
Duplicate atom serial number found: 18903  
Duplicate atom serial number found: 18904  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100619  
ATOM 1890a H1 TIP3W3679 59.854 -14.196 35.687 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100620  
ATOM 1890b H2 TIP3W3679 58.454 -14.733 35.895 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100621  
ATOM 1890c OH2 TIP3W3680 28.566 -60.334 34.138 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100622  
ATOM 1890d H1 TIP3W3680 28.811 -61.192 33.790 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100623  
ATOM 1890e H2 TIP3W3680 28.167 -60.526 34.987 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18910  
Duplicate atom serial number found: 18911  
Duplicate atom serial number found: 18912  
Duplicate atom serial number found: 18913  
Duplicate atom serial number found: 18914  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100635  
ATOM 1891a H2 TIP3W3685 22.822 -44.423 19.617 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100636  
ATOM 1891b OH2 TIP3W3686 30.072 -59.474 -46.923 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100637  
ATOM 1891c H1 TIP3W3686 30.508 -59.124 -47.700 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100638  
ATOM 1891d H2 TIP3W3686 29.593 -58.729 -46.560 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100639  
ATOM 1891e OH2 TIP3W3687 -37.149 -48.996 59.438 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18920  
Duplicate atom serial number found: 18921  
Duplicate atom serial number found: 18922  
Duplicate atom serial number found: 18923  
Duplicate atom serial number found: 18924  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100651  
ATOM 1892a OH2 TIP3W3691 45.235 -13.001 -14.834 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100652  
ATOM 1892b H1 TIP3W3691 45.514 -13.730 -14.280 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100653  
ATOM 1892c H2 TIP3W3691 46.017 -12.765 -15.332 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100654  
ATOM 1892d OH2 TIP3W3692 26.294 -45.519 -51.574 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100655  
ATOM 1892e H1 TIP3W3692 26.883 -46.239 -51.346 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18930  
Duplicate atom serial number found: 18931  
Duplicate atom serial number found: 18932  
Duplicate atom serial number found: 18933  
Duplicate atom serial number found: 18934  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100667  
ATOM 1893a H1 TIP3W3696 -15.183 -8.756 51.095 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100668  
ATOM 1893b H2 TIP3W3696 -15.601 -10.197 50.893 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100669  
ATOM 1893c OH2 TIP3W3697 23.014 27.037 33.756 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100670  
ATOM 1893d H1 TIP3W3697 22.576 27.860 33.538 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100671  
ATOM 1893e H2 TIP3W3697 23.503 26.808 32.966 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18940  
Duplicate atom serial number found: 18941  
Duplicate atom serial number found: 18942  
Duplicate atom serial number found: 18943  
Duplicate atom serial number found: 18944  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100683  
ATOM 1894a H2 TIP3W3702 35.240 -43.170 -58.562 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100684  
ATOM 1894b OH2 TIP3W3703 24.211 -14.177 56.920 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100685  
ATOM 1894c H1 TIP3W3703 24.043 -13.236 56.855 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100686  
ATOM 1894d H2 TIP3W3703 23.477 -14.584 56.461 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100687  
ATOM 1894e OH2 TIP3W3704 49.741 8.519 31.858 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18950  
Duplicate atom serial number found: 18951  
Duplicate atom serial number found: 18952  
Duplicate atom serial number found: 18953  
Duplicate atom serial number found: 18954  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100699  
ATOM 1895a OH2 TIP3W3708 58.184 31.349 -4.168 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100700  
ATOM 1895b H1 TIP3W3708 58.453 31.808 -4.964 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100701  
ATOM 1895c H2 TIP3W3708 57.490 31.895 -3.799 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100702  
ATOM 1895d OH2 TIP3W3709 -47.902 -12.554 25.664 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100703  
ATOM 1895e H1 TIP3W3709 -48.385 -12.193 24.921 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18960  
Duplicate atom serial number found: 18961  
Duplicate atom serial number found: 18962  
Duplicate atom serial number found: 18963  
Duplicate atom serial number found: 18964  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100715  
ATOM 1896a H1 TIP3W3713 29.516 -15.426 -32.859 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100716  
ATOM 1896b H2 TIP3W3713 30.288 -16.727 -32.921 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100717  
ATOM 1896c OH2 TIP3W3714 -30.815 -7.628 11.521 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100718  
ATOM 1896d H1 TIP3W3714 -30.433 -7.386 12.365 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100719  
ATOM 1896e H2 TIP3W3714 -31.632 -7.131 11.475 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18970  
Duplicate atom serial number found: 18971  
Duplicate atom serial number found: 18972  
Duplicate atom serial number found: 18973  
Duplicate atom serial number found: 18974  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100731  
ATOM 1897a H2 TIP3W3718 -18.110 -6.891 27.954 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100732  
ATOM 1897b OH2 TIP3W3719 -32.478 -56.007 -39.325 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100733  
ATOM 1897c H1 TIP3W3719 -31.696 -55.909 -38.782 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100734  
ATOM 1897d H2 TIP3W3719 -32.184 -56.517 -40.080 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100735  
ATOM 1897e OH2 TIP3W3720 -40.829 -11.973 15.110 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18980  
Duplicate atom serial number found: 18981  
Duplicate atom serial number found: 18982  
Duplicate atom serial number found: 18983  
Duplicate atom serial number found: 18984  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100747  
ATOM 1898a OH2 TIP3W3724 -42.895 -2.501 -60.579 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100748  
ATOM 1898b H1 TIP3W3724 -42.484 -2.149 -61.369 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100749  
ATOM 1898c H2 TIP3W3724 -42.163 -2.806 -60.043 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100750  
ATOM 1898d OH2 TIP3W3725 56.971 -13.608 39.141 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100751  
ATOM 1898e H1 TIP3W3725 57.002 -13.901 40.052 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 18990  
Duplicate atom serial number found: 18991  
Duplicate atom serial number found: 18992  
Duplicate atom serial number found: 18993  
Duplicate atom serial number found: 18994  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 100763  
ATOM 1899a H1 TIP3W3729 -28.337 15.981 25.044 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100764  
ATOM 1899b H2 TIP3W3729 -28.392 14.493 24.772 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100765  
ATOM 1899c OH2 TIP3W3730 51.635 39.254 -16.530 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100766  
ATOM 1899d H1 TIP3W3730 51.607 39.252 -17.487 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 100767  
ATOM 1899e H2 TIP3W3730 52.436 38.778 -16.312 0.00 0.00 WT5  
  
1633 messages similar to the above omitted  
Duplicate atom serial number found: 19000  
Duplicate atom serial number found: 19001  
Duplicate atom serial number found: 19002  
Duplicate atom serial number found: 19003  
Duplicate atom serial number found: 19004  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102411  
ATOM 1900a H2 TIP3W4322 28.683 18.602 -20.261 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102412  
ATOM 1900b OH2 TIP3W4323 28.954 59.236 -8.287 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102413  
ATOM 1900c H1 TIP3W4323 28.673 59.882 -8.936 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102414  
ATOM 1900d H2 TIP3W4323 28.887 59.694 -7.449 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102415  
ATOM 1900e OH2 TIP3W4324 -48.087 26.415 -39.103 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19010  
Duplicate atom serial number found: 19011  
Duplicate atom serial number found: 19012  
Duplicate atom serial number found: 19013  
Duplicate atom serial number found: 19014  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102427  
ATOM 1901a OH2 TIP3W4328 22.713 -21.147 -29.271 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102428  
ATOM 1901b H1 TIP3W4328 23.402 -20.538 -29.002 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102429  
ATOM 1901c H2 TIP3W4328 21.968 -20.929 -28.711 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102430  
ATOM 1901d OH2 TIP3W4329 54.331 -1.196 15.838 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102431  
ATOM 1901e H1 TIP3W4329 53.475 -1.066 15.430 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19020  
Duplicate atom serial number found: 19021  
Duplicate atom serial number found: 19022  
Duplicate atom serial number found: 19023  
Duplicate atom serial number found: 19024  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102443  
ATOM 1902a H1 TIP3W4333 18.657 -15.298 -18.380 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102444  
ATOM 1902b H2 TIP3W4333 19.215 -13.895 -18.493 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102445  
ATOM 1902c OH2 TIP3W4334 -48.117 -6.701 56.201 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102446  
ATOM 1902d H1 TIP3W4334 -48.628 -7.175 56.858 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102447  
ATOM 1902e H2 TIP3W4334 -47.750 -5.955 56.674 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19030  
Duplicate atom serial number found: 19031  
Duplicate atom serial number found: 19032  
Duplicate atom serial number found: 19033  
Duplicate atom serial number found: 19034  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102459  
ATOM 1903a H2 TIP3W4339 40.479 -17.514 38.807 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102460  
ATOM 1903b OH2 TIP3W4340 20.400 -16.907 -38.441 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102461  
ATOM 1903c H1 TIP3W4340 20.857 -17.714 -38.677 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102462  
ATOM 1903d H2 TIP3W4340 19.810 -16.741 -39.176 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102463  
ATOM 1903e OH2 TIP3W4341 37.239 44.393 -30.617 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19040  
Duplicate atom serial number found: 19041  
Duplicate atom serial number found: 19042  
Duplicate atom serial number found: 19043  
Duplicate atom serial number found: 19044  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102475  
ATOM 1904a OH2 TIP3W4346 -54.366 -5.039 47.044 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102476  
ATOM 1904b H1 TIP3W4346 -54.654 -5.472 47.847 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102477  
ATOM 1904c H2 TIP3W4346 -53.422 -4.926 47.157 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102478  
ATOM 1904d OH2 TIP3W4347 43.650 60.234 -4.099 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102479  
ATOM 1904e H1 TIP3W4347 42.775 60.453 -3.780 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19050  
Duplicate atom serial number found: 19051  
Duplicate atom serial number found: 19052  
Duplicate atom serial number found: 19053  
Duplicate atom serial number found: 19054  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102491  
ATOM 1905a H1 TIP3W4351 17.881 -17.282 58.955 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102492  
ATOM 1905b H2 TIP3W4351 17.526 -17.141 60.420 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102493  
ATOM 1905c OH2 TIP3W4352 -55.900 -6.466 -31.849 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102494  
ATOM 1905d H1 TIP3W4352 -55.114 -6.647 -31.334 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102495  
ATOM 1905e H2 TIP3W4352 -56.612 -6.865 -31.348 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19060  
Duplicate atom serial number found: 19061  
Duplicate atom serial number found: 19062  
Duplicate atom serial number found: 19063  
Duplicate atom serial number found: 19064  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102507  
ATOM 1906a H2 TIP3W4356 -49.580 55.763 -50.832 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102508  
ATOM 1906b OH2 TIP3W4357 -38.215 23.354 -54.995 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102509  
ATOM 1906c H1 TIP3W4357 -38.042 23.728 -55.859 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102510  
ATOM 1906d H2 TIP3W4357 -39.118 23.041 -55.045 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102511  
ATOM 1906e OH2 TIP3W4358 39.517 -21.081 -24.803 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19070  
Duplicate atom serial number found: 19071  
Duplicate atom serial number found: 19072  
Duplicate atom serial number found: 19073  
Duplicate atom serial number found: 19074  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102523  
ATOM 1907a OH2 TIP3W4362 21.591 -46.212 42.386 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102524  
ATOM 1907b H1 TIP3W4362 21.788 -47.094 42.703 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102525  
ATOM 1907c H2 TIP3W4362 22.180 -46.088 41.642 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102526  
ATOM 1907d OH2 TIP3W4363 -42.990 42.855 12.142 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102527  
ATOM 1907e H1 TIP3W4363 -42.521 43.239 12.883 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19080  
Duplicate atom serial number found: 19081  
Duplicate atom serial number found: 19082  
Duplicate atom serial number found: 19083  
Duplicate atom serial number found: 19084  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102539  
ATOM 1908a H1 TIP3W4367 59.294 -30.120 -25.882 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102540  
ATOM 1908b H2 TIP3W4367 59.953 -28.970 -25.152 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102541  
ATOM 1908c OH2 TIP3W4368 57.723 10.451 -41.542 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102542  
ATOM 1908d H1 TIP3W4368 58.110 9.577 -41.479 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102543  
ATOM 1908e H2 TIP3W4368 57.853 10.834 -40.674 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19090  
Duplicate atom serial number found: 19091  
Duplicate atom serial number found: 19092  
Duplicate atom serial number found: 19093  
Duplicate atom serial number found: 19094  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102555  
ATOM 1909a H2 TIP3W4373 -19.866 -24.154 2.463 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102556  
ATOM 1909b OH2 TIP3W4374 45.572 40.994 -39.202 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102557  
ATOM 1909c H1 TIP3W4374 45.442 41.497 -38.398 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102558  
ATOM 1909d H2 TIP3W4374 45.495 41.639 -39.904 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102559  
ATOM 1909e OH2 TIP3W4375 48.162 28.581 -37.830 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19100  
Duplicate atom serial number found: 19101  
Duplicate atom serial number found: 19102  
Duplicate atom serial number found: 19103  
Duplicate atom serial number found: 19104  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102667  
ATOM 1910a OH2 TIP3W4414 -49.508 4.945 10.465 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102668  
ATOM 1910b H1 TIP3W4414 -50.023 4.170 10.241 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102669  
ATOM 1910c H2 TIP3W4414 -50.046 5.682 10.176 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102670  
ATOM 1910d OH2 TIP3W4415 -35.235 26.768 -32.549 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102671  
ATOM 1910e H1 TIP3W4415 -34.517 26.365 -32.060 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19110  
Duplicate atom serial number found: 19111  
Duplicate atom serial number found: 19112  
Duplicate atom serial number found: 19113  
Duplicate atom serial number found: 19114  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102683  
ATOM 1911a H1 TIP3W4419 -0.988 11.434 -51.136 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102684  
ATOM 1911b H2 TIP3W4419 -2.223 10.586 -51.354 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102685  
ATOM 1911c OH2 TIP3W4421 -33.629 -0.997 -21.270 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102686  
ATOM 1911d H1 TIP3W4421 -33.723 -0.516 -22.092 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102687  
ATOM 1911e H2 TIP3W4421 -34.143 -0.495 -20.638 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19120  
Duplicate atom serial number found: 19121  
Duplicate atom serial number found: 19122  
Duplicate atom serial number found: 19123  
Duplicate atom serial number found: 19124  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102699  
ATOM 1912a H2 TIP3W4425 -6.248 -3.322 -38.598 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102700  
ATOM 1912b OH2 TIP3W4426 -27.220 -46.121 -9.897 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102701  
ATOM 1912c H1 TIP3W4426 -26.454 -46.099 -10.469 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102702  
ATOM 1912d H2 TIP3W4426 -27.937 -46.399 -10.467 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102703  
ATOM 1912e OH2 TIP3W4427 18.483 21.675 -46.039 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19130  
Duplicate atom serial number found: 19131  
Duplicate atom serial number found: 19132  
Duplicate atom serial number found: 19133  
Duplicate atom serial number found: 19134  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102715  
ATOM 1913a OH2 TIP3W4431 -48.527 12.382 -35.089 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102716  
ATOM 1913b H1 TIP3W4431 -48.431 11.774 -35.823 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102717  
ATOM 1913c H2 TIP3W4431 -48.179 13.211 -35.417 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102718  
ATOM 1913d OH2 TIP3W4432 -52.839 17.497 39.854 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102719  
ATOM 1913e H1 TIP3W4432 -52.564 18.306 40.284 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19140  
Duplicate atom serial number found: 19141  
Duplicate atom serial number found: 19142  
Duplicate atom serial number found: 19143  
Duplicate atom serial number found: 19144  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102731  
ATOM 1914a H1 TIP3W4437 -32.925 17.434 -13.841 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102732  
ATOM 1914b H2 TIP3W4437 -31.607 16.974 -14.429 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102733  
ATOM 1914c OH2 TIP3W4438 3.428 10.612 -34.182 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102734  
ATOM 1914d H1 TIP3W4438 2.603 10.694 -34.661 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102735  
ATOM 1914e H2 TIP3W4438 3.559 11.472 -33.782 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19150  
Duplicate atom serial number found: 19151  
Duplicate atom serial number found: 19152  
Duplicate atom serial number found: 19153  
Duplicate atom serial number found: 19154  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102747  
ATOM 1915a H2 TIP3W4442 25.062 -20.709 -51.224 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102748  
ATOM 1915b OH2 TIP3W4443 -23.913 -31.714 9.555 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102749  
ATOM 1915c H1 TIP3W4443 -23.263 -31.432 10.199 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102750  
ATOM 1915d H2 TIP3W4443 -23.398 -31.982 8.795 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102751  
ATOM 1915e OH2 TIP3W4444 59.728 23.226 21.004 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19160  
Duplicate atom serial number found: 19161  
Duplicate atom serial number found: 19162  
Duplicate atom serial number found: 19163  
Duplicate atom serial number found: 19164  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102763  
ATOM 1916a OH2 TIP3W4448 6.415 26.996 11.193 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102764  
ATOM 1916b H1 TIP3W4448 6.946 27.149 11.975 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102765  
ATOM 1916c H2 TIP3W4448 5.864 27.776 11.121 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102766  
ATOM 1916d OH2 TIP3W4449 44.861 -34.970 -24.588 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102767  
ATOM 1916e H1 TIP3W4449 44.743 -35.871 -24.287 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19170  
Duplicate atom serial number found: 19171  
Duplicate atom serial number found: 19172  
Duplicate atom serial number found: 19173  
Duplicate atom serial number found: 19174  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102779  
ATOM 1917a H1 TIP3W4453 -50.451 60.268 -57.707 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102780  
ATOM 1917b H2 TIP3W4453 -50.818 60.186 -56.240 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102781  
ATOM 1917c OH2 TIP3W4454 -39.560 -3.340 -19.096 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102782  
ATOM 1917d H1 TIP3W4454 -39.553 -3.105 -20.024 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102783  
ATOM 1917e H2 TIP3W4454 -38.648 -3.254 -18.819 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19180  
Duplicate atom serial number found: 19181  
Duplicate atom serial number found: 19182  
Duplicate atom serial number found: 19183  
Duplicate atom serial number found: 19184  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102795  
ATOM 1918a H2 TIP3W4458 -0.441 14.448 43.746 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102796  
ATOM 1918b OH2 TIP3W4459 55.954 -25.621 56.430 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102797  
ATOM 1918c H1 TIP3W4459 55.865 -24.733 56.776 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102798  
ATOM 1918d H2 TIP3W4459 55.327 -26.139 56.935 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102799  
ATOM 1918e OH2 TIP3W4460 -37.870 -32.199 -35.818 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19190  
Duplicate atom serial number found: 19191  
Duplicate atom serial number found: 19192  
Duplicate atom serial number found: 19193  
Duplicate atom serial number found: 19194  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102811  
ATOM 1919a OH2 TIP3W4464 -0.660 24.147 -46.263 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102812  
ATOM 1919b H1 TIP3W4464 -1.611 24.072 -46.175 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102813  
ATOM 1919c H2 TIP3W4464 -0.527 24.469 -47.155 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102814  
ATOM 1919d OH2 TIP3W4465 -0.793 53.679 -28.225 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102815  
ATOM 1919e H1 TIP3W4465 -1.680 53.910 -28.504 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19200  
Duplicate atom serial number found: 19201  
Duplicate atom serial number found: 19202  
Duplicate atom serial number found: 19203  
Duplicate atom serial number found: 19204  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102923  
ATOM 1920a H1 TIP3W4503 -27.889 19.520 -47.664 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102924  
ATOM 1920b H2 TIP3W4503 -28.428 20.402 -48.770 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102925  
ATOM 1920c OH2 TIP3W4504 2.402 -53.194 16.978 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102926  
ATOM 1920d H1 TIP3W4504 3.254 -53.383 16.587 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102927  
ATOM 1920e H2 TIP3W4504 2.311 -52.243 16.909 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19210  
Duplicate atom serial number found: 19211  
Duplicate atom serial number found: 19212  
Duplicate atom serial number found: 19213  
Duplicate atom serial number found: 19214  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102939  
ATOM 1921a H2 TIP3W4508 13.915 7.458 52.325 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102940  
ATOM 1921b OH2 TIP3W4509 24.511 10.775 -60.968 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102941  
ATOM 1921c H1 TIP3W4509 24.779 9.860 -60.881 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102942  
ATOM 1921d H2 TIP3W4509 23.774 10.752 -61.580 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102943  
ATOM 1921e OH2 TIP3W4510 -54.336 43.917 -8.749 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19220  
Duplicate atom serial number found: 19221  
Duplicate atom serial number found: 19222  
Duplicate atom serial number found: 19223  
Duplicate atom serial number found: 19224  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102955  
ATOM 1922a OH2 TIP3W4514 6.658 39.640 -34.784 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102956  
ATOM 1922b H1 TIP3W4514 5.989 38.976 -34.947 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102957  
ATOM 1922c H2 TIP3W4514 7.380 39.160 -34.379 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102958  
ATOM 1922d OH2 TIP3W4515 -23.761 39.019 -59.164 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102959  
ATOM 1922e H1 TIP3W4515 -24.116 39.864 -58.887 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19230  
Duplicate atom serial number found: 19231  
Duplicate atom serial number found: 19232  
Duplicate atom serial number found: 19233  
Duplicate atom serial number found: 19234  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102971  
ATOM 1923a H1 TIP3W4519 34.335 -43.693 -22.310 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102972  
ATOM 1923b H2 TIP3W4519 34.600 -42.865 -23.550 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102973  
ATOM 1923c OH2 TIP3W4520 57.922 -8.863 -15.041 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102974  
ATOM 1923d H1 TIP3W4520 57.697 -8.659 -15.949 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102975  
ATOM 1923e H2 TIP3W4520 57.816 -9.812 -14.975 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19240  
Duplicate atom serial number found: 19241  
Duplicate atom serial number found: 19242  
Duplicate atom serial number found: 19243  
Duplicate atom serial number found: 19244  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 102987  
ATOM 1924a H2 TIP3W4524 -23.868 43.641 -41.128 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102988  
ATOM 1924b OH2 TIP3W4525 41.615 -19.851 -50.234 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102989  
ATOM 1924c H1 TIP3W4525 40.968 -19.147 -50.184 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102990  
ATOM 1924d H2 TIP3W4525 41.094 -20.653 -50.268 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 102991  
ATOM 1924e OH2 TIP3W4526 47.631 58.256 -12.140 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19250  
Duplicate atom serial number found: 19251  
Duplicate atom serial number found: 19252  
Duplicate atom serial number found: 19253  
Duplicate atom serial number found: 19254  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103003  
ATOM 1925a OH2 TIP3W4530 2.412 -51.438 46.899 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103004  
ATOM 1925b H1 TIP3W4530 3.189 -50.968 47.201 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103005  
ATOM 1925c H2 TIP3W4530 2.757 -52.193 46.423 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103006  
ATOM 1925d OH2 TIP3W4531 23.703 -52.295 -27.246 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103007  
ATOM 1925e H1 TIP3W4531 23.408 -51.690 -27.926 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19260  
Duplicate atom serial number found: 19261  
Duplicate atom serial number found: 19262  
Duplicate atom serial number found: 19263  
Duplicate atom serial number found: 19264  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103019  
ATOM 1926a H1 TIP3W4535 -45.209 -11.177 -11.346 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103020  
ATOM 1926b H2 TIP3W4535 -44.126 -11.581 -10.368 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103021  
ATOM 1926c OH2 TIP3W4536 -43.412 -14.541 -39.300 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103022  
ATOM 1926d H1 TIP3W4536 -42.985 -15.338 -38.982 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103023  
ATOM 1926e H2 TIP3W4536 -43.345 -14.597 -40.253 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19270  
Duplicate atom serial number found: 19271  
Duplicate atom serial number found: 19272  
Duplicate atom serial number found: 19273  
Duplicate atom serial number found: 19274  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103035  
ATOM 1927a H2 TIP3W4541 35.436 11.563 14.302 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103036  
ATOM 1927b OH2 TIP3W4543 -26.350 3.527 22.871 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103037  
ATOM 1927c H1 TIP3W4543 -26.320 4.483 22.828 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103038  
ATOM 1927d H2 TIP3W4543 -25.440 3.264 23.005 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103039  
ATOM 1927e OH2 TIP3W4544 -40.016 -9.658 -2.422 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19280  
Duplicate atom serial number found: 19281  
Duplicate atom serial number found: 19282  
Duplicate atom serial number found: 19283  
Duplicate atom serial number found: 19284  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103051  
ATOM 1928a OH2 TIP3W4548 -10.400 50.351 58.859 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103052  
ATOM 1928b H1 TIP3W4548 -11.228 49.906 59.040 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103053  
ATOM 1928c H2 TIP3W4548 -10.305 50.982 59.573 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103054  
ATOM 1928d OH2 TIP3W4549 -46.002 25.141 42.282 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103055  
ATOM 1928e H1 TIP3W4549 -45.974 24.441 42.934 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19290  
Duplicate atom serial number found: 19291  
Duplicate atom serial number found: 19292  
Duplicate atom serial number found: 19293  
Duplicate atom serial number found: 19294  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103067  
ATOM 1929a H1 TIP3W4553 40.440 -36.162 -26.236 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103068  
ATOM 1929b H2 TIP3W4553 39.151 -36.382 -27.000 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103069  
ATOM 1929c OH2 TIP3W4554 -34.128 -11.562 -21.903 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103070  
ATOM 1929d H1 TIP3W4554 -34.872 -11.403 -22.484 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103071  
ATOM 1929e H2 TIP3W4554 -33.363 -11.305 -22.417 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19300  
Duplicate atom serial number found: 19301  
Duplicate atom serial number found: 19302  
Duplicate atom serial number found: 19303  
Duplicate atom serial number found: 19304  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103179  
ATOM 1930a H2 TIP3W4591 28.042 -52.912 -8.058 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103180  
ATOM 1930b OH2 TIP3W4593 -54.553 52.450 -25.242 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103181  
ATOM 1930c H1 TIP3W4593 -54.409 51.536 -24.997 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103182  
ATOM 1930d H2 TIP3W4593 -55.370 52.438 -25.742 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103183  
ATOM 1930e OH2 TIP3W4594 40.790 44.108 -24.611 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19310  
Duplicate atom serial number found: 19311  
Duplicate atom serial number found: 19312  
Duplicate atom serial number found: 19313  
Duplicate atom serial number found: 19314  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103195  
ATOM 1931a OH2 TIP3W4598 -56.672 -24.432 -44.511 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103196  
ATOM 1931b H1 TIP3W4598 -56.480 -25.358 -44.366 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103197  
ATOM 1931c H2 TIP3W4598 -57.620 -24.363 -44.396 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103198  
ATOM 1931d OH2 TIP3W4599 47.852 -29.673 -56.801 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103199  
ATOM 1931e H1 TIP3W4599 47.933 -30.029 -57.686 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19320  
Duplicate atom serial number found: 19321  
Duplicate atom serial number found: 19322  
Duplicate atom serial number found: 19323  
Duplicate atom serial number found: 19324  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103211  
ATOM 1932a H1 TIP3W4603 -23.381 1.278 -2.814 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103212  
ATOM 1932b H2 TIP3W4603 -24.133 2.086 -1.778 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103213  
ATOM 1932c OH2 TIP3W4604 19.999 -25.457 -17.556 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103214  
ATOM 1932d H1 TIP3W4604 20.404 -25.364 -18.418 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103215  
ATOM 1932e H2 TIP3W4604 20.689 -25.824 -17.005 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19330  
Duplicate atom serial number found: 19331  
Duplicate atom serial number found: 19332  
Duplicate atom serial number found: 19333  
Duplicate atom serial number found: 19334  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103227  
ATOM 1933a H2 TIP3W4608 59.463 -44.739 -40.522 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103228  
ATOM 1933b OH2 TIP3W4609 38.300 10.348 -32.892 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103229  
ATOM 1933c H1 TIP3W4609 38.972 9.968 -33.458 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103230  
ATOM 1933d H2 TIP3W4609 38.734 11.090 -32.470 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103231  
ATOM 1933e OH2 TIP3W4610 31.227 -36.731 -5.701 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19340  
Duplicate atom serial number found: 19341  
Duplicate atom serial number found: 19342  
Duplicate atom serial number found: 19343  
Duplicate atom serial number found: 19344  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103243  
ATOM 1934a OH2 TIP3W4614 -13.889 -15.192 -50.804 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103244  
ATOM 1934b H1 TIP3W4614 -13.474 -14.345 -50.968 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103245  
ATOM 1934c H2 TIP3W4614 -14.412 -15.054 -50.014 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103246  
ATOM 1934d OH2 TIP3W4615 38.924 -19.301 -49.341 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103247  
ATOM 1934e H1 TIP3W4615 38.061 -19.541 -49.003 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19350  
Duplicate atom serial number found: 19351  
Duplicate atom serial number found: 19352  
Duplicate atom serial number found: 19353  
Duplicate atom serial number found: 19354  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103259  
ATOM 1935a H1 TIP3W4620 -19.882 -44.072 42.139 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103260  
ATOM 1935b H2 TIP3W4620 -20.467 -42.986 43.018 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103261  
ATOM 1935c OH2 TIP3W4621 33.405 -17.822 21.539 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103262  
ATOM 1935d H1 TIP3W4621 32.853 -17.630 20.781 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103263  
ATOM 1935e H2 TIP3W4621 33.442 -18.778 21.572 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19360  
Duplicate atom serial number found: 19361  
Duplicate atom serial number found: 19362  
Duplicate atom serial number found: 19363  
Duplicate atom serial number found: 19364  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103275  
ATOM 1936a H2 TIP3W4625 17.762 16.196 46.690 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103276  
ATOM 1936b OH2 TIP3W4626 -53.164 4.509 -56.079 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103277  
ATOM 1936c H1 TIP3W4626 -53.480 3.974 -55.351 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103278  
ATOM 1936d H2 TIP3W4626 -52.250 4.692 -55.863 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103279  
ATOM 1936e OH2 TIP3W4627 28.948 -6.265 0.436 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19370  
Duplicate atom serial number found: 19371  
Duplicate atom serial number found: 19372  
Duplicate atom serial number found: 19373  
Duplicate atom serial number found: 19374  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103291  
ATOM 1937a OH2 TIP3W4631 -11.049 7.210 56.456 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103292  
ATOM 1937b H1 TIP3W4631 -11.123 8.164 56.503 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103293  
ATOM 1937c H2 TIP3W4631 -11.926 6.891 56.668 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103294  
ATOM 1937d OH2 TIP3W4632 19.252 44.892 -9.207 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103295  
ATOM 1937e H1 TIP3W4632 18.597 44.821 -9.901 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19380  
Duplicate atom serial number found: 19381  
Duplicate atom serial number found: 19382  
Duplicate atom serial number found: 19383  
Duplicate atom serial number found: 19384  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103307  
ATOM 1938a H1 TIP3W4636 2.598 -40.223 -7.201 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103308  
ATOM 1938b H2 TIP3W4636 1.565 -41.329 -7.196 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103309  
ATOM 1938c OH2 TIP3W4637 -41.490 -53.204 20.412 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103310  
ATOM 1938d H1 TIP3W4637 -41.085 -52.337 20.442 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103311  
ATOM 1938e H2 TIP3W4637 -41.015 -53.714 21.068 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19390  
Duplicate atom serial number found: 19391  
Duplicate atom serial number found: 19392  
Duplicate atom serial number found: 19393  
Duplicate atom serial number found: 19394  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103323  
ATOM 1939a H2 TIP3W4641 -42.556 32.893 -45.468 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103324  
ATOM 1939b OH2 TIP3W4642 51.003 46.537 0.407 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103325  
ATOM 1939c H1 TIP3W4642 51.384 45.724 0.739 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103326  
ATOM 1939d H2 TIP3W4642 51.698 46.928 -0.122 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103327  
ATOM 1939e OH2 TIP3W4643 -20.221 22.310 -55.722 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19400  
Duplicate atom serial number found: 19401  
Duplicate atom serial number found: 19402  
Duplicate atom serial number found: 19403  
Duplicate atom serial number found: 19404  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103435  
ATOM 1940a OH2 TIP3W4679 53.835 33.472 -26.938 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103436  
ATOM 1940b H1 TIP3W4679 53.543 33.826 -27.778 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103437  
ATOM 1940c H2 TIP3W4679 54.789 33.437 -27.011 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103438  
ATOM 1940d OH2 TIP3W4680 32.917 -39.113 46.359 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103439  
ATOM 1940e H1 TIP3W4680 32.468 -39.080 47.203 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19410  
Duplicate atom serial number found: 19411  
Duplicate atom serial number found: 19412  
Duplicate atom serial number found: 19413  
Duplicate atom serial number found: 19414  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103451  
ATOM 1941a H1 TIP3W4685 21.229 -4.844 -57.322 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103452  
ATOM 1941b H2 TIP3W4685 22.566 -4.213 -56.999 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103453  
ATOM 1941c OH2 TIP3W4686 22.883 54.648 -27.813 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103454  
ATOM 1941d H1 TIP3W4686 22.196 54.183 -27.334 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103455  
ATOM 1941e H2 TIP3W4686 23.697 54.371 -27.394 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19420  
Duplicate atom serial number found: 19421  
Duplicate atom serial number found: 19422  
Duplicate atom serial number found: 19423  
Duplicate atom serial number found: 19424  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103467  
ATOM 1942a H2 TIP3W4690 19.423 54.386 -58.037 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103468  
ATOM 1942b OH2 TIP3W4691 8.440 -16.765 43.752 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103469  
ATOM 1942c H1 TIP3W4691 8.903 -16.281 43.069 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103470  
ATOM 1942d H2 TIP3W4691 8.268 -17.623 43.364 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103471  
ATOM 1942e OH2 TIP3W4692 -30.987 55.055 -20.730 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19430  
Duplicate atom serial number found: 19431  
Duplicate atom serial number found: 19432  
Duplicate atom serial number found: 19433  
Duplicate atom serial number found: 19434  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103483  
ATOM 1943a OH2 TIP3W4697 36.670 4.974 -40.206 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103484  
ATOM 1943b H1 TIP3W4697 36.381 5.501 -39.460 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103485  
ATOM 1943c H2 TIP3W4697 37.329 5.515 -40.641 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103486  
ATOM 1943d OH2 TIP3W4698 28.673 35.489 -16.682 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103487  
ATOM 1943e H1 TIP3W4698 27.721 35.576 -16.639 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19440  
Duplicate atom serial number found: 19441  
Duplicate atom serial number found: 19442  
Duplicate atom serial number found: 19443  
Duplicate atom serial number found: 19444  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103499  
ATOM 1944a H1 TIP3W4702 -52.364 12.116 5.820 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103500  
ATOM 1944b H2 TIP3W4702 -53.203 11.723 7.017 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103501  
ATOM 1944c OH2 TIP3W4703 29.675 -35.258 -37.616 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103502  
ATOM 1944d H1 TIP3W4703 30.298 -35.958 -37.811 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103503  
ATOM 1944e H2 TIP3W4703 29.925 -34.544 -38.203 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19450  
Duplicate atom serial number found: 19451  
Duplicate atom serial number found: 19452  
Duplicate atom serial number found: 19453  
Duplicate atom serial number found: 19454  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103515  
ATOM 1945a H2 TIP3W4707 -54.104 -23.188 12.079 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103516  
ATOM 1945b OH2 TIP3W4708 -56.761 -15.660 -14.532 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103517  
ATOM 1945c H1 TIP3W4708 -56.874 -16.353 -13.881 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103518  
ATOM 1945d H2 TIP3W4708 -57.556 -15.699 -15.064 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103519  
ATOM 1945e OH2 TIP3W4710 -56.417 -2.204 18.387 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19460  
Duplicate atom serial number found: 19461  
Duplicate atom serial number found: 19462  
Duplicate atom serial number found: 19463  
Duplicate atom serial number found: 19464  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103531  
ATOM 1946a OH2 TIP3W4714 0.104 -27.232 26.471 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103532  
ATOM 1946b H1 TIP3W4714 0.172 -26.541 25.813 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103533  
ATOM 1946c H2 TIP3W4714 -0.426 -26.847 27.170 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103534  
ATOM 1946d OH2 TIP3W4715 -44.951 12.009 -55.155 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103535  
ATOM 1946e H1 TIP3W4715 -45.775 11.840 -54.697 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19470  
Duplicate atom serial number found: 19471  
Duplicate atom serial number found: 19472  
Duplicate atom serial number found: 19473  
Duplicate atom serial number found: 19474  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103547  
ATOM 1947a H1 TIP3W4719 2.302 -13.475 -41.792 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103548  
ATOM 1947b H2 TIP3W4719 2.712 -14.028 -40.444 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103549  
ATOM 1947c OH2 TIP3W4720 -4.591 -42.837 1.204 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103550  
ATOM 1947d H1 TIP3W4720 -4.596 -43.519 0.532 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103551  
ATOM 1947e H2 TIP3W4720 -5.513 -42.711 1.425 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19480  
Duplicate atom serial number found: 19481  
Duplicate atom serial number found: 19482  
Duplicate atom serial number found: 19483  
Duplicate atom serial number found: 19484  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103563  
ATOM 1948a H2 TIP3W4724 -18.638 -24.893 11.731 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103564  
ATOM 1948b OH2 TIP3W4725 -14.949 -36.532 36.398 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103565  
ATOM 1948c H1 TIP3W4725 -14.758 -37.453 36.221 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103566  
ATOM 1948d H2 TIP3W4725 -15.855 -36.530 36.707 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103567  
ATOM 1948e OH2 TIP3W4726 -19.901 22.093 -40.501 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19490  
Duplicate atom serial number found: 19491  
Duplicate atom serial number found: 19492  
Duplicate atom serial number found: 19493  
Duplicate atom serial number found: 19494  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103579  
ATOM 1949a OH2 TIP3W4730 25.191 -38.296 -61.158 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103580  
ATOM 1949b H1 TIP3W4730 25.015 -38.041 -60.252 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103581  
ATOM 1949c H2 TIP3W4730 25.043 -37.498 -61.665 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103582  
ATOM 1949d OH2 TIP3W4731 47.819 -10.436 -15.471 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103583  
ATOM 1949e H1 TIP3W4731 48.775 -10.470 -15.490 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19500  
Duplicate atom serial number found: 19501  
Duplicate atom serial number found: 19502  
Duplicate atom serial number found: 19503  
Duplicate atom serial number found: 19504  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103691  
ATOM 1950a H1 TIP3W4769 -7.365 10.311 -43.297 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103692  
ATOM 1950b H2 TIP3W4769 -8.427 9.882 -44.287 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103693  
ATOM 1950c OH2 TIP3W4770 -36.626 29.498 6.668 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103694  
ATOM 1950d H1 TIP3W4770 -35.712 29.620 6.926 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103695  
ATOM 1950e H2 TIP3W4770 -36.873 28.656 7.050 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19510  
Duplicate atom serial number found: 19511  
Duplicate atom serial number found: 19512  
Duplicate atom serial number found: 19513  
Duplicate atom serial number found: 19514  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103707  
ATOM 1951a H2 TIP3W4774 55.264 21.965 -54.377 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103708  
ATOM 1951b OH2 TIP3W4775 28.432 -26.040 -2.909 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103709  
ATOM 1951c H1 TIP3W4775 28.004 -25.454 -2.285 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103710  
ATOM 1951d H2 TIP3W4775 28.683 -25.472 -3.638 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103711  
ATOM 1951e OH2 TIP3W4777 17.172 -51.979 5.908 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19520  
Duplicate atom serial number found: 19521  
Duplicate atom serial number found: 19522  
Duplicate atom serial number found: 19523  
Duplicate atom serial number found: 19524  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103723  
ATOM 1952a OH2 TIP3W4781 -41.358 -59.782 -2.719 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103724  
ATOM 1952b H1 TIP3W4781 -42.020 -59.923 -3.395 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103725  
ATOM 1952c H2 TIP3W4781 -41.859 -59.533 -1.942 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103726  
ATOM 1952d OH2 TIP3W4782 47.264 -44.172 -58.122 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103727  
ATOM 1952e H1 TIP3W4782 47.120 -45.099 -57.932 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19530  
Duplicate atom serial number found: 19531  
Duplicate atom serial number found: 19532  
Duplicate atom serial number found: 19533  
Duplicate atom serial number found: 19534  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103739  
ATOM 1953a H1 TIP3W4786 -50.159 -35.232 -47.236 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103740  
ATOM 1953b H2 TIP3W4786 -51.288 -35.910 -46.489 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103741  
ATOM 1953c OH2 TIP3W4787 5.329 3.417 -28.217 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103742  
ATOM 1953d H1 TIP3W4787 4.628 2.945 -27.769 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103743  
ATOM 1953e H2 TIP3W4787 4.885 4.136 -28.667 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19540  
Duplicate atom serial number found: 19541  
Duplicate atom serial number found: 19542  
Duplicate atom serial number found: 19543  
Duplicate atom serial number found: 19544  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103755  
ATOM 1954a H2 TIP3W4792 5.390 42.552 -7.869 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103756  
ATOM 1954b OH2 TIP3W4793 35.997 -2.637 -45.238 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103757  
ATOM 1954c H1 TIP3W4793 36.858 -2.315 -44.969 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103758  
ATOM 1954d H2 TIP3W4793 35.807 -2.166 -46.049 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103759  
ATOM 1954e OH2 TIP3W4794 -10.081 54.744 -53.997 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19550  
Duplicate atom serial number found: 19551  
Duplicate atom serial number found: 19552  
Duplicate atom serial number found: 19553  
Duplicate atom serial number found: 19554  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103771  
ATOM 1955a OH2 TIP3W4799 2.808 -38.964 26.331 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103772  
ATOM 1955b H1 TIP3W4799 2.791 -38.057 26.026 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103773  
ATOM 1955c H2 TIP3W4799 3.686 -39.274 26.112 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103774  
ATOM 1955d OH2 TIP3W4800 7.526 -28.975 -25.309 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103775  
ATOM 1955e H1 TIP3W4800 7.948 -28.490 -26.018 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19560  
Duplicate atom serial number found: 19561  
Duplicate atom serial number found: 19562  
Duplicate atom serial number found: 19563  
Duplicate atom serial number found: 19564  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103787  
ATOM 1956a H1 TIP3W4804 19.937 -16.380 -57.436 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103788  
ATOM 1956b H2 TIP3W4804 21.412 -16.048 -57.364 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103789  
ATOM 1956c OH2 TIP3W4805 51.534 36.408 -2.095 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103790  
ATOM 1956d H1 TIP3W4805 51.754 35.480 -2.014 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103791  
ATOM 1956e H2 TIP3W4805 50.582 36.420 -2.197 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19570  
Duplicate atom serial number found: 19571  
Duplicate atom serial number found: 19572  
Duplicate atom serial number found: 19573  
Duplicate atom serial number found: 19574  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103803  
ATOM 1957a H2 TIP3W4809 54.823 32.366 -34.305 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103804  
ATOM 1957b OH2 TIP3W4811 17.251 15.528 -15.240 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103805  
ATOM 1957c H1 TIP3W4811 17.803 14.948 -14.715 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103806  
ATOM 1957d H2 TIP3W4811 17.832 15.857 -15.926 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103807  
ATOM 1957e OH2 TIP3W4812 -47.973 -27.808 -52.038 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19580  
Duplicate atom serial number found: 19581  
Duplicate atom serial number found: 19582  
Duplicate atom serial number found: 19583  
Duplicate atom serial number found: 19584  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103819  
ATOM 1958a OH2 TIP3W4816 -30.100 16.257 -25.414 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103820  
ATOM 1958b H1 TIP3W4816 -31.030 16.278 -25.639 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103821  
ATOM 1958c H2 TIP3W4816 -29.750 15.516 -25.909 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103822  
ATOM 1958d OH2 TIP3W4817 -12.131 -26.066 -7.436 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103823  
ATOM 1958e H1 TIP3W4817 -12.088 -25.768 -6.527 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19590  
Duplicate atom serial number found: 19591  
Duplicate atom serial number found: 19592  
Duplicate atom serial number found: 19593  
Duplicate atom serial number found: 19594  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103835  
ATOM 1959a H1 TIP3W4821 27.416 -60.786 15.449 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103836  
ATOM 1959b H2 TIP3W4821 27.597 -59.321 15.111 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103837  
ATOM 1959c OH2 TIP3W4822 -17.353 54.354 -14.239 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103838  
ATOM 1959d H1 TIP3W4822 -17.389 54.838 -13.414 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103839  
ATOM 1959e H2 TIP3W4822 -16.428 54.129 -14.345 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19600  
Duplicate atom serial number found: 19601  
Duplicate atom serial number found: 19602  
Duplicate atom serial number found: 19603  
Duplicate atom serial number found: 19604  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103947  
ATOM 1960a H2 TIP3W4860 46.256 -54.335 -39.302 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103948  
ATOM 1960b OH2 TIP3W4861 37.737 45.374 -23.783 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103949  
ATOM 1960c H1 TIP3W4861 37.093 44.992 -24.378 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103950  
ATOM 1960d H2 TIP3W4861 37.791 44.753 -23.057 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103951  
ATOM 1960e OH2 TIP3W4862 53.596 22.395 -45.257 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19610  
Duplicate atom serial number found: 19611  
Duplicate atom serial number found: 19612  
Duplicate atom serial number found: 19613  
Duplicate atom serial number found: 19614  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103963  
ATOM 1961a OH2 TIP3W4867 40.707 50.634 -6.653 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103964  
ATOM 1961b H1 TIP3W4867 41.274 49.947 -6.303 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103965  
ATOM 1961c H2 TIP3W4867 41.225 51.435 -6.575 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103966  
ATOM 1961d OH2 TIP3W4868 -46.651 -2.415 -52.379 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103967  
ATOM 1961e H1 TIP3W4868 -46.431 -1.819 -51.663 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19620  
Duplicate atom serial number found: 19621  
Duplicate atom serial number found: 19622  
Duplicate atom serial number found: 19623  
Duplicate atom serial number found: 19624  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103979  
ATOM 1962a H1 TIP3W4872 -22.972 -24.476 7.273 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103980  
ATOM 1962b H2 TIP3W4872 -23.551 -23.807 8.501 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103981  
ATOM 1962c OH2 TIP3W4873 -15.906 -1.532 25.316 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103982  
ATOM 1962d H1 TIP3W4873 -15.523 -1.545 26.193 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103983  
ATOM 1962e H2 TIP3W4873 -16.165 -2.439 25.154 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19630  
Duplicate atom serial number found: 19631  
Duplicate atom serial number found: 19632  
Duplicate atom serial number found: 19633  
Duplicate atom serial number found: 19634  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 103995  
ATOM 1963a H2 TIP3W4877 -35.269 -59.044 -15.720 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103996  
ATOM 1963b OH2 TIP3W4878 15.365 37.276 49.555 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103997  
ATOM 1963c H1 TIP3W4878 14.810 37.383 50.328 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103998  
ATOM 1963d H2 TIP3W4878 14.982 36.536 49.085 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 103999  
ATOM 1963e OH2 TIP3W4879 -34.148 20.492 36.549 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19640  
Duplicate atom serial number found: 19641  
Duplicate atom serial number found: 19642  
Duplicate atom serial number found: 19643  
Duplicate atom serial number found: 19644  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104011  
ATOM 1964a OH2 TIP3W4883 4.980 20.373 -44.372 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104012  
ATOM 1964b H1 TIP3W4883 5.482 20.608 -43.591 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104013  
ATOM 1964c H2 TIP3W4883 4.547 21.186 -44.633 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104014  
ATOM 1964d OH2 TIP3W4884 -15.186 -43.583 -37.475 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104015  
ATOM 1964e H1 TIP3W4884 -14.349 -44.015 -37.308 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19650  
Duplicate atom serial number found: 19651  
Duplicate atom serial number found: 19652  
Duplicate atom serial number found: 19653  
Duplicate atom serial number found: 19654  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104027  
ATOM 1965a H1 TIP3W4889 -23.056 59.086 26.308 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104028  
ATOM 1965b H2 TIP3W4889 -22.966 58.128 25.139 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104029  
ATOM 1965c OH2 TIP3W4890 22.387 3.906 -53.254 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104030  
ATOM 1965d H1 TIP3W4890 22.081 3.063 -52.919 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104031  
ATOM 1965e H2 TIP3W4890 23.192 4.080 -52.766 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19660  
Duplicate atom serial number found: 19661  
Duplicate atom serial number found: 19662  
Duplicate atom serial number found: 19663  
Duplicate atom serial number found: 19664  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104043  
ATOM 1966a H2 TIP3W4896 -19.867 -31.075 -1.703 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104044  
ATOM 1966b OH2 TIP3W4897 49.927 -6.159 -46.248 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104045  
ATOM 1966c H1 TIP3W4897 50.354 -6.692 -46.918 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104046  
ATOM 1966d H2 TIP3W4897 49.063 -5.964 -46.611 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104047  
ATOM 1966e OH2 TIP3W4898 -52.433 -35.931 25.359 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19670  
Duplicate atom serial number found: 19671  
Duplicate atom serial number found: 19672  
Duplicate atom serial number found: 19673  
Duplicate atom serial number found: 19674  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104059  
ATOM 1967a OH2 TIP3W4902 -41.964 -22.961 -18.073 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104060  
ATOM 1967b H1 TIP3W4902 -41.922 -23.305 -17.181 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104061  
ATOM 1967c H2 TIP3W4902 -42.689 -22.336 -18.055 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104062  
ATOM 1967d OH2 TIP3W4903 20.802 57.584 -7.634 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104063  
ATOM 1967e H1 TIP3W4903 20.801 58.118 -6.840 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19680  
Duplicate atom serial number found: 19681  
Duplicate atom serial number found: 19682  
Duplicate atom serial number found: 19683  
Duplicate atom serial number found: 19684  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104075  
ATOM 1968a H1 TIP3W4907 54.068 28.778 -51.738 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104076  
ATOM 1968b H2 TIP3W4907 53.068 29.120 -50.654 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104077  
ATOM 1968c OH2 TIP3W4908 53.196 -41.650 -40.201 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104078  
ATOM 1968d H1 TIP3W4908 52.628 -42.287 -40.634 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104079  
ATOM 1968e H2 TIP3W4908 52.656 -41.282 -39.503 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19690  
Duplicate atom serial number found: 19691  
Duplicate atom serial number found: 19692  
Duplicate atom serial number found: 19693  
Duplicate atom serial number found: 19694  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104091  
ATOM 1969a H2 TIP3W4912 -44.771 58.323 -22.837 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104092  
ATOM 1969b OH2 TIP3W4913 5.181 24.886 -5.149 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104093  
ATOM 1969c H1 TIP3W4913 4.295 25.028 -5.482 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104094  
ATOM 1969d H2 TIP3W4913 5.318 23.942 -5.228 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104095  
ATOM 1969e OH2 TIP3W4914 -2.111 22.913 53.536 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19700  
Duplicate atom serial number found: 19701  
Duplicate atom serial number found: 19702  
Duplicate atom serial number found: 19703  
Duplicate atom serial number found: 19704  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104203  
ATOM 1970a OH2 TIP3W4954 15.212 15.776 -5.671 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104204  
ATOM 1970b H1 TIP3W4954 14.713 15.485 -4.907 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104205  
ATOM 1970c H2 TIP3W4954 14.796 15.336 -6.412 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104206  
ATOM 1970d OH2 TIP3W4956 -9.247 44.275 -25.778 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104207  
ATOM 1970e H1 TIP3W4956 -8.530 44.380 -25.153 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19710  
Duplicate atom serial number found: 19711  
Duplicate atom serial number found: 19712  
Duplicate atom serial number found: 19713  
Duplicate atom serial number found: 19714  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104219  
ATOM 1971a H1 TIP3W4961 -17.580 29.005 -22.693 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104220  
ATOM 1971b H2 TIP3W4961 -18.707 29.975 -22.978 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104221  
ATOM 1971c OH2 TIP3W4962 50.930 -10.144 50.504 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104222  
ATOM 1971d H1 TIP3W4962 50.440 -10.824 50.042 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104223  
ATOM 1971e H2 TIP3W4962 50.809 -10.348 51.431 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19720  
Duplicate atom serial number found: 19721  
Duplicate atom serial number found: 19722  
Duplicate atom serial number found: 19723  
Duplicate atom serial number found: 19724  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104235  
ATOM 1972a H2 TIP3W4966 2.182 40.741 -46.998 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104236  
ATOM 1972b OH2 TIP3W4967 -23.316 -37.760 52.514 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104237  
ATOM 1972c H1 TIP3W4967 -23.824 -37.052 52.119 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104238  
ATOM 1972d H2 TIP3W4967 -23.337 -38.462 51.864 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104239  
ATOM 1972e OH2 TIP3W4968 34.450 -36.683 -8.967 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19730  
Duplicate atom serial number found: 19731  
Duplicate atom serial number found: 19732  
Duplicate atom serial number found: 19733  
Duplicate atom serial number found: 19734  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104251  
ATOM 1973a OH2 TIP3W4974 39.789 21.939 -23.544 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104252  
ATOM 1973b H1 TIP3W4974 40.439 22.599 -23.784 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104253  
ATOM 1973c H2 TIP3W4974 40.251 21.105 -23.625 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104254  
ATOM 1973d OH2 TIP3W4975 2.533 25.749 -53.978 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104255  
ATOM 1973e H1 TIP3W4975 2.773 26.031 -53.095 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19740  
Duplicate atom serial number found: 19741  
Duplicate atom serial number found: 19742  
Duplicate atom serial number found: 19743  
Duplicate atom serial number found: 19744  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104267  
ATOM 1974a H1 TIP3W4979 16.777 -19.583 -27.008 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104268  
ATOM 1974b H2 TIP3W4979 16.089 -18.523 -27.841 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104269  
ATOM 1974c OH2 TIP3W4980 -27.536 51.490 39.647 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104270  
ATOM 1974d H1 TIP3W4980 -28.412 51.858 39.538 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104271  
ATOM 1974e H2 TIP3W4980 -27.145 52.006 40.353 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19750  
Duplicate atom serial number found: 19751  
Duplicate atom serial number found: 19752  
Duplicate atom serial number found: 19753  
Duplicate atom serial number found: 19754  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104283  
ATOM 1975a H2 TIP3W4985 -25.137 -17.716 -53.633 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104284  
ATOM 1975b OH2 TIP3W4986 1.641 -45.337 34.355 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104285  
ATOM 1975c H1 TIP3W4986 2.246 -45.358 33.613 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104286  
ATOM 1975d H2 TIP3W4986 0.772 -45.388 33.957 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104287  
ATOM 1975e OH2 TIP3W4987 28.994 39.146 32.379 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19760  
Duplicate atom serial number found: 19761  
Duplicate atom serial number found: 19762  
Duplicate atom serial number found: 19763  
Duplicate atom serial number found: 19764  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104299  
ATOM 1976a OH2 TIP3W4991 -33.569 -50.086 -2.159 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104300  
ATOM 1976b H1 TIP3W4991 -32.787 -50.565 -2.434 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104301  
ATOM 1976c H2 TIP3W4991 -34.033 -50.696 -1.585 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104302  
ATOM 1976d OH2 TIP3W4992 34.700 -19.482 16.527 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104303  
ATOM 1976e H1 TIP3W4992 35.573 -19.657 16.879 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19770  
Duplicate atom serial number found: 19771  
Duplicate atom serial number found: 19772  
Duplicate atom serial number found: 19773  
Duplicate atom serial number found: 19774  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104315  
ATOM 1977a H1 TIP3W4996 49.411 -3.042 -37.011 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104316  
ATOM 1977b H2 TIP3W4996 50.339 -3.406 -38.151 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104317  
ATOM 1977c OH2 TIP3W4997 -60.165 -18.028 -5.625 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104318  
ATOM 1977d H1 TIP3W4997 -60.621 -18.245 -6.438 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104319  
ATOM 1977e H2 TIP3W4997 -60.730 -17.382 -5.199 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19780  
Duplicate atom serial number found: 19781  
Duplicate atom serial number found: 19782  
Duplicate atom serial number found: 19783  
Duplicate atom serial number found: 19784  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104331  
ATOM 1978a H2 TIP3W5002 -52.436 8.163 -47.719 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104332  
ATOM 1978b OH2 TIP3W5003 6.009 -52.663 10.103 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104333  
ATOM 1978c H1 TIP3W5003 6.629 -52.628 10.831 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104334  
ATOM 1978d H2 TIP3W5003 5.583 -53.516 10.191 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104335  
ATOM 1978e OH2 TIP3W5004 43.798 1.560 32.071 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19790  
Duplicate atom serial number found: 19791  
Duplicate atom serial number found: 19792  
Duplicate atom serial number found: 19793  
Duplicate atom serial number found: 19794  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104347  
ATOM 1979a OH2 TIP3W5008 -10.824 -3.571 -41.215 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104348  
ATOM 1979b H1 TIP3W5008 -11.777 -3.641 -41.157 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104349  
ATOM 1979c H2 TIP3W5008 -10.499 -4.136 -40.515 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104350  
ATOM 1979d OH2 TIP3W5009 29.840 31.492 58.223 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104351  
ATOM 1979e H1 TIP3W5009 30.386 32.041 58.785 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19800  
Duplicate atom serial number found: 19801  
Duplicate atom serial number found: 19802  
Duplicate atom serial number found: 19803  
Duplicate atom serial number found: 19804  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104459  
ATOM 1980a H1 TIP3W5048 0.585 42.771 34.896 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104460  
ATOM 1980b H2 TIP3W5048 0.807 43.573 33.631 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104461  
ATOM 1980c OH2 TIP3W5049 7.038 -23.466 -2.235 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104462  
ATOM 1980d H1 TIP3W5049 7.149 -23.815 -1.351 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104463  
ATOM 1980e H2 TIP3W5049 7.861 -23.011 -2.418 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19810  
Duplicate atom serial number found: 19811  
Duplicate atom serial number found: 19812  
Duplicate atom serial number found: 19813  
Duplicate atom serial number found: 19814  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104475  
ATOM 1981a H2 TIP3W5054 -40.861 -7.442 -13.661 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104476  
ATOM 1981b OH2 TIP3W5055 38.423 38.978 14.585 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104477  
ATOM 1981c H1 TIP3W5055 38.307 39.074 15.530 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104478  
ATOM 1981d H2 TIP3W5055 37.562 39.176 14.216 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104479  
ATOM 1981e OH2 TIP3W5056 8.899 48.404 -21.350 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19820  
Duplicate atom serial number found: 19821  
Duplicate atom serial number found: 19822  
Duplicate atom serial number found: 19823  
Duplicate atom serial number found: 19824  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104491  
ATOM 1982a OH2 TIP3W5060 54.354 -24.608 43.338 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104492  
ATOM 1982b H1 TIP3W5060 54.287 -25.514 43.639 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104493  
ATOM 1982c H2 TIP3W5060 53.448 -24.334 43.197 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104494  
ATOM 1982d OH2 TIP3W5061 -27.226 7.375 -23.958 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104495  
ATOM 1982e H1 TIP3W5061 -26.434 6.883 -23.741 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19830  
Duplicate atom serial number found: 19831  
Duplicate atom serial number found: 19832  
Duplicate atom serial number found: 19833  
Duplicate atom serial number found: 19834  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104507  
ATOM 1983a H1 TIP3W5065 -12.487 11.332 -11.017 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104508  
ATOM 1983b H2 TIP3W5065 -11.621 11.453 -12.252 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104509  
ATOM 1983c OH2 TIP3W5066 -9.562 4.097 -32.915 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104510  
ATOM 1983d H1 TIP3W5066 -8.898 4.343 -33.559 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104511  
ATOM 1983e H2 TIP3W5066 -10.395 4.318 -33.332 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19840  
Duplicate atom serial number found: 19841  
Duplicate atom serial number found: 19842  
Duplicate atom serial number found: 19843  
Duplicate atom serial number found: 19844  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104523  
ATOM 1984a H2 TIP3W5070 19.174 32.755 -36.644 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104524  
ATOM 1984b OH2 TIP3W5071 35.810 3.401 -0.293 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104525  
ATOM 1984c H1 TIP3W5071 34.935 3.512 0.078 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104526  
ATOM 1984d H2 TIP3W5071 35.805 3.939 -1.084 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104527  
ATOM 1984e OH2 TIP3W5072 -1.390 42.075 27.010 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19850  
Duplicate atom serial number found: 19851  
Duplicate atom serial number found: 19852  
Duplicate atom serial number found: 19853  
Duplicate atom serial number found: 19854  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104539  
ATOM 1985a OH2 TIP3W5078 -19.866 -2.949 -58.045 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104540  
ATOM 1985b H1 TIP3W5078 -20.485 -3.252 -58.709 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104541  
ATOM 1985c H2 TIP3W5078 -19.784 -2.008 -58.205 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104542  
ATOM 1985d OH2 TIP3W5079 -15.407 -30.155 -54.483 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104543  
ATOM 1985e H1 TIP3W5079 -14.751 -29.698 -53.957 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19860  
Duplicate atom serial number found: 19861  
Duplicate atom serial number found: 19862  
Duplicate atom serial number found: 19863  
Duplicate atom serial number found: 19864  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104555  
ATOM 1986a H1 TIP3W5083 -28.859 53.772 -37.644 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104556  
ATOM 1986b H2 TIP3W5083 -28.620 55.266 -37.585 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104557  
ATOM 1986c OH2 TIP3W5084 49.242 45.970 -18.706 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104558  
ATOM 1986d H1 TIP3W5084 50.157 45.786 -18.917 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104559  
ATOM 1986e H2 TIP3W5084 49.133 45.645 -17.812 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19870  
Duplicate atom serial number found: 19871  
Duplicate atom serial number found: 19872  
Duplicate atom serial number found: 19873  
Duplicate atom serial number found: 19874  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104571  
ATOM 1987a H2 TIP3W5088 -37.635 52.378 56.663 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104572  
ATOM 1987b OH2 TIP3W5089 11.017 -24.505 -53.592 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104573  
ATOM 1987c H1 TIP3W5089 11.324 -23.890 -54.259 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104574  
ATOM 1987d H2 TIP3W5089 10.284 -24.056 -53.171 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104575  
ATOM 1987e OH2 TIP3W5090 -1.668 -24.996 -25.838 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19880  
Duplicate atom serial number found: 19881  
Duplicate atom serial number found: 19882  
Duplicate atom serial number found: 19883  
Duplicate atom serial number found: 19884  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104587  
ATOM 1988a OH2 TIP3W5094 -40.465 -17.326 22.003 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104588  
ATOM 1988b H1 TIP3W5094 -40.764 -17.197 21.103 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104589  
ATOM 1988c H2 TIP3W5094 -39.513 -17.229 21.956 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104590  
ATOM 1988d OH2 TIP3W5095 43.175 13.326 51.343 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104591  
ATOM 1988e H1 TIP3W5095 43.018 13.918 50.607 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19890  
Duplicate atom serial number found: 19891  
Duplicate atom serial number found: 19892  
Duplicate atom serial number found: 19893  
Duplicate atom serial number found: 19894  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104603  
ATOM 1989a H1 TIP3W5099 44.489 5.058 2.752 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104604  
ATOM 1989b H2 TIP3W5099 43.853 6.173 3.553 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104605  
ATOM 1989c OH2 TIP3W5100 32.267 47.381 11.634 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104606  
ATOM 1989d H1 TIP3W5100 32.204 47.932 12.414 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104607  
ATOM 1989e H2 TIP3W5100 31.588 47.716 11.048 0.00 0.00 WT5  
  
97 messages similar to the above omitted  
Duplicate atom serial number found: 19900  
Duplicate atom serial number found: 19901  
Duplicate atom serial number found: 19902  
Duplicate atom serial number found: 19903  
Duplicate atom serial number found: 19904  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104715  
ATOM 1990a H2 TIP3W5140 -46.414 9.932 -7.421 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104716  
ATOM 1990b OH2 TIP3W5141 -54.914 39.371 11.457 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104717  
ATOM 1990c H1 TIP3W5141 -55.809 39.662 11.282 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104718  
ATOM 1990d H2 TIP3W5141 -55.010 38.684 12.116 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104719  
ATOM 1990e OH2 TIP3W5142 23.634 -23.765 -21.852 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19910  
Duplicate atom serial number found: 19911  
Duplicate atom serial number found: 19912  
Duplicate atom serial number found: 19913  
Duplicate atom serial number found: 19914  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104731  
ATOM 1991a OH2 TIP3W5146 -51.878 24.815 -43.637 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104732  
ATOM 1991b H1 TIP3W5146 -51.758 25.192 -44.508 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104733  
ATOM 1991c H2 TIP3W5146 -51.017 24.467 -43.404 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104734  
ATOM 1991d OH2 TIP3W5147 31.526 26.604 -39.347 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104735  
ATOM 1991e H1 TIP3W5147 31.488 26.676 -40.300 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19920  
Duplicate atom serial number found: 19921  
Duplicate atom serial number found: 19922  
Duplicate atom serial number found: 19923  
Duplicate atom serial number found: 19924  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104747  
ATOM 1992a H1 TIP3W5151 -45.368 -25.419 44.472 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104748  
ATOM 1992b H2 TIP3W5151 -45.981 -24.790 45.705 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104749  
ATOM 1992c OH2 TIP3W5152 -11.214 50.450 -40.223 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104750  
ATOM 1992d H1 TIP3W5152 -11.416 49.943 -39.437 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104751  
ATOM 1992e H2 TIP3W5152 -12.009 50.954 -40.395 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19930  
Duplicate atom serial number found: 19931  
Duplicate atom serial number found: 19932  
Duplicate atom serial number found: 19933  
Duplicate atom serial number found: 19934  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104763  
ATOM 1993a H2 TIP3W5156 36.564 -17.843 -45.286 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104764  
ATOM 1993b OH2 TIP3W5157 -16.408 -49.880 22.726 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104765  
ATOM 1993c H1 TIP3W5157 -16.832 -49.811 21.870 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104766  
ATOM 1993d H2 TIP3W5157 -15.593 -50.350 22.553 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104767  
ATOM 1993e OH2 TIP3W5158 -57.369 -23.030 26.856 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19940  
Duplicate atom serial number found: 19941  
Duplicate atom serial number found: 19942  
Duplicate atom serial number found: 19943  
Duplicate atom serial number found: 19944  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104779  
ATOM 1994a OH2 TIP3W5162 2.327 21.515 27.630 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104780  
ATOM 1994b H1 TIP3W5162 2.739 22.379 27.603 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104781  
ATOM 1994c H2 TIP3W5162 3.060 20.900 27.659 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104782  
ATOM 1994d OH2 TIP3W5163 57.521 17.623 26.743 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104783  
ATOM 1994e H1 TIP3W5163 56.706 17.257 26.400 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19950  
Duplicate atom serial number found: 19951  
Duplicate atom serial number found: 19952  
Duplicate atom serial number found: 19953  
Duplicate atom serial number found: 19954  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104795  
ATOM 1995a H1 TIP3W5167 -19.412 20.516 17.794 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104796  
ATOM 1995b H2 TIP3W5167 -20.281 20.745 19.012 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104797  
ATOM 1995c OH2 TIP3W5168 -42.617 32.654 -56.363 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104798  
ATOM 1995d H1 TIP3W5168 -42.025 33.118 -56.955 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104799  
ATOM 1995e H2 TIP3W5168 -42.131 31.871 -56.103 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19960  
Duplicate atom serial number found: 19961  
Duplicate atom serial number found: 19962  
Duplicate atom serial number found: 19963  
Duplicate atom serial number found: 19964  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104811  
ATOM 1996a H2 TIP3W5172 -46.990 8.210 44.454 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104812  
ATOM 1996b OH2 TIP3W5173 32.700 -44.408 6.337 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104813  
ATOM 1996c H1 TIP3W5173 31.820 -44.141 6.071 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104814  
ATOM 1996d H2 TIP3W5173 32.717 -45.354 6.193 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104815  
ATOM 1996e OH2 TIP3W5174 1.256 36.316 -22.226 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19970  
Duplicate atom serial number found: 19971  
Duplicate atom serial number found: 19972  
Duplicate atom serial number found: 19973  
Duplicate atom serial number found: 19974  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104827  
ATOM 1997a OH2 TIP3W5178 -58.667 4.861 -35.566 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104828  
ATOM 1997b H1 TIP3W5178 -58.833 5.054 -34.643 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104829  
ATOM 1997c H2 TIP3W5178 -59.105 5.566 -36.041 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104830  
ATOM 1997d OH2 TIP3W5179 3.525 27.772 -27.192 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104831  
ATOM 1997e H1 TIP3W5179 4.013 27.839 -26.371 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19980  
Duplicate atom serial number found: 19981  
Duplicate atom serial number found: 19982  
Duplicate atom serial number found: 19983  
Duplicate atom serial number found: 19984  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104843  
ATOM 1998a H1 TIP3W5183 33.638 -15.792 19.836 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104844  
ATOM 1998b H2 TIP3W5183 35.118 -15.721 20.151 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104845  
ATOM 1998c OH2 TIP3W5184 -51.002 -34.060 10.742 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104846  
ATOM 1998d H1 TIP3W5184 -51.640 -34.772 10.689 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104847  
ATOM 1998e H2 TIP3W5184 -50.276 -34.425 11.247 0.00 0.00 WT5  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 19990  
Duplicate atom serial number found: 19991  
Duplicate atom serial number found: 19992  
Duplicate atom serial number found: 19993  
Duplicate atom serial number found: 19994  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 104859  
ATOM 1999a H2 TIP3W5188 42.865 17.130 25.636 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104860  
ATOM 1999b OH2 TIP3W5189 13.265 10.005 15.791 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104861  
ATOM 1999c H1 TIP3W5189 12.861 9.283 16.272 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104862  
ATOM 1999d H2 TIP3W5189 13.997 10.281 16.344 0.00 0.00 WT5  
  
Ignored bad PDB record found on line 104863  
ATOM 1999e OH2 TIP3W5190 6.826 -7.814 -44.330 0.00 0.00 WT5  
  
26209 messages similar to the above omitted  
Duplicate atom serial number found: 20000  
Duplicate atom serial number found: 20001  
Duplicate atom serial number found: 20002  
Duplicate atom serial number found: 20003  
Duplicate atom serial number found: 20004  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 131083  
ATOM 2000a OH2 TIP3W7987 12.666 -2.767 -16.060 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131084  
ATOM 2000b H1 TIP3W7987 13.147 -1.949 -15.936 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131085  
ATOM 2000c H2 TIP3W7987 11.909 -2.523 -16.593 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131086  
ATOM 2000d OH2 TIP3W7988 60.969 27.993 52.425 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131087  
ATOM 2000e H1 TIP3W7988 60.410 27.400 51.923 0.00 0.00 WT6  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 20010  
Duplicate atom serial number found: 20011  
Duplicate atom serial number found: 20012  
Duplicate atom serial number found: 20013  
Duplicate atom serial number found: 20014  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 131099  
ATOM 2001a H1 TIP3W7992 0.557 32.055 -8.249 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131100  
ATOM 2001b H2 TIP3W7992 0.471 32.328 -9.735 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131101  
ATOM 2001c OH2 TIP3W7994 -38.677 -11.963 22.348 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131102  
ATOM 2001d H1 TIP3W7994 -37.980 -11.316 22.456 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131103  
ATOM 2001e H2 TIP3W7994 -38.496 -12.372 21.502 0.00 0.00 WT6  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 20020  
Duplicate atom serial number found: 20021  
Duplicate atom serial number found: 20022  
Duplicate atom serial number found: 20023  
Duplicate atom serial number found: 20024  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 131115  
ATOM 2002a H2 TIP3W8007 -29.524 36.676 3.614 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131116  
ATOM 2002b OH2 TIP3W8010 -36.111 -41.031 -48.994 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131117  
ATOM 2002c H1 TIP3W8010 -36.607 -41.744 -49.397 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131118  
ATOM 2002d H2 TIP3W8010 -35.211 -41.170 -49.287 0.00 0.00 WT6  
  
Ignored bad PDB record found on line 131119  
ATOM 2002e OH2 TIP3W8011 55.587 -44.534 -26.036 0.00 0.00 WT6  
  
[deleted to fit within ticket limits]
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 29390  
Duplicate atom serial number found: 29391  
Duplicate atom serial number found: 29392  
Duplicate atom serial number found: 29393  
Duplicate atom serial number found: 29394  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 168859  
ATOM 2939a CLA CLA I 136 -8.632 -24.040 -54.168 0.00 0.00 ION  
  
Ignored bad PDB record found on line 168860  
ATOM 2939b CLA CLA I 137 -83.557 48.270 6.970 0.00 0.00 ION  
  
Ignored bad PDB record found on line 168861  
ATOM 2939c CLA CLA I 138 14.103 -20.877 23.225 0.00 0.00 ION  
  
Ignored bad PDB record found on line 168862  
ATOM 2939d CLA CLA I 139 -29.141 -0.754 45.108 0.00 0.00 ION  
  
Ignored bad PDB record found on line 168863  
ATOM 2939e CLA CLA I 140 -6.755 12.887 20.197 0.00 0.00 ION  
  
16 messages similar to the above omitted  
  
Chain information for mitoneet-eq.pdb #2  
---  
Chain | Description  
P | No description available  
  

> volume #1 level -0.0002 level 0

> volume #1 level -0.0002 level 7.899e-06

> close #1

> open /Volumes/T7/mitoneet/density.dx

Opened density.dx as #1, grid size 99,82,37, pixel 1, shown at level
-0.000202,0.000202, step 1, values float32  

> open /Volumes/T7/mitoneet/density.dx

Opened density.dx as #3, grid size 99,82,37, pixel 1, shown at level
-0.000202,0.000202, step 1, values float32  

> select add #1

3 models selected  

> select subtract #1

Nothing selected  

> hide #!1 models

> hide #!3 models

> show #!3 models

> close #1

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2165, in mousePressEvent  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 366, in select_marker_cb  
cb(self.markers[i])  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2234, in selected_marker_cb  
self.select_data_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2167, in mouseMoveEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  

> volume #3 level -0.000202 level 0.0003161

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in read_float_lines  
values = [float(x) for x in fields]  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 170, in <listcomp>  
values = [float(x) for x in fields]  
^^^^^^^^  
ValueError: could not convert string to float: b'attribute'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2174, in mouseReleaseEvent  
self._drag(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2171, in _drag  
cb(event)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb  
cb(m)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2242, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2228, in select_data_cb  
d.redisplay_needed_cb()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 305, in redisplay_needed_cb  
self.redisplay_needed()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 331, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 373, in
show_using_dialog_settings  
dr.show()  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 773, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1769, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1252, in matrix  
m = self.region_matrix(r, read_matrix)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 1276, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/griddata.py", line 317, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/apbs/apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 132, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
SyntaxError: Bad number format in /Volumes/T7/mitoneet/density.dx, line  
b'attribute "dep" string "positions"\n'  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/readarray.py", line 173, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Model Number: MKGP3Y/A
      Chip: Apple M1 Pro
      Total Number of Cores: 8 (6 performance and 2 efficiency)
      Memory: 16 GB
      System Firmware Version: 10151.101.3
      OS Loader Version: 10151.101.3

Software:

    System Software Overview:

      System Version: macOS 14.4.1 (23E224)
      Kernel Version: Darwin 23.4.0
      Time since boot: 13 dies, 6 hores i 32 minuts

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 14
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

Change History (2)

comment:1 by Eric Pettersen, 19 months ago

Component: Unassigned → Volume Data
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Problem reading .dx map: could not convert string to float: b'attribute'

comment:2 by Tom Goddard, 19 months ago

Resolution: → can't reproduce
Status: assigned → closed

ChimeraX only handles 3d maps in OpenDX format (.dx). The file the user opened had other kinds of data in it giving an error trying to parse it.

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