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Opened 19 months ago
Closed 19 months ago
#14939 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.22631
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimWindows fatal exception: ecode 0xr8001010ea
x\oWindows fatal exception: pcode 0xe8001010e
Windows fatal exception: code 0x8001010en
_Windows fatal exception: code 0xc8001010eo
mWindows fatal exception: mcode 0xa8001010en
dWindows fatal exception: \code 0xd8001010ei
aWindows fatal exception: lcode 0xo8001010eg
.pWindows fatal exception: ycode 0x"8001010e, line
135Windows fatal exception: in code 0xs8001010e
how_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Windows fatal exception: Pcode 0xr8001010eo
graWindows fatal exception: mcode 0x 8001010eF
iWindows fatal exception: lcode 0xe8001010es
\Windows fatal exception: Ccode 0xh8001010ei
mWindows fatal exception: ecode 0xr8001010ea
XWindows fatal exception: code 0x18001010e.
3Windows fatal exception: \code 0xb8001010ei
nWindows fatal exception: \code 0xl8001010ei
bWindows fatal exception: \code 0xt8001010eh
reading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\Windows fatal exception: bcode 0xi8001010en
\liWindows fatal exception: bcode 0x\8001010er
unWindows fatal exception: pcode 0xy8001010e.
pyWindows fatal exception: "code 0x, line 8001010e197
in _Windows fatal exception: rcode 0xu8001010en
_mWindows fatal exception: ocode 0xd8001010eu
leWindows fatal exception: _code 0xa8001010es
_mWindows fatal exception: acode 0xi8001010en
Windows fatal exception: code 0x8001010e
Windows fatal exception: Thread 0xcode 0x000052f88001010e (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\Windows fatal exception: ocode 0xp8001010ee
n_cWindows fatal exception: omcode 0xm8001010ea
ndWindows fatal exception: \code 0xd8001010ei
aloWindows fatal exception: gcode 0x.8001010ep
y"Windows fatal exception: , line code 0x1078001010e in
Windows fatal exception: File code 0x"8001010eC
:Windows fatal exception: \Pcode 0xr8001010eo
gram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\PrograWindows fatal exception: code 0xmWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010eWindows fatal exception:
Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010e
8001010eWindows fatal exception:
code 0x 8001010eWindows fatal exception: F
icode 0xcode 0xl8001010e8001010e
Windows fatal exception:
code 0xWindows fatal exception: Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
eWindows fatal exception: code 0xscode 0x8001010e8001010e\Windows fatal exception:
code 0xC
h8001010eWindows fatal exception: 8001010ecode 0xWindows fatal exception: 8001010e
icode 0xWindows fatal exception: m8001010ee
Windows fatal exception: code 0xWindows fatal exception: code 0xr8001010e8001010ea
code 0xWindows fatal exception: 8001010ecode 0xXWindows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010e
1Windows fatal exception: code 0x8001010e.
3\Windows fatal exception: bWindows fatal exception: icode 0xn8001010e8001010e\
lcode 0xWindows fatal exception: i
b8001010e\
tWindows fatal exception: hcode 0xrWindows fatal exception: eWindows fatal exception: acode 0xdcode 0xi8001010en8001010e8001010eg
code 0x.Windows fatal exception: pcode 0xy8001010e
"
8001010eWindows fatal exception: , line code 0xWindows fatal exception: 8001010e574
code 0x in 8001010e
w
aWindows fatal exception: iWindows fatal exception: tcode 0x
File 8001010e"
CWindows fatal exception: code 0x:8001010ecode 0x
8001010e
\Windows fatal exception: Pcode 0xr8001010eo
gram Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\Windows fatal exception: lcode 0xi8001010eb
\ruWindows fatal exception: ncode 0xp8001010ey
.Windows fatal exception: pcode 0xy8001010e"
, line 87Windows fatal exception: in code 0x_8001010er
uWindows fatal exception: ncode 0x_8001010ec
oWindows fatal exception: dcode 0xe8001010e
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010egr
amWindows fatal exception: code 0xF8001010ei
les\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.pWindows fatal exception: ycode 0x"8001010e, line
930 in _Windows fatal exception: bcode 0xo8001010eo
tWindows fatal exception: scode 0xt8001010er
aWindows fatal exception: pcode 0x
8001010e
Thread 0xWindows fatal exception: 00003e80code 0x (most recent call first):
8001010e File
"Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
s\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010eh
iWindows fatal exception: mcode 0xe8001010er
aWindows fatal exception: Xcode 0x 8001010e1
.Windows fatal exception: 3code 0x\8001010eb
iWindows fatal exception: ncode 0x\8001010el
ib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\thWindows fatal exception: code 0x8001010e
readiWindows fatal exception: ncode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e574
in Windows fatal exception: wcode 0xa8001010ei
t
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm F8001010ei
leWindows fatal exception: scode 0x\8001010eC
hWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
imeWindows fatal exception: rcode 0xa8001010eX
Windows fatal exception: 1code 0x.8001010e3
\Windows fatal exception: bcode 0xi8001010en
\Windows fatal exception: lcode 0xi8001010eb
\Windows fatal exception: tcode 0xh8001010er
eWindows fatal exception: acode 0xd8001010ei
nWindows fatal exception: gcode 0x.8001010ep
yWindows fatal exception: "code 0x, line 8001010e1284
in run
File "C:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010eh
iWindows fatal exception: mcode 0xe8001010er
aWindows fatal exception: Xcode 0x8001010e
Windows fatal exception: 1code 0x.8001010e3
\Windows fatal exception: bcode 0xi8001010en
\Windows fatal exception: lcode 0xi8001010eb
\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lWindows fatal exception: icode 0xb8001010e\
thWindows fatal exception: rcode 0xe8001010ea
dWindows fatal exception: icode 0xn8001010eg
.Windows fatal exception: pcode 0xy8001010e"
, line Windows fatal exception: 930code 0x in 8001010e_
bWindows fatal exception: ocode 0xo8001010et
sWindows fatal exception: tcode 0xr8001010ea
pWindows fatal exception:
code 0x
8001010eThread 0x
00003e80 (most recent call first):
Windows fatal exception: File code 0x"8001010eC
:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialWindows fatal exception: ocode 0xg8001010e.
py"Windows fatal exception: , line code 0x1358001010e in
sWindows fatal exception: hcode 0xo8001010ew
_Windows fatal exception: ocode 0xp8001010ee
nWindows fatal exception: _code 0xf8001010ei
lWindows fatal exception: ecode 0x_8001010ed
iWindows fatal exception: acode 0xl8001010eo
gWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e
8001010e
Windows fatal exception: Windows fatal exception: File code 0xcode 0x8001010e8001010e"
Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010eh
iWindows fatal exception: mcode 0xe8001010er
aWindows fatal exception: Xcode 0x 8001010e1
.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e
8001010eThread 0x
000052f8 (most recent call first):
File "CWindows fatal exception: :code 0x\8001010eP
rWindows fatal exception: ocode 0xgWindows fatal exception: 8001010ecode 0x
8001010eWindows fatal exception: r
code 0xa8001010eWindows fatal exception: mcode 0x 8001010e
F
Windows fatal exception: iWindows fatal exception: code 0xcode 0x8001010el
8001010eWindows fatal exception: ecode 0xs8001010e\
C
hWindows fatal exception: icode 0xm8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010ee
rWindows fatal exception: a
X 1Windows fatal exception: .code 0x38001010e\
bicode 0x8001010eWindows fatal exception:
code 0x8001010e
Windows fatal exception: ncode 0x\8001010eWindows fatal exception:
lcode 0xi8001010eb
\thWindows fatal exception: rcode 0xe8001010ea
ding.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\uWindows fatal exception: icode 0x\8001010eg
ui.pWindows fatal exception: ycode 0x"8001010e, line
301Windows fatal exception: in code 0xe8001010ev
eWindows fatal exception: ncode 0xt8001010e_
lWindows fatal exception: ocode 0xo8001010ep
Windows fatal exception: File code 0x"8001010eC
:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
Windows fatal exception: Fcode 0xi8001010el
es\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn\li8001010eb
\Windows fatal exception: rcode 0x8001010eu
npWindows fatal exception: ycode 0x.8001010ep
y"Windows fatal exception: , line code 0x878001010e in
_rWindows fatal exception: ucode 0xn8001010e
_Windows fatal exception: ccode 0xo8001010ed
e
Windows fatal exception: File code 0x"8001010eC
:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e.
3\bWindows fatal exception: icode 0xn8001010e\
lWindows fatal exception: icode 0xb8001010e\
tWindows fatal exception: hcode 0xr8001010ee
aWindows fatal exception: dcode 0xi8001010en
gWindows fatal exception: .code 0xp8001010ey
"Windows fatal exception: , line code 0x9738001010e in
_Windows fatal exception: bcode 0xo8001010eo
tWindows fatal exception: scode 0xt8001010er
ap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_coWindows fatal exception: mcode 0xm8001010ea
nd\dWindows fatal exception: code 0x8001010e
iaWindows fatal exception: lcode 0xo8001010eg
.pWindows fatal exception: ycode 0x"8001010e, line
135 in Windows fatal exception: scode 0xh8001010eo
wWindows fatal exception: _code 0xo8001010ep
enWindows fatal exception: _code 0xf8001010ei
lWindows fatal exception: e_dicode 0xa8001010el
og
File "CWindows fatal exception: :code 0x\8001010eP
rogram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in code 0x
8001010e File
"C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xCWindows fatal exception: hcode 0xi8001010em
e8001010er
aWindows fatal exception: XWindows fatal exception: code 0x 8001010ecode 0x18001010e.
3\
Windows fatal exception: bcode 0xWindows fatal exception: icode 0xn8001010e\
l8001010eWindows fatal exception:
code 0xiWindows fatal exception: 8001010eb
\code 0xsWindows fatal exception: i8001010etcode 0x
8001010e
Windows fatal exception: ecode 0x-8001010ep
aWindows fatal exception: ccode 0xk8001010ea
gWindows fatal exception: ecode 0xs8001010e\
cWindows fatal exception: hcode 0xi8001010em
eWindows fatal exception: rcode 0xa8001010ex
\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lWindows fatal exception: icode 0xb8001010e\
sitWindows fatal exception: ecode 0x-8001010ep
acWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X_Windows fatal exception: mcode 0xa8001010ei
n.Windows fatal exception: pcode 0xy8001010e"
, line 1018Windows fatal exception: in code 0x
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeWindows fatal exception: rcode 0x8001010e
aWindows fatal exception: Xcode 0x 8001010e1
.Windows fatal exception: 3code 0x\8001010eb
iWindows fatal exception: ncode 0x\8001010el
iWindows fatal exception: bcode 0x\8001010er
uWindows fatal exception: ncode 0xp8001010ey
.Windows fatal exception: pcode 0xy8001010e"
, line Windows fatal exception: 197code 0x in 8001010e_
rWindows fatal exception: ucode 0xn8001010e_
module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\ProWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010et
hrWindows fatal exception: ecode 0xa8001010ed
inWindows fatal exception: gcode 0x.8001010ep
y", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threadingWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 574code 0x in 8001010ew
aWindows fatal exception: icode 0xt8001010e
File Windows fatal exception: "code 0xC8001010e:
\Windows fatal exception: Pcode 0xr8001010e
Windows fatal exception: code 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010eh
imeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.Windows fatal exception: 3code 0x\8001010eb
iWindows fatal exception: ncode 0x\8001010el
iWindows fatal exception: bcode 0x\8001010ethre
aWindows fatal exception: dcode 0xi8001010en
gWindows fatal exception: .code 0xp8001010ey
"Windows fatal exception: , line code 0x9738001010e in
_Windows fatal exception: bcode 0xo8001010eoWindows fatal exception: tcode 0xs8001010et
rWindows fatal exception: acode 0xp
_8001010ei
nWindows fatal exception: ncode 0xe8001010er
Windows fatal exception: File code 0x"8001010eC
:Windows fatal exception: \code 0xP8001010er
oWindows fatal exception: gcode 0xr8001010eam
Windows fatal exception: Fcode 0xi8001010e
lWindows fatal exception: ecode 0xs\Chi8001010em
eWindows fatal exception: code 0x8001010e
raX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000052f8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
[deleted to fit within ticket limits]
Thread 0x00002964 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002964 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00002964 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003e80 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\numpy\core\_methods.py", line 57 in _any
Windows fatal exception: access violation
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\Users\Marianna\Desktop\Desktop
> lavoro\Marianna\Dottorato\DNA_repair\UvrA-UvrB\Draft paper\2024-03-13\Figura
> 5 - ATP\ADP_session.cxs" format session
Opened 519-EMready.mrc as #2, grid size 400,400,400, pixel 0.84, shown at
level 2.16, step 1, values float32
opened ChimeraX session
> ui mousemode right clip
> ui mousemode right "clip rotate"
> select clear
> cartoon style modeHelix tube sides 20
> select ::name="ADP"
54 atoms, 58 bonds, 2 residues, 1 model selected
> ui tool show "Surface Zone"
> surface zone #2 nearAtoms #1 distance 2.56
> surface zone #2 nearAtoms sel distance 2.56
> ui mousemode right zoom
> select /B:636@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> select clear
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 5 - ATP/ADP_session.cxs"
> set bgColor white
> select ::name="ADP"
54 atoms, 58 bonds, 2 residues, 1 model selected
> view sel
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> view sel
> select /B:924
4 atoms, 3 bonds, 1 residue, 1 model selected
> select up
13 atoms, 12 bonds, 3 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select /B:491@CD1
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /B:663
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
37 atoms, 36 bonds, 5 residues, 1 model selected
> hide sel cartoons
> select clear
> select /B:636@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> select clear
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 5 - ATP/ADP_distal2.bmp" width 1319 height 765 supersample 3
> view
> surface unzone #2
> select sequence H12
Nothing selected
> ui tool show "Show Sequence Viewer"
> sequence chain /A /B
Alignment identifier is 1
> select /A-B:3
16 atoms, 14 bonds, 2 residues, 1 model selected
> select /A-B:3
16 atoms, 14 bonds, 2 residues, 1 model selected
> select
> /A-B:4-8,20-23,27-32,76-78,83-86,291-293,358-362,378-380,408-410,523-526,555-558,570-574,585-589,626-630,642-645,649-654,688-690,698-701,761-764,772-775,866-869,897-901,913-917,928-932
1632 atoms, 1614 bonds, 206 residues, 1 model selected
> select clear
> select /A-B:3
16 atoms, 14 bonds, 2 residues, 1 model selected
> select /A-B:3
16 atoms, 14 bonds, 2 residues, 1 model selected
> select /A-B:3-13
180 atoms, 180 bonds, 22 residues, 1 model selected
> select /A-B:3
16 atoms, 14 bonds, 2 residues, 1 model selected
> select /A-B:3-14
196 atoms, 196 bonds, 24 residues, 1 model selected
> select /A-B:13
20 atoms, 20 bonds, 2 residues, 1 model selected
> select /A-B:13
20 atoms, 20 bonds, 2 residues, 1 model selected
> view sel
> surface zone #2 nearAtoms sel distance 2.56
> surface zone #2 nearAtoms sel distance 11.69
> select
> /A-B:38-42,46-57,99-102,105-116,270-273,296-299,313-316,320-335,348-356,382-393,397-405,427-429,442-447,450-458,464-487,498-500,503-517,535-551,592-596,601-607,660-664,668-676,692-694,714-718,720-729,732-737,741-744,754-756,786-790,793-795,798-803,806-811,817-829,840-842,845-858,878-893,905-910,922-924,934-939,944-951
4920 atoms, 4908 bonds, 628 residues, 1 model selected
> select clear
> select /A-B:13
20 atoms, 20 bonds, 2 residues, 1 model selected
> select /A-B:38
18 atoms, 16 bonds, 2 residues, 1 model selected
> select /A-B:38
18 atoms, 16 bonds, 2 residues, 1 model selected
> select
> /A-B:38-42,46-57,99-102,105-116,270-273,296-299,313-316,320-335,348-356,382-393,397-405,427-429,442-447,450-458,464-487,498-500,503-517,535-551,592-596,601-607,660-664,668-676,692-694,714-718,720-729,732-737,741-744,754-756,786-790,793-795,798-803,806-811,817-829,840-842,845-858,878-893,905-910,922-924,934-939,944-951
4920 atoms, 4908 bonds, 628 residues, 1 model selected
> select /A-B:13
20 atoms, 20 bonds, 2 residues, 1 model selected
> select /A-B:13
20 atoms, 20 bonds, 2 residues, 1 model selected
> select
> /A-B:38-42,46-57,99-102,105-116,270-273,296-299,313-316,320-335,348-356,382-393,397-405,427-429,442-447,450-458,464-487,498-500,503-517,535-551,592-596,601-607,660-664,668-676,692-694,714-718,720-729,732-737,741-744,754-756,786-790,793-795,798-803,806-811,817-829,840-842,845-858,878-893,905-910,922-924,934-939,944-951
4920 atoms, 4908 bonds, 628 residues, 1 model selected
> select clear
> select
> /A-B:38-42,46-57,99-102,105-116,270-273,296-299,313-316,320-335,348-356,382-393,397-405,427-429,442-447,450-458,464-487,498-500,503-517,535-551,592-596,601-607,660-664,668-676,692-694,714-718,720-729,732-737,741-744,754-756,786-790,793-795,798-803,806-811,817-829,840-842,845-858,878-893,905-910,922-924,934-939,944-951
4920 atoms, 4908 bonds, 628 residues, 1 model selected
> select clear
> select /A-B:13
20 atoms, 20 bonds, 2 residues, 1 model selected
> select /A:38
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add /A:13
19 atoms, 18 bonds, 2 residues, 1 model selected
> surface zone #2 nearAtoms sel distance 11.69
> surface zone #2 nearAtoms sel distance 6.39
> view sel
> show sel cartoons
> show sel atoms
> select up
121 atoms, 120 bonds, 16 residues, 1 model selected
> show sel atoms
> select clear
> select /A:41
8 atoms, 7 bonds, 1 residue, 1 model selected
> select clear
> select /A:42
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
34 atoms, 33 bonds, 5 residues, 1 model selected
> cartoon style sel xsection oval modeHelix default
> select clear
No atoms selected for zoning
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select add /A:13@CE1
3 atoms, 1 bond, 2 residues, 1 model selected
> select up
19 atoms, 18 bonds, 2 residues, 1 model selected
> surface zone #2 nearAtoms sel distance 10.99
> surface zone #2 nearAtoms sel distance 11.87
> select add /A:844
25 atoms, 23 bonds, 3 residues, 1 model selected
> surface zone #2 nearAtoms sel distance 2.85
> surface unzone #2
> surface zone #2 nearAtoms sel distance 2.85
> surface zone #2 nearAtoms sel distance 8.44
> view sel
> select clear
> select /A:35
4 atoms, 3 bonds, 1 residue, 1 model selected
> select clear
> select #2
4 models selected
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
4 atoms, 2 bonds, 2 residues, 1 model selected
> select add /A:844
10 atoms, 7 bonds, 3 residues, 1 model selected
> surface zone #2 nearAtoms sel distance 7.82
> select clear
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 5 - ATP/empty_proximal.bmp" width 2000 height 1160 supersample 3
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 5 - ATP/ADP_session_proximal.cxs"
> close session
> open "C:\Users\Marianna\Desktop\Desktop
> lavoro\Marianna\Dottorato\DNA_repair\UvrA-UvrB\Draft paper\2024-03-13\Figura
> 6 - A2B1DNA\A2B1DNA.cxs" format session
Opened J640_004_volume_map.mrc as #1, grid size 400,400,400, pixel 0.84, shown
at level 0.161, step 1, values float32
opened ChimeraX session
> show #!3 models
> select add #2/A:116
226 atoms, 230 bonds, 30 residues, 1 model selected
> select up
377 atoms, 387 bonds, 48 residues, 1 model selected
> select up
6080 atoms, 6185 bonds, 794 residues, 1 model selected
> select down
377 atoms, 387 bonds, 48 residues, 1 model selected
> select add #2/A:104
386 atoms, 395 bonds, 49 residues, 1 model selected
> select up
393 atoms, 403 bonds, 50 residues, 1 model selected
> select add #2/A:102
401 atoms, 410 bonds, 51 residues, 1 model selected
> select up
419 atoms, 429 bonds, 54 residues, 1 model selected
> select add #2/A:97
425 atoms, 434 bonds, 55 residues, 1 model selected
> select up
516 atoms, 527 bonds, 66 residues, 1 model selected
> select subtract #2/A:87
508 atoms, 520 bonds, 65 residues, 1 model selected
> select subtract #2/A:88
499 atoms, 512 bonds, 64 residues, 1 model selected
> select subtract #2/A:89
490 atoms, 504 bonds, 63 residues, 1 model selected
> select subtract #2/A:295
482 atoms, 497 bonds, 62 residues, 1 model selected
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #3/B
Alignment identifier is 3/B
> select #3/B:90
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #3/B:90-122
261 atoms, 267 bonds, 33 residues, 1 model selected
> show sel cartoons
> toolshed show
> select clear
> select #2/A:116
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
107 atoms, 109 bonds, 12 residues, 1 model selected
> select up
6080 atoms, 6185 bonds, 794 residues, 1 model selected
> select down
107 atoms, 109 bonds, 12 residues, 1 model selected
> select add #2/A:292
116 atoms, 117 bonds, 13 residues, 1 model selected
> select clear
> open "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/SIG1_UvrA.pdb"
Chain information for SIG1_UvrA.pdb #4
---
Chain | Description
B | No description available
> ui tool show Matchmaker
> matchmaker #!4 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3zqj.pdb, chain B (#3) with SIG1_UvrA.pdb, chain B (#4), sequence
alignment score = 182.1
RMSD between 62 pruned atom pairs is 0.001 angstroms; (across all 62 pairs:
0.001)
> hide #!3 models
> cartoon style #2,4 modeHelix tube sides 20
> color #4 plum transparency 0
> select ::name="ADP"
54 atoms, 58 bonds, 2 residues, 1 model selected
> show sel atoms
> select clear
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> select clear
> select #2/B:762
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
32 atoms, 31 bonds, 4 residues, 1 model selected
> select up
6356 atoms, 6458 bonds, 832 residues, 1 model selected
> select down
32 atoms, 31 bonds, 4 residues, 1 model selected
> select add #2/B:765
41 atoms, 39 bonds, 5 residues, 1 model selected
> select up
91 atoms, 92 bonds, 11 residues, 1 model selected
> select add #2/B:774
98 atoms, 98 bonds, 12 residues, 1 model selected
> select up
124 atoms, 127 bonds, 15 residues, 1 model selected
> select add #2/A:763
133 atoms, 135 bonds, 16 residues, 1 model selected
> select up
149 atoms, 151 bonds, 18 residues, 1 model selected
> select add #2/A:773
161 atoms, 163 bonds, 19 residues, 1 model selected
> select up
175 atoms, 177 bonds, 21 residues, 1 model selected
> select add #2/A:766
183 atoms, 184 bonds, 22 residues, 1 model selected
> select up
234 atoms, 239 bonds, 28 residues, 1 model selected
> ui tool show "Color Actions"
> color sel midnight blue
> select clear
> open "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/C-ter_Zn_finger.pdb"
Chain information for C-ter_Zn_finger.pdb #5
---
Chain | Description
B D | No description available
> ui tool show Matchmaker
> matchmaker #5 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3zqj.pdb, chain B (#3) with C-ter_Zn_finger.pdb, chain B (#5),
sequence alignment score = 101.8
RMSD between 19 pruned atom pairs is 0.001 angstroms; (across all 19 pairs:
0.001)
> color #5 plum transparency 0
> color #2 #8d8d8d transparency 0
> undo
> select #2/A:294
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
15 atoms, 14 bonds, 2 residues, 1 model selected
> select down
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add #2/A:293
16 atoms, 14 bonds, 2 residues, 1 model selected
> select up
44 atoms, 43 bonds, 5 residues, 1 model selected
> select #2/A:290
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #2/A:292
17 atoms, 15 bonds, 2 residues, 1 model selected
> select up
146 atoms, 149 bonds, 20 residues, 1 model selected
> select add #2/A:273
157 atoms, 160 bonds, 21 residues, 1 model selected
> select up
181 atoms, 186 bonds, 24 residues, 1 model selected
> select add #2/A:268
189 atoms, 193 bonds, 25 residues, 1 model selected
> select up
255 atoms, 262 bonds, 34 residues, 1 model selected
> select add #2/A:116
260 atoms, 266 bonds, 35 residues, 1 model selected
> select up
362 atoms, 372 bonds, 46 residues, 1 model selected
> select add #2/A:52
373 atoms, 382 bonds, 47 residues, 1 model selected
> select subtract #2/A:52
362 atoms, 372 bonds, 46 residues, 1 model selected
> select add #2/A:101
369 atoms, 378 bonds, 47 residues, 1 model selected
> select up
388 atoms, 397 bonds, 50 residues, 1 model selected
> select add #2/B:57
394 atoms, 402 bonds, 51 residues, 1 model selected
> select subtract #2/B:57
388 atoms, 397 bonds, 50 residues, 1 model selected
> select add #2/A:103
395 atoms, 403 bonds, 51 residues, 1 model selected
> select up
404 atoms, 414 bonds, 52 residues, 1 model selected
> select add #2/A:98
411 atoms, 420 bonds, 53 residues, 1 model selected
> select up
501 atoms, 512 bonds, 64 residues, 1 model selected
> select subtract #2/A:88
492 atoms, 504 bonds, 63 residues, 1 model selected
> select subtract #2/A:89
483 atoms, 496 bonds, 62 residues, 1 model selected
> select add #2/A:294
490 atoms, 502 bonds, 63 residues, 1 model selected
> select clear
> color #2 #8d8d8d transparency 0
> select #2/A:90
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:90-294
482 atoms, 493 bonds, 1 pseudobond, 62 residues, 2 models selected
> ui tool show "Color Actions"
> color (#!2 & sel) #b1b1e7ff
> select #2/B:761
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
32 atoms, 31 bonds, 4 residues, 1 model selected
> select add #2/B:774
39 atoms, 37 bonds, 5 residues, 1 model selected
> select up
65 atoms, 65 bonds, 8 residues, 1 model selected
> select add #2/A:55
72 atoms, 71 bonds, 9 residues, 1 model selected
> select subtract #2/A:55
65 atoms, 65 bonds, 8 residues, 1 model selected
> select add #2/A:55
72 atoms, 71 bonds, 9 residues, 1 model selected
> select subtract #2/A:55
65 atoms, 65 bonds, 8 residues, 1 model selected
> select add #2/B:769
73 atoms, 72 bonds, 9 residues, 1 model selected
> select up
124 atoms, 127 bonds, 15 residues, 1 model selected
> select add #2/A:762
132 atoms, 134 bonds, 16 residues, 1 model selected
> select up
149 atoms, 151 bonds, 18 residues, 1 model selected
> select add #2/A:774
156 atoms, 157 bonds, 19 residues, 1 model selected
> select up
175 atoms, 177 bonds, 21 residues, 1 model selected
> select add #2/A:765
184 atoms, 185 bonds, 22 residues, 1 model selected
> select up
234 atoms, 239 bonds, 28 residues, 1 model selected
> color sel #ffffffff
> color sel #b1b1e7ff
> select clear
> select #2/A:90
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:90-293
475 atoms, 486 bonds, 1 pseudobond, 61 residues, 2 models selected
> ui tool show "Color Actions"
> color sel midnight blue
> select clear
> select #2/B:762
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
32 atoms, 31 bonds, 4 residues, 1 model selected
> select add #2/B:774
39 atoms, 37 bonds, 5 residues, 1 model selected
> select up
65 atoms, 65 bonds, 8 residues, 1 model selected
> select add #2/B:768
76 atoms, 76 bonds, 9 residues, 1 model selected
> select up
124 atoms, 127 bonds, 15 residues, 1 model selected
> select add #2/A:772
131 atoms, 133 bonds, 16 residues, 1 model selected
> select up
150 atoms, 153 bonds, 18 residues, 1 model selected
> select add #2/A:765
159 atoms, 161 bonds, 19 residues, 1 model selected
> select up
209 atoms, 214 bonds, 25 residues, 1 model selected
> select add #2/A:763
218 atoms, 222 bonds, 26 residues, 1 model selected
> select up
234 atoms, 239 bonds, 28 residues, 1 model selected
> ui tool show "Color Actions"
> color sel midnight blue
> select clear
> select #2/A:294
7 atoms, 6 bonds, 1 residue, 1 model selected
> ui tool show "Color Actions"
> color sel midnight blue
> select clear
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/A2B1DNA_b.cxs"
> close session
> open "C:\Users\Marianna\Desktop\Desktop
> lavoro\Marianna\Dottorato\DNA_repair\UvrA-UvrB\Draft paper\2024-03-13\Figura
> 6 - A2B1DNA\A2B1DNA_b.cxs" format session
No such file/path: C:\Users\Marianna\Desktop\Desktop
lavoro\Marianna\Dottorato\DNA_repair\UvrA-UvrB\Draft paper\2024-03-13\Figura 6
- A2B1DNA\A2B1DNA_b.cxs
> open "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/A2B1DNA_SIG1.cxs"
Opened J640_004_volume_map.mrc as #1, grid size 400,400,400, pixel 0.84, shown
at level 0.161, step 1, values float32
opened ChimeraX session
> color #2 white transparency 0
> color #2 #b1b1e7 transparency 0
> select clear
> color #2 #8d8d8d transparency 0
> open "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/ID.pdb" "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/UBD.pdb"
Chain information for ID.pdb #4
---
Chain | Description
B | No description available
Chain information for UBD.pdb #5
---
Chain | Description
B | No description available
> ui tool show Matchmaker
> matchmaker #!4-5 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3zqj.pdb, chain B (#3) with ID.pdb, chain B (#4), sequence
alignment score = 528.5
RMSD between 105 pruned atom pairs is 0.001 angstroms; (across all 105 pairs:
0.001)
Matchmaker 3zqj.pdb, chain B (#3) with UBD.pdb, chain B (#5), sequence
alignment score = 589
RMSD between 120 pruned atom pairs is 0.001 angstroms; (across all 120 pairs:
0.001)
> hide #!5 models
> open "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/UBD.pdb"
Chain information for UBD.pdb #6
---
Chain | Description
D | No description available
> ui tool show Matchmaker
> matchmaker #!6 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3zqj.pdb, chain D (#3) with UBD.pdb, chain D (#6), sequence
alignment score = 618.2
RMSD between 126 pruned atom pairs is 0.001 angstroms; (across all 126 pairs:
0.001)
> color #6 plum transparency 0
> color #4 plum transparency 0
> select #2/A:296
7 atoms, 7 bonds, 1 residue, 1 model selected
> select up
31 atoms, 31 bonds, 4 residues, 1 model selected
> select #2/A:294
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:294
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:294-295
15 atoms, 14 bonds, 2 residues, 1 model selected
> select #2/A:294-298
39 atoms, 39 bonds, 5 residues, 1 model selected
> select #2/A:294
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/A:294-409
816 atoms, 834 bonds, 1 pseudobond, 103 residues, 2 models selected
> ui tool show "Color Actions"
> color sel midnight blue
> select clear
> select #2/B:185
10 atoms, 10 bonds, 1 residue, 1 model selected
> select clear
> select #2/B:132
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add #2/B:133
14 atoms, 13 bonds, 2 residues, 1 model selected
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #2/B
Alignment identifier is 2/B
> select clear
> select #2/B:132
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:123
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:123-265
1052 atoms, 1066 bonds, 1 pseudobond, 135 residues, 2 models selected
> ui tool show "Color Actions"
> color sel midnight blue
> select clear
> cartoon style #2,4,6 modeHelix tube sides 20
> select #2/B:165
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
1126 atoms, 1143 bonds, 145 residues, 1 model selected
> select down
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #2/B:168
16 atoms, 14 bonds, 2 residues, 1 model selected
> select add #2/B:171
24 atoms, 21 bonds, 3 residues, 1 model selected
> select up
1126 atoms, 1143 bonds, 145 residues, 1 model selected
> select down
24 atoms, 21 bonds, 3 residues, 1 model selected
> select add #2/B:167
35 atoms, 32 bonds, 4 residues, 1 model selected
> select add #2/B:166
43 atoms, 39 bonds, 5 residues, 1 model selected
> select add #2/B:169
52 atoms, 47 bonds, 6 residues, 1 model selected
> select add #2/B:170
60 atoms, 54 bonds, 7 residues, 1 model selected
> select add #2/B:172
65 atoms, 58 bonds, 8 residues, 1 model selected
> ui tool show "Build Structure"
> ui tool show "Model Loops"
> toolshed show
> ui tool show "Modeller Comparative"
> ui tool show "Model Loops"
> select clear
> hide #!6 models
> show #!6 models
> hide #!6 models
> select clear
> select #2/B:200
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/B:123
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:123-173
400 atoms, 405 bonds, 51 residues, 1 model selected
> select clear
> select #2/B:123
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:123-265
1052 atoms, 1066 bonds, 1 pseudobond, 135 residues, 2 models selected
> ui tool show "Color Actions"
> color (#!2 & sel) #88dd88ff
> color (#!2 & sel) #8d8d8dff
> select clear
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/ID repositioning.bmp" width 2000 height 1252 supersample 3
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/ID repositioning_2.bmp" width 2000 height 1252 supersample 3
> hide #!4 models
> show #!6 models
> select #2/B:123
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:123-265
1052 atoms, 1066 bonds, 1 pseudobond, 135 residues, 2 models selected
> ui tool show "Color Actions"
> color sel midnight blue
> select clear
> select #2/A:351
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/A:266
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:266-409
1030 atoms, 1054 bonds, 1 pseudobond, 131 residues, 2 models selected
> select #2/A:266
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:266-381
795 atoms, 816 bonds, 1 pseudobond, 103 residues, 2 models selected
> color (#!2 & sel) #88dd88ff
> color (#!2 & sel) #8d8d8dff
> select #2/A:409
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:382
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #2/A:382-410
242 atoms, 244 bonds, 29 residues, 1 model selected
> color sel #88dd88ff
> color sel #8d8d8dff
> select clear
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/UBD repositioning.bmp" width 2000 height 1252 supersample 3
> save "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/UBD repositioning_2.bmp" width 2000 height 1252 supersample 3
> hide #!6 models
> show #!3 models
> open "C:/Users/Marianna/Desktop/Desktop
> lavoro/Marianna/Dottorato/DNA_repair/UvrA-UvrB/Draft paper/2024-03-13/Figura
> 6 - A2B1DNA/A2B1DNA_SIG1.cxs"
Opened J640_004_volume_map.mrc as #1, grid size 400,400,400, pixel 0.84, shown
at level 0.161, step 1, values float32
opened ChimeraX session
> show #!3 models
> select clear
> select #2/A:294
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
15 atoms, 14 bonds, 2 residues, 1 model selected
> select down
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add #2/A:292
16 atoms, 14 bonds, 2 residues, 1 model selected
> select add #2/A:293
25 atoms, 22 bonds, 3 residues, 1 model selected
> select up
44 atoms, 43 bonds, 5 residues, 1 model selected
> hide #!3 models
> select add #2/A:290
52 atoms, 50 bonds, 6 residues, 1 model selected
> select up
161 atoms, 164 bonds, 22 residues, 1 model selected
> select add #2/A:273
172 atoms, 175 bonds, 23 residues, 1 model selected
> select up
196 atoms, 201 bonds, 26 residues, 1 model selected
> select add #2/A:268
204 atoms, 208 bonds, 27 residues, 1 model selected
> select up
270 atoms, 277 bonds, 36 residues, 1 model selected
> select add #2/A:116
275 atoms, 281 bonds, 37 residues, 1 model selected
> select up
377 atoms, 387 bonds, 48 residues, 1 model selected
> select add #2/A:101
384 atoms, 393 bonds, 49 residues, 1 model selected
> select up
403 atoms, 412 bonds, 52 residues, 1 model selected
> select add #2/A:104
412 atoms, 420 bonds, 53 residues, 1 model selected
> select up
419 atoms, 429 bonds, 54 residues, 1 model selected
> select add #2/A:98
426 atoms, 435 bonds, 55 residues, 1 model selected
> select up
516 atoms, 527 bonds, 66 residues, 1 model selected
> select subtract #2/A:295
508 atoms, 520 bonds, 65 residues, 1 model selected
> select subtract #2/A:89
499 atoms, 512 bonds, 64 residues, 1 model selected
> select subtract #2/A:88
490 atoms, 504 bonds, 63 residues, 1 model selected
> select subtract #2/A:87
482 atoms, 497 bonds, 62 residues, 1 model selected
> show #!3 models
> select clear
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 31.0.101.4887
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Manufacturer: HP
Model: HP ProBook 430 G8 Notebook PC
OS: Microsoft Windows 11 Pro (Build 22631)
Memory: 16,895,152,128
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i7-1165G7 @ 2.80GHz
OSLanguage: it-IT
Locale: ('it_IT', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 19 months ago
| Component: | Unassigned → Platform |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 19 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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