Opened 19 months ago

Closed 19 months ago

#15016 closed defect (can't reproduce)

glDrawBuffer: invalid operation

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.14.0-162.23.1.el9_1.x86_64-x86_64-with-glibc2.34
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 7cpu

Summary of feedback from opening 7cpu fetched from pdb  
---  
note | Fetching compressed mmCIF 7cpu from
http://files.rcsb.org/download/7cpu.cif  
  
7cpu title:  
Cryo-EM structure of 80S ribosome from mouse kidney [more info...]  
  
Chain information for 7cpu #1  
---  
Chain | Description | UniProt  
L5 | Mus musculus 28S ribosomal RNA |  
L7 | Mus musculus 5S ribosomal RNA |  
L8 | Mus musculus 5.8S ribosomal RNA |  
LA | 60S ribosomal protein L8 | RL8_MOUSE 1-257  
LB | 60S ribosomal protein L3 | RL3_MOUSE 1-403  
LC | 60S ribosomal protein L4 | RL4_MOUSE 1-419  
LD | 60S ribosomal protein L5 | RL5_MOUSE 1-297  
LE | 60S ribosomal protein L6 | RL6_MOUSE 1-296  
LF | 60S ribosomal protein L7 | RL7_MOUSE 1-270  
LG | 60S ribosomal protein L7a | RL7A_MOUSE 1-266  
LH | 60S ribosomal protein L9 | RL9_MOUSE 1-192  
LI | 60S ribosomal protein L10 | RL10_MOUSE 1-214  
LJ | 60S ribosomal protein L11 | RL11_MOUSE 1-178  
LL | 60S ribosomal protein L13 | RL13_MOUSE 1-211  
LM | 60S ribosomal protein L14 | RL14_MOUSE 1-217  
LN | 60S ribosomal protein L15 | RL15_MOUSE 1-204  
LO | 60S ribosomal protein L13a | RL13A_MOUSE 1-203  
LP | 60S ribosomal protein L17 | Q6ZWZ7_MOUSE 1-184  
LQ | 60S ribosomal protein L18 | RL18_MOUSE 1-188  
LR | 60S ribosomal protein L19 | RL19_MOUSE 1-196  
LS | 60S ribosomal protein L18a | RL18A_MOUSE 1-176  
LT | 60S ribosomal protein L21 | Q9CQM8_MOUSE 1-160  
LU | 60S ribosomal protein L22 | RL22_MOUSE 1-128  
LV | 60S ribosomal protein L23 | RL23_MOUSE 1-140  
LW | 60S ribosomal protein L24 | RL24_MOUSE 1-157  
LX | 60S ribosomal protein L23a | RL23A_MOUSE 1-156  
LY | 60S ribosomal protein L26 | RL26_MOUSE 1-145  
LZ | 60S ribosomal protein L27 | RL27_MOUSE 1-136  
La | 60S ribosomal protein L27a | RL27A_MOUSE 1-148  
Lb | 60S ribosomal protein L29 | RL29_MOUSE 1-160  
Lc | 60S ribosomal protein L30 | RL30_MOUSE 1-115  
Ld | 60S ribosomal protein L31 | RL31_MOUSE 1-125  
Le | 60S ribosomal protein L32 | RL32_MOUSE 1-135  
Lf | 60S ribosomal protein L35a | RL35A_MOUSE 1-110  
Lg | 60S ribosomal protein L34 | RL34_MOUSE 1-117  
Lh | 60S ribosomal protein L35 | RL35_MOUSE 1-123  
Li | 60S ribosomal protein L36 | Q6ZWZ4_MOUSE 1-105  
Lj | 60S ribosomal protein L37 | RL37_MOUSE 1-97  
Lk | 60S ribosomal protein L38 | RL38_MOUSE 1-70  
Ll | Ribosomal protein L39 | Q505A8_MOUSE 1-51  
Lm | Ubiquitin-60S ribosomal protein L40 | RL40_MOUSE 1-128  
Ln | 60S ribosomal protein L41 | RL41_MOUSE 1-25  
Lo | 60S ribosomal protein L36a | RL36A_MOUSE 1-106  
Lp | 60S ribosomal protein L37a | RL37A_MOUSE 1-92  
Lr | 60S ribosomal protein L28 | RL28_MOUSE 1-137  
S2 | Mus musculus 18S ribosomal RNA |  
S6 | tRNA |  
SA | 40S ribosomal protein SA | RSSA_MOUSE 1-295  
SB | 40S ribosomal protein S3a | RS3A_MOUSE 1-264  
SC | 40S ribosomal protein S2 | RS2_MOUSE 1-293  
SD | 40S ribosomal protein S3 | RS3_MOUSE 1-243  
SE | 40S ribosomal protein S4, X isoform | RS4X_MOUSE 1-263  
SF | 40S ribosomal protein S5 | Q91V55_MOUSE 1-204  
SG | 40S ribosomal protein S6 | RS6_MOUSE 1-249  
SH | 40S ribosomal protein S7 | RS7_MOUSE 1-194  
SI | 40S ribosomal protein S8 | RS8_MOUSE 1-208  
SJ | 40S ribosomal protein S9 | RS9_MOUSE 1-194  
SK | 40S ribosomal protein S10 | RS10_MOUSE 1-165  
SL | 40S ribosomal protein S11 | RS11_MOUSE 1-158  
SN | 40S ribosomal protein S13 | RS13_MOUSE 1-151  
SO | 40S ribosomal protein S14 | RS14_MOUSE 1-151  
SP | 40S ribosomal protein S15 | RS15_MOUSE 1-145  
SQ | 40S ribosomal protein S16 | RS16_MOUSE 1-146  
SR | 40S ribosomal protein S17 | RS17_MOUSE 1-135  
SS | 40S ribosomal protein S18 | RS18_MOUSE 1-152  
ST | 40S ribosomal protein S19 | RS19_MOUSE 1-145  
SU | 40S ribosomal protein S20 | RS20_MOUSE 1-119  
SV | 40S ribosomal protein S21 | RS21_MOUSE 1-83  
SW | 40S ribosomal protein S15a | RS15A_MOUSE 1-130  
SX | 40S ribosomal protein S23 | RS23_MOUSE 1-143  
SY | 40S ribosomal protein S24 | RS24_MOUSE 1-133  
SZ | 40S ribosomal protein S25 | RS25_MOUSE 1-125  
Sa | 40S ribosomal protein S26 | RS26_MOUSE 1-115  
Sb | 40S ribosomal protein S27 | RS27_MOUSE 1-84  
Sc | 40S ribosomal protein S28 | RS28_MOUSE 1-69  
Sd | 40S ribosomal protein S29 | RS29_MOUSE 1-56  
Se | 40S ribosomal protein S30 | Q642K5_MOUSE 1-133  
Sg | Receptor of activated protein C kinase 1 | RACK1_MOUSE 1-317  
  
Non-standard residues in 7cpu #1  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> open 4v88

Summary of feedback from opening 4v88 fetched from pdb  
---  
warnings | Ignoring microheterogeneity for label_seq_id 3 in chain  
Ignoring microheterogeneity for label_seq_id 4 in chain BO  
Ignoring microheterogeneity for label_seq_id 11 in chain BO  
Ignoring microheterogeneity for label_seq_id 13 in chain BO  
Ignoring microheterogeneity for label_seq_id 16 in chain BO  
35 messages similar to the above omitted  
Atom OP1 has no neighbors to form bonds with according to residue template for
G /A5:420  
Atom OP2 has no neighbors to form bonds with according to residue template for
G /A5:420  
  
4v88 title:  
The structure of the eukaryotic ribosome at 3.0 A resolution. [more info...]  
  
Chain information for 4v88 #2  
---  
Chain | Description | UniProt  
A1 A5 | 25S rRNA |  
A2 | 18S RIBOSOMAL RNA |  
A3 A7 | 5S rRNA |  
A4 A8 | 5.8S rRNA |  
A6 | 18S rRNA |  
AA CA | 40S ribosomal protein S0-A | RSSA1_YEAST 1-252  
AB CB | 40S ribosomal protein S1-A | RS3A1_YEAST 1-255  
AC CC | 40S ribosomal protein S2 | RS2_YEAST 1-254  
AD CD | 40S ribosomal protein S3 | RS3_YEAST 1-240  
AE CE | 40S ribosomal protein S4-A | RS4A_YEAST 1-261  
AF CF | 40S ribosomal protein S5 | RS5_YEAST 1-225  
AG CG | 40S ribosomal protein S6-A | RS6A_YEAST 1-236  
AH CH | 40S ribosomal protein S7-A | RS7A_YEAST 1-190  
AI CI | 40S ribosomal protein S8-A | RS8A_YEAST 1-200  
AJ CJ | 40S ribosomal protein S9-A | RS9A_YEAST 1-197  
AK CK | 40S ribosomal protein S10-A | RS10A_YEAST 1-105  
AL CL | 40S ribosomal protein S11-A | RS11A_YEAST 1-156  
AM CM | 40S ribosomal protein S12 | RS12_YEAST 1-143  
AN CN | 40S ribosomal protein S13 | RS13_YEAST 1-151  
AO CO | 40S ribosomal protein S14-A | RS14A_YEAST 1-137  
AP CP | 40S ribosomal protein S15 | RS15_YEAST 1-142  
AQ CQ | 40S ribosomal protein S16-A | RS16A_YEAST 1-143  
AR CR | 40S ribosomal protein S17-A | RS17A_YEAST 1-136  
AS CS | 40S ribosomal protein S18-A | RS18A_YEAST 1-146  
AT CT | 40S ribosomal protein S19-A | RS19A_YEAST 1-144  
AU CU | 40S ribosomal protein S20 | RS20_YEAST 1-121  
AV CV | 40S ribosomal protein S21-A | RS21A_YEAST 1-87  
AW CW | 40S ribosomal protein S22-A | RS22A_YEAST 1-130  
AX CX | 40S ribosomal protein S23-A | RS23A_YEAST 1-145  
AY CY | 40S ribosomal protein S24-A | RS24A_YEAST 1-135  
AZ CZ | 40S ribosomal protein S25-A | RS25A_YEAST 1-108  
Aa Ca | 40S ribosomal protein S26-A | RS26A_YEAST 1-119  
Ab Cb | 40S ribosomal protein S27-A | RS27_YEAST 1-82  
Ac Cc | 40S ribosomal protein S28-A | RS28A_YEAST 1-67  
Ad Cd | 40S ribosomal protein S29-A | RS29A_YEAST 1-56  
Ae Ce | 40S ribosomal protein S30-A | RS30A_YEAST 1-63  
Af Cf | 40S ribosomal protein S31 | RS27A_YEAST 1-152  
Ag Cg | Guanine nucleotide-binding protein subunit beta-like protein (ASC1,
RACK1) | GBLP_YEAST 1-319  
Ah | Suppressor protein STM1 | STM1_YEAST 1-273  
BA DA | 60S ribosomal protein L2-A | RL2A_YEAST 1-254  
BB DB | 60S ribosomal protein L3 | RL3_YEAST 1-387  
BC DC | 60S ribosomal protein L4-A | RL4A_YEAST 1-362  
BD DD | 60S ribosomal protein L5 | RL5_YEAST 1-297  
BE DE | 60S ribosomal protein L6-A | RL6A_YEAST 1-176  
BF DF | 60S ribosomal protein L7-A | RL7A_YEAST 1-244  
BG DG | 60S ribosomal protein L8-A | RL8A_YEAST 1-256  
BH DH | 60S ribosomal protein L9-A | RL9A_YEAST 1-191  
BI DI | 60S ribosomal protein L10 | RL10_YEAST 1-221  
BJ DJ | 60S ribosomal protein L11-A | RL11A_YEAST 1-174  
BL DL | 60S ribosomal protein L13-A | RL13A_YEAST 1-199  
BM DM | 60S ribosomal protein L14-A | RL14A_YEAST 1-138  
BN DN | 60S ribosomal protein L15-A | RL15A_YEAST 1-204  
BO DO | 60S ribosomal protein L16-A, 60S ribosomal protein L16-B | RL16A_YEAST
1-199  
BP DP | 60S ribosomal protein L17-A | RL17A_YEAST 1-184  
BQ DQ | 60S ribosomal protein L18-A | RL18A_YEAST 1-186  
BR DR | 60S ribosomal protein L19-A | RL19A_YEAST 1-189  
BS DS | 60S ribosomal protein L20-A | RL20A_YEAST 1-172  
BT DT | 60S ribosomal protein L21-A | RL21A_YEAST 1-160  
BU DU | 60S ribosomal protein L22-A | RL22A_YEAST 1-121  
BV DV | 60S ribosomal protein L23-A | RL23A_YEAST 1-137  
BW DW | 60S ribosomal protein L24-A | RL24A_YEAST 1-155  
BX DX | 60S ribosomal protein L25 | RL25_YEAST 1-142  
BY DY | 60S ribosomal protein L26-A | RL26A_YEAST 1-127  
BZ DZ | 60S ribosomal protein L27-A | RL27A_YEAST 1-136  
Ba Da | 60S ribosomal protein L28 | RL28_YEAST 1-149  
Bb Db | 60S ribosomal protein L29 | RL29_YEAST 1-59  
Bc Dc | 60S ribosomal protein L30 | RL30_YEAST 1-105  
Bd Dd | 60S ribosomal protein L31-A | RL31A_YEAST 1-113  
Be De | 60S ribosomal protein L32 | RL32_YEAST 1-130  
Bf Df | 60S ribosomal protein L33-A | RL33A_YEAST 1-107  
Bg Dg | 60S ribosomal protein L34-A | RL34A_YEAST 1-121  
Bh Dh | 60S ribosomal protein L35-A | RL35A_YEAST 1-120  
Bi Di | 60S ribosomal protein L36-A | RL36A_YEAST 1-100  
Bj Dj | 60S ribosomal protein L37-A | RL37A_YEAST 1-88  
Bk Dk | 60S ribosomal protein L38 | RL38_YEAST 1-78  
Bl Dl | 60S ribosomal protein L39 | RL39_YEAST 1-51  
Bm Dm | 60S ribosomal protein L40 | RL401_YEAST 1-128  
Bn Dn | 60S ribosomal protein L41-A | RL41A_YEAST 1-25  
Bo Do | 60S ribosomal protein L42-A | RL44A_YEAST 1-106  
Bp Dp | 60S ribosomal protein L43-A | RL34A_YEAST 1-92, RL43A_YEAST 1-92  
Ch | Suppressor protein STM1 | RLA0_YEAST 1-273  
DK | Ribosomal protein L12 |  
Dq | 60S acidic ribosomal protein P0 | RLA0_YEAST 1-312  
Dr | Ribosomal protein P1 alpha |  
Ds | Ribosomal protein P2 beta |  
  
Non-standard residues in 4v88 #2  
---  
MG — magnesium ion  
OHX — osmium (III) hexammine (osmium(6+) hexaazanide)  
ZN — zinc ion  
  
4v88 mmCIF Assemblies  
---  
1| author_defined_assembly  
2| author_defined_assembly  
  

> hide atoms

> show cartoons

> select add #1

206272 atoms, 221566 bonds, 5508 pseudobonds, 16685 residues, 4 models
selected  

> color (#!1 & sel) cornflower blue

> hide #!1 models

> select subtract #1

Nothing selected  

> select add #2

413613 atoms, 431464 bonds, 19219 pseudobonds, 36905 residues, 4 models
selected  

> color (#!2 & sel) hot pink

> select subtract #2

Nothing selected  

> hide #!2 models

> ui tool show Matchmaker

[Repeated 1 time(s)]

> show #!1 models

> show #!2 models

> matchmaker #1/SC to #2/CC pairing ss cutoffDistance none

Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
No iteration  
  
Matchmaker 4v88, chain CC (#2) with 7cpu, chain SC (#1), sequence alignment
score = 770.1  
RMSD between 214 atom pairs is 0.935 angstroms  
  

> matchmaker #1/SC to #2/CC pairing ss cutoffDistance none

Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
No iteration  
  
Matchmaker 4v88, chain CC (#2) with 7cpu, chain SC (#1), sequence alignment
score = 770.1  
RMSD between 214 atom pairs is 0.935 angstroms  
  

> select SC

Expected an objects specifier or a keyword  

> select #1/SC

1665 atoms, 1701 bonds, 215 residues, 1 model selected  

> select ~sel

618220 atoms, 651329 bonds, 24727 pseudobonds, 53375 residues, 8 models
selected  

> hide sel cartoons

> select #1/SC#2/AC#2/CC

4943 atoms, 5031 bonds, 6 pseudobonds, 651 residues, 3 models selected  

> show sel cartoons

> select clear

> select #2/CC:176

6 atoms, 5 bonds, 1 residue, 1 model selected  

> color sel lime

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
Traceback (most recent call last):  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw  
self._draw_scene(camera, drawings)  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 215, in _draw_scene  
shadow, multishadow = self._compute_shadowmaps(opaque_drawings,
transparent_drawings, camera)  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 609, in _compute_shadowmaps  
shadow_enabled = r.shadow.use_shadow_map(camera, shadow_drawings)  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1440, in use_shadow_map  
shadow_map = self._finish_rendering_shadowmap() # Depth texture  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1470, in
_finish_rendering_shadowmap  
fb = r.pop_framebuffer()  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 722, in pop_framebuffer  
fb.activate()  
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2271, in activate  
GL.glDrawBuffer(self._draw_buffer)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  




OpenGL version: 3.3.0 NVIDIA 525.116.03
OpenGL renderer: NVIDIA GeForce RTX 3060 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=gnome
XDG_SESSION_DESKTOP=gnome
XDG_CURRENT_DESKTOP=GNOME
DISPLAY=:1
Manufacturer: Gigabyte Technology Co., Ltd.
Model: B650M GAMING X AX
OS: Rocky Linux 9.1 Blue Onyx
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 AMD Ryzen 7 7700X 8-Core Processor
Cache Size: 1024 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            61Gi        29Gi        24Gi       427Mi       8.4Gi        32Gi
	Swap:           31Gi          0B        31Gi

Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA104 [GeForce RTX 3060 Ti Lite Hash Rate] [10de:2489] (rev a1)	
	Subsystem: Gigabyte Technology Co., Ltd Device [1458:4077]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (2)

comment:1 by Eric Pettersen, 19 months ago

Component: Unassigned → Graphics
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → glDrawBuffer: invalid operation

comment:2 by Tom Goddard, 19 months ago

Resolution: → can't reproduce
Status: assigned → closed

Possible OpenGL graphics driver bug. But I suspect there is something more to it since this has been reported 10-20 times in past years and it is always on Linux I think. It could be connected to remote display.

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