Opened 19 months ago
Closed 19 months ago
#14784 closed defect (can't reproduce)
glDrawBuffer: invalid operation
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Graphics | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-5.15.0-79-generic-x86_64-with-glibc2.31 ChimeraX Version: 1.7 (2023-12-19 08:36:03 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.7 (2023-12-19) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc Opened EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc as #1, grid size 608,608,608, pixel 0.83, shown at level 3.97, step 4, values float32 > volume #1 step 2 > volume #1 level 1.783 > open > /home/chunying/modeling/fromAndrei/2024-01-13-IRES6-tRNA_real_space_refined_000.pdb Chain information for 2024-01-13-IRES6-tRNA_real_space_refined_000.pdb #2 --- Chain | Description A | No description available w | No description available > hide #!1 models > show #!1 models > ui tool show "Fit to Segments" > ui tool show "Fit in Map" > fitmap #2 inMap #1 Fit molecule 2024-01-13-IRES6-tRNA_real_space_refined_000.pdb (#2) to map EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc (#1) using 3368 atoms average map value = 6.336, steps = 192 shifted from previous position = 19 rotated from previous position = 17.1 degrees atoms outside contour = 643, contour level = 1.7832 Position of 2024-01-13-IRES6-tRNA_real_space_refined_000.pdb (#2) relative to EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc (#1) coordinates: Matrix rotation and translation 0.96069099 -0.24076360 -0.13822342 106.45631149 0.25307460 0.96417510 0.07949607 -73.13169321 0.11413182 -0.11135200 0.98720548 -17.25165224 Axis -0.32540161 -0.43027316 0.84200879 Axis point 369.72705304 357.87359908 0.00000000 Rotation angle (degrees) 17.05263119 Shift along axis -17.70049318 > transparency 50 > hide #!2 target m > open > /home/chunying/modeling/fromAndrei/2024-01-13-IRES6-tRNA_real_space_refined_000.pdb Chain information for 2024-01-13-IRES6-tRNA_real_space_refined_000.pdb #3 --- Chain | Description A | No description available w | No description available > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > close #2 > open 6zmw 6zmw title: Structure of a human 48S translational initiation complex [more info...] Chain information for 6zmw #2 --- Chain | Description | UniProt 1 | Eukaryotic translation initiation factor 3 subunit B | EIF3B_HUMAN 1-814 2 | Eukaryotic translation initiation factor 3 subunit I | EIF3I_HUMAN 1-325 3 | Eukaryotic translation initiation factor 3 subunit K | EIF3K_HUMAN 1-218 4 | Eukaryotic translation initiation factor 3 subunit F | EIF3F_HUMAN 1-357 5 | Eukaryotic translation initiation factor 3 subunit L | EIF3L_HUMAN 1-564 6 | Eukaryotic translation initiation factor 3 subunit M | EIF3M_HUMAN 1-374 7 | mRNA | 8 | Eukaryotic translation initiation factor 3 subunit H | EIF3H_HUMAN 1-352 9 | 60S ribosomal protein L41 | RL41_HUMAN 1-25 A | 18S rRNA | B | 40S ribosomal protein S11 | RS11_HUMAN 1-158 C | 40S ribosomal protein S4, X isoform | RS4X_HUMAN 1-263 D | 40S ribosomal protein S9 | RS9_HUMAN 1-194 E | 40S ribosomal protein S23 | RS23_HUMAN 1-143 F | 40S ribosomal protein S30 | RS30_HUMAN 75-133 G | 40S ribosomal protein S7 | RS7_HUMAN 1-194 H | 40S ribosomal protein S27 | RS27_HUMAN 1-84 I | 40S ribosomal protein S13 | RS13_HUMAN 1-151 J | 40S ribosomal protein S15a | RS15A_HUMAN 1-130 K | 40S ribosomal protein S21 | RS21_HUMAN 1-83 L | 40S ribosomal protein S2 | RS2_HUMAN 1-293 M | 40S ribosomal protein S17 | RS17_HUMAN 1-135 N | 40S ribosomal protein SA | RSSA_HUMAN 1-295 O | 40S ribosomal protein S3a | RS3A_HUMAN 1-264 P | 40S ribosomal protein S14 | RS14_HUMAN 1-151 Q | 40S ribosomal protein S26 | RS26_HUMAN 1-115 R | 40S ribosomal protein S8 | RS8_HUMAN 1-208 S | 40S ribosomal protein S6 | RS6_HUMAN 1-249 T | 40S ribosomal protein S24 | RS24_HUMAN 1-133 V | 40S ribosomal protein S5 | RS5_HUMAN 1-204 Y | 40S ribosomal protein S16 | RS16_HUMAN 1-146 Z | 40S ribosomal protein S3 | RS3_HUMAN 1-243 a | 40S ribosomal protein S10 | RS10_HUMAN 1-165 b | 40S ribosomal protein S15 | RS15_HUMAN 1-145 c | Receptor of activated protein C kinase 1 | RACK1_HUMAN 1-317 d | 40S ribosomal protein S19 | RS19_HUMAN 1-145 e | 40S ribosomal protein S25 | RS25_HUMAN 1-125 f | 40S ribosomal protein S18 | RS18_HUMAN 1-152 g | Eukaryotic translation initiation factor 4 gamma 1 | IF4G1_HUMAN 290-1599 h | 40S ribosomal protein S20 | RS20_HUMAN 1-119 i | 40S ribosomal protein S29 | RS29_HUMAN 1-56 j | Eukaryotic initiation factor 4A-I | IF4A1_HUMAN 1-406 k | Ubiquitin-40S ribosomal protein S27a | RS27A_HUMAN 1-156 m | 40S ribosomal protein S12 | RS12_HUMAN 1-132 n | 40S ribosomal protein S28 | RS28_HUMAN 1-69 o | Eukaryotic translation initiation factor 3 subunit G | EIF3G_HUMAN 1-320 p | Eukaryotic translation initiation factor 1 | EIF1_HUMAN 1-113 q | Eukaryotic translation initiation factor 1A, X-chromosomal | IF1AX_HUMAN 1-144 r | Eukaryotic translation initiation factor 2 subunit 1 | IF2A_HUMAN 1-315 s | Eukaryotic translation initiation factor 2 subunit 2 | IF2B_HUMAN 1-333 t | Eukaryotic translation initiation factor 2 subunit 3 | IF2G_HUMAN 1-472 u | Eukaryotic translation initiation factor 3 subunit A | EIF3A_HUMAN 1-1382 v | Eukaryotic translation initiation factor 3 subunit E | EIF3E_HUMAN 1-445 w | Initiator Met-tRNA-i | x | Eukaryotic translation initiation factor 3 subunit D | EIF3D_HUMAN 1-548 y | Eukaryotic translation initiation factor 3 subunit C | EIF3C_HUMAN 1-913 z | Eukaryotic translation initiation factor 3 subunit J | EIF3J_HUMAN 1-258 Non-standard residues in 6zmw #2 --- MG — magnesium ion ZN — zinc ion > hide #!2 models > hide #!1 models > hide #!3 models > show #!2 models > hide #!2 atoms > show #!2 cartoons > show #!1 models > select add #1 2 models selected > ui mousemode right "translate selected models" > view matrix models #1,1,0,0,7.4275,0,1,0,134.77,0,0,1,-7.1047 > undo > select subtract #1 Nothing selected > select add #2 118147 atoms, 123656 bonds, 1743 pseudobonds, 13029 residues, 4 models selected > view matrix models #2,1,0,0,12.753,0,1,0,159.82,0,0,1,-13.32 > ui mousemode right "rotate selected models" > view matrix models > #2,0.82634,-0.39254,-0.40383,271.45,0.19996,0.87484,-0.44122,258.65,0.52648,0.28385,0.8014,-174.73 > view matrix models > #2,0.47871,-0.87771,-0.021378,383.53,0.79349,0.44294,-0.41735,197.76,0.37578,0.18282,0.9085,-137.46 > view matrix models > #2,0.16833,0.78519,0.59594,-121.73,-0.18128,-0.5696,0.80168,383.62,0.96892,-0.24298,0.046459,45.675 > view matrix models > #2,-0.015578,0.88793,0.45972,-59.33,-0.44725,-0.41741,0.79104,421.33,0.89427,-0.19329,0.40363,-45.29 > view matrix models > #2,-0.052134,0.89145,0.4501,-47.5,-0.38843,-0.43333,0.81323,403.02,0.92,-0.13244,0.36886,-58.088 > view matrix models > #2,-0.29879,0.91364,0.27567,63.075,-0.44678,-0.38917,0.80556,410.05,0.84328,0.11753,0.52447,-143.17 > view matrix models > #2,-0.14412,0.98895,0.034629,68.311,-0.43918,-0.095283,0.89333,309.48,0.88676,0.11354,0.44806,-132.96 > ui mousemode right "translate selected models" > view matrix models > #2,-0.14412,0.98895,0.034629,-25.328,-0.43918,-0.095283,0.89333,228.3,0.88676,0.11354,0.44806,-75.732 > view matrix models > #2,-0.14412,0.98895,0.034629,-15.469,-0.43918,-0.095283,0.89333,145,0.88676,0.11354,0.44806,-122.76 > view matrix models > #2,-0.14412,0.98895,0.034629,-13.701,-0.43918,-0.095283,0.89333,141.86,0.88676,0.11354,0.44806,-123.43 > ui mousemode right "rotate selected models" > view matrix models > #2,-0.14051,0.98784,0.066555,-23.26,-0.4541,-0.12403,0.88228,156.28,0.8798,0.093742,0.466,-121.49 > select subtract #2 Nothing selected > select add #2 118147 atoms, 123656 bonds, 1743 pseudobonds, 13029 residues, 4 models selected > ui mousemode right "translate selected models" > view matrix models > #2,-0.14051,0.98784,0.066555,-2.4222,-0.4541,-0.12403,0.88228,167.58,0.8798,0.093742,0.466,-142.45 > ui mousemode right "rotate selected models" > view matrix models > #2,-0.091535,0.99416,0.057209,-14.897,-0.41658,-0.090411,0.90459,142.6,0.90448,0.058969,0.42242,-128.39 > ui mousemode right "translate selected models" > view matrix models > #2,-0.091535,0.99416,0.057209,-11.563,-0.41658,-0.090411,0.90459,149.13,0.90448,0.058969,0.42242,-131.95 > select subtract #2 Nothing selected > ui tool show "Fit in Map" > fitmap #2 inMap #1 Fit molecule 6zmw (#2) to map EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc (#1) using 118147 atoms average map value = 8.138, steps = 340 shifted from previous position = 7.78 rotated from previous position = 16.7 degrees atoms outside contour = 21187, contour level = 1.7832 Position of 6zmw (#2) relative to EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc (#1) coordinates: Matrix rotation and translation -0.09091071 0.97308140 0.21177306 -53.81990818 -0.16986917 -0.22468958 0.95950980 107.74095910 0.98126434 0.05125600 0.18572322 -88.28658590 Axis -0.55036813 -0.46628319 -0.69258567 Axis point 56.37364629 95.58569169 0.00000000 Rotation angle (degrees) 124.39802298 Shift along axis 40.52898857 > select #3/w 1601 atoms, 1783 bonds, 75 residues, 1 model selected > show #!3 models > color #3 #204a87ff > ui mousemode right "translate selected models" > view matrix models #3,1,0,0,1.1549,0,1,0,9.0296,0,0,1,1.2725 > ui mousemode right "rotate selected models" > view matrix models > #3,0.97173,0.21442,0.098828,-62.743,-0.23351,0.93465,0.26814,-7.0541,-0.034873,-0.28364,0.9583,75.183 > ui mousemode right "translate selected models" > view matrix models > #3,0.97173,0.21442,0.098828,-66.499,-0.23351,0.93465,0.26814,-7.9958,-0.034873,-0.28364,0.9583,79.528 > view matrix models > #3,0.97173,0.21442,0.098828,-54.368,-0.23351,0.93465,0.26814,-14.978,-0.034873,-0.28364,0.9583,91.301 > view matrix models > #3,0.97173,0.21442,0.098828,-45.605,-0.23351,0.93465,0.26814,-11.64,-0.034873,-0.28364,0.9583,94.557 > ui mousemode right "rotate selected models" > view matrix models > #3,0.8878,0.010904,-0.4601,181.5,0.031624,0.99591,0.084626,-27.68,0.45914,-0.089681,0.88383,-31.573 > ui mousemode right "translate selected models" > view matrix models > #3,0.8878,0.010904,-0.4601,184.32,0.031624,0.99591,0.084626,-17.697,0.45914,-0.089681,0.88383,-32.187 > ui mousemode right "translate selected models" > view matrix models > #3,0.8878,0.010904,-0.4601,192.21,0.031624,0.99591,0.084626,-18.451,0.45914,-0.089681,0.88383,-39.322 > ui tool show "Fit to Segments" > ui tool show "Fit in Map" > fitmap #3 inMap #1 Fit molecule 2024-01-13-IRES6-tRNA_real_space_refined_000.pdb (#3) to map EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc (#1) using 3368 atoms average map value = 8.352, steps = 224 shifted from previous position = 12.7 rotated from previous position = 27.8 degrees atoms outside contour = 62, contour level = 1.7832 Position of 2024-01-13-IRES6-tRNA_real_space_refined_000.pdb (#3) relative to EMCV40s-608-zcls1258_88k_1xbin_0_r1_2.5A.mrc (#1) coordinates: Matrix rotation and translation 0.99999809 0.00062993 -0.00184907 18.59261650 -0.00062795 0.99999923 0.00107273 18.92703566 0.00184974 -0.00107157 0.99999771 19.71749733 Axis -0.48114830 -0.82995908 -0.28224855 Axis point -6045.71309048 0.00000000 2197.86008060 Rotation angle (degrees) 0.12767275 Shift along axis -30.21970583 > select add #3 3368 atoms, 3755 bonds, 158 residues, 1 model selected > select subtract #3 Nothing selected > hide #!2 models > ui tool show "Show Sequence Viewer" > sequence chain #3/A Alignment identifier is 3/A > select #3/A:519 20 atoms, 21 bonds, 1 residue, 1 model selected > select #3/A 1767 atoms, 1972 bonds, 83 residues, 1 model selected > color sel red > select add #3 3368 atoms, 3755 bonds, 158 residues, 1 model selected > select subtract #3 Nothing selected > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > color #3 dodgerblue > select #3/A:524 20 atoms, 21 bonds, 1 residue, 1 model selected > select #3/A:524 20 atoms, 21 bonds, 1 residue, 1 model selected > select #3/A:519 20 atoms, 21 bonds, 1 residue, 1 model selected > select #3/A 1767 atoms, 1972 bonds, 83 residues, 1 model selected > color sel red > select add #3 3368 atoms, 3755 bonds, 158 residues, 1 model selected > select subtract #3 Nothing selected > color #1 #d3d7cfff models > color #1 #babdb6ff models > color #1 #d3d7cfff models > color #1 #babdb6ff models > transparency 50 > volume #1 step 1 > volume #1 level 1.9 > volume #1 level 2.1 > volume #1 step 2 > volume #1 level 1.633 > surface dust #1 size 8.3 > open /home/chunying/6zmw-FIT.pdb Summary of feedback from opening /home/chunying/6zmw-FIT.pdb --- warnings | Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 4921 messages similar to the above omitted Ignored bad PDB record found on line 104926 TER 104926 GLU u 706 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 600 messages similar to the above omitted Ignored bad PDB record found on line 105532 TER 105532 PHE v 154 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 2025 messages similar to the above omitted Ignored bad PDB record found on line 107563 TER 107563 ILE v 422 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 1599 messages similar to the above omitted Ignored bad PDB record found on line 109168 TER 109168 A w 75 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 324 messages similar to the above omitted Ignored bad PDB record found on line 109498 TER 109498 TYR x 59 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 180 messages similar to the above omitted Ignored bad PDB record found on line 109684 TER 109684 THR x 88 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 2312 messages similar to the above omitted Ignored bad PDB record found on line 112002 TER 112002 PHE x 527 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 897 messages similar to the above omitted Ignored bad PDB record found on line 112905 TER 112905 LYS y 160 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 1921 messages similar to the above omitted Ignored bad PDB record found on line 114832 TER 114832 GLN y 522 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 2637 messages similar to the above omitted Ignored bad PDB record found on line 117475 TER 117475 LEU y 863 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 265 messages similar to the above omitted Ignored bad PDB record found on line 117746 TER 117746 LYS z 96 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 110 messages similar to the above omitted Ignored bad PDB record found on line 117862 TER 117862 THR z 135 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 Duplicate atom serial number found: 99999 405 messages similar to the above omitted Chain information for 6zmw-FIT.pdb #4 --- Chain | Description 1 | No description available 2 | No description available 3 | No description available 4 | No description available 5 | No description available 6 | No description available 7 | No description available 8 | No description available 9 | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available J | No description available K | No description available L | No description available M | No description available N | No description available O | No description available P | No description available Q | No description available R | No description available S | No description available T | No description available V | No description available Y | No description available Z | No description available a | No description available b | No description available c | No description available d | No description available e | No description available f | No description available g | No description available h | No description available i | No description available j | No description available k | No description available m | No description available n | No description available o | No description available p | No description available q | No description available r | No description available s | No description available t | No description available u | No description available v | No description available w | No description available x | No description available y | No description available z | No description available > hide #!4 models > close #4 > volume style mesh > volume style surface > volume style image > volume style mesh > volume style surface > show #!2 models > color #2 lightgreen > select #3/A:519 20 atoms, 21 bonds, 1 residue, 1 model selected > select #3/A 1767 atoms, 1972 bonds, 83 residues, 1 model selected > select add #3 3368 atoms, 3755 bonds, 158 residues, 1 model selected > select subtract #3 Nothing selected > select add #3 3368 atoms, 3755 bonds, 158 residues, 1 model selected > show sel surfaces > select subtract #3 2 models selected > select #3/A:519 20 atoms, 21 bonds, 1 residue, 1 model selected > select #3/A 1767 atoms, 1972 bonds, 83 residues, 1 model selected > show sel atoms > show sel cartoons > hide sel surfaces > show sel surfaces > select add #3 3368 atoms, 3755 bonds, 158 residues, 2 models selected > select subtract #3 2 models selected > color #2 #e09fc0ff > color #2 #fce94fff > color #2 #bfb140ff > color #2 #c9c07aff > select #2/7 336 atoms, 363 bonds, 28 residues, 1 model selected > hide #!2 models > select add #2 118147 atoms, 123656 bonds, 1743 pseudobonds, 13029 residues, 4 models selected > select subtract #2 Nothing selected > select add #2 118147 atoms, 123656 bonds, 1743 pseudobonds, 13029 residues, 4 models selected > show #!2 models > select #2/7 336 atoms, 363 bonds, 28 residues, 1 model selected > color #2 #5c3566ff > color #2 #e9b96eff > select #2/7 336 atoms, 363 bonds, 28 residues, 1 model selected > select #2/7 336 atoms, 363 bonds, 28 residues, 1 model selected > select add #2 118147 atoms, 123656 bonds, 1743 pseudobonds, 13029 residues, 4 models selected > select subtract #2 Nothing selected > volume #1 change image level -0.6227,0 level 3.962,0.8 level 35.98,1 > volume #1 level 1.312 > volume #1 level 1.7 > set bgColor white > color #1 #555753ff models > color #1 #888a85ff models > transparency 50 > hide #!2 models > show #!2 models > hide #!2 models > volume #1 level 1.8 > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > save > /home/chunying/Figure_40S_IRES/40STM_IRES6-tRNA_real_apce_refined_000.jpg > width 1124 height 803 supersample 3 > volume #1 level 2.056 > lighting simple > hide #!3 models > lighting soft > lighting simple > lighting full > lighting simple > show #!3 models > lighting shadows true > lighting shadows false > lighting flat [Repeated 1 time(s)] > lighting full > lighting soft > lighting simple > lighting shadows true > lighting flat > lighting simple > lighting soft > lighting simple > set bgColor black > set bgColor white > set bgColor black > lighting simple > lighting soft > lighting shadows true intensity 0.5 > set bgColor white > lighting simple > lighting soft > lighting simple > lighting full [Repeated 1 time(s)] > lighting simple > show #!2 models > select #2/7 336 atoms, 363 bonds, 28 residues, 1 model selected > hide sel atoms > show sel surfaces > select add #2 118147 atoms, 123656 bonds, 1743 pseudobonds, 13029 residues, 5 models selected > select subtract #2 1 model selected > hide #!1 models > hide #!3 models > show #!1 models > show #!3 models > select #3/A:564 23 atoms, 25 bonds, 1 residue, 1 model selected > select #3/A:529-564 764 atoms, 849 bonds, 36 residues, 1 model selected > ui tool show "Map Eraser" > select add #3 3368 atoms, 3755 bonds, 158 residues, 2 models selected > select subtract #3 2 models selected An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command "graphics restart" after changing the settings that caused the error. GLError( err = 1282, description = b'invalid operation', baseOperation = glDrawBuffer, cArguments = (GL_BACK,) ) Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/core/updateloop.py", line 84, in draw_new_frame view.draw(check_for_changes = False) File "/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/graphics/view.py", line 188, in draw self._draw_scene(camera, drawings) File "/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/graphics/view.py", line 270, in _draw_scene silhouette.finish_silhouette_drawing(r) File "/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/graphics/opengl.py", line 1825, in finish_silhouette_drawing fb = r.pop_framebuffer() ^^^^^^^^^^^^^^^^^^^ File "/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/graphics/opengl.py", line 764, in pop_framebuffer fb.activate() File "/usr/lib/ucsf-chimerax/lib/python3.11/site- packages/chimerax/graphics/opengl.py", line 2313, in activate GL.glDrawBuffer(self._draw_buffer) File "src/errorchecker.pyx", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1282, description = b'invalid operation', baseOperation = glDrawBuffer, cArguments = (GL_BACK,) ) OpenGL version: 3.3.0 NVIDIA 510.108.03 OpenGL renderer: NVIDIA RTX A6000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.2 Locale: en_US.UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: xcb XDG_SESSION_TYPE=x11 DESKTOP_SESSION=ubuntu XDG_SESSION_DESKTOP=ubuntu XDG_CURRENT_DESKTOP=ubuntu:GNOME DISPLAY=:2 Manufacturer: Supermicro Model: X11DAi-N OS: Ubuntu 20.04 Focal Fossa Architecture: 64bit ELF Virtual Machine: none CPU: 112 Intel(R) Xeon(R) Gold 6258R CPU @ 2.70GHz Cache Size: 39424 KB Memory: total used free shared buff/cache available Mem: 187Gi 50Gi 113Gi 146Mi 23Gi 135Gi Swap: 31Gi 15Gi 16Gi Graphics: 04:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41) DeviceName: Aspeed Video 2500 Subsystem: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.13 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.1 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.49.1 ChimeraX-AtomicLibrary: 12.1.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.22.3 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.7 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-LinuxSupport: 1.0.1 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.13 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.3 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.2 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.0 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 distro: 1.7.0 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.0 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.5.1 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.3 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.8 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 23.2 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 Pillow: 10.0.1 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.7 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.5 sphinxcontrib-htmlhelp: 2.0.4 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.6 sphinxcontrib-serializinghtml: 1.1.9 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.3 urllib3: 2.1.0 wcwidth: 0.2.12 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 19 months ago
Component: | Unassigned → Graphics |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → glDrawBuffer: invalid operation |
comment:2 by , 19 months ago
Resolution: | → can't reproduce |
---|---|
Status: | assigned → closed |
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Drawing silhouettes, no back buffer. Probable graphics driver bug.