Bundle ChimeraX-NMRSTAR has no module

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-12.7.2-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open /Users/cottiers/Desktop/Pry1-040424.cxs

Log from Tue Apr 2 17:20:03 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open /Users/cottiers/Desktop/pry1b.cxs format session

Log from Thu Mar 7 17:37:50 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "/Volumes/CottierS/My
> Documents/2024-0301/prys/bioinformatic/Pry1-consurf.cxs"

Log from Thu Mar 7 16:41:11 2024UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 5jys format mmcif fromDatabase pdb

5jys title:  
Pry1 CAP domain [more info...]  
  
Chain information for 5jys #1  
---  
Chain | Description | UniProt  
A | Protein PRY1 | PRY1_YEAST  
  
Non-standard residues in 5jys #1  
---  
MG — magnesium ion  
  

> open /Users/stribnyj/Downloads/5JYSA_with_Conservation_Scores.cif

mmCIF parsing error: PDBx/mmCIF styling lost near line 2302  

> ui tool show "AlphaFold Error Plot"

Must choose path to predicted aligned file  

> set bgColor white

> close

> open P47032 fromDatabase alphafold

Summary of feedback from opening P47032 fetched from alphafold  
---  
notes | Fetching AlphaFold database settings from
https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json  
Fetching compressed AlphaFold P47032 from
https://alphafold.ebi.ac.uk/files/AF-P47032-F1-model_v4.cif  
  
Chain information for AlphaFold P47032 #1  
---  
Chain | Description | UniProt  
A | Protein PRY1 | PRY1_YEAST  
  

> save /Users/stribnyj/Desktop/PryAF.pdb relModel #1

> color PuOr-10

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword  

> color byatom PuOr-10

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> select add #1

2155 atoms, 2201 bonds, 299 residues, 1 model selected  

> color byatom PuOr-10

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  
Alignment identifier is 1/A  

> open /Users/stribnyj/Desktop/PRY1.pdb

Summary of feedback from opening /Users/stribnyj/Desktop/PRY1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
SEQRES 1 A 299 MET LYS LEU SER LYS LEU SER ILE LEU THR SER ALA LEU  
  
Ignored bad PDB record found on line 2  
SEQRES 2 A 299 ALA THR SER ALA LEU ALA ALA PRO ALA VAL VAL THR VAL  
  
Ignored bad PDB record found on line 3  
SEQRES 3 A 299 THR GLU HIS ALA HIS GLU ALA ALA VAL VAL THR VAL GLN  
  
Ignored bad PDB record found on line 4  
SEQRES 4 A 299 GLY VAL VAL TYR VAL GLU ASN GLY GLN THR ARG THR THR  
  
Ignored bad PDB record found on line 5  
SEQRES 5 A 299 TYR GLU THR LEU ALA PRO ALA SER THR ALA THR PRO THR  
  
2195 messages similar to the above omitted  
  

> open /Users/stribnyj/PryAF.pdb

Chain information for PryAF.pdb #2  
---  
Chain | Description  
A | No description available  
  

> hide #1 models

> show #1 models

> close #1

> close

> open /Users/stribnyj/PryAF.pdb

Chain information for PryAF.pdb #1  
---  
Chain | Description  
A | No description available  
  

> rainbow

> color byattribute bfactor

2155 atoms, 299 residues, atom bfactor range 1 to 9  

> ui tool show "Color Actions"

> ui tool show "Basic Actions"

> color byattribute bfactor palette cyanmaroon range -1.4,1.4

2155 atoms, 299 residues, atom bfactor range 1 to 9  

> color byattribute bfactor palette cyanmaroon range

Missing "range" keyword's argument  

> color byattribute bfactor

2155 atoms, 299 residues, atom bfactor range 1 to 9  

> show surfaces

> color fromatoms atoms

> hide surfaces

> surface

> color fromatoms

> color byattribute bfactor palette cyanmaroon range -1.4,1.4

2155 atoms, 299 residues, 1 surfaces, atom bfactor range 1 to 9  

> color byattribute bfactor palette cyanmaroon range

Missing "range" keyword's argument  

> hide surfaces

> color byattribute bfactor

2155 atoms, 299 residues, 1 surfaces, atom bfactor range 1 to 9  

> ui tool show "Color Key"

> ui mousemode right "color key"

> key blue-white-red :min : :max white:

> key blue-white-red :min : :max

> key fontSize 23

> key fontSize 22

> key fontSize 21

> key fontSize 20

> key fontSize 19

> key fontSize 18

> key fontSize 17

> key fontSize 16

> key fontSize 15

> key fontSize 14

> key fontSize 13

> key fontSize 12

> key size 0.24000,0.05000

> key size 0.23000,0.05000

> key size 0.22000,0.05000

> key size 0.21000,0.05000

> key size 0.20000,0.05000

> key size 0.19000,0.05000

> key size 0.20000,0.05000

> key size 0.20000,0.04000

> key size 0.20000,0.03000

> key size 0.20000,0.02000

> key size 0.20000,0.01000

> key size 0.20000,0.02000

> key pos 0.69000,0.08000

> key pos 0.68000,0.08000

> key pos 0.67000,0.08000

> key pos 0.66000,0.08000

> key pos 0.65000,0.08000

> key pos 0.64000,0.08000

> key pos 0.63000,0.08000

> key pos 0.62000,0.08000

> key pos 0.61000,0.08000

> key pos 0.60000,0.08000

> key pos 0.59000,0.08000

> key pos 0.58000,0.08000

> key pos 0.57000,0.08000

> key pos 0.56000,0.08000

> key pos 0.55000,0.08000

> key pos 0.54000,0.08000

> key pos 0.53000,0.08000

> key pos 0.52000,0.08000

> key pos 0.51000,0.08000

> key pos 0.50000,0.08000

> key pos 0.49000,0.08000

> key pos 0.48000,0.08000

> key pos 0.47000,0.08000

> key pos 0.46000,0.08000

> key pos 0.45000,0.08000

> key tickThickness 5.0

> key tickThickness 6.0

> key tickThickness 7.0

> key tickThickness 8.0

> key tickThickness 9.0

> key tickThickness 10.0

> key tickThickness 9.0

> key tickThickness 8.0

> key tickThickness 7.0

> key tickThickness 6.0

> key tickThickness 5.0

> key tickThickness 4.0

> key tickThickness 3.0

> key tickThickness 4.0

> key colorTreatment distinct

> key colorTreatment blended

> ui mousemode right translate

> ui tool show "Color Key"

> ui mousemode right "color key"

> key cyan-white-maroon :min : :max

> key blue-white-red :min : :max

> color bfactor

2155 atoms, 299 residues, 1 surfaces, atom bfactor range 1 to 9  

> show surfaces

> hide surfaces

> lighting gentle

> graphics silhouettes true

> show surfaces

> hide surfaces

> show atoms

> hide atoms

> select add #2

1 model selected  

> hide #2 models

> show #2 models

> select subtract #2

Nothing selected  

> color bfactor palette cyanmaroon range 0,10

2155 atoms, 299 residues, 1 surfaces, atom bfactor range 1 to 9  

> color bfactor palette cyanmaroon range 1,9

2155 atoms, 299 residues, 1 surfaces, atom bfactor range 1 to 9  

> ui tool show "Color Key"

> key cyan-white-maroon :min : :max

> ui mousemode right translate

> save /Users/stribnyj/Desktop/Pry1-consurf.cxs

——— End of log from Thu Mar 7 16:41:11 2024 ———

opened ChimeraX session  

> ui mousemode right select

> select /A:51

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel cartoons

> show sel atoms

> select /A:251

11 atoms, 11 bonds, 1 residue, 1 model selected  

> show sel surfaces

> select up

48 atoms, 49 bonds, 6 residues, 1 model selected  

> select up

2155 atoms, 2201 bonds, 299 residues, 2 models selected  

> show sel surfaces

> hide sel surfaces

[Repeated 1 time(s)]

> select clear

> select /A:249

4 atoms, 3 bonds, 1 residue, 1 model selected  

> show sel atoms

[Repeated 1 time(s)]

> save /Users/cottiers/Desktop/pry1b.cxs

——— End of log from Thu Mar 7 17:37:50 2024 ———

opened ChimeraX session  
Alignment identifier is 1/A  

> select /A:94

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:93-94

17 atoms, 16 bonds, 2 residues, 1 model selected  

> select /A:93

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:93

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) magenta

> show sel atoms

> select
> /A:57-58,156-158,161-174,181-183,187-198,223-236,249-254,291-294,296-297

462 atoms, 467 bonds, 60 residues, 1 model selected  

> select /A:233-234

17 atoms, 16 bonds, 2 residues, 1 model selected  

> select /A:233-234

17 atoms, 16 bonds, 2 residues, 1 model selected  

> select /A:234

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:234

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:24

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:24

7 atoms, 6 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) yellow

> select /A:30

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /A:30

5 atoms, 4 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) yellow

> select /A:44

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:44

7 atoms, 6 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) yellow

> select /A:2

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:2

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) yellow

> select /A:4

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:4-6

23 atoms, 22 bonds, 3 residues, 1 model selected  

> color (#!1 & sel) yellow

> save /Users/cottiers/Desktop/Pry1-040424.cxs

——— End of log from Tue Apr 2 17:20:03 2024 ———

opened ChimeraX session  

> open 5jys

Cannot open '5jys': [Errno 1] Operation not permitted:
'/Users/cottiers/Downloads/ChimeraX/PDB/5jys.cif'  

> close session

> open 5jys

Cannot open '5jys': [Errno 1] Operation not permitted:
'/Users/cottiers/Downloads/ChimeraX/PDB/5jys.cif'  

> open 5jys from pdb_nmr format nmrstar

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/dialog.py", line 197, in fetch  
run(self.session, cmd)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 83, in cmd_open  
provider_args = mgr.fetch_args(fetches[0][1], format_name=fetches[0][2])  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/manager.py", line 191, in fetch_args  
args.update(provider_info.bundle_info.run_provider(self.session,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 396, in run_provider  
api = self._get_api(session.logger)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 520, in _get_api  
m = self.get_module()  
^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 492, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-NMRSTAR has no module  
  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-NMRSTAR has no module  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 492, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-18.8.6
OpenGL renderer: Intel Iris OpenGL Engine
OpenGL vendor: Intel Inc.

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac mini
      Model Identifier: Macmini7,1
      Processor Name: Dual-Core Intel Core i5
      Processor Speed: 2.6 GHz
      Number of Processors: 1
      Total Number of Cores: 2
      L2 Cache (per Core): 256 KB
      L3 Cache: 3 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 481.0.0.0.0
      OS Loader Version: 540.120.3~37
      SMC Version (system): 2.24f32

Software:

    System Software Overview:

      System Version: macOS 12.7.2 (21G1974)
      Kernel Version: Darwin 21.6.0
      Time since boot: 1 day 1:47

Graphics/Displays:

    Intel Iris:

      Chipset Model: Intel Iris
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x0a2e
      Revision ID: 0x0009
      Metal Family: Supported, Metal GPUFamily macOS 1
      Displays:
        DELL P2210H:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Display Serial Number: T735R02814TL
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

[Tom Goddard]

The user tried to use fetch from pdb_nmr without the bundle being installed. I don't know why that gives a traceback, usually that would be a user error that gives a warning saying you need to get the bundle from toolshed. Possibly Greg has already fixed this in the daily build, since it may be the same problem that causes the startup warnings about the NMRSTAR bundle. At any rate the problem will not occur in the daily build because the nmrstar bundle is part of the distribution in the daily build.