![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 18 months ago
Closed 18 months ago
#15094 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.4.1-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff84c382100 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 2000 in save_state
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 219 in take_snapshot
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 1417 in take_snapshot
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py", line 296 in process
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py", line 273 in discovery
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py", line 636 in save
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py", line 912 in save
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core_formats/__init__.py", line 95 in save
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py", line 101 in provider_save
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py", line 86 in cmd_save
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py", line 62 in display
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py", line 138 in show_save_file_dialog
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py", line 127 in
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imagingmath, chimerax.segment._segment, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, numpy.linalg.lapack_lite (total: 62)
{"app_name":"ChimeraX","timestamp":"2024-05-02 19:43:18.00 +0100","app_version":"1.7.1","slice_uuid":"194a3167-3db5-3029-8d22-1d742b826bb9","build_version":"1.7.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.4.1 (23E224)","roots_installed":0,"name":"ChimeraX","incident_id":"58C8F883-0041-404C-A67C-06DD1B66BCF2"}
{
"uptime" : 430000,
"procRole" : "Background",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"coalitionID" : 6202,
"osVersion" : {
"train" : "macOS 14.4.1",
"build" : "23E224",
"releaseType" : "User"
},
"captureTime" : "2024-05-02 19:42:56.1369 +0100",
"codeSigningMonitor" : 0,
"incident" : "58C8F883-0041-404C-A67C-06DD1B66BCF2",
"pid" : 88668,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-04-25 16:59:13.7822 +0100",
"procStartAbsTime" : 181062197525871,
"procExitAbsTime" : 430489690089495,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"5FC18D3C-1898-50CA-92F1-24E40C066179","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "22AFD314-FBF5-45F4-A151-6BB76F846F16",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 29905,
"bridgeVersion" : {"build":"21P4222","train":"8.4"},
"sleepWakeUUID" : "C2C097EB-C33B-4572-8A72-187BD68C5E4C",
"sip" : "enabled",
"vmRegionInfo" : "0xa9 is not in any region. Bytes before following region: 4453363543\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10970f000-109713000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":88668},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"vmregioninfo" : "0xa9 is not in any region. Bytes before following region: 4453363543\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10970f000-109713000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[255,255,255,255,72,137,216,72,139,0,72,255,194,72,57,195,117,245,72,141,61,197,18,22,0,72,141,181,112,255,255,255,49,192,232,191,131,254,255,72,139,5,104,231,22,0,72,139,0,72,59,69,216,117,13,72,131,196,112,91,65,92,65,94,65,95,93,195,232,205,174,14,0,102,46,15,31,132,0,0,0,0,0,15,31,0,85,72,137,229,83,80,72,139,71,8,246,128,169,0,0,0,64,117,9,49,192,72,131,196,8,91,93,195,72,137,251,72,139,128,72,1,0,0,72,133,192,117,18,72,139,67,248,168,2,116,224,72,131,192,252,72,137,67,248,235,214,72,137,223,255,208,133,192,117,229,235,203,15,31,132,0,0,0,0,0,85,72,137,229,65,86,83,72,139,71,8,246,128,169,0,0,0,64,117,7,49,192,91,65,94,93],"offset":96}},"frames":[{"imageOffset":33098,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":155},{"imageOffset":24253,"symbol":"pthread_kill","symbolLocation":262,"imageIndex":156},{"imageOffset":270120,"symbol":"raise","symbolLocation":24,"imageIndex":157},{"imageOffset":2590164,"symbol":"faulthandler_fatal_error","symbolLocation":388,"imageIndex":153},{"imageOffset":16349,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":158},{"imageOffset":0,"imageIndex":159},{"imageOffset":1210612,"symbol":"tupletraverse","symbolLocation":52,"imageIndex":153},{"imageOffset":2574472,"symbol":"gc_collect_main","symbolLocation":2568,"imageIndex":153},{"imageOffset":2580738,"symbol":"_PyObject_GC_Link","symbolLocation":306,"imageIndex":153},{"imageOffset":913329,"symbol":"PyList_New","symbolLocation":369,"imageIndex":153},{"imageOffset":615146,"symbol":"atomstruct::Structure::session_info(_object*, _object*, _object*) const","symbolLocation":1418,"imageIndex":74},{"imageOffset":131883,"symbol":"structure_session_info","symbolLocation":11,"imageIndex":72},{"imageOffset":10386,"symbol":"ffi_call_unix64","symbolLocation":82,"imageIndex":160},{"imageOffset":8718,"symbol":"ffi_call_int","symbolLocation":808,"imageIndex":160},{"imageOffset":49974,"symbol":"_ctypes_callproc","symbolLocation":678,"imageIndex":127},{"imageOffset":27115,"symbol":"PyCFuncPtr_call","symbolLocation":267,"imageIndex":127},{"imageOffset":680881,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":153},{"imageOffset":1917927,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60455,"imageIndex":153},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":153},{"imageOffset":1930570,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":73098,"imageIndex":153},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":153},{"imageOffset":698143,"symbol":"method_vectorcall","symbolLocation":207,"imageIndex":153},{"imageOffset":1930570,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":73098,"imageIndex":153},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":153},{"imageOffset":683896,"symbol":"_PyVectorcall_Call","symbolLocation":120,"imageIndex":153},{"imageOffset":1930570,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":73098,"imageIndex":153},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":153},{"imageOffset":683896,"symbol":"_PyVectorcall_Call","symbolLocation":120,"imageIndex":153},{"imageOffset":1930570,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":73098,"imageIndex":153},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":153},{"imageOffset":698143,"symbol":"method_vectorcall","symbolLocation":207,"imageIndex":153},{"imageOffset":1930570,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":73098,"imageIndex":153},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":153},{"imageOffset":1257368,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":40,"imageIndex":109},{"imageOffset":1257114,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":362,"imageIndex":109},{"imageOffset":1261029,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":85,"imageIndex":109},{"imageOffset":1260890,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":58,"imageIndex":109},{"imageOffset":777575,"imageIndex":110},{"imageOffset":3947277,"symbol":"QAction::activate(QAction::ActionEvent)","symbolLocation":397,"imageIndex":106},{"imageOffset":747321,"symbol":"QObject::event(QEvent*)","symbolLocation":729,"imageIndex":110},{"imageOffset":382127,"symbol":"sipQAction::event(QEvent*)","symbolLocation":191,"imageIndex":103},{"imageOffset":51847,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":247,"imageIndex":105},{"imageOffset":55875,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":499,"imageIndex":105},{"imageOffset":1282534,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":230,"imageIndex":104},{"imageOffset":449594,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":170,"imageIndex":110},{"imageOffset":453970,"symbol":"QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*)","symbolLocation":802,"imageIndex":110},{"imageOffset":105355,"imageIndex":86},{"imageOffset":107163,"imageIndex":86},{"imageOffset":506535,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__","symbolLocation":17,"imageIndex":161},{"imageOffset":506441,"symbol":"__CFRunLoopDoSource0","symbolLocation":157,"imageIndex":161},{"imageOffset":505876,"symbol":"__CFRunLoopDoSources0","symbolLocation":215,"imageIndex":161},{"imageOffset":500881,"symbol":"__CFRunLoopRun","symbolLocation":919,"imageIndex":161},{"imageOffset":498482,"symbol":"CFRunLoopRunSpecific","symbolLocation":557,"imageIndex":161},{"imageOffset":190505,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":162},{"imageOffset":189542,"symbol":"ReceiveNextEventCommon","symbolLocation":201,"imageIndex":162},{"imageOffset":189313,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":66,"imageIndex":162},{"imageOffset":256997,"symbol":"_DPSNextEvent","symbolLocation":880,"imageIndex":163},{"imageOffset":9760745,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1273,"imageIndex":163},{"imageOffset":196613,"symbol":"-[NSApplication run]","symbolLocation":603,"imageIndex":163},{"imageOffset":102572,"imageIndex":86},{"imageOffset":488230,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":486,"imageIndex":110},{"imageOffset":451125,"symbol":"QCoreApplication::exec()","symbolLocation":133,"imageIndex":110},{"imageOffset":2252186,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":90,"imageIndex":104},{"imageOffset":1095658,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":153},{"imageOffset":680881,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":153},{"imageOffset":1917927,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60455,"imageIndex":153},{"imageOffset":1852538,"symbol":"PyEval_EvalCode","symbolLocation":282,"imageIndex":153},{"imageOffset":1830115,"symbol":"builtin_exec","symbolLocation":483,"imageIndex":153},{"imageOffset":1098052,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":68,"imageIndex":153},{"imageOffset":1917679,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60207,"imageIndex":153},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":153},{"imageOffset":2561789,"symbol":"pymain_run_module","symbolLocation":253,"imageIndex":153},{"imageOffset":2560449,"symbol":"Py_RunMain","symbolLocation":2225,"imageIndex":153},{"imageOffset":2564475,"symbol":"pymain_main","symbolLocation":43,"imageIndex":153},{"imageOffset":2564426,"symbol":"Py_Main","symbolLocation":42,"imageIndex":153},{"imageOffset":15770,"symbol":"main","symbolLocation":122,"imageIndex":154},{"imageOffset":25446,"symbol":"start","symbolLocation":1942,"imageIndex":164}],"id":3081518,"triggered":true,"threadState":{"r13":{"value":5537804289},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":140704407363840,"symbolLocation":0,"symbol":"_main_thread"},"rsi":{"value":11},"r8":{"value":2},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140704407363840,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":14757395258967641293},"r15":{"value":22},"rbx":{"value":11},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703277613386,"matchesCrashFrame":1},"rbp":{"value":140682560657936},"rsp":{"value":140682560657896},"r12":{"value":259},"rcx":{"value":140682560657896},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":3081836,"name":"ThreadPoolServiceThread","threadState":{"r13":{"value":123145379073416},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140682561447576},"rsi":{"value":0},"r8":{"value":4},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553151000576},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":0},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703277624966},"rbp":{"value":123145379073392},"rsp":{"value":123145379073320},"r12":{"value":140682565069792},"rcx":{"value":123145379073320},"flavor":"x86_THREAD_STATE","rdi":{"value":13}},"frames":[{"imageOffset":44678,"symbol":"kevent64","symbolLocation":10,"imageIndex":155},{"imageOffset":66456106,"imageIndex":94},{"imageOffset":66455847,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":65958573,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081838,"name":"ThreadPoolBackgroundWorker","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":199024489529344},"r9":{"value":199024489529344},"r15":{"value":199024489529344},"rbx":{"value":123145395875232},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145395874560},"rsp":{"value":123145395874456},"r12":{"value":33000},"rcx":{"value":123145395874456},"flavor":"x86_THREAD_STATE","rdi":{"value":123145395875232}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66009023,"imageIndex":94},{"imageOffset":66011756,"imageIndex":94},{"imageOffset":66010589,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081839,"name":"Chrome_IOThread","threadState":{"r13":{"value":123145404276072},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140682567771928},"rsi":{"value":0},"r8":{"value":3},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553151361984},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":0},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703277624966},"rbp":{"value":123145404276048},"rsp":{"value":123145404275976},"r12":{"value":140682716487472},"rcx":{"value":123145404275976},"flavor":"x86_THREAD_STATE","rdi":{"value":14}},"frames":[{"imageOffset":44678,"symbol":"kevent64","symbolLocation":10,"imageIndex":155},{"imageOffset":66456106,"imageIndex":94},{"imageOffset":66455847,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":48386978,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081840,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":208920094179328},"r9":{"value":208920094179328},"r15":{"value":208920094179328},"rbx":{"value":123145412676752},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145412676080},"rsp":{"value":123145412675976},"r12":{"value":0},"rcx":{"value":123145412675976},"flavor":"x86_THREAD_STATE","rdi":{"value":123145412676752}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66251759,"imageIndex":94},{"imageOffset":65421769,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081844,"name":"CompositorTileWorker1","threadState":{"r13":{"value":2203318223616},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145446281216},"rsi":{"value":2203318223616},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":512},"r10":{"value":0},"r9":{"value":161},"r15":{"value":512},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703277596538},"rbp":{"value":123145446280896},"rsp":{"value":123145446280744},"r12":{"value":0},"rcx":{"value":123145446280744},"flavor":"x86_THREAD_STATE","rdi":{"value":140682710779096}},"frames":[{"imageOffset":16250,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":155},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":156},{"imageOffset":66219291,"imageIndex":94},{"imageOffset":100616493,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081845,"name":"Chrome_InProcGpuThread","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":223213745340416},"r9":{"value":223213745340416},"r15":{"value":223213745340416},"rbx":{"value":123145454681232},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145454680560},"rsp":{"value":123145454680456},"r12":{"value":0},"rcx":{"value":123145454680456},"flavor":"x86_THREAD_STATE","rdi":{"value":123145454681232}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66251759,"imageIndex":94},{"imageOffset":65421769,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081846,"name":"Chrome_ChildIOThread","threadState":{"r13":{"value":123145463082408},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140682715105320},"rsi":{"value":0},"r8":{"value":1},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553143837056},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":0},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703277624966},"rbp":{"value":123145463082384},"rsp":{"value":123145463082312},"r12":{"value":140682716494176},"rcx":{"value":123145463082312},"flavor":"x86_THREAD_STATE","rdi":{"value":23}},"frames":[{"imageOffset":44678,"symbol":"kevent64","symbolLocation":10,"imageIndex":155},{"imageOffset":66456106,"imageIndex":94},{"imageOffset":66455847,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081847,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":344160024395776},"r9":{"value":344160024395776},"r15":{"value":344160024395776},"rbx":{"value":123145471483024},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145471482352},"rsp":{"value":123145471482248},"r12":{"value":0},"rcx":{"value":123145471482248},"flavor":"x86_THREAD_STATE","rdi":{"value":123145471483024}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66251759,"imageIndex":94},{"imageOffset":65421769,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081848,"name":"VizCompositorThread","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":300179559284736},"r9":{"value":300179559284736},"r15":{"value":300179559284736},"rbx":{"value":123145479883920},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145479883248},"rsp":{"value":123145479883144},"r12":{"value":0},"rcx":{"value":123145479883144},"flavor":"x86_THREAD_STATE","rdi":{"value":123145479883920}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66251759,"imageIndex":94},{"imageOffset":65421769,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081865,"name":"NetworkService","threadState":{"r13":{"value":123145488285096},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140682711398600},"rsi":{"value":0},"r8":{"value":2},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":105553166725504},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":0},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703277624966},"rbp":{"value":123145488285072},"rsp":{"value":123145488285000},"r12":{"value":140682715209216},"rcx":{"value":123145488285000},"flavor":"x86_THREAD_STATE","rdi":{"value":24}},"frames":[{"imageOffset":44678,"symbol":"kevent64","symbolLocation":10,"imageIndex":155},{"imageOffset":66456106,"imageIndex":94},{"imageOffset":66455847,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081866,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":329866373234688},"r9":{"value":329866373234688},"r15":{"value":329866373234688},"rbx":{"value":123145496685712},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145496685040},"rsp":{"value":123145496684936},"r12":{"value":0},"rcx":{"value":123145496684936},"flavor":"x86_THREAD_STATE","rdi":{"value":123145496685712}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66251759,"imageIndex":94},{"imageOffset":65421769,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081867,"name":"ThreadPoolSingleThreadForegroundBlocking0","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":318871256956928},"r9":{"value":318871256956928},"r15":{"value":318871256956928},"rbx":{"value":123145505086880},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145505086208},"rsp":{"value":123145505086104},"r12":{"value":0},"rcx":{"value":123145505086104},"flavor":"x86_THREAD_STATE","rdi":{"value":123145505086880}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66009023,"imageIndex":94},{"imageOffset":66011756,"imageIndex":94},{"imageOffset":66010829,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3081886,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":401334629040128},"r9":{"value":401334629040128},"r15":{"value":401334629040128},"rbx":{"value":123145515633808},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145515633136},"rsp":{"value":123145515633032},"r12":{"value":0},"rcx":{"value":123145515633032},"flavor":"x86_THREAD_STATE","rdi":{"value":123145515633808}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66251759,"imageIndex":94},{"imageOffset":65421769,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3082061,"name":"com.apple.NSEventThread","threadState":{"r13":{"value":21592279046},"rax":{"value":268451845},"rflags":{"value":518},"cpu":{"value":0},"r14":{"value":2},"rsi":{"value":21592279046},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":8589934592},"r10":{"value":600346233667584},"r9":{"value":600346233667584},"r15":{"value":600346233667584},"rbx":{"value":123145534566496},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":518},"rip":{"value":140703277585358},"rbp":{"value":123145534566336},"rsp":{"value":123145534566232},"r12":{"value":4294967295},"rcx":{"value":123145534566232},"flavor":"x86_THREAD_STATE","rdi":{"value":123145534566496}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":506853,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":143,"imageIndex":161},{"imageOffset":501333,"symbol":"__CFRunLoopRun","symbolLocation":1371,"imageIndex":161},{"imageOffset":498482,"symbol":"CFRunLoopRunSpecific","symbolLocation":557,"imageIndex":161},{"imageOffset":1686204,"symbol":"_NSEventThread","symbolLocation":122,"imageIndex":163},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3082105,"name":"MemoryInfra","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":653122791800832},"r9":{"value":653122791800832},"r15":{"value":653122791800832},"rbx":{"value":123145551371408},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145551370736},"rsp":{"value":123145551370632},"r12":{"value":0},"rcx":{"value":123145551370632},"flavor":"x86_THREAD_STATE","rdi":{"value":123145551371408}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66251759,"imageIndex":94},{"imageOffset":65421769,"imageIndex":94},{"imageOffset":65919580,"imageIndex":94},{"imageOffset":65624472,"imageIndex":94},{"imageOffset":66059960,"imageIndex":94},{"imageOffset":66060362,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":3082106,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":749879815045120},"r9":{"value":749879815045120},"r15":{"value":749879815045120},"rbx":{"value":123145559772576},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145559771904},"rsp":{"value":123145559771800},"r12":{"value":0},"rcx":{"value":123145559771800},"flavor":"x86_THREAD_STATE","rdi":{"value":123145559772576}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66009023,"imageIndex":94},{"imageOffset":66011034,"imageIndex":94},{"imageOffset":66010637,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":7741290,"name":"QFileInfoGatherer","threadState":{"r13":{"value":14297946131968},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145369063424},"rsi":{"value":14297946131968},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":3328},"r10":{"value":0},"r9":{"value":160},"r15":{"value":3328},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703277596538},"rbp":{"value":123145369063008},"rsp":{"value":123145369062856},"r12":{"value":0},"rcx":{"value":123145369062856},"flavor":"x86_THREAD_STATE","rdi":{"value":105553175742400}},"frames":[{"imageOffset":16250,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":155},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":156},{"imageOffset":2107627,"imageIndex":110},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":110},{"imageOffset":4529677,"symbol":"QFileInfoGatherer::run()","symbolLocation":125,"imageIndex":106},{"imageOffset":2066019,"imageIndex":110},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":7812022,"name":"ThreadPoolForegroundWorker","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":1119539060277248},"r9":{"value":1119539060277248},"r15":{"value":1119539060277248},"rbx":{"value":123145421077920},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703277585358},"rbp":{"value":123145421077248},"rsp":{"value":123145421077144},"r12":{"value":33000},"rcx":{"value":123145421077144},"flavor":"x86_THREAD_STATE","rdi":{"value":123145421077920}},"frames":[{"imageOffset":5070,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":155},{"imageOffset":64648,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":155},{"imageOffset":34064,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":155},{"imageOffset":5821,"symbol":"mach_msg","symbolLocation":19,"imageIndex":155},{"imageOffset":66252326,"imageIndex":94},{"imageOffset":66009023,"imageIndex":94},{"imageOffset":66011756,"imageIndex":94},{"imageOffset":66010733,"imageIndex":94},{"imageOffset":66222344,"imageIndex":94},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":7832743,"name":"QFileInfoGatherer","threadState":{"r13":{"value":3302829851648},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145370136576},"rsi":{"value":3302829851648},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":768},"r10":{"value":0},"r9":{"value":160},"r15":{"value":768},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703277596538},"rbp":{"value":123145370136160},"rsp":{"value":123145370136008},"r12":{"value":0},"rcx":{"value":123145370136008},"flavor":"x86_THREAD_STATE","rdi":{"value":105553176016064}},"frames":[{"imageOffset":16250,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":155},{"imageOffset":26355,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":156},{"imageOffset":2107627,"imageIndex":110},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":110},{"imageOffset":4529677,"symbol":"QFileInfoGatherer::run()","symbolLocation":125,"imageIndex":106},{"imageOffset":2066019,"imageIndex":110},{"imageOffset":24971,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":156},{"imageOffset":6883,"symbol":"thread_start","symbolLocation":15,"imageIndex":156}]},{"id":7833031,"frames":[{"imageOffset":6848,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":0},"rsi":{"value":186223},"r8":{"value":409604},"cr2":{"value":0},"rdx":{"value":123145367465984},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":0},"rbx":{"value":123145367990272},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703277828800},"rbp":{"value":0},"rsp":{"value":123145367990272},"r12":{"value":0},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145367990272}}},{"id":7833864,"frames":[{"imageOffset":6848,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":156}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":1},"rsi":{"value":252939},"r8":{"value":409604},"cr2":{"value":0},"rdx":{"value":123145370148864},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":123145370671992},"rbx":{"value":123145370673152},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703277828800},"rbp":{"value":0},"rsp":{"value":123145370673152},"r12":{"value":5128197},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145370673152}}}],
"usedImages" : [
{
"source" : "P",
"arch" : "x86_64",
"base" : 5194805248,
"size" : 16384,
"uuid" : "96914cd4-8568-3716-9e34-bcc6d235e224",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/lapack_lite.cpython-311-darwin.so",
"name" : "lapack_lite.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5427863552,
"size" : 98304,
"uuid" : "0bfec6a4-0a3a-3ccd-a25f-9006f60836ba",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5444460544,
"size" : 131072,
"uuid" : "cb96435a-7c7c-317b-aa2c-19ca3beb0970",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5428801536,
"size" : 212992,
"uuid" : "bc13a84d-3899-3db7-8fcc-6698ab361076",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5200429056,
"size" : 98304,
"uuid" : "085c9405-136d-32f4-b7a0-f726a8c5e682",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5240287232,
"size" : 32768,
"uuid" : "6174b67e-2ac1-346b-ad21-d6fb32060963",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
"name" : "_nw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5233233920,
"size" : 16384,
"uuid" : "ce412e76-387f-357d-b7be-b4654bc453d4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so",
"name" : "_dssp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5234892800,
"size" : 16384,
"uuid" : "67c108ea-3b9a-3731-a794-8ca4049035a3",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-311-darwin.so",
"name" : "_sw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5237702656,
"size" : 16384,
"uuid" : "0cf88116-cc85-32ed-b523-593e852fc25f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5195198464,
"size" : 180224,
"uuid" : "8a2cb9a5-a78b-3570-85dd-db8d007fb652",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5194354688,
"size" : 32768,
"uuid" : "3b76dfeb-802d-3ce8-9151-7ec4ff5a682b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5194190848,
"size" : 81920,
"uuid" : "77e92d9f-9046-3830-af22-fd3e061a9760",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 6027378688,
"size" : 442368,
"uuid" : "4257e585-b0ce-343b-bd19-71ac7ffa0713",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5954871296,
"size" : 409600,
"uuid" : "bb420b20-0ce5-3d6c-95cc-09f401a8b63d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5201661952,
"size" : 393216,
"uuid" : "b22060fb-029b-3fba-a262-ad22a0e78c84",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/segment\/_segment.cpython-311-darwin.so",
"name" : "_segment.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5535432704,
"size" : 32768,
"uuid" : "4cafbf15-47c9-3e93-abf0-7f8f01ea6b1d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5189832704,
"size" : 32768,
"uuid" : "20c4af3a-4b84-3cc8-aa82-b08768c1116d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5189935104,
"size" : 65536,
"uuid" : "5cfe15a5-c7e4-36db-be9c-4d4ef3728796",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5184593920,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 94208,
"uuid" : "0a3b7d42-83e1-31fb-a8cb-541d3deeca1c",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61123.100.169"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5181169664,
"size" : 16384,
"uuid" : "136e83be-523c-3e0a-8ee9-ac44338f577c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 5181083648,
"size" : 53248,
"uuid" : "79fb585f-7491-3991-afe3-baa6d8f159df",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5141729280,
"size" : 16384,
"uuid" : "5c82e5f4-7664-3325-95c1-a2286b531838",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5140910080,
"size" : 32768,
"uuid" : "9c20a913-80f2-3790-82d6-f5f257f40a80",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5142323200,
"size" : 573440,
"uuid" : "607364f1-42f7-3d00-a4e8-3d3930973dee",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5141647360,
"size" : 32768,
"uuid" : "4555e0fe-0041-3b9d-a56b-13b66a6d3148",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5143277568,
"size" : 425984,
"uuid" : "c1d9cbcb-157d-3efb-b925-47d5b0aa636a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5141565440,
"size" : 32768,
"uuid" : "ea65a913-faaa-3a98-9152-8f5cb46cefe2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5141106688,
"size" : 32768,
"uuid" : "5e0161ca-ceec-363f-8779-78f703b77183",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5141188608,
"size" : 245760,
"uuid" : "b664e91f-c9aa-3e4d-a93a-9600b9e093d2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5140717568,
"size" : 32768,
"uuid" : "1e969447-e94a-32a1-9213-d22fc6f91912",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5140635648,
"size" : 32768,
"uuid" : "986394df-4589-3b8d-9ea9-f6f1e56f1b5e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5141798912,
"size" : 458752,
"uuid" : "9ae20c42-01c8-33fe-9659-3452efdaa18b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5140828160,
"size" : 32768,
"uuid" : "db9371e6-1f91-3bb7-b809-279e47d8ddf6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5133840384,
"size" : 49152,
"uuid" : "6fa7f1f6-f0d8-3c40-bcba-c9efedd60ea4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5121789952,
"size" : 32768,
"uuid" : "79131285-478a-3db6-a280-53666b87c3a7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5133627392,
"size" : 98304,
"uuid" : "7927d573-a75a-3483-b846-b34afb8cd28d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5113360384,
"size" : 32768,
"uuid" : "ada3a7a8-1026-3b4a-9d87-6fce8df2fb33",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5113135104,
"size" : 32768,
"uuid" : "1936789e-b9b0-3e1f-8cfa-fc88f0803ad5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5133266944,
"size" : 180224,
"uuid" : "d98e7117-18dd-37b7-9c74-472d0c79861a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5121462272,
"size" : 163840,
"uuid" : "84c28449-2886-395e-a902-73f67264df32",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5113036800,
"size" : 32768,
"uuid" : "2e49f12e-2bd1-36ff-a452-6af1ad840335",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5112315904,
"size" : 49152,
"uuid" : "f299aa93-affb-3200-ba08-9d3d8c6da134",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5113262080,
"size" : 32768,
"uuid" : "4e4bafab-4516-3b13-9719-e3642c80791e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5134000128,
"size" : 704512,
"uuid" : "a4ad5b64-7236-3230-857c-bc3c882c9b69",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5121232896,
"size" : 163840,
"uuid" : "aef34ee9-c864-3f86-9c23-674b05a8f622",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5112070144,
"size" : 98304,
"uuid" : "b95403ec-ebee-307e-a234-a98fa49425bf",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5121896448,
"size" : 671744,
"uuid" : "3ff53eba-e1c5-3012-8833-8f274ca1f445",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5112479744,
"size" : 131072,
"uuid" : "ff530dfd-f9a0-3647-8791-e3141a233416",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5111357440,
"size" : 16384,
"uuid" : "ab1ede05-8390-3ffd-92d7-7ce53a7c9be2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5109014528,
"size" : 16384,
"uuid" : "6471263b-077e-389e-bb71-0c6152f93a06",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5111480320,
"size" : 393216,
"uuid" : "d2838c07-3bac-3b2d-87c3-72aded2e5165",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5110308864,
"size" : 655360,
"uuid" : "eb2b7b54-aae9-33c5-ad3a-429b3a4f72ad",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5113483264,
"size" : 737280,
"uuid" : "52bfa0ae-b59c-3f4e-8240-645c1a930cc1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5114302464,
"size" : 557056,
"uuid" : "d015dfe5-7214-33d8-bf58-350dd32c4521",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.0.dylib",
"name" : "libopenjp2.2.5.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5108834304,
"size" : 131072,
"uuid" : "181a76df-c680-311c-aaa6-6eeeb8854129",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.dylib",
"name" : "libz.1.3.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5111078912,
"size" : 163840,
"uuid" : "51065206-aff2-32dd-93c5-d6d05a6f5e35",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib",
"name" : "libxcb.1.1.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5112725504,
"size" : 245760,
"uuid" : "2f03407e-0f9b-3146-b009-33e0f793869a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5106352128,
"size" : 16384,
"uuid" : "adabaf7c-bc6a-3eab-8fbc-f3d8fdd20c3e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5105958912,
"size" : 278528,
"uuid" : "60db207e-61fc-34bd-b11c-5cfa79eea3b7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5097406464,
"size" : 16384,
"uuid" : "05968841-a7ae-3fcd-965c-8cc9e98e0a41",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5102858240,
"size" : 32768,
"uuid" : "114c9a33-5736-3368-9202-8fbccd595edd",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5109129216,
"size" : 1114112,
"uuid" : "aff872ee-6078-3910-b105-cc0517b99c83",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5106475008,
"size" : 147456,
"uuid" : "d1f6d0b1-d05a-3cc7-8c15-0d72176e5bcb",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5097340928,
"size" : 16384,
"uuid" : "143bfd0a-fbaa-3849-bbaa-9d3b2d44c38f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5102563328,
"size" : 180224,
"uuid" : "51e1e878-bbc5-3f02-b917-b1ff75adab8e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5095485440,
"size" : 16384,
"uuid" : "5b50f1d9-e783-35c3-af9f-373c9c20ca6c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5095272448,
"size" : 98304,
"uuid" : "6e842008-31d0-3b82-a669-7322afd7ff18",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5096734720,
"size" : 393216,
"uuid" : "107f31ab-cd24-32ef-bf63-11caf2bb17d4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5102993408,
"size" : 671744,
"uuid" : "99f6a3dc-9f85-3a3d-8ee5-4560b2308969",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5095555072,
"size" : 49152,
"uuid" : "23a4fb23-e7ad-3f20-b2e5-b03ac4a6886e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5094506496,
"size" : 114688,
"uuid" : "60d71170-122f-3388-8946-9dc82b508714",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5093867520,
"size" : 360448,
"uuid" : "618ec769-18aa-37be-b55b-7e22658dae7d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5094797312,
"size" : 212992,
"uuid" : "a9496e39-cd88-3974-aafc-ff947534f4db",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5086818304,
"size" : 16384,
"uuid" : "d0ba4ed3-33c4-30c0-9fb8-0fcdd129cd4a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5097484288,
"size" : 1196032,
"uuid" : "146fbaf9-e571-37ea-8b91-518dd53f8d03",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5086662656,
"size" : 32768,
"uuid" : "88a748b9-8a16-3bfc-ba85-a21a2e8d0dfe",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5087117312,
"size" : 16384,
"uuid" : "3edbdaff-bca7-3dde-878a-d25fb44e9018",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5087035392,
"size" : 32768,
"uuid" : "3b8f35f8-8f33-355e-a956-2cc5d0d96c32",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4922576896,
"size" : 16384,
"uuid" : "1ab11cdf-f450-33b0-9055-0ec26fb654ee",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4920164352,
"size" : 16384,
"uuid" : "e81a2322-9755-3b07-b226-bdaa988e1f3b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4918247424,
"size" : 16384,
"uuid" : "dc7e074f-ad98-3934-aa21-85389e14162e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5086920704,
"size" : 49152,
"uuid" : "434ffdf5-a119-33d1-8f61-ae50457a3d17",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4903383040,
"size" : 65536,
"uuid" : "f5077020-095f-37b5-9841-9db3e15f3401",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5087232000,
"size" : 180224,
"uuid" : "6f66f2fb-3370-3449-8c56-f3e0001309af",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4922314752,
"size" : 163840,
"uuid" : "a600179c-3d08-331c-ba58-5134eada0b7e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 5074284544,
"CFBundleShortVersionString" : "5.5.17",
"CFBundleIdentifier" : "com.apple.AMDRadeonX6000GLDriver",
"size" : 1376256,
"uuid" : "98868005-28ff-379b-a627-cc627258dea3",
"path" : "\/System\/Library\/Extensions\/AMDRadeonX6000GLDriver.bundle\/Contents\/MacOS\/AMDRadeonX6000GLDriver",
"name" : "AMDRadeonX6000GLDriver",
"CFBundleVersion" : "5.0.5"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4922654720,
"size" : 655360,
"uuid" : "4bf756eb-ff87-3f7f-8c98-b1eda6463b81",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4857581568,
"size" : 147456,
"uuid" : "5b8ebe3c-b7e4-3d4b-950c-fbb3a6870826",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4920242176,
"size" : 196608,
"uuid" : "87e0d2fb-a12c-38ca-b451-0bf21cc5d3ed",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4917100544,
"size" : 458752,
"uuid" : "398c4f3b-e41e-3c01-8003-a594b5bc7701",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4485214208,
"size" : 32768,
"uuid" : "4125538e-4145-3504-8c4c-eecafa43ae17",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4492001280,
"size" : 65536,
"uuid" : "31527197-e015-3323-9b1e-d89a57f4122b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4571082752,
"size" : 81920,
"uuid" : "be9b28e7-5ac2-3b5d-9c1e-9cb326210166",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4900900864,
"size" : 311296,
"uuid" : "4a13ff65-e0b7-341f-ac9d-bb5df92cb106",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5245636608,
"size" : 165052416,
"uuid" : "4aa1de3e-464c-340c-ab61-bcd39bfc7658",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4926988288,
"size" : 4079616,
"uuid" : "e586fcd9-f4b6-3610-a075-167f962121c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4899889152,
"size" : 425984,
"uuid" : "3081c960-3da0-328b-8a70-a5cc2464636c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4916346880,
"size" : 557056,
"uuid" : "b83cee7d-31bd-3264-99ce-afa3bf6692c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487553024,
"size" : 212992,
"uuid" : "795a00a0-138d-33c2-b582-5fd530b0c678",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4932509696,
"size" : 4079616,
"uuid" : "b140050b-a3f5-340b-a110-d1c01906c469",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4901408768,
"size" : 1261568,
"uuid" : "f402edbd-ac12-3e53-a2f4-e1d6932ab755",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4918345728,
"size" : 491520,
"uuid" : "92f7a6de-79af-3b2f-8548-97e6556c3d1a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4571262976,
"size" : 81920,
"uuid" : "5b40aee8-76af-3deb-9c1b-90894adda30a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4853125120,
"size" : 1474560,
"uuid" : "86bbe80d-1a98-3bdb-b3c7-eee8ee9c9f07",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4903600128,
"size" : 2801664,
"uuid" : "babd94e3-ec19-3110-ab5b-11c39432d8c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4909957120,
"size" : 4964352,
"uuid" : "f36760e5-d1e7-3a93-ae8c-1c3e55e3fc35",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4890632192,
"size" : 6979584,
"uuid" : "49d915f7-1c6d-3bbd-b96f-064260e7d998",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4491280384,
"size" : 573440,
"uuid" : "b80d4b57-c2b5-329a-8f0b-fa6745f22ad0",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4487954432,
"size" : 98304,
"uuid" : "17a32d1b-857d-3264-9bf6-9192cca7beb2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4849405952,
"size" : 1589248,
"uuid" : "2be8100b-aa99-3117-95ff-0200ddc4032f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4841869312,
"size" : 5259264,
"uuid" : "35b47b1c-6952-3d39-a5e7-711f3ca228f2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4483715072,
"size" : 147456,
"uuid" : "2c719e3d-a419-3692-a578-2819f3d838f6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4463378432,
"size" : 16384,
"uuid" : "f68fca4b-5b9f-3986-91bf-f334ea86eead",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4488151040,
"size" : 589824,
"uuid" : "c0f2136b-dde6-3728-92f0-57d0f47098f1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484448256,
"size" : 32768,
"uuid" : "c5fdf54a-82e5-35a0-a1f6-b53c802ba054",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484300800,
"size" : 65536,
"uuid" : "aa144ed2-2766-3453-8242-ba1c7a85b8be",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484169728,
"size" : 49152,
"uuid" : "295d00ff-9980-30db-b256-d03255300066",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484022272,
"size" : 65536,
"uuid" : "ef897ac7-3b50-30b3-90dd-67ed8d383413",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484673536,
"size" : 344064,
"uuid" : "28fb5ca7-d743-37b2-ada0-3e2f189421cc",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4463296512,
"size" : 32768,
"uuid" : "350317ec-40ef-3786-8235-1f4a252e2bdf",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4462153728,
"size" : 32768,
"uuid" : "a5bc2ee2-086d-3ee9-8f96-3f9a55d29897",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4566069248,
"size" : 2260992,
"uuid" : "8365300e-480c-3c4d-9ca6-539638c6704e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4473790464,
"size" : 196608,
"uuid" : "af2bead6-eea9-3b15-bc85-d48eae168228",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4463632384,
"size" : 131072,
"uuid" : "6edf4fc8-aedc-3490-8d35-cea9228e02b1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4485357568,
"size" : 475136,
"uuid" : "540847df-9827-358d-99cf-88c3e8d2b851",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4462571520,
"size" : 81920,
"uuid" : "98efd1f3-eca0-387f-bcde-bddf9588e58b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4463067136,
"size" : 131072,
"uuid" : "b1cb953c-267f-3883-a539-bdcd0ec454a9",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4463452160,
"size" : 81920,
"uuid" : "14c5a954-5a10-341d-930e-646b8183499c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4462391296,
"size" : 81920,
"uuid" : "639e25c9-cea2-3d74-b5c2-849e946bcc2a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4459520000,
"size" : 16384,
"uuid" : "b62770cf-9a42-3e1b-8e2d-bc816ac0e837",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4461957120,
"size" : 114688,
"uuid" : "6078491a-679a-38fb-99f9-93212e36864a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4465221632,
"size" : 4931584,
"uuid" : "2b00c859-0a9f-3caf-b744-6c2225d80f2b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4571467776,
"size" : 64094208,
"uuid" : "9d768904-ac4b-327d-8126-cec11a08b966",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4492156928,
"size" : 6565888,
"uuid" : "ae37c55e-f850-3cf7-86e4-bbd86809bc1d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4462710784,
"size" : 319488,
"uuid" : "a1783d23-d187-3d92-ade7-2a80619e7485",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4462252032,
"size" : 69632,
"uuid" : "6d59656e-a224-3642-80b9-ca07ca06e7c1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4459438080,
"size" : 32768,
"uuid" : "c77a08cd-9e75-30d9-84cc-a69845c1c3ec",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458958848,
"size" : 16384,
"uuid" : "968f7d44-5fa3-31d9-8b22-92eb2206cc84",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4463910912,
"size" : 1130496,
"uuid" : "248383d9-36c6-3353-bbce-8dcc6b4ce8f7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458876928,
"size" : 32768,
"uuid" : "fab56287-4c23-300d-9887-cd45a5f7d3a7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4459036672,
"size" : 16384,
"uuid" : "463cc059-41c7-330e-b20b-05cb0fdcad11",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458299392,
"size" : 16384,
"uuid" : "57e65ad6-c0ea-38d8-a056-41ad88aa2610",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458201088,
"size" : 32768,
"uuid" : "3cd6c3fb-9fe0-3b14-a169-570d6d72caba",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458795008,
"size" : 32768,
"uuid" : "e99b9ab9-9e03-3a38-ad6e-92f4c11a0ccd",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458713088,
"size" : 32768,
"uuid" : "4857358d-b2e1-3822-aebb-06a8878b427d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458647552,
"size" : 16384,
"uuid" : "e0374123-b7f9-38e5-b11f-58349af543a6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458582016,
"size" : 16384,
"uuid" : "f286872f-bf81-34a6-87be-7d1797853da1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4459159552,
"size" : 196608,
"uuid" : "c1616b8c-e517-3843-9946-07100812a3fa",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458516480,
"size" : 16384,
"uuid" : "5264b516-4f77-3211-bbb5-8720cd62f60a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4458418176,
"size" : 32768,
"uuid" : "2e40ac09-b4c6-3504-a3e2-a3913e730146",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4455882752,
"size" : 16384,
"uuid" : "aacd4a54-a0d7-3ca3-946c-75e1b46b8800",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4455735296,
"size" : 65536,
"uuid" : "bce0a7e8-5fe0-3b22-a86a-efce56d39c06",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4455989248,
"size" : 49152,
"uuid" : "e72184af-f88a-3d22-985d-ba7ae840d7bb",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4474163200,
"CFBundleShortVersionString" : "3.11.2, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 4079616,
"uuid" : "24670b23-d78a-3eaa-bca8-22faf877f190",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.2"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4453363712,
"CFBundleShortVersionString" : "1.7.1",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "194a3167-3db5-3029-8d22-1d742b826bb9",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.7.1.0"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703277580288,
"size" : 241656,
"uuid" : "50c9fa25-ed67-32a5-88f4-92de497b0ec1",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703277821952,
"size" : 49144,
"uuid" : "5a006814-83f4-3c80-ab1f-528cdd08c0ff",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703276429312,
"size" : 557048,
"uuid" : "6d02e870-f215-36ed-bf7d-435f66996bfe",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703278022656,
"size" : 45048,
"uuid" : "56a3704c-42f6-3fb2-b45c-5371848c9400",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703571939328,
"size" : 24536,
"uuid" : "2c4eda02-ddfa-38cd-9149-bf38fb19668d",
"path" : "\/usr\/lib\/libffi.dylib",
"name" : "libffi.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 140703278243840,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 4829165,
"uuid" : "2780e326-c5fd-3a12-b906-b9449288005c",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2420"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703456882688,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 2732028,
"uuid" : "5d06c99c-ac78-3bc4-8908-45a394e8180b",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703335534592,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 21159926,
"uuid" : "4905ef83-f061-3c82-bc30-70a4def63eee",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2487.50.124"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703274102784,
"size" : 592736,
"uuid" : "899f1e34-b624-3162-8003-04daa6829461",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
}
],
"sharedCache" : {
"base" : 140703273406464,
"size" : 25769803776,
"uuid" : "59b61d18-2d12-3a06-a536-f0b08e953ca2"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.3G resident=0K(0%) swapped_out_or_unallocated=1.3G(100%)\nWritable regions: Total=10.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=10.3G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 492K 71 \nCG raster data 8K 1 \nColorSync 252K 30 \nCoreAnimation 2916K 209 \nCoreGraphics 24K 4 \nCoreUI image data 5184K 61 \nFoundation 32K 2 \nKernel Alloc Once 8K 1 \nMALLOC 9.0G 2251 \nMALLOC guard page 64K 16 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 104K 5 \nOpenGL GLSL 384K 4 \nSTACK GUARD 84K 21 \nStack 138.7M 22 \nStack Guard 56.0M 1 \nVM_ALLOCATE 1.0G 783 \nVM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 57.8M 848 \n__DATA_CONST 63.4M 467 \n__DATA_DIRTY 1853K 237 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 212.6M 157 \n__OBJC_RO 71.7M 1 \n__OBJC_RW 2196K 2 \n__TEXT 1.1G 854 \ndyld private memory 420K 6 \nmapped file 264.9M 80 \nshared memory 3516K 29 \n=========== ======= ======= \nTOTAL 12.1G 6173 \nTOTAL, minus reserved VM space 11.9G 6173 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "616b2338cfa78a248bf28f17d2615b5b6f44c640",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6297d96be2c9387df974efa4",
"factorPackIds" : {
},
"deploymentId" : 240000025
},
{
"rolloutId" : "645c2d2f9e69a025b0a37e29",
"factorPackIds" : {
},
"deploymentId" : 240000003
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P388_J125_003_volume_map.mrc
Opened cryosparc_P388_J125_003_volume_map.mrc as #1, grid size 180,180,180,
pixel 2.85, shown at level 0.612, step 1, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P388_J181_002_volume_map.mrc
Opened cryosparc_P388_J181_002_volume_map.mrc as #2, grid size 180,180,180,
pixel 2.85, shown at level 0.614, step 1, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P388_J182_002_volume_map.mrc
Opened cryosparc_P388_J182_002_volume_map.mrc as #3, grid size 180,180,180,
pixel 2.85, shown at level 0.611, step 1, values float32
> hide #!2 models
> hide #!3 models
> volume #1 level 0.5077
> volume #1 level 0.4
> volume #1 level 0.45
> volume #2 level 0.45
> volume #1 level 0.4
> volume #1 level 0.45
> volume #2 level 0.4
> volume #3 level 0.4
> volume #3 level 0.45
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P310_J405_007_volume_map.mrc
Opened cryosparc_P310_J405_007_volume_map.mrc as #4, grid size 640,640,640,
pixel 0.95, shown at level 0.114, step 4, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P310_J408_007_volume_map.mrc
Opened cryosparc_P310_J408_007_volume_map.mrc as #5, grid size 640,640,640,
pixel 0.95, shown at level 0.111, step 4, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P310_J413_009_volume_map.mrc
Opened cryosparc_P310_J413_009_volume_map.mrc as #6, grid size 640,640,640,
pixel 0.95, shown at level 0.114, step 4, values float32
> hide #!3 models
> hide #!5 models
> hide #!6 models
> volume #4 step 1
> volume #4 level 0.1
> volume #4 level 0.12
> volume #5 step 1
> volume #5 level 0.12
> volume #4 level 0.1
> volume #4 level 0.12
> volume #5 level 0.1
> volume #6 step 1
> volume #6 level 0.12
> show #!6 models
> hide #!6 models
> show #!5 models
> hide #!5 models
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J408_008_volume_map.mrc
Opened cryosparc_P17_J408_008_volume_map.mrc as #7, grid size 294,294,294,
pixel 1.9, shown at level 0.354, step 2, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J368_007_volume_map.mrc
Opened cryosparc_P17_J368_007_volume_map.mrc as #8, grid size 294,294,294,
pixel 1.9, shown at level 0.37, step 2, values float32
> hide #!8 models
> hide #!7 models
> show #!8 models
> volume #8 step 1
> volume #8 level 0.4191
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J408_008_volume_map.mrc
Opened cryosparc_P17_J408_008_volume_map.mrc as #9, grid size 294,294,294,
pixel 1.9, shown at level 0.354, step 2, values float32
> close #9
> show #!7 models
> hide #!7 models
> volume #8 level 0.4
> volume #7 step 1
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J392_002_volume_map.mrc
Opened cryosparc_P17_J392_002_volume_map.mrc as #9, grid size 294,294,294,
pixel 1.9, shown at level 0.207, step 2, values float32
> hide #!7 models
> volume #9 step 1
> volume #9 level 0.3788
> volume #9 level 0.4816
> hide #!9 models
> show #!9 models
> show #!8 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!8 models
> show #!8 models
> hide #!9 models
> hide #!8 models
> show #!9 models
> hide #!9 models
> show #!9 models
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J411_002_volume_map.mrc
Opened cryosparc_P17_J411_002_volume_map.mrc as #10, grid size 294,294,294,
pixel 1.9, shown at level 0.214, step 2, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J412_002_volume_map.mrc
Opened cryosparc_P17_J412_002_volume_map.mrc as #11, grid size 294,294,294,
pixel 1.9, shown at level 0.289, step 2, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J413_002_volume_map.mrc
Opened cryosparc_P17_J413_002_volume_map.mrc as #12, grid size 294,294,294,
pixel 1.9, shown at level 0.214, step 2, values float32
> volume #10 step 1
> volume #11 step 1
> volume #12 step 1
> volume #10 level 0.5137
> volume #10 level 0.4337
> volume #12 level 0.4965
> volume #12 level 0.4561
> hide #!9 models
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J401_007_volume_map.mrc
Opened cryosparc_P17_J401_007_volume_map.mrc as #13, grid size 294,294,294,
pixel 1.9, shown at level 0.357, step 2, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J403_008_volume_map.mrc
Opened cryosparc_P17_J403_008_volume_map.mrc as #14, grid size 294,294,294,
pixel 1.9, shown at level 0.357, step 2, values float32
> show #!8 models
> hide #!8 models
> volume #13 step 1
> volume #14 step 1
> volume #13 level 0.35
> volume #13 level 0.3
> volume #14 level 0.3
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J399_007_volume_map.mrc
Opened cryosparc_P17_J399_007_volume_map.mrc as #15, grid size 294,294,294,
pixel 1.9, shown at level 0.357, step 2, values float32
> hide #!14 models
> volume #15 step 1
> volume #15 level 0.2842
> volume #15 level 0.2923
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P388_J217_006_volume_map.mrc
Opened cryosparc_P388_J217_006_volume_map.mrc as #16, grid size 294,294,294,
pixel 1.9, shown at level 0.368, step 2, values float32
> hide #!15 models
> volume #16 step 1
> volume #16 level 0.3641
> show #!8 models
> volume #16 level 0.4
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> open /Users/cvetkom/Downloads/cs_P17_J486_009_volume_map.mrc
Opened cs_P17_J486_009_volume_map.mrc as #17, grid size 588,588,588, pixel
0.85, shown at level 0.169, step 4, values float32
> open /Users/cvetkom/Downloads/cryosparc_P17_J486_005_volume_map.mrc
Opened cryosparc_P17_J486_005_volume_map.mrc as #18, grid size 588,588,588,
pixel 0.85, shown at level 0.169, step 4, values float32
> hide #!8 models
> hide #!16 models
> volume #18 step 1
> volume #17 step 1
> volume #17 level 0.1385
> volume #17 level 0.1646
> volume #17 level 0.1556
> ui tool show "Map Coordinates"
> save /Users/cvetkom/Downloads/cs_P17_J486_009_volume_map.mrc models #17
> hide #!17 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> close #18
> open /Users/cvetkom/Downloads/cryosparc_P17_J491_011_volume_map.mrc
Opened cryosparc_P17_J491_011_volume_map.mrc as #18, grid size 588,588,588,
pixel 0.85, shown at level 0.166, step 4, values float32
> open /Users/cvetkom/Downloads/cryosparc_P17_J492_012_volume_map.mrc
Opened cryosparc_P17_J492_012_volume_map.mrc as #19, grid size 588,588,588,
pixel 0.85, shown at level 0.166, step 4, values float32
> volume #18 step 1
> volume #18 level 0.139
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/initial_model_job502.mrc
Opened initial_model_job502.mrc as #20, grid size 588,588,588, pixel 0.95,
shown at level 0.00493, step 4, values float32
> hide #!18 models
> volume #20 step 1
> volume #20 level 0.005154
> volume #20 level 0.00473
> close #20
> show #!8 models
> open /Users/cvetkom/Downloads/cryosparc_P17_J429_map_sharp.mrc
Opened cryosparc_P17_J429_map_sharp.mrc as #20, grid size 294,294,294, pixel
1.9, shown at level 0.000158, step 2, values float32
> hide #!8 models
> volume #20 step 1
> volume #20 level 0.123
> volume #20 level 0.1118
> hide #!20 models
> show #!18 models
> show #!19 models
> hide #!18 models
> volume #19 step 1
> volume #19 level 0.1482
> show #!18 models
> hide #!18 models
> volume #18 level 0.14
> volume #19 level 0.14
> volume #18 level 0.135
> volume #18 level 0.13
> volume #19 level 0.13
> open /Users/cvetkom/Downloads/cryosparc_P17_J489_013_volume_map.mrc
Opened cryosparc_P17_J489_013_volume_map.mrc as #21, grid size 588,588,588,
pixel 0.85, shown at level 0.165, step 4, values float32
> hide #!21 models
> show #!18 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!18 models
> show #!18 models
> hide #!19 models
> show #!19 models
> hide #!18 models
> show #!18 models
> hide #!19 models
> show #!19 models
> hide #!18 models
> hide #!19 models
> show #!21 models
> volume #21 step 1
> volume #21 level 0.14
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!21 models
> show #!20 models
> hide #!20 models
> show #!20 models
> hide #!20 models
> show #!20 models
> hide #!20 models
> show #!21 models
> hide #!21 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!20 models
> hide #!20 models
> show #!20 models
> close #18-21
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J491_011_volume_map.mrc
Opened cryosparc_P17_J491_011_volume_map.mrc as #18, grid size 588,588,588,
pixel 0.85, shown at level 0.166, step 4, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J489_013_volume_map.mrc
Opened cryosparc_P17_J489_013_volume_map.mrc as #19, grid size 588,588,588,
pixel 0.85, shown at level 0.165, step 4, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J492_012_volume_map.mrc
Opened cryosparc_P17_J492_012_volume_map.mrc as #20, grid size 588,588,588,
pixel 0.85, shown at level 0.166, step 4, values float32
> volume #18 step 2
> volume #18 step 1
> volume #19 step 1
> volume #20 step 1
> volume #18 level 0.13
> volume #19 level 0.13
> volume #20 level 0.13
> hide #!18 models
> show #!19 models
> hide #!19 models
> show #!20 models
> hide #!20 models
> show #!18 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!18 models
> show #!18 models
> hide #!19 models
> show #!19 models
> hide #!18 models
> show #!18 models
> hide #!19 models
> show #!19 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!19 models
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/postprocess_masked_job511.mrc
Opened postprocess_masked_job511.mrc as #21, grid size 588,588,588, pixel
0.95, shown at level 0.00498, step 4, values float32
> hide #!18 models
> show #!18 models
> hide #!18 models
> hide #!21 models
> show #!18 models
> select add #21
2 models selected
> show #!21 models
> ui mousemode right "rotate selected models"
> view matrix models
> #21,-0.55287,0.83087,-0.063182,166.89,-0.5876,-0.33499,0.73655,276.93,0.59081,0.44434,0.67343,-162.06
> ui mousemode right "translate selected models"
> view matrix models
> #21,-0.55287,0.83087,-0.063182,188.59,-0.5876,-0.33499,0.73655,291.89,0.59081,0.44434,0.67343,-218.35
> view matrix models
> #21,-0.55287,0.83087,-0.063182,185.39,-0.5876,-0.33499,0.73655,288.19,0.59081,0.44434,0.67343,-212.32
> ui mousemode right zoom
> select subtract #21
Nothing selected
> ui tool show "Fit in Map"
> fitmap #21 inMap #18
Fit map postprocess_masked_job511.mrc in map
cryosparc_P17_J491_011_volume_map.mrc using 31756 points
correlation = 0.8968, correlation about mean = 0.2434, overlap = 42.45
steps = 180, shift = 7, angle = 10.3 degrees
Position of postprocess_masked_job511.mrc (#21) relative to
cryosparc_P17_J491_011_volume_map.mrc (#18) coordinates:
Matrix rotation and translation
-0.51920954 0.84749667 0.11032156 127.58974848
-0.54899809 -0.42966309 0.71693147 315.34926138
0.65499813 0.31167134 0.68835923 -196.84626713
Axis -0.26099112 -0.35077655 -0.89935502
Axis point 178.92637046 159.99291122 0.00000000
Rotation angle (degrees) 129.06906427
Shift along axis 33.11776092
> hide #!18 models
> volume #21 step 1
> volume #21 level 0.005527
> hide #!21 models
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job505_run_class001.mrc
Opened Ref3D_job505_run_class001.mrc as #22, grid size 588,588,588, pixel
0.95, shown at level 0.005, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job507_run_class001.mrc
Opened Ref3D_job507_run_class001.mrc as #23, grid size 588,588,588, pixel
0.95, shown at level 0.00501, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job505_run_class001.mrc
Opened Ref3D_job505_run_class001.mrc as #24, grid size 588,588,588, pixel
0.95, shown at level 0.005, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job507_run_class001.mrc
Opened Ref3D_job507_run_class001.mrc as #25, grid size 588,588,588, pixel
0.95, shown at level 0.00501, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job508_run_class001.mrc
Opened Ref3D_job508_run_class001.mrc as #26, grid size 588,588,588, pixel
0.95, shown at level 0.00502, step 4, values float32
> hide #!26 models
> hide #!25 models
> hide #!24 models
> hide #!23 models
> hide #!22 models
> show #!22 models
> hide #!22 models
> close #22-26
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job505_run_class001.mrc
Opened Ref3D_job505_run_class001.mrc as #22, grid size 588,588,588, pixel
0.95, shown at level 0.005, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job506_run_class001.mrc
Opened Ref3D_job506_run_class001.mrc as #23, grid size 588,588,588, pixel
0.95, shown at level 0.00502, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job507_run_class001.mrc
Opened Ref3D_job507_run_class001.mrc as #24, grid size 588,588,588, pixel
0.95, shown at level 0.00501, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job508_run_class001.mrc
Opened Ref3D_job508_run_class001.mrc as #25, grid size 588,588,588, pixel
0.95, shown at level 0.00502, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job509_run_class001.mrc
Opened Ref3D_job509_run_class001.mrc as #26, grid size 588,588,588, pixel
0.95, shown at level 0.005, step 4, values float32
> hide #!23 models
> hide #!24 models
> hide #!25 models
> hide #!26 models
> volume #22 step 1
> volume #22 level 0.004523
> volume #22 level 0.004
> volume #23 step 1
> volume #23 level 0.004
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/postprocess_masked_job514.mrc
Opened postprocess_masked_job514.mrc as #27, grid size 588,588,588, pixel
0.95, shown at level 0.00499, step 4, values float32
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/postprocess_masked_job515.mrc
Opened postprocess_masked_job515.mrc as #28, grid size 588,588,588, pixel
0.95, shown at level 0.00499, step 4, values float32
> hide #!27 models
> hide #!28 models
> hide #!22 models
> hide #!23 models
> show #!24 models
> show #!22 models
> hide #!22 models
> volume #24 step 1
> volume #24 level 0.004649
> show #!25 models
> hide #!24 models
> show #!24 models
> hide #!24 models
> show #!26 models
> hide #!25 models
> hide #!26 models
> show #!22 models
> hide #!22 models
> show #!23 models
> hide #!23 models
> show #!24 models
> show #!25 models
> volume #25 step 1
> volume #24 level 0.0045
> volume #24 level 0.0046
> hide #!24 models
> volume #25 level 0.0046
> show #!24 models
> hide #!25 models
> show #!25 models
> hide #!25 models
> show #!25 models
> hide #!25 models
> hide #!24 models
> show #!27 models
> show #!21 models
> hide #!21 models
> volume #27 step 1
> volume #27 level 0.00489
> volume #28 step 1
> show #!27 models
> hide #!28 models
> show #!28 models
> hide #!27 models
> hide #!28 models
> show #!23 models
> volume #23 level 0.0035
> volume #23 level 0.0045
> ui tool show "Segment Map"
Segmenting Ref3D_job506_run_class001.mrc, density threshold 0.004500
Only showing 60 of 67 regions.
Showing 60 of 67 region surfaces
277 watershed regions, grouped to 67 regions
Showing Ref3D_job506_run_class001.seg - 67 regions, 60 surfaces
> select #29.26
1 model selected
> select add #29.13
2 models selected
> select add #29.6
3 models selected
> select add #29.1
4 models selected
> select add #29.38
5 models selected
Grouped 5 regions
> select add #29.11
2 models selected
> select add #29.31
3 models selected
Grouped 3 regions
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
Only showing 60 of 61 regions.
Showing 60 of 61 region surfaces
Only showing 60 of 61 regions.
Showing 60 of 61 region surfaces
Opened Ref3D_job506_run_class001_imasked as #30, grid size 588,588,588, pixel
0.95, shown at step 1, values float32
> hide #!23 models
> hide #!29 models
> show #!29 models
> hide #!30 models
> show #!30 models
> hide #!29 models
> show #!29 models
> hide #!30 models
Only showing 60 of 61 regions.
Showing 60 of 61 region surfaces
> show #!30 models
> hide #!29 models
> show #!29 models
> hide #!30 models
> show #!30 models
> hide #!30 models
> show #!30 models
> hide #!30 models
> hide #!29 models
> select add #29
61 models selected
> select subtract #29
Nothing selected
> show #!30 models
> ui tool show "Map Eraser"
> volume erase #30 center 322.28,330.54,256.92 radius 31.628
> hide #!30 models
> show #!30 models
> save
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/Ref3D_job506_run_class001_NCP.mrc
> models #30
> volume #30 level 0.004
> volume #30 level 0.0045
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J288_006_volume_map.mrc
Opened cryosparc_P17_J288_006_volume_map.mrc as #31, grid size 294,294,294,
pixel 1.9, shown at level 0.258, step 2, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J288_006_volume_map_sharp.mrc
Opened cryosparc_P17_J288_006_volume_map_sharp.mrc as #32, grid size
294,294,294, pixel 1.9, shown at level 0.251, step 2, values float32
> volume #32 step 1
> volume #32 level 0.5717
> volume #31 step 1
> volume #31 level 0.6543
> open 4C93 fromDatabase pdb format mmcif
Summary of feedback from opening 4C93 fetched from pdb
---
note | Fetching compressed mmCIF 4c93 from
http://files.rcsb.org/download/4c93.cif
4c93 title:
Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Pol
alpha. [more info...]
Chain information for 4c93 #33
---
Chain | Description | UniProt
A B C | DNA POLYMERASE ALPHA-BINDING PROTEIN | CTF4_YEAST 471-927
D E | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A | DPOA_YEAST 137-149
> select add #33
9593 atoms, 9682 bonds, 4 pseudobonds, 1331 residues, 2 models selected
> hide (#!33 & sel) target a
> cartoon (#!33 & sel)
> select subtract #33
Nothing selected
> select add #33
9593 atoms, 9682 bonds, 4 pseudobonds, 1331 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models #33,1,0,0,277.71,0,1,0,277.7,0,0,1,412.4
> ui mousemode right "rotate selected models"
> view matrix models
> #33,0.85071,0.51833,-0.087371,264.2,-0.5256,0.83678,-0.15343,265.2,-0.0064157,0.17644,0.98429,409.11
> ui mousemode right "translate selected models"
> view matrix models
> #33,0.85071,0.51833,-0.087371,206.06,-0.5256,0.83678,-0.15343,295.57,-0.0064157,0.17644,0.98429,358
> ui mousemode right "rotate selected models"
> view matrix models
> #33,0.85087,0.50579,-0.1421,203.77,-0.52472,0.80474,-0.2776,290.42,-0.026051,0.31077,0.95013,354.26
> view matrix models
> #33,0.74237,0.64892,-0.16668,199.01,-0.66761,0.73743,-0.10249,297.15,0.056405,0.18736,0.98067,358.62
> view matrix models
> #33,0.61879,0.74677,-0.24378,192.29,-0.78542,0.59391,-0.17432,294.16,0.014612,0.29934,0.95404,355.21
> view matrix models
> #33,0.9983,-0.034334,-0.047129,217.9,0.018839,0.95483,-0.29655,295.6,0.055182,0.29515,0.95386,355.87
> view matrix models
> #33,0.9358,0.25827,-0.23996,204.12,-0.34616,0.80203,-0.48675,283.69,0.066739,0.53856,0.83994,347.46
> view matrix models
> #33,0.4441,-0.059162,-0.89402,171.67,-0.18738,0.96962,-0.15725,298.59,0.87616,0.23736,0.41953,344.85
> view matrix models
> #33,0.35501,0.67532,-0.64646,171.15,-0.35267,0.73716,0.57639,332.55,0.86579,0.023365,0.49987,351.35
> ui mousemode right "translate selected models"
> view matrix models
> #33,0.35501,0.67532,-0.64646,241,-0.35267,0.73716,0.57639,296.24,0.86579,0.023365,0.49987,410.46
> fitmap #33 inMap #31
Fit molecule 4c93 (#33) to map cryosparc_P17_J288_006_volume_map.mrc (#31)
using 9593 atoms
average map value = 0.5941, steps = 164
shifted from previous position = 8.43
rotated from previous position = 36.7 degrees
atoms outside contour = 5817, contour level = 0.65427
Position of 4c93 (#33) relative to cryosparc_P17_J288_006_volume_map.mrc (#31)
coordinates:
Matrix rotation and translation
-0.11641260 0.77432829 -0.62198377 234.06062084
-0.72447465 0.36217880 0.58648359 303.04623599
0.67940017 0.51888555 0.51881904 403.24027766
Axis -0.03403562 -0.65524703 -0.75464753
Axis point 89.28765412 -151.08833550 0.00000000
Rotation angle (degrees) 96.75980732
Shift along axis -510.84082774
> fitmap #33 inMap #31
Fit molecule 4c93 (#33) to map cryosparc_P17_J288_006_volume_map.mrc (#31)
using 9593 atoms
average map value = 0.5941, steps = 40
shifted from previous position = 0.00237
rotated from previous position = 0.00559 degrees
atoms outside contour = 5819, contour level = 0.65427
Position of 4c93 (#33) relative to cryosparc_P17_J288_006_volume_map.mrc (#31)
coordinates:
Matrix rotation and translation
-0.11649075 0.77431865 -0.62198114 234.06168000
-0.72442922 0.36216631 0.58654742 303.05097408
0.67943522 0.51890866 0.51875003 403.23724883
Axis -0.03405645 -0.65526960 -0.75462700
Axis point 89.27779010 -151.08286692 0.00000000
Rotation angle (degrees) 96.76441303
Shift along axis -510.84511620
> open 6SKL fromDatabase pdb format mmcif
6skl title:
Cryo-EM structure of the CMG Fork Protection Complex at a replication fork -
Conformation 1 [more info...]
Chain information for 6skl #34
---
Chain | Description | UniProt
2 | DNA replication licensing factor MCM2 | MCM2_YEAST 1-868
3 | DNA replication licensing factor MCM3 | MCM3_YEAST 1-971
4 | DNA replication licensing factor MCM4 | MCM4_YEAST 1-933
5 | Minichromosome maintenance protein 5 | MCM5_YEAST 1-775
6 | DNA replication licensing factor MCM6 | MCM6_YEAST 1-1017
7 | DNA replication licensing factor MCM7 | MCM7_YEAST 1-845
A | DNA replication complex GINS protein PSF1 | PSF1_YEAST 1-208
B | DNA replication complex GINS protein PSF2 | PSF2_YEAST 1-213
C | DNA replication complex GINS protein PSF3 | PSF3_YEAST 1-194
D | DNA replication complex GINS protein SLD5 | SLD5_YEAST 1-294
E | Cell division control protein 45 | CDC45_YEAST 1-650
F G H | DNA polymerase alpha-binding protein | CTF4_YEAST 1-927
I | DNA fork, leading-strand template |
J | DNA fork, lagging-strand template |
X | Topoisomerase 1-associated factor 1 | TOF1_YEAST 1-1238
Y | Chromosome segregation in meiosis protein 3 | CSM3_YEAST 1-317
Non-standard residues in 6skl #34
---
ANP — phosphoaminophosphonic acid-adenylate ester
MG — magnesium ion
ZN — zinc ion
> select subtract #33
Nothing selected
> select add #34
118220 atoms, 119405 bonds, 130 pseudobonds, 7321 residues, 4 models selected
> hide (#!34 & sel) target a
> cartoon (#!34 & sel)
> view matrix models #34,1,0,0,-105.11,0,1,0,63.093,0,0,1,60.805
> ui mousemode right "rotate selected models"
> view matrix models
> #34,0.89661,0.16888,-0.40936,-42.927,-0.024986,0.94224,0.33399,18.768,0.44212,-0.28923,0.84904,55.571
> view matrix models
> #34,0.18469,0.42907,0.88419,-184.99,-0.91736,-0.24753,0.31174,429.58,0.35262,-0.86869,0.34789,275.52
> view matrix models
> #34,-0.74581,-0.65341,0.12973,345.25,-0.31799,0.17808,-0.93122,453.04,0.58536,-0.73576,-0.34059,328.08
> view matrix models
> #34,-0.74688,-0.65706,0.10221,351.14,-0.29136,0.1852,-0.93852,447.68,0.59773,-0.73074,-0.32976,322.69
> view matrix models
> #34,-0.79277,-0.59486,-0.13289,390.85,-0.15343,0.40576,-0.90101,370.97,0.58989,-0.6939,-0.41295,332.21
> view matrix models
> #34,-0.80975,-0.58676,0.0025381,368.19,-0.2818,0.38509,-0.8788,396.52,0.51467,-0.71233,-0.47718,362.38
> volume #31 level 0.5196
> volume #31 flipNormals
Missing "flipNormals" keyword's argument
> volume flip #31
Opened cryosparc_P17_J288_006_volume_map.mrc z flip as #35, grid size
294,294,294, pixel 1.9, shown at step 1, values float32
> select subtract #34
Nothing selected
> select add #35
2 models selected
> view matrix models
> #35,0.78895,-0.57985,-0.20332,272.36,0.063773,-0.25184,0.96567,82.546,-0.61114,-0.77483,-0.16171,684.21
> view matrix models
> #35,0.28797,-0.87982,-0.37814,542.26,-0.92038,-0.36335,0.14448,602.17,-0.26451,0.30642,-0.91441,478.11
> view matrix models
> #35,0.19939,-0.94065,-0.27463,557.88,-0.84145,-0.30798,0.44396,488.1,-0.50219,0.14257,-0.85292,575.32
> view matrix models
> #35,0.056907,-0.98144,-0.18311,586.32,-0.81292,-0.15202,0.56218,406.67,-0.57958,0.11686,-0.80649,592.58
> view matrix models
> #35,-0.4142,-0.82661,-0.38098,727.63,-0.85036,0.50069,-0.16185,421.02,0.32454,0.25694,-0.91031,323.5
> view matrix models
> #35,-0.05329,-0.9466,-0.31798,642.33,-0.99846,0.055466,0.0022138,544.59,0.015542,0.31761,-0.94809,404.07
> view matrix models
> #35,-0.12565,-0.99206,-0.005759,595.9,-0.98907,0.12572,-0.077001,542.65,0.077114,-0.003979,-0.99701,488.13
> view matrix models
> #35,-0.028832,-0.99711,0.070342,550.41,-0.98983,0.038289,0.13704,512.53,-0.13933,-0.065675,-0.98807,564.4
> ui mousemode right "translate selected models"
> view matrix models
> #35,-0.028832,-0.99711,0.070342,558.82,-0.98983,0.038289,0.13704,502.05,-0.13933,-0.065675,-0.98807,609.85
> select subtract #35
Nothing selected
> fitmap #33 inMap #35
Fit molecule 4c93 (#33) to map cryosparc_P17_J288_006_volume_map.mrc z flip
(#35) using 9593 atoms
average map value = 0.748, steps = 156
shifted from previous position = 23.9
rotated from previous position = 52.9 degrees
atoms outside contour = 2729, contour level = 0.51963
Position of 4c93 (#33) relative to cryosparc_P17_J288_006_volume_map.mrc z
flip (#35) coordinates:
Matrix rotation and translation
0.31609082 -0.94869655 0.00783922 290.47366164
-0.57784462 -0.18596222 0.79467833 322.70855084
-0.75245079 -0.25572037 -0.60698014 144.58037287
Axis -0.77884069 0.56373337 0.27497613
Axis point 0.00000000 302.79412564 42.56571290
Rotation angle (degrees) 137.59748776
Shift along axis -4.55497724
> volume #35 color #ffffb280
> volume #35 color #ffffb29a
> ui tool show Matchmaker
QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x600001698de0, name="DELL U2415") screenTo: QScreen(0x0) wdgScreen:
QScreen(0x6000016ad580, name="Built-in Retina Display") orgWdgScreen
QScreen(0x6000016ad580, name="Built-in Retina Display")
QDockWidget failed to find relevant screen info. screenFrom:
QScreen(0x600001698de0, name="DELL U2415") screenTo: QScreen(0x0) wdgScreen:
QScreen(0x600001698de0, name="DELL U2415") orgWdgScreen
QScreen(0x6000016ad580, name="Built-in Retina Display")
> matchmaker #33/A to #34/G pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6skl, chain G (#34) with 4c93, chain A (#33), sequence alignment
score = 2250.7
RMSD between 395 pruned atom pairs is 0.975 angstroms; (across all 421 pairs:
1.137)
> select add #33
9593 atoms, 9682 bonds, 4 pseudobonds, 1331 residues, 2 models selected
> select add #34
127813 atoms, 129087 bonds, 134 pseudobonds, 8652 residues, 6 models selected
> view matrix models
> #33,0.20694,0.33166,-0.92042,219.01,-0.50314,0.84292,0.19061,241.4,0.83906,0.42366,0.3413,390.93,#34,-0.80975,-0.58676,0.0025381,554.75,-0.2818,0.38509,-0.8788,387.59,0.51467,-0.71233,-0.47718,400.46
> view matrix models
> #33,0.20694,0.33166,-0.92042,219.86,-0.50314,0.84292,0.19061,243.18,0.83906,0.42366,0.3413,387.91,#34,-0.80975,-0.58676,0.0025381,555.6,-0.2818,0.38509,-0.8788,389.37,0.51467,-0.71233,-0.47718,397.44
> select subtract #34
9593 atoms, 9682 bonds, 4 pseudobonds, 1331 residues, 2 models selected
> select subtract #33
Nothing selected
> fitmap #34 inMap #35
Fit molecule 6skl (#34) to map cryosparc_P17_J288_006_volume_map.mrc z flip
(#35) using 118220 atoms
average map value = 0.6269, steps = 156
shifted from previous position = 29.5
rotated from previous position = 20.7 degrees
atoms outside contour = 51602, contour level = 0.51963
Position of 6skl (#34) relative to cryosparc_P17_J288_006_volume_map.mrc z
flip (#35) coordinates:
Matrix rotation and translation
0.46209162 -0.10482145 0.88061558 50.05829992
0.51912918 0.83705154 -0.17277039 61.05331656
-0.71901059 0.53698899 0.44121038 233.04243695
Axis 0.38201772 0.86097564 0.33583240
Axis point 167.96409560 0.00000000 110.80343384
Rotation angle (degrees) 68.27348026
Shift along axis 149.95177710
> matchmaker #33/A to #34/G pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6skl, chain G (#34) with 4c93, chain A (#33), sequence alignment
score = 2250.7
RMSD between 395 pruned atom pairs is 0.975 angstroms; (across all 421 pairs:
1.137)
> ui mousemode right zoom
> hide #!35 models
> open "/Users/cvetkom/Downloads/ranked_0 (1).pdb"
Chain information for ranked_0 (1).pdb #36
---
Chain | Description
A | No description available
B C D | No description available
> matchmaker #36/B to #34/H pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6skl, chain H (#34) with ranked_0 (1).pdb, chain B (#36), sequence
alignment score = 2258.6
RMSD between 415 pruned atom pairs is 0.607 angstroms; (across all 425 pairs:
0.788)
> show #!35 models
> select #36/B
7269 atoms, 7356 bonds, 457 residues, 1 model selected
> select clear
> select #36/A
277 atoms, 276 bonds, 17 residues, 1 model selected
> color sel red
> select clear
> show #!32 models
> hide #!32 models
> show #!32 models
> hide #!32 models
> open 8B9D fromDatabase pdb format mmcif
files.rcsb.org failed to respond
> open 8B9D fromDatabase pdb format mmcif
files.rcsb.org failed to respond
> open 8B9D fromDatabase pdb format mmcif
Summary of feedback from opening 8B9D fetched from pdb
---
warnings | Atom H1 is not in the residue template for MET /C:1
Atom H1 is not in the residue template for MET /D:1
Atom H1 is not in the residue template for MET /E:1
Atom H1 is not in the residue template for MET /P:1
note | Fetching compressed mmCIF 8b9d from
http://files.rcsb.org/download/8b9d.cif
8b9d title:
Human replisome bound by Pol α [more info...]
Chain information for 8b9d #37
---
Chain | Description | UniProt
2 | DNA replication licensing factor MCM2 | MCM2_HUMAN 1-904
3 | DNA replication licensing factor MCM3 | MCM3_HUMAN 1-808
4 | DNA replication licensing factor MCM4 | MCM4_HUMAN 1-863
5 | DNA replication licensing factor MCM5 | MCM5_HUMAN 1-734
6 | DNA replication licensing factor MCM6 | MCM6_HUMAN 1-821
7 | DNA replication licensing factor MCM7 | MCM7_HUMAN 1-719
A | DNA polymerase alpha subunit B | DPOA2_HUMAN 1-598
B | DNA polymerase alpha catalytic subunit | DPOLA_HUMAN 1-1462
C | Cell division control protein 45 homolog | CDC45_HUMAN 1-134 135-566
D | DNA replication complex GINS protein PSF1 | PSF1_HUMAN 1-196
E | DNA replication complex GINS protein PSF2 | PSF2_HUMAN 1-185
F | DNA replication complex GINS protein PSF3 | PSF3_HUMAN 1-216
G | DNA replication complex GINS protein SLD5 | SLD5_HUMAN 1-223
H I J | WD repeat and HMG-box DNA-binding protein 1 | WDHD1_HUMAN 1-1129
K | Protein timeless homolog | TIM_HUMAN 1-1208
L | TIMELESS-interacting protein | TIPIN_HUMAN 1-301
M | Leading strand DNA |
N | DNA Molecule |
O | DNA primase small subunit | PRI1_HUMAN 1-420
P | DNA primase large subunit | PRI2_HUMAN 1-509
Q | Claspin | CLSPN_HUMAN 1-1339
Non-standard residues in 8b9d #37
---
ANP — phosphoaminophosphonic acid-adenylate ester
MG — magnesium ion
ZN — zinc ion
> hide #33-37 target a
> cartoon #33-37
> hide #!37 models
> hide #!35 models
> show #!35 models
> save
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J288_006_volume_map_zflip.mrc
> models #35
> hide #36 models
> hide #!35 models
> hide #!34 models
> hide #!33 models
> show #!31 models
> show #!32 models
> hide #!31 models
> show #!31 models
> hide #!31 models
> show #!31 models
> hide #!31 models
> volume #32 level 0.7272
> volume flip #32
Opened cryosparc_P17_J288_006_volume_map_sharp.mrc z flip as #38, grid size
294,294,294, pixel 1.9, shown at step 1, values float32
> volume #32 level 0.7618
> volume #38 level 0.7618
> volume #38 level 0.7272
> save
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J288_006_volume_map_sharp_zflip.mrc
> models #38
> hide #!38 models
> show #!34 models
> select #34/E
9129 atoms, 9213 bonds, 4 pseudobonds, 564 residues, 2 models selected
> hide #!34 models
> select add #34
118220 atoms, 119405 bonds, 130 pseudobonds, 7321 residues, 4 models selected
> select subtract #34
Nothing selected
> show #!31 models
> hide #!31 models
> show #!19 models
> show #!27 models
> hide #!27 models
> hide #!19 models
> open
> /Users/cvetkom/Documents/AlphaFold/yMrc1_H3H4_tetr/yMrc1_H3H4_tetr_ranked_0.pdb
Chain information for yMrc1_H3H4_tetr_ranked_0.pdb #39
---
Chain | Description
A | No description available
B C | No description available
D E | No description available
> select add #39
25142 atoms, 25299 bonds, 1574 residues, 1 model selected
> view sel
> select subtract #39
Nothing selected
> hide #39 models
> show #39 models
> hide #39 target a
> cartoon #39
> ui tool show "Show Sequence Viewer"
> sequence chain #39/A
Alignment identifier is 39/A
> select #39/A:657
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #39/A:657-660
63 atoms, 62 bonds, 4 residues, 1 model selected
> color sel red
> select #39/A:678
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #39/A:678-712
621 atoms, 621 bonds, 35 residues, 1 model selected
> select #39/A:746
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #39/A:746-751
96 atoms, 95 bonds, 6 residues, 1 model selected
> select #39/A:612
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #39/A:612-616
83 atoms, 83 bonds, 5 residues, 1 model selected
> select #39/A:746-747
23 atoms, 22 bonds, 2 residues, 1 model selected
> select #39/A:746-751
96 atoms, 95 bonds, 6 residues, 1 model selected
> select #39/A:657
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #39/A:657-660
63 atoms, 62 bonds, 4 residues, 1 model selected
> open
> /Users/cvetkom/Documents/20240109_CMGC4MCT_Fpl20MN_ATPgS_krios2/mask_job518.mrc
Opened mask_job518.mrc as #40, grid size 588,588,588, pixel 0.95, shown at
level 5e-05, step 4, values float32
> select add #39
25142 atoms, 25299 bonds, 1574 residues, 1 model selected
> select subtract #39
Nothing selected
> hide #39 models
> hide #!40 models
> show #!30 models
> show #!40 models
> hide #!40 models
> show #!40 models
> volume #40 step 1
> volume #40 level 1
> volume #40 color #ffb2b280
> volume #40 level 1
> show #!29 models
> hide #!29 models
> show #!23 models
> hide #!30 models
> hide #!23 models
> hide #!40 models
> show #!30 models
> volume #30 level 0.005
> volume #30 level 0.004
> volume #30 level 0.0045
> volume #30 level 0.005
> show #!40 models
> hide #!40 models
> show #!40 models
> volume #30 level 0.0045
> close #40
> show #39 models
> hide #39 models
> show #!37 models
> hide #!37 models
> close #37
> show #36 models
> hide #36 models
> hide #!30 models
> show #!18 models
> show #!20 models
> hide #!18 models
> show #!19 models
> hide #!20 models
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J492_012_volume_map_sharp.mrc
Opened cryosparc_P17_J492_012_volume_map_sharp.mrc as #37, grid size
588,588,588, pixel 0.85, shown at level 0.161, step 4, values float32
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J491_011_volume_map_sharp.mrc
Opened cryosparc_P17_J491_011_volume_map_sharp.mrc as #40, grid size
588,588,588, pixel 0.85, shown at level 0.17, step 4, values float32
> hide #!19 models
> hide #!37 models
> volume #40 level 0.2312
> volume #40 step 1
> volume #40 level 0.3499
> volume #37 level 0.1763
> volume #37 step 1
> volume #37 level 0.2223
> volume #37 level 0.2
> volume #37 level 0.1885
> volume #37 level 0.1742
> hide #!37 models
> show #!8 models
> open
> /Users/cvetkom/Documents/cryoSPARC/cryosparc_P17_J368_007_volume_map_sharp.mrc
Opened cryosparc_P17_J368_007_volume_map_sharp.mrc as #41, grid size
294,294,294, pixel 1.9, shown at level 0.362, step 2, values float32
> hide #!8 models
> volume #41 step 1
> volume #41 level 0.4564
> hide #!41 models
> show #!35 models
> hide #!35 models
> show #!41 models
> hide #!41 models
> show #!33 models
> hide #!33 models
> show #36 models
> combine #36
> hide #36 models
> show #!41 models
> select add #42
22084 atoms, 22344 bonds, 1388 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #42,-0.66651,-0.41454,0.61961,272.25,-0.074937,-0.78968,-0.60893,371.9,0.74172,-0.45229,0.49526,320.86
> ui mousemode right "rotate selected models"
> view matrix models
> #42,0.88686,0.43938,0.14293,270.28,0.32258,-0.81026,0.4893,369.08,0.3308,-0.38784,-0.86032,324.19
> view matrix models
> #42,0.37114,0.92855,0.0068206,265.93,0.88732,-0.3568,0.29216,367.34,0.27372,-0.10238,-0.95634,322.18
> view matrix models
> #42,-0.31468,0.84864,0.42519,263.78,0.88685,0.10319,0.4504,363.22,0.33835,0.51881,-0.78509,316.9
> view matrix models
> #42,-0.23757,0.91024,0.33914,263.75,0.89188,0.06608,0.44741,363.53,0.38484,0.40877,-0.82753,317.99
> ui mousemode right "translate selected models"
> view matrix models
> #42,-0.23757,0.91024,0.33914,263.29,0.89188,0.06608,0.44741,364.95,0.38484,0.40877,-0.82753,225.17
> ui tool show "Fit in Map"
> fitmap #42 inMap #41
Fit molecule copy of ranked_0 (1).pdb (#42) to map
cryosparc_P17_J368_007_volume_map_sharp.mrc (#41) using 22084 atoms
average map value = 0.6576, steps = 148
shifted from previous position = 10.7
rotated from previous position = 27.8 degrees
atoms outside contour = 5619, contour level = 0.45638
Position of copy of ranked_0 (1).pdb (#42) relative to
cryosparc_P17_J368_007_volume_map_sharp.mrc (#41) coordinates:
Matrix rotation and translation
0.11572590 0.95057234 0.28813146 269.08018829
0.98967501 -0.13504383 0.04802635 358.27183284
0.08456290 0.27959862 -0.95638576 219.12378513
Axis 0.74509125 0.65498843 0.12581411
Axis point 0.00000000 52.42448167 89.73927147
Rotation angle (degrees) 171.06008584
Shift along axis 462.72206245
> select subtract #42
Nothing selected
> color #41 #99bfe584 models
> color #41 #99bfe582 models
> color #41 #99bfe580 models
> volume #41 level 0.5
> volume #41 level 0.55
> save
> /Users/cvetkom/Documents/chimera_sessions/20240502_CMGC4MCT_Fpl20MN_krios_merged_misc.cxs
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-5.5.17
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2022.100.22.0.0 (iBridge: 21.16.4222.0.0,0)
OS Loader Version: 580~1678
Software:
System Software Overview:
System Version: macOS 14.4.1 (23E224)
Kernel Version: Darwin 23.4.0
Time since boot: 11 days, 2 hours, 56 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-019
Option ROM Version: 113-D32206U1-019
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL U2415:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 7MT016923MAL
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 18 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 18 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
