The following bug report has been submitted:
Platform: Windows-10-10.0.22631
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "D:\Yao Lab\Data\Structures of hTRPV3\h & mTRPV3_Essential
> Oil_Structure\Paper Writing\202403_hV3_Essential Oil_Figures\ChimeraX
> sessions\240328_hV3_ApoCironellalCitral_TMDTubesCartoon.cxs" format session
Opened Apo map as #2, grid size 240,240,240, pixel 1.07, shown at level 0.391,
step 1, values float32
Opened Citronellal map as #4, grid size 240,240,240, pixel 1.07, shown at
level 0.327, step 1, values float32
Opened Lin map as #6, grid size 240,240,240, pixel 1.07, shown at level 0.319,
step 1, values float32
Opened Citral map as #8, grid size 384,384,384, pixel 0.84, shown at level
0.0905, step 1, values float32
Opened Iso map as #10, grid size 384,384,384, pixel 0.84, shown at level
0.115, step 1, values float32
Opened Apo map 0 as #11.1, grid size 240,240,240, pixel 1.07, shown at level
0.391, step 1, values float32
Opened Apo /AC as #11.2, grid size 240,240,240, pixel 1.07, shown at level
0.298, step 1, values float32
Opened Apo POPC as #11.3, grid size 240,240,240, pixel 1.07, shown at level
0.298, step 1, values float32
Opened Apo /BD as #11.4, grid size 240,240,240, pixel 1.07, shown at level
0.298, step 1, values float32
Opened Citronellal map 0 as #12.1, grid size 240,240,240, pixel 1.07, shown at
level 0.327, step 1, values float32
Opened Citronellal /AC as #12.2, grid size 240,240,240, pixel 1.07, shown at
level 0.194, step 1, values float32
Opened Citronellal POPC as #12.3, grid size 240,240,240, pixel 1.07, shown at
level 0.194, step 1, values float32
Opened Citronellal Molecules as #12.4, grid size 240,240,240, pixel 1.07,
shown at level 0.194, step 1, values float32
Opened Citronellal /BD as #12.5, grid size 240,240,240, pixel 1.07, shown at
level 0.194, step 1, values float32
Opened Lin map 0 as #13.1, grid size 240,240,240, pixel 1.07, shown at level
0.319, step 1, values float32
Opened Lin /AC as #13.2, grid size 240,240,240, pixel 1.07, shown at level
0.169, step 1, values float32
Opened Lin /BD as #13.3, grid size 240,240,240, pixel 1.07, shown at level
0.169, step 1, values float32
Opened Lin Molecules as #13.4, grid size 240,240,240, pixel 1.07, shown at
level 0.169, step 1, values float32
Opened Lin POPC as #13.5, grid size 240,240,240, pixel 1.07, shown at level
0.169, step 1, values float32
Opened Citral map 0 as #14.1, grid size 384,384,384, pixel 0.84, shown at
level 0.0905, step 1, values float32
Opened Citral /AC as #14.2, grid size 384,384,384, pixel 0.84, shown at level
0.0642, step 1, values float32
Opened Citral Molecules as #14.3, grid size 384,384,384, pixel 0.84, shown at
level 0.0642, step 1, values float32
Opened Citral POPC as #14.4, grid size 384,384,384, pixel 0.84, shown at level
0.0642, step 1, values float32
Opened Citral /BD as #14.5, grid size 384,384,384, pixel 0.84, shown at level
0.0642, step 1, values float32
Opened Iso map 0 as #15.1, grid size 384,384,384, pixel 0.84, shown at level
0.115, step 1, values float32
Opened Iso /AC as #15.2, grid size 384,384,384, pixel 0.84, shown at level
0.0941, step 1, values float32
Opened Iso POPC as #15.3, grid size 384,384,384, pixel 0.84, shown at level
0.0941, step 1, values float32
Opened Iso Molecules as #15.4, grid size 384,384,384, pixel 0.84, shown at
level 0.0941, step 1, values float32
Opened Iso /BD as #15.5, grid size 384,384,384, pixel 0.84, shown at level
0.0941, step 1, values float32
Log from Thu Mar 28 19:59:48 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "D:\Yao Lab\Data\Structures of hTRPV3\h & mTRPV3_Essential
> Oil_Structure\Paper Writing\202403_hV3_Essential Oil_Figures\ChimeraX
> sessions\240314_hV3_5StrucuturesMaps_TetramerMaps_FinalFigures.cxs" format
> session
Opened Apo map as #2, grid size 240,240,240, pixel 1.07, shown at level 0.391,
step 1, values float32
Opened Citronellal map as #4, grid size 240,240,240, pixel 1.07, shown at
level 0.327, step 1, values float32
Opened Lin map as #6, grid size 240,240,240, pixel 1.07, shown at level 0.319,
step 1, values float32
Opened Citral map as #8, grid size 384,384,384, pixel 0.84, shown at level
0.0905, step 1, values float32
Opened Iso map as #10, grid size 384,384,384, pixel 0.84, shown at level
0.115, step 1, values float32
Opened Apo map 0 as #11.1, grid size 240,240,240, pixel 1.07, shown at level
0.391, step 1, values float32
Opened Apo /AC as #11.2, grid size 240,240,240, pixel 1.07, shown at level
0.298, step 1, values float32
Opened Apo POPC as #11.3, grid size 240,240,240, pixel 1.07, shown at level
0.298, step 1, values float32
Opened Apo /BD as #11.4, grid size 240,240,240, pixel 1.07, shown at level
0.298, step 1, values float32
Opened Citronellal map 0 as #12.1, grid size 240,240,240, pixel 1.07, shown at
level 0.327, step 1, values float32
Opened Citronellal /AC as #12.2, grid size 240,240,240, pixel 1.07, shown at
level 0.194, step 1, values float32
Opened Citronellal POPC as #12.3, grid size 240,240,240, pixel 1.07, shown at
level 0.194, step 1, values float32
Opened Citronellal Molecules as #12.4, grid size 240,240,240, pixel 1.07,
shown at level 0.194, step 1, values float32
Opened Citronellal /BD as #12.5, grid size 240,240,240, pixel 1.07, shown at
level 0.194, step 1, values float32
Opened Lin map 0 as #13.1, grid size 240,240,240, pixel 1.07, shown at level
0.319, step 1, values float32
Opened Lin /AC as #13.2, grid size 240,240,240, pixel 1.07, shown at level
0.169, step 1, values float32
Opened Lin /BD as #13.3, grid size 240,240,240, pixel 1.07, shown at level
0.169, step 1, values float32
Opened Lin Molecules as #13.4, grid size 240,240,240, pixel 1.07, shown at
level 0.169, step 1, values float32
Opened Lin POPC as #13.5, grid size 240,240,240, pixel 1.07, shown at level
0.169, step 1, values float32
Opened Citral map 0 as #14.1, grid size 384,384,384, pixel 0.84, shown at
level 0.0905, step 1, values float32
Opened Citral /AC as #14.2, grid size 384,384,384, pixel 0.84, shown at level
0.0642, step 1, values float32
Opened Citral Molecules as #14.3, grid size 384,384,384, pixel 0.84, shown at
level 0.0642, step 1, values float32
Opened Citral POPC as #14.4, grid size 384,384,384, pixel 0.84, shown at level
0.0642, step 1, values float32
Opened Citral /BD as #14.5, grid size 384,384,384, pixel 0.84, shown at level
0.0642, step 1, values float32
Opened Iso map 0 as #15.1, grid size 384,384,384, pixel 0.84, shown at level
0.115, step 1, values float32
Opened Iso /AC as #15.2, grid size 384,384,384, pixel 0.84, shown at level
0.0941, step 1, values float32
Opened Iso POPC as #15.3, grid size 384,384,384, pixel 0.84, shown at level
0.0941, step 1, values float32
Opened Iso Molecules as #15.4, grid size 384,384,384, pixel 0.84, shown at
level 0.0941, step 1, values float32
Opened Iso /BD as #15.5, grid size 384,384,384, pixel 0.84, shown at level
0.0941, step 1, values float32
Log from Thu Mar 14 18:57:06 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "D:\Yao Lab\Data\Structures of hTRPV3\h & mTRPV3_Essential
> Oil_Structure\Paper Writing\202403_hV3_Essential Oil_Figures\ChimeraX
> sessions\2400314_hV3_5MapsStructuresAligned_Coloured04_MapsSplit_NoDust.cxs"
> format session
Opened Apo map as #2, grid size 240,240,240, pixel 1.07, shown at level 0.391,
step 1, values float32
Opened Citronellal map as #4, grid size 240,240,240, pixel 1.07, shown at
level 0.327, step 1, values float32
Opened Lin map as #6, grid size 240,240,240, pixel 1.07, shown at level 0.319,
step 1, values float32
Opened Citral map as #8, grid size 384,384,384, pixel 0.84, shown at level
0.0905, step 1, values float32
Opened Iso map as #10, grid size 384,384,384, pixel 0.84, shown at level
0.115, step 1, values float32
Opened Apo map 0 as #11.1, grid size 240,240,240, pixel 1.07, shown at level
0.391, step 1, values float32
Opened Apo /AC as #11.2, grid size 240,240,240, pixel 1.07, shown at level
0.355, step 1, values float32
Opened Apo POPC as #11.3, grid size 240,240,240, pixel 1.07, shown at level
0.355, step 1, values float32
Opened Apo /BD as #11.4, grid size 240,240,240, pixel 1.07, shown at level
0.355, step 1, values float32
Opened Citronellal map 0 as #12.1, grid size 240,240,240, pixel 1.07, shown at
level 0.327, step 1, values float32
Opened Citronellal /AC as #12.2, grid size 240,240,240, pixel 1.07, shown at
level 0.268, step 1, values float32
Opened Citronellal POPC as #12.3, grid size 240,240,240, pixel 1.07, shown at
level 0.268, step 1, values float32
Opened Citronellal Molecules as #12.4, grid size 240,240,240, pixel 1.07,
shown at level 0.268, step 1, values float32
Opened Citronellal /BD as #12.5, grid size 240,240,240, pixel 1.07, shown at
level 0.268, step 1, values float32
Opened Lin map 0 as #13.1, grid size 240,240,240, pixel 1.07, shown at level
0.319, step 1, values float32
Opened Lin /AC as #13.2, grid size 240,240,240, pixel 1.07, shown at level
0.29, step 1, values float32
Opened Lin /BD as #13.3, grid size 240,240,240, pixel 1.07, shown at level
0.29, step 1, values float32
Opened Lin Molecules as #13.4, grid size 240,240,240, pixel 1.07, shown at
level 0.29, step 1, values float32
Opened Lin POPC as #13.5, grid size 240,240,240, pixel 1.07, shown at level
0.29, step 1, values float32
Opened Citral map 0 as #14.1, grid size 384,384,384, pixel 0.84, shown at
level 0.0905, step 1, values float32
Opened Citral /AC as #14.2, grid size 384,384,384, pixel 0.84, shown at level
0.0776, step 1, values float32
Opened Citral Molecules as #14.3, grid size 384,384,384, pixel 0.84, shown at
level 0.0776, step 1, values float32
Opened Citral POPC as #14.4, grid size 384,384,384, pixel 0.84, shown at level
0.0776, step 1, values float32
Opened Citral /BD as #14.5, grid size 384,384,384, pixel 0.84, shown at level
0.0776, step 1, values float32
Opened Iso map 0 as #15.1, grid size 384,384,384, pixel 0.84, shown at level
0.115, step 1, values float32
Opened Iso /AC as #15.2, grid size 384,384,384, pixel 0.84, shown at level
0.0953, step 1, values float32
Opened Iso POPC as #15.3, grid size 384,384,384, pixel 0.84, shown at level
0.0953, step 1, values float32
Opened Iso Molecules as #15.4, grid size 384,384,384, pixel 0.84, shown at
level 0.0953, step 1, values float32
Opened Iso /BD as #15.5, grid size 384,384,384, pixel 0.84, shown at level
0.0953, step 1, values float32
Log from Thu Mar 14 15:56:08 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "D:\Yao Lab\Data\Structures of hTRPV3\h & mTRPV3_Essential
> Oil_Structure\Paper Writing\202403_hV3_Essential Oil_Figures\ChimeraX
> sessions\2400313_hV3_5MapsStructuresAligned_Coloured02.cxs" format session
Opened Apo map as #2, grid size 240,240,240, pixel 1.07, shown at level 0.444,
step 1, values float32
Opened Citronellal map as #4, grid size 240,240,240, pixel 1.07, shown at
level 0.327, step 1, values float32
Opened Lin map as #6, grid size 240,240,240, pixel 1.07, shown at level 0.319,
step 1, values float32
Opened Citral map as #8, grid size 384,384,384, pixel 0.84, shown at level
0.113, step 1, values float32
Opened Iso map as #10, grid size 384,384,384, pixel 0.84, shown at level
0.134, step 1, values float32
Opened hV3_Apo_J65_sharp_aligned.mrc as #12, grid size 240,240,240, pixel
1.07, shown at level 0.453, step 1, values float32
Log from Wed Mar 13 21:36:13 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
> sessions/2400311_hV3_5MapsStructuresAligned_Coloured01.cxs"
Opened Apo map as #2, grid size 240,240,240, pixel 1.07, shown at level 0.444,
step 1, values float32
Opened Citronellal map as #4, grid size 240,240,240, pixel 1.07, shown at
level 0.331, step 1, values float32
Opened Lin map as #6, grid size 240,240,240, pixel 1.07, shown at level 0.341,
step 1, values float32
Opened Citral map as #8, grid size 384,384,384, pixel 0.84, shown at level
0.0992, step 1, values float32
Opened Iso map as #10, grid size 384,384,384, pixel 0.84, shown at level
0.131, step 1, values float32
Log from Mon Mar 11 11:02:41 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "D:\Yao Lab\Data\Structures of hTRPV3\h & mTRPV3_Essential
> Oil_Structure\Paper Writing\202403_hV3_Essential Oil_Figures\ChimeraX
> sessions\2400309_hV3_5MapsStructuresAligned.cxs" format session
Opened Apo map as #2, grid size 240,240,240, pixel 1.07, shown at level 0.693,
step 1, values float32
Opened Citronellal map as #4, grid size 240,240,240, pixel 1.07, shown at
level 0.456, step 1, values float32
Opened Lin map as #6, grid size 240,240,240, pixel 1.07, shown at level 0.317,
step 1, values float32
Opened Citral map as #8, grid size 384,384,384, pixel 0.84, shown at level
0.0901, step 1, values float32
Opened Iso map as #10, grid size 384,384,384, pixel 0.84, shown at level
0.143, step 1, values float32
Log from Sat Mar 9 16:11:37 2024 Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230816
> hTRPV3 Nanodisc Apo/Final Map for atomic
> structure/231110_hV3_Apo_Lipids_VBPLipidModified_FinalTetramer.pdb"
Chain information for 231110_hV3_Apo_Lipids_VBPLipidModified_FinalTetramer.pdb
#1
---
Chain | Description
A B C D | No description available
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230816
> hTRPV3 Nanodisc Apo/Calculations/J65_009_volume_map_sharp.mrc"
Opened J65_009_volume_map_sharp.mrc as #2, grid size 240,240,240, pixel 1.07,
shown at level 0.334, step 1, values float32
> rename #1 "Apo model"
> rename #2 "Apo map"
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230817
> hTRPV3 Nanodisc Citronellal/Final Map for atomic
> model/231104_hV3_Citronellal_J123_Lipids_YesCitro_FinalTetramer.pdb"
Chain information for
231104_hV3_Citronellal_J123_Lipids_YesCitro_FinalTetramer.pdb #3
---
Chain | Description
A B C D | No description available
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230817
> hTRPV3 Nanodisc Citronellal/Calculation/J123_004_volume_map_sharp.mrc"
Opened J123_004_volume_map_sharp.mrc as #4, grid size 240,240,240, pixel 1.07,
shown at level 0.285, step 1, values float32
> rename #3 "Citronellal model"
> rename #4 "Citronellal map"
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230930
> hTRPV3 Nanodisc Linalool/Model
> Building/231107_hV3_Linalool_J229_YesLinMole_YesLipids_FinalTetramer.pdb"
Chain information for
231107_hV3_Linalool_J229_YesLinMole_YesLipids_FinalTetramer.pdb #5
---
Chain | Description
A B C D | No description available
> rename #5 "Lin model"
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20230930
> hTRPV3 Nanodisc Linalool/Calculation/J229_004_volume_map_sharp_flipped.mrc"
Opened J229_004_volume_map_sharp_flipped.mrc as #6, grid size 240,240,240,
pixel 1.07, shown at level 0.288, step 1, values float32
> rename #6 "Lin map"
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20240220
> hTRPV3 Nanodisc Citral/Model building
> PDB/240309_hV3_citral_MapJ258_monomer09_tetramer09.pdb"
Chain information for 240309_hV3_citral_MapJ258_monomer09_tetramer09.pdb #7
---
Chain | Description
A B C D | No description available
> rename #7 "Citral model"
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20240220
> hTRPV3 Nanodisc Citral/Calcultation
> maps/J258_008_volume_map_sharp_Yflipped.mrc"
Opened J258_008_volume_map_sharp_Yflipped.mrc as #8, grid size 384,384,384,
pixel 0.84, shown at level 0.063, step 2, values float32
> rename #8 "Citral map"
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20240225
> hTRPV3 Nanodisc Isodihydrolavandulal/Model building
> PDB/240308_hV3_Iso_MapJ339_monomer03_tetramer02.pdb"
Chain information for 240308_hV3_Iso_MapJ339_monomer03_tetramer02.pdb #9
---
Chain | Description
A B C D | No description available
> rename #9 "Iso model"
> open "D:/Yao Lab/Data/Structures of hTRPV3/hTRPV3 300kV EM Data/20240225
> hTRPV3 Nanodisc Isodihydrolavandulal/Calcultation
> maps/cryosparc_P1_J339_009_volume_map_sharp.mrc"
Opened cryosparc_P1_J339_009_volume_map_sharp.mrc as #10, grid size
384,384,384, pixel 0.84, shown at level 0.0639, step 2, values float32
> rename #10 "Iso map"
> volume #8 step 1
> volume #10 step 1
> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
> sessions/2400309_hV3_5MapsStructuresAligned.cxs" includeMaps true
> select add #10
2 models selected
> select add #8
4 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.95824,-0.28549,-0.01661,364.66,-0.27382,0.93272,-0.23463,94.403,0.082477,-0.22029,-0.97194,353.28,#10,-0.95824,-0.28549,-0.01661,364.66,-0.27382,0.93272,-0.23463,94.403,0.082477,-0.22029,-0.97194,353.28
> view matrix models
> #8,-0.96816,-0.24739,-0.03816,363.73,-0.24297,0.96543,-0.094377,60.606,0.060189,-0.082101,-0.9948,338.42,#10,-0.96816,-0.24739,-0.03816,363.73,-0.24297,0.96543,-0.094377,60.606,0.060189,-0.082101,-0.9948,338.42
> view matrix models
> #8,-0.99894,0.042248,-0.018309,318.65,0.043708,0.99512,-0.08847,8.5903,0.014482,-0.089177,-0.99591,347.12,#10,-0.99894,0.042248,-0.018309,318.65,0.043708,0.99512,-0.08847,8.5903,0.014482,-0.089177,-0.99591,347.12
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.99894,0.042248,-0.018309,317.84,0.043708,0.99512,-0.08847,1.9796,0.014482,-0.089177,-0.99591,293.47,#10,-0.99894,0.042248,-0.018309,317.84,0.043708,0.99512,-0.08847,1.9796,0.014482,-0.089177,-0.99591,293.47
> view matrix models
> #8,-0.99894,0.042248,-0.018309,288.23,0.043708,0.99512,-0.08847,-32.393,0.014482,-0.089177,-0.99591,295.66,#10,-0.99894,0.042248,-0.018309,288.23,0.043708,0.99512,-0.08847,-32.393,0.014482,-0.089177,-0.99591,295.66
> select clear
> volume #2 level 0.6934
> volume #4 level 0.4561
> volume #6 level 0.5059
> volume #8 level 0.1393
> volume #10 level 0.2034
> hide #!1 models
> hide #!3 models
> hide #!5 models
> hide #!7 models
> hide #!9 models
> select #4
2 models selected
> view matrix models #4,1,0,0,0.25852,0,1,0,-1.1466,0,0,1,7.0454
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.69063,-0.72317,-0.0076774,133.74,0.72321,0.69061,0.0055667,-54.932,0.0012764,-0.0093969,0.99996,8.0933
> select clear
> select #8
2 models selected
> view matrix models
> #8,-0.51407,-0.85691,-0.037929,357.58,-0.85192,0.51522,-0.093703,189.92,0.099837,-0.015857,-0.99488,269.95
> view matrix models
> #8,-0.51004,-0.85796,-0.061378,361.02,-0.85684,0.51303,-0.051134,183.94,0.07536,0.026511,-0.9968,267.43
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.51004,-0.85796,-0.061378,358.27,-0.85684,0.51303,-0.051134,188.62,0.07536,0.026511,-0.9968,270.46
> view matrix models
> #8,-0.51004,-0.85796,-0.061378,359.32,-0.85684,0.51303,-0.051134,189.26,0.07536,0.026511,-0.9968,270.42
> select clear
> select #10
2 models selected
> view matrix models
> #10,-0.99894,0.042248,-0.018309,286.91,0.043708,0.99512,-0.08847,-28.907,0.014482,-0.089177,-0.99591,299.09
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.9976,0.047283,-0.050612,291.25,0.048437,0.99859,-0.021824,-41.313,0.049509,-0.024223,-0.99848,283.39
> view matrix models
> #10,-0.9987,0.0037034,-0.050819,298.49,0.0048409,0.99974,-0.02228,-34.392,0.050724,-0.022497,-0.99846,282.91
> select clear
> ui tool show "Fit in Map"
QWindowsWindow::setGeometry: Unable to set geometry 1150x222+2764+1728 (frame:
1172x278+2753+1683) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY2". Resulting geometry: 1154x237+2762+1715 (frame:
1176x293+2751+1670) margins: 11, 45, 11, 11 minimum size: 364x88 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=786453, y=786487), mintrack=POINT(x=568, y=188)))
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.4243, correlation about mean = 0.07894, overlap = 1.468e+04
steps = 68, shift = 1.48, angle = 0.55 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.68981036 -0.72399010 0.00000481 132.78786534
0.72399010 0.68981036 -0.00007083 -53.12451213
0.00004796 0.00005235 1.00000000 6.23169741
Axis 0.00008507 -0.00002980 1.00000000
Axis point 128.39039725 128.40225836 0.00000000
Rotation angle (degrees) 46.38490075
Shift along axis 6.24457690
> select #4
2 models selected
> view matrix models
> #4,0.69159,-0.72145,0.034865,128.15,0.72213,0.68961,-0.054484,-46.49,0.015265,0.062858,0.99791,-3.5412
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.69159,-0.72145,0.034865,127.99,0.72213,0.68961,-0.054484,-46.065,0.015265,0.062858,0.99791,-0.61973
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8646, correlation about mean = 0.5456, overlap = 4.285e+04
steps = 84, shift = 2.13, angle = 4.35 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66211982 -0.74939799 0.00000272 139.60613586
0.74939799 0.66211982 -0.00000044 -52.83836648
-0.00000147 0.00000232 1.00000000 11.05455301
Axis 0.00000184 0.00000279 1.00000000
Axis point 128.39925722 128.39980032 0.00000000
Rotation angle (degrees) 48.53825641
Shift along axis 11.05466256
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8641, correlation about mean = 0.5443, overlap = 4.292e+04
steps = 28, shift = 0.0183, angle = 0.0102 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66225232 -0.74928090 0.00001283 139.57346358
0.74928090 0.66225232 0.00001090 -52.84148741
-0.00001666 0.00000240 1.00000000 11.03821875
Axis -0.00000567 0.00001968 1.00000000
Axis point 128.40045977 128.39853487 0.00000000
Rotation angle (degrees) 48.52812518
Shift along axis 11.03638733
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8648, correlation about mean = 0.5458, overlap = 4.283e+04
steps = 28, shift = 0.0242, angle = 0.00898 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66215356 -0.74936817 -0.00005182 139.60153051
0.74936817 0.66215356 -0.00004394 -52.83823274
0.00006724 -0.00000974 1.00000000 11.05270263
Axis 0.00002281 -0.00007944 1.00000000
Axis point 128.39920219 128.40425867 0.00000000
Rotation angle (degrees) 48.53567694
Shift along axis 11.06008500
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8641, correlation about mean = 0.5444, overlap = 4.291e+04
steps = 40, shift = 0.0225, angle = 0.00755 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66225034 -0.74928265 -0.00003728 139.57874783
0.74928265 0.66225034 -0.00006608 -52.83451133
0.00007420 0.00001583 1.00000000 11.02627015
Axis 0.00005466 -0.00007439 1.00000000
Axis point 128.39367210 128.40711656 0.00000000
Rotation angle (degrees) 48.52827729
Shift along axis 11.03782938
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8648, correlation about mean = 0.5458, overlap = 4.283e+04
steps = 28, shift = 0.0221, angle = 0.0131 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66215682 -0.74936529 0.00001922 139.59502633
0.74936529 0.66215682 0.00011594 -52.84738472
-0.00009961 -0.00006236 0.99999999 11.08008931
Axis -0.00011897 0.00007929 0.99999999
Axis point 128.40917222 128.39422854 0.00000000
Rotation angle (degrees) 48.53542805
Shift along axis 11.05929180
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8638, correlation about mean = 0.5438, overlap = 4.294e+04
steps = 28, shift = 0.0308, angle = 0.0118 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66227274 -0.74926285 0.00001726 139.55976632
0.74926285 0.66227274 -0.00001931 -52.82668440
0.00000304 0.00002572 1.00000000 11.02677049
Axis 0.00003005 0.00000949 1.00000000
Axis point 128.37900071 128.39599282 0.00000000
Rotation angle (degrees) 48.52656375
Shift along axis 11.03046248
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8645, correlation about mean = 0.5453, overlap = 4.286e+04
steps = 40, shift = 0.0252, angle = 0.00861 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66216318 -0.74935968 -0.00000687 139.59634894
0.74935968 0.66216318 0.00000561 -52.83999345
0.00000035 -0.00000887 1.00000000 11.05223187
Axis -0.00000966 -0.00000482 1.00000000
Axis point 128.40066255 128.40026902 0.00000000
Rotation angle (degrees) 48.53494149
Shift along axis 11.05113776
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8642, correlation about mean = 0.5447, overlap = 4.29e+04
steps = 40, shift = 0.0146, angle = 0.0119 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66222817 -0.74930223 0.00017153 139.55012224
0.74930224 0.66222817 -0.00005367 -52.83341598
-0.00007338 0.00016407 0.99999998 11.03025584
Axis 0.00014530 0.00016343 0.99999998
Axis point 128.37824309 128.36737942 0.00000000
Rotation angle (degrees) 48.52997295
Shift along axis 11.04189790
> fitmap #4 inMap #2
Fit map Citronellal map in map Apo map using 71063 points
correlation = 0.8648, correlation about mean = 0.5458, overlap = 4.283e+04
steps = 28, shift = 0.0232, angle = 0.0113 degrees
Position of Citronellal map (#4) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.66217821 -0.74934639 -0.00000033 139.59381551
0.74934639 0.66217821 -0.00012304 -52.83172091
0.00009242 0.00008123 0.99999999 11.03764983
Axis 0.00013630 -0.00006189 0.99999999
Axis point 128.39028411 128.40426505 0.00000000
Rotation angle (degrees) 48.53379252
Shift along axis 11.05994583
> select clear
> select #6
2 models selected
> view matrix models #6,1,0,0,-0.67723,0,1,0,0.51175,0,0,1,-8.5521
> fitmap #6 inMap #2
Fit map Lin map in map Apo map using 56284 points
correlation = 0.9058, correlation about mean = 0.5965, overlap = 4.547e+04
steps = 68, shift = 1.46, angle = 1.47 degrees
Position of Lin map (#6) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.99967068 0.02566202 0.00002793 -3.22852632
-0.02566202 0.99967068 0.00003560 4.40302278
-0.00002700 -0.00003631 1.00000000 -7.38317124
Axis -0.00140119 0.00107031 -0.99999845
Axis point 169.63176114 127.58276888 0.00000000
Rotation angle (degrees) 1.47048940
Shift along axis 7.39239612
> fitmap #6 inMap #2
Fit map Lin map in map Apo map using 56284 points
correlation = 0.9053, correlation about mean = 0.5957, overlap = 4.556e+04
steps = 28, shift = 0.00983, angle = 0.00384 degrees
Position of Lin map (#6) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.99967031 0.02567617 -0.00000100 -3.22694563
-0.02567617 0.99967031 -0.00002318 4.41064600
0.00000040 0.00002320 1.00000000 -7.40388744
Axis 0.00090323 -0.00002717 -0.99999959
Axis point 170.14242554 128.12361402 0.00000000
Rotation angle (degrees) 1.47129864
Shift along axis 7.40084991
> fitmap #6 inMap #2
Fit map Lin map in map Apo map using 56284 points
correlation = 0.906, correlation about mean = 0.5967, overlap = 4.543e+04
steps = 28, shift = 0.0138, angle = 0.00211 degrees
Position of Lin map (#6) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.99967050 0.02566900 0.00001018 -3.22992752
-0.02566900 0.99967050 0.00001115 4.40691479
-0.00000989 -0.00001141 1.00000000 -7.38468642
Axis -0.00043955 0.00039108 -0.99999983
Axis point 169.92822399 127.88470034 0.00000000
Rotation angle (degrees) 1.47088704
Shift along axis 7.38782831
> fitmap #6 inMap #2
Fit map Lin map in map Apo map using 56284 points
correlation = 0.9058, correlation about mean = 0.5967, overlap = 4.546e+04
steps = 36, shift = 0.00799, angle = 0.00553 degrees
Position of Lin map (#6) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.99967292 0.02557428 0.00000182 -3.21041007
-0.02557428 0.99967292 -0.00000543 4.39473645
-0.00000196 0.00000538 1.00000000 -7.39181589
Axis 0.00021130 0.00007386 -0.99999997
Axis point 170.18658200 127.77037154 0.00000000
Rotation angle (degrees) 1.46545833
Shift along axis 7.39146196
> fitmap #6 inMap #2
Fit map Lin map in map Apo map using 56284 points
correlation = 0.9051, correlation about mean = 0.5953, overlap = 4.561e+04
steps = 40, shift = 0.0151, angle = 0.00569 degrees
Position of Lin map (#6) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.99967052 0.02566813 0.00002069 -3.22608026
-0.02566813 0.99967052 -0.00003189 4.40957110
-0.00002150 0.00003134 1.00000000 -7.40758117
Axis 0.00123165 0.00082194 -0.99999890
Axis point 169.90859201 128.22065614 0.00000000
Rotation angle (degrees) 1.47083890
Shift along axis 7.40722407
> fitmap #6 inMap #2
Fit map Lin map in map Apo map using 56284 points
correlation = 0.9058, correlation about mean = 0.5964, overlap = 4.547e+04
steps = 28, shift = 0.0152, angle = 0.00258 degrees
Position of Lin map (#6) relative to Apo map (#2) coordinates:
Matrix rotation and translation
0.99967004 0.02568698 -0.00000054 -3.22731631
-0.02568698 0.99967004 0.00000315 4.40912240
0.00000062 -0.00000314 1.00000000 -7.39101798
Axis -0.00012247 -0.00002257 -0.99999999
Axis point 170.01314238 127.78886578 0.00000000
Rotation angle (degrees) 1.47191719
Shift along axis 7.39131363
> select clear
> select #8
2 models selected
> view matrix models
> #8,-0.51004,-0.85796,-0.061378,358.34,-0.85684,0.51303,-0.051134,191.29,0.07536,0.026511,-0.9968,270.86
> fitmap #8 inMap #2
Fit map Citral map in map Apo map using 153456 points
correlation = 0.8232, correlation about mean = 0.4692, overlap = 2.931e+04
steps = 92, shift = 3.1, angle = 5.74 degrees
Position of Citral map (#8) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.45965373 -0.88809823 -0.00000005 345.01944517
-0.88809823 0.45965373 -0.00000028 197.88572101
0.00000027 -0.00000008 -1.00000001 290.22961292
Axis 0.51994358 -0.85419930 0.00149020
Axis point 232.73535296 0.00000000 145.28743669
Rotation angle (degrees) 179.99998918
Shift along axis 10.78930084
> fitmap #8 inMap #2
Fit map Citral map in map Apo map using 153456 points
correlation = 0.8233, correlation about mean = 0.4697, overlap = 2.93e+04
steps = 28, shift = 0.00558, angle = 0.0184 degrees
Position of Citral map (#8) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.45936890 -0.88824559 0.00000112 344.99714446
-0.88824559 0.45936890 -0.00000079 197.95506980
0.00000019 -0.00000136 -1.00000001 290.23539877
Axis -0.51986233 0.85424990 0.00051719
Axis point 232.73238840 0.00000000 145.05772149
Rotation angle (degrees) 179.99996885
Shift along axis -10.09781495
> fitmap #8 inMap #2
Fit map Citral map in map Apo map using 153456 points
correlation = 0.8229, correlation about mean = 0.4675, overlap = 2.931e+04
steps = 28, shift = 0.0285, angle = 0.0163 degrees
Position of Citral map (#8) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.45962139 -0.88811497 0.00000014 345.01692028
-0.88811496 0.45962139 -0.00000001 197.89349464
-0.00000006 -0.00000013 -1.00000001 290.20676387
Axis -0.51953740 0.85444442 0.00237248
Axis point 232.67216753 0.00000000 144.82863095
Rotation angle (degrees) 179.99999320
Shift along axis -9.47168986
> fitmap #8 inMap #2
Fit map Citral map in map Apo map using 153456 points
correlation = 0.8229, correlation about mean = 0.4674, overlap = 2.931e+04
steps = 24, shift = 0.000283, angle = 0.00134 degrees
Position of Citral map (#8) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.45964212 -0.88810424 -0.00000005 345.01854747
-0.88810424 0.45964212 0.00000001 197.88845207
0.00000002 0.00000005 -1.00000001 290.20644217
Axis 0.52058626 -0.85377643 0.00746719
Axis point 232.84005807 0.00000000 145.96859774
Rotation angle (degrees) 179.99999784
Shift along axis 12.82644414
> select #10
2 models selected
> view matrix models
> #10,-0.9987,0.0037034,-0.050819,297.33,0.0048409,0.99974,-0.02228,-32.398,0.050724,-0.022497,-0.99846,283
> fitmap #10 inMap #2
Fit map Iso map in map Apo map using 106119 points
correlation = 0.8316, correlation about mean = 0.4072, overlap = 2.973e+04
steps = 88, shift = 3.36, angle = 5.64 degrees
Position of Iso map (#10) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.99703713 -0.07692182 0.00008207 301.59392699
-0.07692182 0.99703714 0.00000177 -19.99651484
-0.00008196 -0.00000455 -1.00000000 289.96497424
Axis -0.03848889 0.99925903 -0.00000202
Axis point 150.41781063 0.00000000 144.97629878
Rotation angle (degrees) 179.99529732
Shift along axis -31.59029866
> fitmap #10 inMap #2
Fit map Iso map in map Apo map using 106119 points
correlation = 0.8315, correlation about mean = 0.4066, overlap = 2.973e+04
steps = 28, shift = 0.0102, angle = 0.0061 degrees
Position of Iso map (#10) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.99703905 -0.07689703 -0.00002137 301.60817214
-0.07689703 0.99703905 0.00000191 -20.00080850
0.00002116 0.00000355 -1.00000001 289.93682523
Axis 0.03847910 -0.99925941 -0.00000648
Axis point 150.41745035 0.00000000 144.97007712
Rotation angle (degrees) 179.99878047
Shift along axis 31.58972801
> fitmap #10 inMap #2
Fit map Iso map in map Apo map using 106119 points
correlation = 0.8317, correlation about mean = 0.4074, overlap = 2.974e+04
steps = 28, shift = 0.0101, angle = 0.0135 degrees
Position of Iso map (#10) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.99705579 -0.07667952 -0.00010403 301.59008845
-0.07667953 0.99705580 0.00003489 -20.04428947
0.00010105 0.00004277 -1.00000000 289.92774593
Axis 0.03836845 -0.99926366 -0.00002049
Axis point 150.40278327 0.00000000 144.97179020
Rotation angle (degrees) 179.99412042
Shift along axis 31.59513311
> fitmap #10 inMap #2
Fit map Iso map in map Apo map using 106119 points
correlation = 0.8316, correlation about mean = 0.4074, overlap = 2.973e+04
steps = 36, shift = 0.00186, angle = 0.0136 degrees
Position of Iso map (#10) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.99704081 -0.07687418 0.00002979 301.59535156
-0.07687418 0.99704081 0.00000833 -20.00618042
-0.00003034 0.00000602 -1.00000001 289.95649098
Axis -0.03846407 0.99925998 -0.00000003
Axis point 150.41481367 0.00000000 144.97598432
Rotation angle (degrees) 179.99827627
Shift along axis -31.59196976
> select clear
> fitmap #10 inMap #2
Fit map Iso map in map Apo map using 106119 points
correlation = 0.8315, correlation about mean = 0.4067, overlap = 2.973e+04
steps = 28, shift = 0.0107, angle = 0.00224 degrees
Position of Iso map (#10) relative to Apo map (#2) coordinates:
Matrix rotation and translation
-0.99704142 -0.07686623 -0.00000682 301.60107069
-0.07686624 0.99704142 -0.00000256 -20.00537355
0.00000700 -0.00000203 -1.00000001 289.94105437
Axis 0.03846802 -0.99925983 -0.00001459
Axis point 150.41496489 0.00000000 144.97119315
Rotation angle (degrees) 179.99960362
Shift along axis 31.58833338
> ui tool show Matchmaker
> matchmaker #!3,5,7,9 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Apo model, chain A (#1) with Citronellal model, chain B (#3),
sequence alignment score = 2842.4
RMSD between 449 pruned atom pairs is 1.030 angstroms; (across all 605 pairs:
2.737)
Matchmaker Apo model, chain A (#1) with Lin model, chain B (#5), sequence
alignment score = 2812.3
RMSD between 479 pruned atom pairs is 0.882 angstroms; (across all 603 pairs:
2.459)
Matchmaker Apo model, chain A (#1) with Citral model, chain A (#7), sequence
alignment score = 2744.7
RMSD between 462 pruned atom pairs is 1.073 angstroms; (across all 605 pairs:
2.684)
Matchmaker Apo model, chain A (#1) with Iso model, chain B (#9), sequence
alignment score = 2829.2
RMSD between 452 pruned atom pairs is 1.091 angstroms; (across all 605 pairs:
2.642)
> show #!1 models
> show #!3 models
> fitmap #3 inMap #4
Fit molecule Citronellal model (#3) to map Citronellal map (#4) using 21236
atoms
average map value = 0.5172, steps = 52
shifted from previous position = 0.268
rotated from previous position = 0.901 degrees
atoms outside contour = 10212, contour level = 0.45607
Position of Citronellal model (#3) relative to Citronellal map (#4)
coordinates:
Matrix rotation and translation
-0.99999998 -0.00019229 -0.00002268 256.82783277
0.00019229 -0.99999997 -0.00015207 256.79302036
-0.00002265 -0.00015207 0.99999999 0.03733352
Axis -0.00001133 -0.00007605 1.00000000
Axis point 128.40157175 128.40885812 0.00000000
Rotation angle (degrees) 179.98898245
Shift along axis 0.01489445
> fitmap #3 inMap #4
Fit molecule Citronellal model (#3) to map Citronellal map (#4) using 21236
atoms
average map value = 0.5171, steps = 24
shifted from previous position = 0.00507
rotated from previous position = 0.00468 degrees
atoms outside contour = 10214, contour level = 0.45607
Position of Citronellal model (#3) relative to Citronellal map (#4)
coordinates:
Matrix rotation and translation
-0.99999999 -0.00013456 -0.00007325 256.82478768
0.00013457 -0.99999998 -0.00012429 256.79549014
-0.00007323 -0.00012430 0.99999999 0.04481524
Axis -0.00003662 -0.00006217 1.00000000
Axis point 128.40375553 128.40638658 0.00000000
Rotation angle (degrees) 179.99228980
Shift along axis 0.01944568
> fitmap #3 inMap #4
Fit molecule Citronellal model (#3) to map Citronellal map (#4) using 21236
atoms
average map value = 0.5172, steps = 36
shifted from previous position = 0.00646
rotated from previous position = 0.0159 degrees
atoms outside contour = 10221, contour level = 0.45607
Position of Citronellal model (#3) relative to Citronellal map (#4)
coordinates:
Matrix rotation and translation
-1.00000000 -0.00006237 0.00007435 256.80172379
0.00006238 -0.99999999 0.00009914 256.78402183
0.00007435 0.00009915 0.99999999 -0.00739910
Axis 0.00003717 0.00004953 1.00000000
Axis point 128.39685777 128.39601563 0.00000000
Rotation angle (degrees) 179.99642615
Shift along axis 0.01486489
> fitmap #3 inMap #4
Fit molecule Citronellal model (#3) to map Citronellal map (#4) using 21236
atoms
average map value = 0.5172, steps = 36
shifted from previous position = 0.00422
rotated from previous position = 0.000759 degrees
atoms outside contour = 10219, contour level = 0.45607
Position of Citronellal model (#3) relative to Citronellal map (#4)
coordinates:
Matrix rotation and translation
-0.99999999 -0.00006135 0.00008754 256.80304304
0.00006135 -0.99999999 0.00009993 256.78711100
0.00008753 0.00009993 0.99999999 -0.00887352
Axis 0.00004376 0.00004992 1.00000000
Axis point 128.39758322 128.39749447 0.00000000
Rotation angle (degrees) 179.99648488
Shift along axis 0.01518422
> fitmap #5 inMap #6
Fit molecule Lin model (#5) to map Lin map (#6) using 20572 atoms
average map value = 0.5199, steps = 48
shifted from previous position = 0.296
rotated from previous position = 0.619 degrees
atoms outside contour = 11576, contour level = 0.50595
Position of Lin model (#5) relative to Lin map (#6) coordinates:
Matrix rotation and translation
-0.99960959 0.02793611 0.00048943 253.07945713
-0.02793595 -0.99960966 0.00032627 259.22655723
0.00049835 0.00031247 0.99999983 7.38019549
Axis -0.00024699 -0.00015971 -0.99999996
Axis point 128.34960253 127.84484821 0.00000000
Rotation angle (degrees) 178.39917505
Shift along axis -7.48410594
> fitmap #5 inMap #6
Fit molecule Lin model (#5) to map Lin map (#6) using 20572 atoms
average map value = 0.5198, steps = 40
shifted from previous position = 0.0171
rotated from previous position = 0.0106 degrees
atoms outside contour = 11577, contour level = 0.50595
Position of Lin model (#5) relative to Lin map (#6) coordinates:
Matrix rotation and translation
-0.99960938 0.02794022 0.00065548 253.05902422
-0.02793995 -0.99960952 0.00040945 259.21755042
0.00066666 0.00039097 0.99999970 7.33141337
Axis -0.00033060 -0.00020014 -0.99999993
Axis point 128.33928375 127.84009067 0.00000000
Rotation angle (degrees) 178.39894250
Shift along axis -7.46695480
> hide #!4 models
> hide #!3 models
> show #!5 models
> show #!6 models
> fitmap #5 inMap #6
Fit molecule Lin model (#5) to map Lin map (#6) using 20572 atoms
average map value = 0.5199, steps = 28
shifted from previous position = 0.0201
rotated from previous position = 0.000617 degrees
atoms outside contour = 11573, contour level = 0.50595
Position of Lin model (#5) relative to Lin map (#6) coordinates:
Matrix rotation and translation
-0.99960949 0.02793618 0.00065670 253.05562168
-0.02793591 -0.99960963 0.00041936 259.21473845
0.00066816 0.00040085 0.99999970 7.34964367
Axis -0.00033128 -0.00020509 -0.99999992
Axis point 128.33729491 127.83894443 0.00000000
Rotation angle (degrees) 178.39917421
Shift along axis -7.48663836
> fitmap #5 inMap #6
Fit molecule Lin model (#5) to map Lin map (#6) using 20572 atoms
average map value = 0.5198, steps = 44
shifted from previous position = 0.0252
rotated from previous position = 0.00634 degrees
atoms outside contour = 11578, contour level = 0.50595
Position of Lin model (#5) relative to Lin map (#6) coordinates:
Matrix rotation and translation
-0.99960931 0.02794125 0.00071267 253.05155426
-0.02794103 -0.99960952 0.00032398 259.22584283
0.00072145 0.00030394 0.99999969 7.33026943
Axis -0.00035860 -0.00015701 -0.99999992
Axis point 128.33557481 127.84438205 0.00000000
Rotation angle (degrees) 178.39888214
Shift along axis -7.46171486
> fitmap #5 inMap #6
Fit molecule Lin model (#5) to map Lin map (#6) using 20572 atoms
average map value = 0.5199, steps = 28
shifted from previous position = 0.0219
rotated from previous position = 7.62e-05 degrees
atoms outside contour = 11570, contour level = 0.50595
Position of Lin model (#5) relative to Lin map (#6) coordinates:
Matrix rotation and translation
-0.99960928 0.02794257 0.00071254 253.05439535
-0.02794235 -0.99960948 0.00032392 259.22201199
0.00072131 0.00030388 0.99999969 7.35166133
Axis -0.00035853 -0.00015698 -0.99999992
Axis point 128.33705064 127.84236164 0.00000000
Rotation angle (degrees) 178.39880641
Shift along axis -7.48308191
> fitmap #5 inMap #6
Fit molecule Lin model (#5) to map Lin map (#6) using 20572 atoms
average map value = 0.5199, steps = 40
shifted from previous position = 0.00657
rotated from previous position = 0.0152 degrees
atoms outside contour = 11577, contour level = 0.50595
Position of Lin model (#5) relative to Lin map (#6) coordinates:
Matrix rotation and translation
-0.99960947 0.02793952 0.00054192 253.07815155
-0.02793924 -0.99960948 0.00052737 259.19530535
0.00055644 0.00051202 0.99999971 7.34032573
Axis -0.00027464 -0.00025990 -0.99999993
Axis point 128.34884686 127.82865623 0.00000000
Rotation angle (degrees) 178.39898308
Shift along axis -7.47719561
> hide #!5 models
> hide #!6 models
> show #!7 models
> show #!8 models
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 44
shifted from previous position = 0.865
rotated from previous position = 0.831 degrees
atoms outside contour = 9212, contour level = 0.13932
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
-0.00000970 -0.99999999 0.00000319 321.72030430
0.99999999 -0.00000970 -0.00001862 -0.83521314
0.00001862 0.00000319 0.99999999 0.00522156
Axis 0.00001091 -0.00000772 1.00000000
Axis point 161.27775461 160.44098517 0.00000000
Rotation angle (degrees) 90.00055579
Shift along axis 0.00873716
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 36
shifted from previous position = 0.0165
rotated from previous position = 0.00104 degrees
atoms outside contour = 9219, contour level = 0.13932
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
-0.00001165 -0.99999999 0.00002030 321.71539022
0.99999999 -0.00001165 -0.00001292 -0.83636213
0.00001292 0.00002030 0.99999999 -0.01294824
Axis 0.00001661 0.00000369 1.00000000
Axis point 161.27587140 160.43763933 0.00000000
Rotation angle (degrees) 90.00066780
Shift along axis -0.00760793
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.0225
rotated from previous position = 0.012 degrees
atoms outside contour = 9219, contour level = 0.13932
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
0.00019678 -0.99999997 0.00000252 321.68753256
0.99999997 0.00019678 -0.00001536 -0.86900942
0.00001536 0.00000252 0.99999999 0.01182062
Axis 0.00000894 -0.00000642 1.00000000
Axis point 161.27835640 160.44091480 0.00000000
Rotation angle (degrees) 89.98872559
Shift along axis 0.01470206
> hide #!7 models
> show #!7 models
> hide #!2 models
> hide #!1 models
> volume #8 level 0.1195
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.0192
rotated from previous position = 0.0132 degrees
atoms outside contour = 7612, contour level = 0.11954
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
-0.00003423 -0.99999999 -0.00000145 321.72547296
0.99999999 -0.00003423 -0.00001833 -0.83135456
0.00001833 -0.00000145 0.99999999 -0.00724916
Axis 0.00000844 -0.00000989 1.00000000
Axis point 161.27839958 160.44155185 0.00000000
Rotation angle (degrees) 90.00196163
Shift along axis -0.00452425
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.0106
rotated from previous position = 0.00207 degrees
atoms outside contour = 7603, contour level = 0.11954
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
-0.00006870 -0.99999999 0.00000400 321.73008636
0.99999999 -0.00006870 -0.00002765 -0.82428903
0.00002765 0.00000400 0.99999999 0.00099984
Axis 0.00001582 -0.00001182 1.00000000
Axis point 161.27715934 160.44184663 0.00000000
Rotation angle (degrees) 90.00393657
Shift along axis 0.00610049
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.0112
rotated from previous position = 0.0148 degrees
atoms outside contour = 7604, contour level = 0.11954
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
0.00019036 -0.99999997 -0.00000047 321.68904724
0.99999997 0.00019036 -0.00002172 -0.86692550
0.00002172 -0.00000046 0.99999999 -0.00849167
Axis 0.00001063 -0.00001110 1.00000000
Axis point 161.27806896 160.44168131 0.00000000
Rotation angle (degrees) 89.98909347
Shift along axis -0.00506223
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.013
rotated from previous position = 0.0134 degrees
atoms outside contour = 7602, contour level = 0.11954
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
-0.00004360 -0.99999999 -0.00000077 321.72682065
0.99999999 -0.00004360 -0.00002098 -0.82948008
0.00002098 -0.00000077 0.99999999 0.00468505
Axis 0.00001010 -0.00001087 1.00000000
Axis point 161.27813222 160.44165691 0.00000000
Rotation angle (degrees) 90.00249806
Shift along axis 0.00794409
Average map value = 0.1828 for 21220 atoms, 7602 outside contour
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.0141
rotated from previous position = 0.0123 degrees
atoms outside contour = 7605, contour level = 0.11954
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
0.00017042 -0.99999998 -0.00000217 321.69252755
0.99999998 0.00017042 -0.00001953 -0.86408073
0.00001953 -0.00000217 0.99999999 -0.00899993
Axis 0.00000868 -0.00001085 1.00000000
Axis point 161.27837785 160.44163702 0.00000000
Rotation angle (degrees) 89.99023570
Shift along axis -0.00619807
> volume #8 level 0.07434
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.0155
rotated from previous position = 0.0111 degrees
atoms outside contour = 3175, contour level = 0.074338
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
-0.00002403 -0.99999999 -0.00000003 321.72347150
0.99999999 -0.00002403 -0.00001845 -0.83302338
0.00001845 -0.00000003 0.99999999 0.00633572
Axis 0.00000921 -0.00000924 1.00000000
Axis point 161.27823736 160.44135817 0.00000000
Rotation angle (degrees) 90.00137697
Shift along axis 0.00930638
Average map value = 0.1828 for 21220 atoms, 3175 outside contour
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 28
shifted from previous position = 0.0161
rotated from previous position = 0.00991 degrees
atoms outside contour = 3172, contour level = 0.074338
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
0.00014891 -0.99999998 -0.00000236 321.69605116
0.99999998 0.00014891 -0.00001774 -0.86087967
0.00001774 -0.00000236 0.99999999 -0.00922991
Axis 0.00000769 -0.00001005 1.00000000
Axis point 161.27852958 160.44153845 0.00000000
Rotation angle (degrees) 89.99146842
Shift along axis -0.00674760
> hide #!8 models
> hide #!7 models
> show #!9 models
> show #!10 models
> fitmap #9 inMap #10
Fit molecule Iso model (#9) to map Iso map (#10) using 21352 atoms
average map value = 0.2332, steps = 56
shifted from previous position = 0.684
rotated from previous position = 1.26 degrees
atoms outside contour = 10333, contour level = 0.20338
Position of Iso model (#9) relative to Iso map (#10) coordinates:
Matrix rotation and translation
0.99999999 0.00008029 -0.00000199 -0.01283747
-0.00008029 0.99999999 0.00000282 0.00591466
0.00000199 -0.00000282 0.99999999 -0.00626025
Axis -0.03510488 -0.02478139 -0.99907634
Axis point 75.68476490 157.02547327 0.00000000
Rotation angle (degrees) 0.00460449
Shift along axis 0.00655855
> fitmap #9 inMap #10
Fit molecule Iso model (#9) to map Iso map (#10) using 21352 atoms
average map value = 0.2332, steps = 28
shifted from previous position = 0.0206
rotated from previous position = 0.00376 degrees
atoms outside contour = 10331, contour level = 0.20338
Position of Iso model (#9) relative to Iso map (#10) coordinates:
Matrix rotation and translation
0.99999998 0.00014436 0.00001249 -0.02542382
-0.00014436 0.99999998 0.00000248 0.02296761
-0.00001249 -0.00000248 0.99999999 0.01553301
Axis -0.01711121 0.08621364 -0.99612972
Axis point 166.88006326 177.66870885 0.00000000
Rotation angle (degrees) 0.00830360
Shift along axis -0.01305774
> fitmap #9 inMap #10
Fit molecule Iso model (#9) to map Iso map (#10) using 21352 atoms
average map value = 0.2332, steps = 28
shifted from previous position = 0.00023
rotated from previous position = 0.0178 degrees
atoms outside contour = 10336, contour level = 0.20338
Position of Iso model (#9) relative to Iso map (#10) coordinates:
Matrix rotation and translation
0.99999998 -0.00016677 0.00001501 0.02435175
0.00016677 0.99999998 -0.00000241 -0.02616574
-0.00001501 0.00000241 0.99999999 0.01520762
Axis 0.01439502 0.08960343 0.99587349
Axis point 163.97174276 144.86816600 0.00000000
Rotation angle (degrees) 0.00959500
Shift along axis 0.01315087
> fitmap #9 inMap #10
Fit molecule Iso model (#9) to map Iso map (#10) using 21352 atoms
average map value = 0.2332, steps = 24
shifted from previous position = 0.000105
rotated from previous position = 0.000365 degrees
atoms outside contour = 10333, contour level = 0.20338
Position of Iso model (#9) relative to Iso map (#10) coordinates:
Matrix rotation and translation
0.99999998 -0.00017277 0.00001329 0.02557156
0.00017277 0.99999998 -0.00000110 -0.02725386
-0.00001329 0.00000111 0.99999999 0.01514239
Axis 0.00637037 0.07667921 0.99703546
Axis point 163.60790796 147.51235147 0.00000000
Rotation angle (degrees) 0.00992823
Shift along axis 0.01317060
> fitmap #9 inMap #10
Fit molecule Iso model (#9) to map Iso map (#10) using 21352 atoms
average map value = 0.2332, steps = 24
shifted from previous position = 0.000123
rotated from previous position = 0.000491 degrees
atoms outside contour = 10333, contour level = 0.20338
Position of Iso model (#9) relative to Iso map (#10) coordinates:
Matrix rotation and translation
0.99999998 -0.00018123 0.00001213 0.02718142
0.00018123 0.99999998 -0.00000048 -0.02883601
-0.00001213 0.00000048 0.99999999 0.01507423
Axis 0.00262207 0.06676657 0.99776518
Axis point 163.98414209 149.77708768 0.00000000
Rotation angle (degrees) 0.01040699
Shift along axis 0.01318653
> select clear
> hide #!9 models
> hide #!10 models
> show #!1 models
> show #!3 models
> show #!5 models
> show #!7 models
> show #!9 models
> ui tool show Matchmaker
> help help:user/tools/matchmaker.html
> matchmaker #3/A#3/B#3/C#3/D to #1/A#1/B#1/C#1/D pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Apo model, chain A (#1) with Citronellal model, chain A (#3),
sequence alignment score = 2828.6
Matchmaker Apo model, chain B (#1) with Citronellal model, chain B (#3),
sequence alignment score = 2842.4
Matchmaker Apo model, chain C (#1) with Citronellal model, chain C (#3),
sequence alignment score = 2835.2
Matchmaker Apo model, chain D (#1) with Citronellal model, chain D (#3),
sequence alignment score = 2833.4
RMSD between 1711 pruned atom pairs is 1.043 angstroms; (across all 2420
pairs: 2.870)
> matchmaker #5/A#5/B#5/C#5/D to #1/A#1/B#1/C#1/D pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Apo model, chain A (#1) with Lin model, chain A (#5), sequence
alignment score = 2797.9
Matchmaker Apo model, chain B (#1) with Lin model, chain B (#5), sequence
alignment score = 2812.3
Matchmaker Apo model, chain C (#1) with Lin model, chain C (#5), sequence
alignment score = 2807.5
Matchmaker Apo model, chain D (#1) with Lin model, chain D (#5), sequence
alignment score = 2809.3
RMSD between 1885 pruned atom pairs is 0.886 angstroms; (across all 2412
pairs: 2.497)
> matchmaker #5/A#5/B#5/C#5/D to #1/A#1/B#1/C#1/D pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Apo model, chain A (#1) with Lin model, chain A (#5), sequence
alignment score = 2797.9
Matchmaker Apo model, chain B (#1) with Lin model, chain B (#5), sequence
alignment score = 2812.3
Matchmaker Apo model, chain C (#1) with Lin model, chain C (#5), sequence
alignment score = 2807.5
Matchmaker Apo model, chain D (#1) with Lin model, chain D (#5), sequence
alignment score = 2809.3
RMSD between 1885 pruned atom pairs is 0.886 angstroms; (across all 2412
pairs: 2.497)
> matchmaker #7/A#7/B#7/C#7/D to #1/A#1/B#1/C#1/D pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Apo model, chain A (#1) with Citral model, chain A (#7), sequence
alignment score = 2744.7
Matchmaker Apo model, chain B (#1) with Citral model, chain B (#7), sequence
alignment score = 2744.7
Matchmaker Apo model, chain C (#1) with Citral model, chain C (#7), sequence
alignment score = 2744.7
Matchmaker Apo model, chain D (#1) with Citral model, chain D (#7), sequence
alignment score = 2744.7
RMSD between 884 pruned atom pairs is 1.181 angstroms; (across all 2420 pairs:
37.641)
> matchmaker #9/A#9/B#9/C#9/D to #1/A#1/B#1/C#1/D pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Apo model, chain A (#1) with Iso model, chain A (#9), sequence
alignment score = 2819
Matchmaker Apo model, chain B (#1) with Iso model, chain B (#9), sequence
alignment score = 2829.2
Matchmaker Apo model, chain C (#1) with Iso model, chain C (#9), sequence
alignment score = 2829.2
Matchmaker Apo model, chain D (#1) with Iso model, chain D (#9), sequence
alignment score = 2816
RMSD between 1630 pruned atom pairs is 1.223 angstroms; (across all 2420
pairs: 2.839)
> fitmap #9 inMap #10
Fit molecule Iso model (#9) to map Iso map (#10) using 21352 atoms
average map value = 0.2332, steps = 60
shifted from previous position = 0.338
rotated from previous position = 0.217 degrees
atoms outside contour = 10332, contour level = 0.20338
Position of Iso model (#9) relative to Iso map (#10) coordinates:
Matrix rotation and translation
0.00009769 0.99999999 -0.00000197 -0.01536587
-0.99999999 0.00009769 -0.00001567 322.54674636
-0.00001567 0.00000197 0.99999999 -0.00183522
Axis 0.00000882 0.00000685 -1.00000000
Axis point 161.28144582 161.28105688 0.00000000
Rotation angle (degrees) 89.99440277
Shift along axis 0.00404457
> fitmap #7 inMap #8
Fit molecule Citral model (#7) to map Citral map (#8) using 21220 atoms
average map value = 0.1828, steps = 64
shifted from previous position = 0.679
rotated from previous position = 0.377 degrees
atoms outside contour = 3175, contour level = 0.074338
Position of Citral model (#7) relative to Citral map (#8) coordinates:
Matrix rotation and translation
0.99999998 0.00015525 -0.00008269 -0.01142795
-0.00015525 0.99999998 -0.00000347 0.02591034
0.00008269 0.00000348 0.99999999 -0.02056628
Axis 0.01974012 -0.47000325 -0.88244392
Axis point 184.27766926 74.35759864 0.00000000
Rotation angle (degrees) 0.01008033
Shift along axis 0.00574506
> fitmap #5 inMap #6
Fit molecule Lin model (#5) to map Lin map (#6) using 20572 atoms
average map value = 0.5198, steps = 48
shifted from previous position = 0.169
rotated from previous position = 0.146 degrees
atoms outside contour = 11579, contour level = 0.50595
Position of Lin model (#5) relative to Lin map (#6) coordinates:
Matrix rotation and translation
0.02805824 0.99960621 -0.00040081 -3.50162073
-0.99960607 0.02805850 0.00065934 251.97176399
0.00067033 0.00038215 0.99999970 7.32927112
Axis -0.00013865 -0.00053578 -0.99999985
Axis point 127.81848001 127.78509490 0.00000000
Rotation angle (degrees) 88.39217150
Shift along axis -7.46378535
> fitmap #3 inMap #4
Fit molecule Citronellal model (#3) to map Citronellal map (#4) using 21236
atoms
average map value = 0.5172, steps = 44
shifted from previous position = 0.155
rotated from previous position = 0.187 degrees
atoms outside contour = 10219, contour level = 0.45607
Position of Citronellal model (#3) relative to Citronellal map (#4)
coordinates:
Matrix rotation and translation
-0.00018997 0.99999998 0.00002740 0.01999437
-0.99999998 -0.00018997 -0.00000005 256.82523742
-0.00000004 -0.00002740 1.00000000 0.02107429
Axis -0.00001368 0.00001372 -1.00000000
Axis point 128.39822322 128.40262369 0.00000000
Rotation angle (degrees) 90.01088468
Shift along axis -0.01755045
Average map value = 0.5172 for 21236 atoms, 10219 outside contour
> fitmap #3 inMap #4
Fit molecule Citronellal model (#3) to map Citronellal map (#4) using 21236
atoms
average map value = 0.5172, steps = 24
shifted from previous position = 0.00309
rotated from previous position = 0.00404 degrees
atoms outside contour = 10212, contour level = 0.45607
Position of Citronellal model (#3) relative to Citronellal map (#4)
coordinates:
Matrix rotation and translation
-0.00012663 0.99999999 0.00003827 0.01229683
-0.99999999 -0.00012663 -0.00002896 256.81897893
-0.00002895 -0.00003827 1.00000000 0.02846309
Axis -0.00000465 0.00003361 -1.00000000
Axis point 128.39937887 128.40334235 0.00000000
Rotation angle (degrees) 90.00725532
Shift along axis -0.01983145
> hide #!9 models
> hide #!7 models
> hide #!5 models
> hide #!3 models
> hide #!1 models
> show #!1 models
> show #!3 models
> show #!5 models
> show #!7 models
> show #!9 models
> select #1/A#3/A#5/A#7/A#9/A
26082 atoms, 26594 bonds, 10 pseudobonds, 3112 residues, 10 models selected
> select clear
> save "D:/Yao Lab/Data/Structures of hTRPV3/h & mTRPV3_Essential
> Oil_Structure/Paper Writing/202403_hV3_Essential Oil_Figures/ChimeraX
> sessions/2400309_hV3_5MapsStructuresAligned.cxs" includeMaps true
> volume #2 color #bababa
> volume #4 color #bababa
> volume #6 color #bababa
> volume #8 color #bababa
> volume #10 color #bababa
> volume #10 level 0.3055
> volume #8 level 0.2003
> hide #!10 models
> hide #!9 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
> hide #!5 models
> hide #!3 models
> hide #!4 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!3 models
> show #!4 models
> hide #!4 models
> hide #!3 models
> show #!5 models
> show #!6 models
> volume #6 level 0.3052
> volume #6 level 0.4142
> volume #6 level 0.3166
> hide #!6 models
> hide #!5 models
> show #!7 models
> show #!8 models
> volume #8 level 0.1184
> volume #8 level 0.09015
> hide #!8 models
> hide #!7 models
> show #!9 models
> show #!10 models
> volume #10 level 0.0863
> volume #10 level 0.1432
> hide #!9 models
> hide #!10 models
> show #!1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> show #!7 models
> show #!8 models
> show #!9 models
> show #!10 models
> select ::name="POV"
4484 atoms, 4360 bonds, 124 residues, 5 models selected
> color sel orange
> select clear
> ui tool show "Volume Viewer"
> select add #1
20864 atoms, 21265 bonds, 8 pseudobonds, 2476 residues, 2 models selected
> select add #3
42100 atoms, 42914 bonds, 16 pseudobonds, 4992 residues, 4 models selected
> select add #5
62672 atoms, 63874 bonds, 24 pseudobonds, 7436 residues, 6 models selected
> select add #7
83892 atoms, 85540 bonds, 35 pseudobonds, 9952 residues, 8 models selected
[deleted to fit within ticket limits]
> select clear
[Repeated 2 time(s)]
> select #7/B:679@CA
1 atom, 1 residue, 1 model selected
> select add #7/B:652@CA
2 atoms, 2 residues, 1 model selected
> select add #1/A:679@CA
3 atoms, 3 residues, 2 models selected
> select add #1/A:652@CA
4 atoms, 4 residues, 2 models selected
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 246, in _create_angle
self.angle_table.setItem(num_rows, 4,
QTableWidgetItem(self._angle_text(sel_atoms)))
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
value: None default: None
> define axis #1 perHelix true name "helix axes"
Axis 'Apo model #1/helix axes/chain A helix 1' centered at [168.16908646
92.08204497 84.07253032] with direction [-0.5852965 0.81012288 -0.03359951],
radius 1.75599, and length 13.4548
Axis 'Apo model #1/helix axes/chain A helix 2' centered at [166.28064164
92.74057384 74.62682384] with direction [ 0.31142192 -0.9446177 -0.10350746],
radius 1.83236, and length 15.1493
Axis 'Apo model #1/helix axes/chain A helix 3' centered at [169.32264408
81.42769552 74.62868912] with direction [ 0.39055915 -0.92055781 0.00607276],
radius 1.79889, and length 8.16324
Axis 'Apo model #1/helix axes/chain A helix 4' centered at [156.99275509
93.05002151 87.33838083] with direction [-0.30069737 0.87164906 0.38705169],
radius 1.67429, and length 11.8792
Axis 'Apo model #1/helix axes/chain A helix 5' centered at [155.35084785
90.21170764 76.59209117] with direction [-0.06950568 0.9697903 0.23382843],
radius 1.88163, and length 19.9463
Axis 'Apo model #1/helix axes/chain A helix 6' centered at [153.56341436
80.12021912 82.74128725] with direction [0.43371218 0.35360978 0.82876647],
radius 1.56214, and length 5.5301
Axis 'Apo model #1/helix axes/chain A helix 7' centered at [148.13607146
92.97127064 90.44193395] with direction [-0.37401449 0.90212043 0.21515551],
radius 1.74461, and length 11.3507
Axis 'Apo model #1/helix axes/chain A helix 8' centered at [145.13220236
93.94189575 81.96091347] with direction [ 0.1588832 -0.96192524 -0.22238697],
radius 1.73783, and length 10.9299
Axis 'Apo model #1/helix axes/chain A helix 9' centered at [144.48906279
86.22998774 80.35956214] with direction [-0.44312656 0.69786886 0.56268811],
radius 1.14676, and length 5.7932
Axis 'Apo model #1/helix axes/chain A helix 10' centered at [149.71338255
98.08626121 110.25552406] with direction [ 0.8350064 -0.23889548 -0.49567455],
radius 1.11696, and length 6.05892
Axis 'Apo model #1/helix axes/chain A helix 11' centered at [139.3372455
93.48658014 95.1532863 ] with direction [-0.30834657 0.90173242 0.30298685],
radius 1.74201, and length 10.987
Axis 'Apo model #1/helix axes/chain A helix 12' centered at [135.15379382
93.41933538 86.72007311] with direction [-0.25337315 -0.92797799 -0.27323779],
radius 1.86732, and length 13.9474
Axis 'Apo model #1/helix axes/chain A helix 13' centered at [134.11700025
92.4390426 103.23445483] with direction [ 0.22108907 0.95744398 -0.18552805],
radius 1.14129, and length 5.85834
Axis 'Apo model #1/helix axes/chain A helix 14' centered at [127.34145711
95.04837895 94.97882583] with direction [-0.35975513 -0.80666057 -0.46890827],
radius 1.8695, and length 18.2448
Axis 'Apo model #1/helix axes/chain A helix 15' centered at [128.34536723
93.17642364 111.28134386] with direction [0.40837222 0.61347318 0.67593105],
radius 1.85098, and length 11.7513
Axis 'Apo model #1/helix axes/chain A helix 16' centered at [123.47830531
99.49927012 106.44574327] with direction [-0.76050635 -0.54511063
-0.35282361], radius 1.84585, and length 12.0575
Axis 'Apo model #1/helix axes/chain A helix 17' centered at [122.88759373
93.92925317 118.82641134] with direction [0.43157163 0.58481685 0.6868298 ],
radius 1.76551, and length 9.7953
Axis 'Apo model #1/helix axes/chain A helix 18' centered at [122.64906607
103.40864995 116.32264385] with direction [-0.69066566 -0.6395065
-0.33765719], radius 1.58905, and length 5.71308
Axis 'Apo model #1/helix axes/chain A helix 19' centered at [111.07438503
98.37346102 119.57203432] with direction [-0.46513239 -0.25497942 0.84772481],
radius 2.08523, and length 21.0381
Axis 'Apo model #1/helix axes/chain A helix 20' centered at [110.45548402
97.14349232 143.22678165] with direction [0.23854981 0.0593202 0.96931682],
radius 1.88523, and length 27.1379
Axis 'Apo model #1/helix axes/chain A helix 21' centered at [113.81923176
98.40473714 158.6135733 ] with direction [-0.12899382 -0.61837442 0.77522491],
radius 1.13315, and length 5.92455
Axis 'Apo model #1/helix axes/chain A helix 22' centered at [106.0096098
89.59295328 161.15118596] with direction [ 0.84221135 -0.12582857
-0.52425872], radius 1.08082, and length 6.36278
Axis 'Apo model #1/helix axes/chain A helix 23' centered at [115.99143953
87.9903718 149.98331855] with direction [ 0.65876212 -0.14494524 -0.73825696],
radius 1.91749, and length 23.9081
Axis 'Apo model #1/helix axes/chain A helix 24' centered at [126.10624096
86.85921144 137.93324718] with direction [ 0.17356745 0.47681807 -0.86169534],
radius 1.11696, and length 6.07331
Axis 'Apo model #1/helix axes/chain A helix 25' centered at [124.93893306
91.59651688 151.44128598] with direction [-0.09386171 -0.41826226 0.9034637 ],
radius 1.83466, and length 30.494
Axis 'Apo model #1/helix axes/chain A helix 26' centered at [123.65794319
99.20849088 154.97398579] with direction [-0.35239671 0.47455524 -0.8066064 ],
radius 1.83256, and length 21.4826
Axis 'Apo model #1/helix axes/chain A helix 27' centered at [117.93789712
103.94140196 140.69929154] with direction [-0.47967762 0.24920444
-0.84131238], radius 1.46083, and length 11.872
Axis 'Apo model #1/helix axes/chain A helix 28' centered at [115.24601465
111.27673016 133.13814477] with direction [ 0.76464129 -0.63036158 0.1340447
], radius 1.12895, and length 6.08218
Axis 'Apo model #1/helix axes/chain A helix 29' centered at [126.64734613
111.89434359 135.29612711] with direction [0.96768424 0.06767992 0.24291281],
radius 1.88569, and length 18.2773
Axis 'Apo model #1/helix axes/chain A helix 30' centered at [145.88900625
118.20356017 152.17871984] with direction [0.49360587 0.22264697 0.84070302],
radius 1.8642, and length 29.2657
Axis 'Apo model #1/helix axes/chain A helix 31' centered at [142.27534683
117.90191447 161.28221897] with direction [-0.63960176 0.63943558
-0.42665177], radius 1.80422, and length 12.0143
Axis 'Apo model #1/helix axes/chain A helix 32' centered at [136.21436191
122.39495577 157.42197898] with direction [-0.2950115 0.95056441 -0.09693049],
radius 1.16103, and length 5.72794
Axis 'Apo model #1/helix axes/chain A helix 33' centered at [145.76941107
129.97972995 154.9567434 ] with direction [-0.60276267 -0.23354852
-0.76297592], radius 2.0109, and length 24.5636
Axis 'Apo model #1/helix axes/chain A helix 34' centered at [132.51001335
122.86178994 135.84020603] with direction [-0.49377372 -0.37873785 -0.7827804
], radius 1.94361, and length 25.263
Axis 'Apo model #1/helix axes/chain A helix 35' centered at [123.5803796
113.7043296 125.19367558] with direction [-0.35980053 -0.79025342 0.49602733],
radius 1.09142, and length 6.33899
Axis 'Apo model #1/helix axes/chain A helix 36' centered at [117.86657064
97.03081109 127.76990776] with direction [-0.31875101 -0.93626163 0.1476887 ],
radius 1.82179, and length 24.3959
Axis 'Apo model #1/helix axes/chain B helix 1' centered at [164.72629282
168.16989496 84.06657485] with direction [-0.81006712 -0.58537355
-0.03360167], radius 1.756, and length 13.4547
Axis 'Apo model #1/helix axes/chain B helix 2' centered at [164.06922844
166.28038571 74.62084196] with direction [ 0.94460237 0.31150256 -0.10340462],
radius 1.83245, and length 15.1493
Axis 'Apo model #1/helix axes/chain B helix 3' centered at [175.38184847
169.32371487 74.6238928 ] with direction [0.92053784 0.39060582 0.00609786],
radius 1.79897, and length 8.16314
Axis 'Apo model #1/helix axes/chain B helix 4' centered at [163.75914884
156.99381263 87.33319077] with direction [-0.87166846 -0.30070595 0.38700134],
radius 1.67424, and length 11.8788
Axis 'Apo model #1/helix axes/chain B helix 5' centered at [166.59881584
155.35112308 76.58756641] with direction [ 0.96981221 0.06957406 -0.2337172 ],
radius 1.8816, and length 19.9463
Axis 'Apo model #1/helix axes/chain B helix 6' centered at [176.68988463
153.56530736 82.73787357] with direction [ 0.3536086 -0.43376186 -0.82874098],
radius 1.56219, and length 5.52927
Axis 'Apo model #1/helix axes/chain B helix 7' centered at [163.83803176
148.13710399 90.43757923] with direction [-0.90213177 -0.37403763 0.21506773],
radius 1.74469, and length 11.3508
Axis 'Apo model #1/helix axes/chain B helix 8' centered at [162.86931464
145.13252452 81.95662824] with direction [ 0.96194099 0.15900101 -0.22223461],
radius 1.73794, and length 10.9296
Axis 'Apo model #1/helix axes/chain B helix 9' centered at [170.58104354
144.4899311 80.35670395] with direction [ 0.6978652 0.44306439 -0.5627416 ],
radius 1.14672, and length 5.7932
Axis 'Apo model #1/helix axes/chain B helix 10' centered at [158.72080795
149.71595564 110.25037974] with direction [-0.23898547 -0.83496555
0.49569998], radius 1.11691, and length 6.05815
Axis 'Apo model #1/helix axes/chain B helix 11' centered at [163.32371391
139.33886423 95.14961261] with direction [-0.90172854 -0.30851181 0.30283017],
radius 1.74206, and length 10.9869
Axis 'Apo model #1/helix axes/chain B helix 12' centered at [163.39207331
135.15454289 86.71689399] with direction [ 0.92805164 -0.25328924
-0.27306542], radius 1.86734, and length 13.9471
Axis 'Apo model #1/helix axes/chain B helix 13' centered at [164.37023768
134.11950786 103.23166779] with direction [-0.95746747 0.22089044
-0.18564334], radius 1.1413, and length 5.85907
Axis 'Apo model #1/helix axes/chain B helix 14' centered at [161.76275227
127.3428672 94.9761728 ] with direction [ 0.80676004 -0.35969778 -0.46878113],
radius 1.86949, and length 18.2449
Axis 'Apo model #1/helix axes/chain B helix 15' centered at [163.63245477
128.34846819 111.27895998] with direction [-0.61363855 0.40837639 0.67577841],
radius 1.85096, and length 11.7524
Axis 'Apo model #1/helix axes/chain B helix 16' centered at [157.31115157
123.4801912 106.44269525] with direction [ 0.5452597 -0.76048954 -0.35262943],
radius 1.84579, and length 12.0576
Axis 'Apo model #1/helix axes/chain B helix 17' centered at [162.87935518
122.89140094 118.82405842] with direction [-0.58493574 0.43155801 0.68673711],
radius 1.76542, and length 9.79509
Axis 'Apo model #1/helix axes/chain B helix 18' centered at [153.40003079
122.65182722 116.31935822] with direction [ 0.63961036 -0.69064013
-0.33751266], radius 1.58885, and length 5.71304
Axis 'Apo model #1/helix axes/chain B helix 19' centered at [158.43637043
111.07769706 119.57039751] with direction [ 0.25491839 -0.46502994
0.84779937], radius 2.08529, and length 21.0373
Axis 'Apo model #1/helix axes/chain B helix 20' centered at [159.66323948
110.46107144 143.22541618] with direction [-0.05948288 0.23863727 0.96928532],
radius 1.88521, and length 27.1378
Axis 'Apo model #1/helix axes/chain B helix 21' centered at [158.39972283
113.82610185 158.6117636 ] with direction [ 0.61828405 -0.12891921 0.7753094
], radius 1.13312, and length 5.92384
Axis 'Apo model #1/helix axes/chain B helix 22' centered at [167.21204847
106.01761083 161.15118496] with direction [-0.12582978 -0.84221086
0.52425922], radius 1.08083, and length 6.36278
Axis 'Apo model #1/helix axes/chain B helix 23' centered at [168.81478539
115.99859317 149.98273272] with direction [ 0.14497625 0.65871107
-0.73829643], radius 1.91746, and length 23.9076
Axis 'Apo model #1/helix axes/chain B helix 24' centered at [169.94659477
126.11258949 137.93201918] with direction [ 0.47661694 -0.17334533
0.86185131], radius 1.1171, and length 6.07338
Axis 'Apo model #1/helix axes/chain B helix 25' centered at [165.20756159
124.94592178 151.43923018] with direction [ 0.41815123 -0.09373917
0.90352782], radius 1.83463, and length 30.4935
Axis 'Apo model #1/helix axes/chain B helix 26' centered at [157.59534884
123.664466 154.97127737] with direction [-0.47442519 -0.35252507 -0.80662681],
radius 1.83256, and length 21.4827
Axis 'Apo model #1/helix axes/chain B helix 27' centered at [152.86487227
117.94257232 140.69629846] with direction [-0.24902335 -0.47976997
-0.84131335], radius 1.46091, and length 11.8718
Axis 'Apo model #1/helix axes/chain B helix 28' centered at [145.53077026
115.24913612 133.13416385] with direction [0.63022609 0.76475323 0.13404314],
radius 1.12893, and length 6.08161
Axis 'Apo model #1/helix axes/chain B helix 29' centered at [144.91169338
126.65055648 135.291354 ] with direction [-0.06781421 0.96769985 0.24281315],
radius 1.88579, and length 18.2772
Axis 'Apo model #1/helix axes/chain B helix 30' centered at [138.59817584
145.89305778 152.17121058] with direction [-0.22281345 0.49366023 0.840627 ],
radius 1.86416, and length 29.2654
Axis 'Apo model #1/helix axes/chain B helix 31' centered at [138.89911467
142.28051796 161.27535536] with direction [-0.63930532 -0.63973657
-0.42664486], radius 1.80416, and length 12.0146
Axis 'Apo model #1/helix axes/chain B helix 32' centered at [134.40704268
136.21836061 157.41497836] with direction [-0.95056475 -0.29501055
-0.09693003], radius 1.16103, and length 5.72793
Axis 'Apo model #1/helix axes/chain B helix 33' centered at [126.82163588
145.77255878 154.94790808] with direction [ 0.23371345 -0.60280117
-0.76289499], radius 2.0109, and length 24.5635
Axis 'Apo model #1/helix axes/chain B helix 34' centered at [133.94342468
132.51225039 135.83354107] with direction [ 0.37890055 -0.49379874
-0.78268588], radius 1.94368, and length 25.2629
Axis 'Apo model #1/helix axes/chain B helix 35' centered at [143.10382403
123.58230057 125.1889132 ] with direction [ 0.79020721 -0.35980712
0.49609616], radius 1.09137, and length 6.33949
Axis 'Apo model #1/helix axes/chain B helix 36' centered at [159.7771974
117.87072178 127.76788838] with direction [ 0.93627392 -0.31864125
0.14784753], radius 1.82178, and length 24.3958
Axis 'Apo model #1/helix axes/chain C helix 1' centered at [ 88.63317123
164.72733629 84.06637091] with direction [ 0.58541997 -0.81003228
-0.03363267], radius 1.75591, and length 13.4549
Axis 'Apo model #1/helix axes/chain C helix 2' centered at [ 90.52295469
164.07033345 74.62090732] with direction [-0.31151739 0.94459734 -0.10340595],
radius 1.83235, and length 15.1493
Axis 'Apo model #1/helix axes/chain C helix 3' centered at [ 87.47961336
175.38283712 74.62381901] with direction [-0.39065993 0.92051509 0.00606548],
radius 1.79879, and length 8.16262
Axis 'Apo model #1/helix axes/chain C helix 4' centered at [ 99.80903585
163.76018271 87.33383134] with direction [ 0.30074582 -0.87166388 0.38698066],
radius 1.67437, and length 11.8791
Axis 'Apo model #1/helix axes/chain C helix 5' centered at [101.45199206
166.60080847 76.5879781 ] with direction [ 0.06957649 -0.96981781 0.23369324],
radius 1.88163, and length 19.9465
Axis 'Apo model #1/helix axes/chain C helix 6' centered at [103.23742936
176.69120658 82.73900803] with direction [-0.43375834 -0.35391 0.82861415],
radius 1.56225, and length 5.53028
Axis 'Apo model #1/helix axes/chain C helix 7' centered at [108.66512735
163.83980176 90.43854854] with direction [ 0.37410041 -0.90211332 0.2150359 ],
radius 1.74465, and length 11.3508
Axis 'Apo model #1/helix axes/chain C helix 8' centered at [111.67034638
162.87017249 81.95792429] with direction [-0.15897109 0.96191909 -0.22235074],
radius 1.7378, and length 10.9295
Axis 'Apo model #1/helix axes/chain C helix 9' centered at [112.31293536
170.58301025 80.35756335] with direction [ 0.4431278 -0.69786817 0.56268798],
radius 1.14676, and length 5.7932
Axis 'Apo model #1/helix axes/chain C helix 10' centered at [107.08530633
158.72179262 110.25118292] with direction [-0.83498236 0.23890038
-0.49571268], radius 1.11696, and length 6.05815
Axis 'Apo model #1/helix axes/chain C helix 11' centered at [117.46325406
163.32474541 95.15111395] with direction [ 0.30846746 -0.9017042 0.30294779],
radius 1.74192, and length 10.9869
Axis 'Apo model #1/helix axes/chain C helix 12' centered at [121.64807769
163.39411935 86.71856007] with direction [ 0.25333252 0.92804122 -0.27306067],
radius 1.86719, and length 13.947
Axis 'Apo model #1/helix axes/chain C helix 13' centered at [122.68220812
164.37176002 103.23304954] with direction [-0.22090367 -0.95744996 -0.1857179
], radius 1.14141, and length 5.858
Axis 'Apo model #1/helix axes/chain C helix 14' centered at [129.45925424
161.76420145 94.97820934] with direction [ 0.3597289 0.80675958 -0.46875804],
radius 1.86949, and length 18.2441
Axis 'Apo model #1/helix axes/chain C helix 15' centered at [128.45275497
163.63398402 111.28066732] with direction [-0.40841289 -0.61359903
0.67579223], radius 1.85097, and length 11.751
Axis 'Apo model #1/helix axes/chain C helix 16' centered at [133.32110923
157.31215262 106.44515966] with direction [ 0.76049686 0.54523676
-0.35264913], radius 1.84576, and length 12.0567
Axis 'Apo model #1/helix axes/chain C helix 17' centered at [133.90942479
162.88080431 118.826854 ] with direction [-0.43154792 -0.58501465 0.68667623],
radius 1.76551, and length 9.7956
Axis 'Apo model #1/helix axes/chain C helix 18' centered at [134.14904136
153.40133955 116.32178759] with direction [ 0.69050644 0.63967235
-0.33766868], radius 1.58908, and length 5.7128
Axis 'Apo model #1/helix axes/chain C helix 19' centered at [145.72301638
158.43768667 119.57314883] with direction [0.46499316 0.25491241 0.84782134],
radius 2.0852, and length 21.038
Axis 'Apo model #1/helix axes/chain C helix 20' centered at [146.33838162
159.66445549 143.22848736] with direction [-0.23868542 -0.05947667
0.96927385], radius 1.88528, and length 27.1381
Axis 'Apo model #1/helix axes/chain C helix 21' centered at [142.97248603
158.40067655 158.61420459] with direction [0.12891209 0.61820034 0.77537734],
radius 1.13323, and length 5.92461
Axis 'Apo model #1/helix axes/chain C helix 22' centered at [150.78080675
167.21304613 161.15449111] with direction [-0.84210001 0.12585384
-0.52443149], radius 1.08076, and length 6.3625
Axis 'Apo model #1/helix axes/chain C helix 23' centered at [140.80035551
168.81610115 149.98520773] with direction [-0.65866599 0.14497814
-0.73833627], radius 1.91753, and length 23.9084
Axis 'Apo model #1/helix axes/chain C helix 24' centered at [130.68727623
169.94780781 137.93402357] with direction [-0.17333214 -0.47677589
-0.86176605], radius 1.11693, and length 6.07389
Axis 'Apo model #1/helix axes/chain C helix 25' centered at [131.85311171
165.20870517 151.44139418] with direction [0.09368265 0.41815105 0.90353376],
radius 1.83469, and length 30.4937
Axis 'Apo model #1/helix axes/chain C helix 26' centered at [133.13457397
157.59637551 154.97331024] with direction [ 0.3525514 -0.4744214 -0.80661754],
radius 1.83254, and length 21.4827
Axis 'Apo model #1/helix axes/chain C helix 27' centered at [138.85707768
152.86596293 140.69883322] with direction [ 0.47983961 -0.2490656
-0.84126112], radius 1.46106, and length 11.8715
Axis 'Apo model #1/helix axes/chain C helix 28' centered at [141.55098547
145.5322716 133.137144 ] with direction [-0.76464159 0.63036176 0.13404211],
radius 1.12895, and length 6.08218
Axis 'Apo model #1/helix axes/chain C helix 29' centered at [130.14930607
144.91286313 135.29322046] with direction [-0.96771406 -0.06784203
0.24274874], radius 1.88561, and length 18.2769
Axis 'Apo model #1/helix axes/chain C helix 30' centered at [110.90592972
138.59916559 152.1722459 ] with direction [-0.49370442 -0.22282123
0.84059898], radius 1.8642, and length 29.2655
Axis 'Apo model #1/helix axes/chain C helix 31' centered at [114.5182713
138.89999321 161.27628401] with direction [ 0.63975536 -0.63928779
-0.42664295], radius 1.80418, and length 12.0146
Axis 'Apo model #1/helix axes/chain C helix 32' centered at [120.58027179
134.40795975 157.4163708 ] with direction [ 0.2951765 -0.95049667
-0.09709228], radius 1.16105, and length 5.72838
Axis 'Apo model #1/helix axes/chain C helix 33' centered at [111.02637309
126.82271899 154.94867364] with direction [ 0.60284595 0.2337164 -0.76285871],
radius 2.01081, and length 24.5636
Axis 'Apo model #1/helix axes/chain C helix 34' centered at [124.2878043
133.94476965 135.83508483] with direction [ 0.4938459 0.37888732 -0.78266252],
radius 1.94369, and length 25.2627
Axis 'Apo model #1/helix axes/chain C helix 35' centered at [133.21795707
143.10456207 125.19100395] with direction [0.35959693 0.79022879 0.49621418],
radius 1.09158, and length 6.33905
Axis 'Apo model #1/helix axes/chain C helix 36' centered at [138.92949792
159.77832131 127.7703022 ] with direction [0.31862145 0.93627829 0.14786254],
radius 1.82182, and length 24.3956
Axis 'Apo model #1/helix axes/chain D helix 1' centered at [92.06976701
88.6297922 84.07027556] with direction [ 0.8101067 0.58531409 -0.0336831 ],
radius 1.75607, and length 13.454
Axis 'Apo model #1/helix axes/chain D helix 2' centered at [92.72704392
90.51938167 74.62471685] with direction [-0.94463498 -0.31141543 -0.10336922],
radius 1.83236, and length 15.1497
Axis 'Apo model #1/helix axes/chain D helix 3' centered at [81.41412278
87.47683229 74.62781529] with direction [-0.92053054 -0.39062431 0.00601373],
radius 1.79878, and length 8.16251
Axis 'Apo model #1/helix axes/chain D helix 4' centered at [93.03794607
99.806234 87.33680249] with direction [0.8716947 0.30070957 0.3869394 ],
radius 1.67437, and length 11.8789
Axis 'Apo model #1/helix axes/chain D helix 5' centered at [ 90.19825637
101.44904488 76.59127675] with direction [-0.96982271 -0.06953543
-0.23368511], radius 1.88159, and length 19.9463
Axis 'Apo model #1/helix axes/chain D helix 6' centered at [ 80.10711457
103.23569525 82.74186894] with direction [-0.35360743 0.43376133 -0.82874176],
radius 1.56219, and length 5.52927
Axis 'Apo model #1/helix axes/chain D helix 7' centered at [ 92.95925002
108.66272631 90.44132824] with direction [0.90214372 0.37405233 0.21499203],
radius 1.74463, and length 11.3504
Axis 'Apo model #1/helix axes/chain D helix 8' centered at [ 93.92865609
111.66698532 81.96043812] with direction [-0.9619501 -0.1589074 -0.22226212],
radius 1.73781, and length 10.9296
Axis 'Apo model #1/helix axes/chain D helix 9' centered at [ 86.21611183
112.30982305 80.36024603] with direction [-0.69802163 -0.44313755
-0.56248992], radius 1.14658, and length 5.79365
Axis 'Apo model #1/helix axes/chain D helix 10' centered at [ 98.07734611
107.08389905 110.2541359 ] with direction [0.23883524 0.83498586 0.49573818],
radius 1.11681, and length 6.05902
Axis 'Apo model #1/helix axes/chain D helix 11' centered at [ 93.47485353
117.46078378 95.1533601 ] with direction [0.90176071 0.30832392 0.30292571],
radius 1.74195, and length 10.9876
Axis 'Apo model #1/helix axes/chain D helix 12' centered at [ 93.40582583
121.645324 86.72031239] with direction [-0.9280143 0.25337933 -0.27310871],
radius 1.86729, and length 13.9474
Axis 'Apo model #1/helix axes/chain D helix 13' centered at [ 92.42839862
122.68041219 103.23490258] with direction [ 0.95746573 -0.22080769
-0.18575072], radius 1.14138, and length 5.85795
Axis 'Apo model #1/helix axes/chain D helix 14' centered at [ 95.03605966
129.45665157 94.9796337 ] with direction [-0.80674963 0.35975846 -0.46875247],
radius 1.86943, and length 18.2453
Axis 'Apo model #1/helix axes/chain D helix 15' centered at [ 93.16664691
128.4516306 111.28230047] with direction [ 0.61361489 -0.4083508 0.67581535],
radius 1.85108, and length 11.7516
Axis 'Apo model #1/helix axes/chain D helix 16' centered at [ 99.48873868
133.31891268 106.44637341] with direction [-0.54517443 0.76049785
-0.35274334], radius 1.84578, and length 12.0575
Axis 'Apo model #1/helix axes/chain D helix 17' centered at [ 93.92022029
133.90844765 118.82787591] with direction [ 0.58497275 -0.43157984
0.68669187], radius 1.76553, and length 9.79559
Axis 'Apo model #1/helix axes/chain D helix 18' centered at [103.39964417
134.14757126 116.32281086] with direction [-0.63956962 0.69054126
-0.33779205], radius 1.5891, and length 5.71282
Axis 'Apo model #1/helix axes/chain D helix 19' centered at [ 98.36410431
145.7219894 119.57376254] with direction [-0.25489199 0.46504775 0.84779754],
radius 2.0852, and length 21.0383
Axis 'Apo model #1/helix axes/chain D helix 20' centered at [ 97.13741934
146.33892377 143.22854206] with direction [ 0.05946855 -0.23862294
0.96928973], radius 1.88522, and length 27.1375
Axis 'Apo model #1/helix axes/chain D helix 21' centered at [ 98.40103421
142.97374192 158.61484072] with direction [-0.61820467 0.1290246 0.77535517],
radius 1.13311, and length 5.92467
Axis 'Apo model #1/helix axes/chain D helix 22' centered at [ 89.58898461
150.78291162 161.15417259] with direction [0.1259406 0.84209379 0.52442064],
radius 1.08072, and length 6.36252
Axis 'Apo model #1/helix axes/chain D helix 23' centered at [ 87.98542593
140.80180794 149.98586971] with direction [-0.14503235 -0.65870376
-0.73829193], radius 1.91745, and length 23.9083
Axis 'Apo model #1/helix axes/chain D helix 24' centered at [ 86.85311483
130.68806449 137.93541224] with direction [-0.47681334 0.17340004 0.86173167],
radius 1.11686, and length 6.07307
Axis 'Apo model #1/helix axes/chain D helix 25' centered at [ 91.59214788
131.8544943 151.44283651] with direction [-0.41814695 0.09376188 0.90352744],
radius 1.83471, and length 30.4949
Axis 'Apo model #1/helix axes/chain D helix 26' centered at [ 99.20461041
133.13555017 154.97449031] with direction [ 0.4744403 0.3524643 -0.80664448],
radius 1.83263, and length 21.4826
Axis 'Apo model #1/helix axes/chain D helix 27' centered at [103.93522032
138.85683657 140.69952415] with direction [ 0.24905566 0.47978121
-0.84129738], radius 1.4608, and length 11.8719
Axis 'Apo model #1/helix axes/chain D helix 28' centered at [111.2694362
141.54986553 133.13772133] with direction [-0.63028601 -0.7647017 0.13405542],
radius 1.12904, and length 6.08156
Axis 'Apo model #1/helix axes/chain D helix 29' centered at [111.88780436
130.14858702 135.29458202] with direction [ 0.06775092 -0.96769919
0.24283348], radius 1.88571, and length 18.277
Axis 'Apo model #1/helix axes/chain D helix 30' centered at [118.20015759
110.90539946 152.17475021] with direction [ 0.22278732 -0.49366501
0.84063111], radius 1.86421, and length 29.2656
Axis 'Apo model #1/helix axes/chain D helix 31' centered at [117.89946739
114.51815287 161.27854968] with direction [ 0.6393263 0.63969486 -0.42667595],
radius 1.80424, and length 12.0146
Axis 'Apo model #1/helix axes/chain D helix 32' centered at [122.39195886
120.57964164 157.41798058] with direction [ 0.95056443 0.2950113 -0.0969309 ],
radius 1.16104, and length 5.72794
Axis 'Apo model #1/helix axes/chain D helix 33' centered at [129.97664915
111.02522817 154.95096882] with direction [-0.23367231 0.60281886
-0.76289362], radius 2.01087, and length 24.563
Axis 'Apo model #1/helix axes/chain D helix 34' centered at [122.85550667
124.28586157 135.83674264] with direction [-0.37887241 0.49382373
-0.78268373], radius 1.94362, and length 25.2629
Axis 'Apo model #1/helix axes/chain D helix 35' centered at [113.69654289
133.21600858 125.19205008] with direction [-0.79023832 0.35955846 0.49622687],
radius 1.09148, and length 6.33904
Axis 'Apo model #1/helix axes/chain D helix 36' centered at [ 97.0227962
138.92905829 127.77124659] with direction [-0.93625533 0.31869109 0.14785789],
radius 1.82179, and length 24.3965
> undo
value: None default: None
> define axis #7 perHelix true name "helix axes"
Axis 'Citral model #7/helix axes/chain A helix 1' centered at [167.92185338
173.68731113 87.15063813] with direction [ 0.02621797 0.99680167 -0.07549206],
radius 1.13939, and length 5.82006
Axis 'Citral model #7/helix axes/chain A helix 2' centered at [161.13356458
167.49254658 86.08009481] with direction [-0.68523908 -0.66971953 -0.2862222
], radius 1.79266, and length 14.7773
Axis 'Citral model #7/helix axes/chain A helix 3' centered at [174.49771526
171.50297446 76.12358483] with direction [0.84433863 0.17059285 0.50792751],
radius 1.90096, and length 9.73016
Axis 'Citral model #7/helix axes/chain A helix 4' centered at [175.57164124
167.11249146 89.02763206] with direction [-0.68362565 0.72794345 0.05248146],
radius 1.17029, and length 5.59022
Axis 'Citral model #7/helix axes/chain A helix 5' centered at [163.36519633
158.10425948 88.30889884] with direction [-0.85798326 -0.46313694 0.22219113],
radius 1.74165, and length 11.1677
Axis 'Citral model #7/helix axes/chain A helix 6' centered at [168.07145841
157.70985855 77.05587838] with direction [ 0.97118024 0.22515944 -0.07818029],
radius 1.83886, and length 20.278
Axis 'Citral model #7/helix axes/chain A helix 7' centered at [177.36076192
155.85965803 85.0354424 ] with direction [ 0.48596633 -0.33517195
-0.80715332], radius 1.55872, and length 5.4706
Axis 'Citral model #7/helix axes/chain A helix 8' centered at [165.64194021
149.62628597 90.31523746] with direction [-0.97224512 -0.23214171
-0.02914876], radius 1.82196, and length 7.86734
Axis 'Citral model #7/helix axes/chain A helix 9' centered at [163.98019894
146.19305469 81.66092022] with direction [ 0.95953859 0.24320912 -0.14189788],
radius 1.69222, and length 11.392
Axis 'Citral model #7/helix axes/chain A helix 10' centered at [171.90640733
146.05777325 80.74090386] with direction [ 0.82505015 0.49945837 -0.26426045],
radius 1.20445, and length 5.26187
Axis 'Citral model #7/helix axes/chain A helix 11' centered at [164.09870225
139.60867718 94.83137386] with direction [-0.91935497 -0.33142054 0.21200676],
radius 1.76915, and length 11.2335
Axis 'Citral model #7/helix axes/chain A helix 12' centered at [164.80544623
135.88636127 86.22007522] with direction [ 0.95368068 -0.20456211 -0.2205618
], radius 1.84933, and length 14.4545
Axis 'Citral model #7/helix axes/chain A helix 13' centered at [164.75063676
134.02259815 103.14059441] with direction [-0.75384895 0.24553509 0.60944588],
radius 1.70321, and length 11.5055
Axis 'Citral model #7/helix axes/chain A helix 14' centered at [161.21165812
128.13240392 94.97533439] with direction [ 0.79719149 -0.42554936
-0.42824465], radius 1.86158, and length 18.4785
Axis 'Citral model #7/helix axes/chain A helix 15' centered at [173.36010162
124.54280094 99.67010752] with direction [-0.47695119 0.674486 0.56354787],
radius 1.51283, and length 6.53319
Axis 'Citral model #7/helix axes/chain A helix 16' centered at [164.69851627
127.87220955 110.82338215] with direction [-0.58766708 0.24998385 0.76951639],
radius 1.71871, and length 11.5181
Axis 'Citral model #7/helix axes/chain A helix 17' centered at [157.60594564
124.03687248 106.23584051] with direction [ 0.50034366 -0.66546114
-0.55391126], radius 1.71247, and length 11.3132
Axis 'Citral model #7/helix axes/chain A helix 18' centered at [163.92777023
122.70583637 118.72870524] with direction [-0.60284043 0.46204554 0.65045932],
radius 1.74557, and length 10.1799
Axis 'Citral model #7/helix axes/chain A helix 19' centered at [154.17734608
121.68014121 115.64083967] with direction [ 0.70970794 -0.68793986
0.15183341], radius 1.15253, and length 5.81428
Axis 'Citral model #7/helix axes/chain A helix 20' centered at [159.85630864
109.1025834 120.82183576] with direction [ 0.31118322 -0.58961444 0.74533202],
radius 1.79101, and length 16.3864
Axis 'Citral model #7/helix axes/chain A helix 21' centered at [160.09522906
110.53898587 148.50508569] with direction [-0.10353531 0.20833352 0.97256238],
radius 1.89761, and length 34.6232
Axis 'Citral model #7/helix axes/chain A helix 22' centered at [170.32164921
120.27586392 144.78867289] with direction [ 0.10424347 0.6700999 -0.73491457],
radius 1.97219, and length 27.7405
Axis 'Citral model #7/helix axes/chain A helix 23' centered at [162.43759742
133.43128813 130.49100053] with direction [-0.46890092 -0.11475384
0.87576451], radius 1.13033, and length 6.14974
Axis 'Citral model #7/helix axes/chain A helix 24' centered at [165.37671957
124.77030092 150.41773758] with direction [ 0.37644558 -0.11174568
0.91967474], radius 2.00213, and length 36.1574
Axis 'Citral model #7/helix axes/chain A helix 25' centered at [156.27027597
121.53042518 153.52300027] with direction [-0.35957718 -0.42249167 -0.8319886
], radius 1.76913, and length 13.2241
Axis 'Citral model #7/helix axes/chain A helix 26' centered at [153.54918795
117.93272927 142.08904428] with direction [0.06056194 0.44835698 0.89180058],
radius 1.52676, and length 13.418
Axis 'Citral model #7/helix axes/chain A helix 27' centered at [145.40769281
113.63882326 132.28999981] with direction [-0.40942353 0.26606665 0.87268603],
radius 1.21512, and length 5.24173
Axis 'Citral model #7/helix axes/chain A helix 28' centered at [145.88043384
118.18923247 133.85226257] with direction [-0.54820525 0.75087841 0.3683105 ],
radius 1.15226, and length 5.79101
Axis 'Citral model #7/helix axes/chain A helix 29' centered at [145.90773485
128.58251071 136.6176804 ] with direction [-0.20735293 0.96524449 0.15908438],
radius 1.89683, and length 16.6614
Axis 'Citral model #7/helix axes/chain A helix 30' centered at [141.17391176
141.90644863 145.94793685] with direction [-0.22890173 0.62193175 0.74886908],
radius 1.91735, and length 18.1064
Axis 'Citral model #7/helix axes/chain A helix 31' centered at [140.98543049
147.5205391 154.35335347] with direction [-0.01642654 0.93060102 0.36566638],
radius 0.373397, and length 2.46363
Axis 'Citral model #7/helix axes/chain A helix 32' centered at [137.92025901
148.2272557 157.28571344] with direction [ 0.53961232 -0.2015881 0.81742326],
radius 0.687457, and length 4.71521
Axis 'Citral model #7/helix axes/chain A helix 33' centered at [136.7190018
151.66868536 162.54008548] with direction [-0.47665785 0.31924527 0.81907249],
radius 1.69529, and length 10.6028
Axis 'Citral model #7/helix axes/chain A helix 34' centered at [137.8211772
139.49064592 160.00113034] with direction [-0.5940109 -0.63878773
-0.48897985], radius 1.817, and length 20.5132
Axis 'Citral model #7/helix axes/chain A helix 35' centered at [127.76855247
145.80057332 155.53031527] with direction [ 0.21966653 -0.53129368
-0.81821369], radius 1.94854, and length 26.5704
Axis 'Citral model #7/helix axes/chain A helix 36' centered at [133.14004433
135.51573759 138.54510254] with direction [ 0.20893045 -0.51262101
-0.83280716], radius 1.92086, and length 15.2876
Axis 'Citral model #7/helix axes/chain A helix 37' centered at [142.00583043
124.07862474 125.46491147] with direction [ 0.96731323 0.02541693
-0.25230754], radius 1.11714, and length 6.15225
Axis 'Citral model #7/helix axes/chain A helix 38' centered at [158.52596557
118.1080991 127.5298937 ] with direction [ 0.93980704 -0.31083297 0.14193514],
radius 1.84228, and length 30.0587
Axis 'Citral model #7/helix axes/chain A helix 39' centered at [175.61596242
107.46216106 126.13332225] with direction [-0.91526457 -0.23339082
-0.32835879], radius 1.56446, and length 6.0364
Axis 'Citral model #7/helix axes/chain A helix 40' centered at [141.96082979
107.97244904 101.64565728] with direction [-0.51430437 0.00562793
-0.85758926], radius 1.71572, and length 8.21103
Axis 'Citral model #7/helix axes/chain A helix 41' centered at [139.83067211
107.2317198 95.70082448] with direction [-0.85706505 -0.33464938 -0.39172604],
radius 1.13595, and length 5.93734
Axis 'Citral model #7/helix axes/chain B helix 1' centered at [173.6871736
88.88842383 87.14735894] with direction [-0.99682768 0.02647962 0.07505599],
radius 1.13934, and length 5.82028
Axis 'Citral model #7/helix axes/chain B helix 2' centered at [167.49185498
95.67605888 86.07834638] with direction [-0.66979327 0.68521404 -0.28610958],
radius 1.79272, and length 14.7762
Axis 'Citral model #7/helix axes/chain B helix 3' centered at [171.5047109
82.31485322 76.11928495] with direction [ 0.17072229 -0.84443388 0.50772563],
radius 1.90099, and length 9.73002
Axis 'Citral model #7/helix axes/chain B helix 4' centered at [167.08849993
81.23023507 89.03723097] with direction [0.72880355 0.68243857 0.05588365],
radius 1.17495, and length 5.5741
Axis 'Citral model #7/helix axes/chain B helix 5' centered at [158.10260407
93.44277904 88.30624962] with direction [-0.46326012 0.85787696 0.22234474],
radius 1.74173, and length 11.1668
Axis 'Citral model #7/helix axes/chain B helix 6' centered at [157.70934259
88.7396928 77.05257372] with direction [ 0.22513621 -0.97116583 -0.07842583],
radius 1.83889, and length 20.2784
Axis 'Citral model #7/helix axes/chain B helix 7' centered at [155.85924364
79.44750841 85.03012219] with direction [0.33501995 0.48603988 0.80717215],
radius 1.55879, and length 5.47154
Axis 'Citral model #7/helix axes/chain B helix 8' centered at [149.62490443
91.16293651 90.31123391] with direction [ 0.23224461 -0.97222159 0.02911406],
radius 1.82199, and length 7.86623
Axis 'Citral model #7/helix axes/chain B helix 9' centered at [146.19223413
92.82746923 81.65712279] with direction [ 0.24329703 -0.95949343 -0.14205252],
radius 1.69225, and length 11.3919
Axis 'Citral model #7/helix axes/chain B helix 10' centered at [146.05676882
84.90079416 80.73594477] with direction [ 0.49919539 -0.82515276 -0.26443692],
radius 1.20446, and length 5.26333
Axis 'Citral model #7/helix axes/chain B helix 11' centered at [139.60593471
92.70449005 94.82646052] with direction [-0.33099247 0.9194186 0.2123992 ],
radius 1.76928, and length 11.2323
Axis 'Citral model #7/helix axes/chain B helix 12' centered at [135.88597174
92.00218986 86.21528275] with direction [-0.20440602 -0.95363833 -0.22088936],
radius 1.84984, and length 14.455
Axis 'Citral model #7/helix axes/chain B helix 13' centered at [134.00981006
92.04718959 103.13289931] with direction [-0.24282347 -0.75396687
-0.61038571], radius 1.7034, and length 11.4996
Axis 'Citral model #7/helix axes/chain B helix 14' centered at [128.13176163
95.59170463 94.97177359] with direction [-0.42546511 -0.79719488 -0.42832203],
radius 1.86193, and length 18.4784
Axis 'Citral model #7/helix axes/chain B helix 15' centered at [124.54143785
83.44365552 99.66372415] with direction [0.67475131 0.47640235 0.56369448],
radius 1.51292, and length 6.53176
Axis 'Citral model #7/helix axes/chain B helix 16' centered at [127.87101437
92.09915503 110.82308741] with direction [-0.2492881 -0.58721556 -0.77008657],
radius 1.71773, and length 11.5227
Axis 'Citral model #7/helix axes/chain B helix 17' centered at [124.06325186
99.18736996 106.22936578] with direction [-0.66429761 -0.49927501
-0.55626715], radius 1.71584, and length 11.3268
Axis 'Citral model #7/helix axes/chain B helix 18' centered at [122.70972763
92.87830983 118.7252019 ] with direction [0.4637127 0.60323503 0.64890526],
radius 1.74528, and length 10.1855
Axis 'Citral model #7/helix axes/chain B helix 19' centered at [121.64607181
102.57835311 115.63013806] with direction [-0.69956253 -0.69706292
0.15721178], radius 1.15585, and length 5.80546
Axis 'Citral model #7/helix axes/chain B helix 20' centered at [109.09838943
96.94038734 120.83327522] with direction [-0.59026518 -0.31122568 0.74479903],
radius 1.79256, and length 16.3565
Axis 'Citral model #7/helix axes/chain B helix 21' centered at [110.53782765
96.69888518 148.50395667] with direction [0.20811083 0.10306469 0.97266004],
radius 1.89787, and length 34.6253
Axis 'Citral model #7/helix axes/chain B helix 22' centered at [120.27549073
86.47651632 144.7842876 ] with direction [ 0.67012745 -0.10412991
-0.73490555], radius 1.97211, and length 27.7421
Axis 'Citral model #7/helix axes/chain B helix 23' centered at [133.43214328
94.36268971 130.48699296] with direction [-0.11478136 0.46871311 0.87586144],
radius 1.13036, and length 6.14921
Axis 'Citral model #7/helix axes/chain B helix 24' centered at [124.77043362
91.41975742 150.4132187 ] with direction [-0.11180002 -0.37660016 0.91960485],
radius 2.00216, and length 36.1584
Axis 'Citral model #7/helix axes/chain B helix 25' centered at [121.53356443
100.52893509 153.51796519] with direction [-0.42242175 0.36027791
-0.83172092], radius 1.76941, and length 13.2214
Axis 'Citral model #7/helix axes/chain B helix 26' centered at [117.93261296
103.24967354 142.08611253] with direction [-0.44845863 0.06083095
-0.89173116], radius 1.52664, and length 13.4171
Axis 'Citral model #7/helix axes/chain B helix 27' centered at [113.63692613
111.39865803 132.29458227] with direction [-0.26721195 -0.40693554
-0.87349942], radius 1.21581, and length 5.23489
Axis 'Citral model #7/helix axes/chain B helix 28' centered at [118.18613075
110.91122933 133.85305152] with direction [0.7511116 0.54757964 0.36876538],
radius 1.15115, and length 5.79603
Axis 'Citral model #7/helix axes/chain B helix 29' centered at [128.58289916
110.89087976 136.61757787] with direction [0.96526637 0.2073379 0.15897117],
radius 1.89707, and length 16.664
Axis 'Citral model #7/helix axes/chain B helix 30' centered at [141.90562768
115.62293505 145.9462272 ] with direction [0.62192533 0.22847995 0.7490032 ],
radius 1.91761, and length 18.1011
Axis 'Citral model #7/helix axes/chain B helix 31' centered at [147.52611247
115.81426601 154.34323281] with direction [0.93176096 0.01516819 0.36275535],
radius 0.373343, and length 2.46391
Axis 'Citral model #7/helix axes/chain B helix 32' centered at [148.22958248
118.87698992 157.2856262 ] with direction [-0.20139501 -0.54132962
0.81633467], radius 0.687059, and length 4.71708
Axis 'Citral model #7/helix axes/chain B helix 33' centered at [151.66959209
120.07446109 162.543486 ] with direction [0.31936351 0.47617223 0.81930883],
radius 1.69529, and length 10.6074
Axis 'Citral model #7/helix axes/chain B helix 34' centered at [139.49167107
118.97191903 160.00304319] with direction [-0.63896005 0.59395597
-0.48882141], radius 1.8169, and length 20.5109
Axis 'Citral model #7/helix axes/chain B helix 35' centered at [145.79749722
129.02770128 155.52355272] with direction [-0.531263 -0.21944126 -0.81829406],
radius 1.94851, and length 26.5816
Axis 'Citral model #7/helix axes/chain B helix 36' centered at [135.52059719
123.66805688 138.5353284 ] with direction [-0.51242231 -0.21086952
-0.83244064], radius 1.92302, and length 15.2689
Axis 'Citral model #7/helix axes/chain B helix 37' centered at [124.07875459
114.79572106 125.46586641] with direction [ 0.02569242 -0.96726321
-0.25247137], radius 1.11678, and length 6.15508
Axis 'Citral model #7/helix axes/chain B helix 38' centered at [118.10716289
98.27431747 127.53073124] with direction [-0.3108765 -0.93976082 0.1421457 ],
radius 1.84221, and length 30.0579
Axis 'Citral model #7/helix axes/chain B helix 39' centered at [107.4634581
81.18373789 126.13074843] with direction [-0.23323311 0.91565327 -0.32738572],
radius 1.56501, and length 6.028
Axis 'Citral model #7/helix axes/chain B helix 40' centered at [107.97179239
114.84096747 101.64714354] with direction [ 0.00498928 0.51436325 -0.8575579
], radius 1.71591, and length 8.2092
Axis 'Citral model #7/helix axes/chain B helix 41' centered at [107.23167643
116.9742558 95.70824822] with direction [-0.33452155 0.85836542 -0.38897832],
radius 1.13646, and length 5.9364
Axis 'Citral model #7/helix axes/chain C helix 1' centered at [ 83.11634059
167.92789993 87.15118661] with direction [ 0.99683931 -0.02613242 0.07502329],
radius 1.13941, and length 5.81973
Axis 'Citral model #7/helix axes/chain C helix 2' centered at [ 89.3109066
161.14014698 86.07951527] with direction [ 0.66952498 -0.68535621
-0.28639688], radius 1.79277, and length 14.777
Axis 'Citral model #7/helix axes/chain C helix 3' centered at [ 85.30205157
174.50520433 76.12214446] with direction [-0.17044968 0.84443761 0.50781102],
radius 1.90226, and length 9.72897
Axis 'Citral model #7/helix axes/chain C helix 4' centered at [ 89.71580948
175.58077114 89.04133398] with direction [-0.72892848 -0.68228868 0.05608408],
radius 1.17468, and length 5.57647
Axis 'Citral model #7/helix axes/chain C helix 5' centered at [ 98.69714224
163.36810594 88.30587023] with direction [ 0.46346337 -0.8577212 0.222522 ],
radius 1.74139, and length 11.1649
Axis 'Citral model #7/helix axes/chain C helix 6' centered at [ 99.09380454
168.07614418 77.05545696] with direction [-0.22509892 0.97120056 -0.07810221],
radius 1.83884, and length 20.2783
Axis 'Citral model #7/helix axes/chain C helix 7' centered at [100.9468584
177.36610785 85.03557073] with direction [-0.33604643 -0.48597261 0.80678586],
radius 1.55873, and length 5.46989
Axis 'Citral model #7/helix axes/chain C helix 8' centered at [107.17784535
165.64454058 90.3139236 ] with direction [-0.23200019 0.97225641 0.02988957],
radius 1.82228, and length 7.86763
Axis 'Citral model #7/helix axes/chain C helix 9' centered at [110.60851613
163.98279885 81.65763219] with direction [-0.24284725 0.95978745 -0.14083061],
radius 1.69245, and length 11.3962
Axis 'Citral model #7/helix axes/chain C helix 10' centered at [110.74614778
171.90987841 80.74005345] with direction [-0.4994794 0.82506407 -0.26417724],
radius 1.20468, and length 5.26229
Axis 'Citral model #7/helix axes/chain C helix 11' centered at [117.1944465
164.10008307 94.83114545] with direction [ 0.33144696 -0.91935741 0.21195485],
radius 1.76907, and length 11.2345
Axis 'Citral model #7/helix axes/chain C helix 12' centered at [120.91710273
164.80711425 86.22021581] with direction [ 0.2045494 0.95368694 -0.22054652],
radius 1.84947, and length 14.4544
Axis 'Citral model #7/helix axes/chain C helix 13' centered at [122.78004315
164.75285846 103.14093961] with direction [ 0.24554689 0.75383758
-0.60945519], radius 1.70331, and length 11.504
Axis 'Citral model #7/helix axes/chain C helix 14' centered at [128.67041187
161.21232157 94.97662169] with direction [ 0.42562136 0.79719578 -0.42816509],
radius 1.86178, and length 18.4794
Axis 'Citral model #7/helix axes/chain C helix 15' centered at [132.26094557
173.36096788 99.67120897] with direction [-0.67455823 -0.47685297 0.56354453],
radius 1.51305, and length 6.53384
Axis 'Citral model #7/helix axes/chain C helix 16' centered at [128.92953507
164.6991968 110.82359799] with direction [ 0.24971277 0.58757265 -0.7696765 ],
radius 1.71826, and length 11.5198
Axis 'Citral model #7/helix axes/chain C helix 17' centered at [132.76252237
157.60691454 106.24018895] with direction [ 0.66565074 0.50074431
-0.55332109], radius 1.71293, and length 11.3163
Axis 'Citral model #7/helix axes/chain C helix 18' centered at [134.09054608
163.92360395 118.73116372] with direction [-0.46370762 -0.60333109
0.64881957], radius 1.74531, and length 10.1842
Axis 'Citral model #7/helix axes/chain C helix 19' centered at [135.15229547
154.22300361 115.6340515 ] with direction [0.69919548 0.69738449 0.15741843],
radius 1.15593, and length 5.80395
Axis 'Citral model #7/helix axes/chain C helix 20' centered at [147.70184519
159.86053593 120.83810857] with direction [0.59015448 0.31111753 0.74493192],
radius 1.79264, and length 16.3575
Axis 'Citral model #7/helix axes/chain C helix 21' centered at [146.25854261
160.10038393 148.50883902] with direction [-0.20839959 -0.10304221
0.97260059], radius 1.89801, and length 34.6267
Axis 'Citral model #7/helix axes/chain C helix 22' centered at [136.51076536
170.31613802 144.76954005] with direction [-0.67058766 0.10369525
-0.73454713], radius 1.96902, and length 27.7154
Axis 'Citral model #7/helix axes/chain C helix 23' centered at [123.36380693
162.44132902 130.49082124] with direction [ 0.11641625 -0.46864796 0.8756805
], radius 1.13045, and length 6.1455
Axis 'Citral model #7/helix axes/chain C helix 24' centered at [132.02851542
165.37750447 150.4187355 ] with direction [0.11176105 0.37643118 0.91967877],
radius 2.00208, and length 36.1575
Axis 'Citral model #7/helix axes/chain C helix 25' centered at [135.26675722
156.27000202 153.52448087] with direction [ 0.42286792 -0.35942463
-0.83186337], radius 1.76929, and length 13.2226
Axis 'Citral model #7/helix axes/chain C helix 26' centered at [138.86531416
153.54847078 142.09175902] with direction [ 0.44817287 -0.06057233
-0.89189241], radius 1.52694, and length 13.4191
Axis 'Citral model #7/helix axes/chain C helix 27' centered at [143.15772122
145.40530033 132.29298201] with direction [ 0.26664491 0.40854262
-0.87292234], radius 1.21592, and length 5.23677
Axis 'Citral model #7/helix axes/chain C helix 28' centered at [138.60916633
145.8849785 133.85095079] with direction [-0.75074679 -0.5482445 0.36852031],
radius 1.15143, and length 5.79349
Axis 'Citral model #7/helix axes/chain C helix 29' centered at [128.21567837
145.91757365 136.6164288 ] with direction [-0.96556372 -0.20465075
0.16063865], radius 1.89606, and length 16.6578
Axis 'Citral model #7/helix axes/chain C helix 30' centered at [114.89083441
141.17452233 145.95654946] with direction [-0.62224249 -0.22959091
0.74839983], radius 1.91886, and length 18.0868
Axis 'Citral model #7/helix axes/chain C helix 31' centered at [109.27699208
140.98749438 154.35098366] with direction [-0.93082818 -0.01600674 0.3651064
], radius 0.37344, and length 2.46364
Axis 'Citral model #7/helix axes/chain C helix 32' centered at [108.56807433
137.92519074 157.28355681] with direction [0.20084598 0.53985134 0.81744812],
radius 0.687331, and length 4.71477
Axis 'Citral model #7/helix axes/chain C helix 33' centered at [105.13250593
136.71997824 162.5355974 ] with direction [-0.31796696 -0.47786989
0.81886347], radius 1.69726, and length 10.6009
Axis 'Citral model #7/helix axes/chain C helix 34' centered at [117.30626467
137.82307923 160.00145183] with direction [ 0.63892066 -0.59395288
-0.48887664], radius 1.81677, and length 20.5113
Axis 'Citral model #7/helix axes/chain C helix 35' centered at [111.02951649
127.72499444 155.49206374] with direction [ 0.52692482 0.22506977 -0.8195693
], radius 1.94611, and length 26.7234
Axis 'Citral model #7/helix axes/chain C helix 36' centered at [121.30199679
133.11519538 138.50159121] with direction [ 0.50071977 0.2161843 -0.83817901],
radius 1.93119, and length 15.1946
Axis 'Citral model #7/helix axes/chain C helix 37' centered at [132.72231571
142.00669025 125.46353121] with direction [-0.02541063 0.96776091
-0.25058554], radius 1.11671, and length 6.15548
Axis 'Citral model #7/helix axes/chain C helix 38' centered at [138.69318474
158.52744648 127.53526473] with direction [0.31088139 0.93973614 0.14229809],
radius 1.84211, and length 30.0596
Axis 'Citral model #7/helix axes/chain C helix 39' centered at [149.34370052
175.61222745 126.13681921] with direction [ 0.23240737 -0.91565585
-0.32796522], radius 1.56475, and length 6.02825
Axis 'Citral model #7/helix axes/chain C helix 40' centered at [148.82741408
141.97064835 101.65057731] with direction [-0.00338705 -0.51524316
-0.85703735], radius 1.71767, and length 8.21639
Axis 'Citral model #7/helix axes/chain C helix 41' centered at [149.57328409
139.83218702 95.70986525] with direction [ 0.33596441 -0.85812827
-0.38825738], radius 1.13687, and length 5.93717
Axis 'Citral model #7/helix axes/chain D helix 1' centered at [88.88069298
83.11692725 87.14388759] with direction [-0.02634815 -0.99683247 -0.07503871],
radius 1.13932, and length 5.81956
Axis 'Citral model #7/helix axes/chain D helix 2' centered at [95.66726977
89.31262108 86.07561649] with direction [ 0.68534345 0.66962777 -0.286187 ],
radius 1.79267, and length 14.7766
Axis 'Citral model #7/helix axes/chain D helix 3' centered at [82.3040243
85.30515633 76.11483824] with direction [-0.84455457 -0.17125299 0.50734603],
radius 1.90204, and length 9.72503
Axis 'Citral model #7/helix axes/chain D helix 4' centered at [81.22322617
89.71774082 89.03582467] with direction [ 0.68177683 -0.72942305 0.05587822],
radius 1.17474, and length 5.57597
Axis 'Citral model #7/helix axes/chain D helix 5' centered at [93.43761863
98.69924949 88.30218561] with direction [0.85780865 0.46333 0.22246263],
radius 1.74145, and length 11.1673
Axis 'Citral model #7/helix axes/chain D helix 6' centered at [88.73194575
99.09590351 77.05055907] with direction [-0.97119171 -0.22505221 -0.07834639],
radius 1.83877, and length 20.278
Axis 'Citral model #7/helix axes/chain D helix 7' centered at [ 79.44070869
100.94833954 85.02924129] with direction [-0.48592945 0.33600552 -0.80682889],
radius 1.55878, and length 5.47002
Axis 'Citral model #7/helix axes/chain D helix 8' centered at [ 91.16056625
107.17986717 90.30930397] with direction [ 0.97224795 0.23202765 -0.02995143],
radius 1.8222, and length 7.86725
Axis 'Citral model #7/helix axes/chain D helix 9' centered at [ 92.82358545
110.61073821 81.65366352] with direction [-0.9597007 -0.24293746 -0.14126554],
radius 1.69225, and length 11.3938
Axis 'Citral model #7/helix axes/chain D helix 10' centered at [ 84.89707922
110.7483909 80.73516745] with direction [-0.82503213 -0.49927704 -0.26465907],
radius 1.20459, and length 5.26283
Axis 'Citral model #7/helix axes/chain D helix 11' centered at [ 92.70243409
117.19701603 94.82448162] with direction [0.91937032 0.33094318 0.21268481],
radius 1.76916, and length 11.2311
Axis 'Citral model #7/helix axes/chain D helix 12' centered at [ 91.99987934
120.91840987 86.21803357] with direction [-0.95362259 0.20436813 -0.22099236],
radius 1.84983, and length 14.4577
Axis 'Citral model #7/helix axes/chain D helix 13' centered at [ 92.04575814
122.78977123 103.13347471] with direction [ 0.75419481 -0.24300099
0.61003336], radius 1.7036, and length 11.5012
Axis 'Citral model #7/helix axes/chain D helix 14' centered at [ 95.58761506
128.67286814 94.97096282] with direction [-0.79699338 0.42584566 -0.42831884],
radius 1.86215, and length 18.4714
Axis 'Citral model #7/helix axes/chain D helix 15' centered at [ 83.44178174
132.26215107 99.66536473] with direction [ 0.47658159 -0.67481787 0.56346325],
radius 1.51283, and length 6.53345
Axis 'Citral model #7/helix axes/chain D helix 16' centered at [ 92.07651543
128.88656951 110.84080209] with direction [ 0.57758008 -0.26091007
0.77351611], radius 1.71538, and length 11.4933
Axis 'Citral model #7/helix axes/chain D helix 17' centered at [ 99.19869413
132.73698844 106.226256 ] with direction [-0.49647594 0.66495223 -0.55798761],
radius 1.71562, and length 11.3319
Axis 'Citral model #7/helix axes/chain D helix 18' centered at [ 92.87790843
134.08995172 118.72881752] with direction [ 0.60277421 -0.46306367
0.64979634], radius 1.74433, and length 10.1867
Axis 'Citral model #7/helix axes/chain D helix 19' centered at [102.66389724
135.17517284 115.66481782] with direction [-0.70386253 0.69296579 0.156128 ],
radius 1.14446, and length 5.85216
Axis 'Citral model #7/helix axes/chain D helix 20' centered at [ 96.94015876
147.70251115 120.83576519] with direction [-0.31120127 0.59011406 0.74492897],
radius 1.79277, and length 16.3566
Axis 'Citral model #7/helix axes/chain D helix 21' centered at [ 96.69976822
146.25980257 148.5072861 ] with direction [ 0.10307888 -0.20825288
0.97262813], radius 1.89787, and length 34.6264
Axis 'Citral model #7/helix axes/chain D helix 22' centered at [ 86.4756635
136.52325571 144.78625994] with direction [-0.10424026 -0.6700214
-0.73498659], radius 1.9723, and length 27.7413
Axis 'Citral model #7/helix axes/chain D helix 23' centered at [ 94.35762041
123.36605981 130.4909265 ] with direction [0.46801957 0.11367834 0.87637601],
radius 1.13037, and length 6.14898
Axis 'Citral model #7/helix axes/chain D helix 24' centered at [ 91.42215869
132.02614376 150.40957508] with direction [-0.37666156 0.11183588 0.91957534],
radius 2.00212, and length 36.1685
Axis 'Citral model #7/helix axes/chain D helix 25' centered at [100.52949641
135.26452374 153.52155974] with direction [ 0.3600426 0.4221749 -0.83194812],
radius 1.76937, and length 13.2246
Axis 'Citral model #7/helix axes/chain D helix 26' centered at [103.24242307
138.8682789 142.09350726] with direction [-0.05841822 -0.44969189 0.89127129],
radius 1.5268, and length 13.4116
Axis 'Citral model #7/helix axes/chain D helix 27' centered at [111.4186914
143.09913452 132.33661372] with direction [ 0.40338379 -0.25496558
0.87879125], radius 1.21258, and length 5.25112
Axis 'Citral model #7/helix axes/chain D helix 28' centered at [110.91283236
138.64028504 133.88365017] with direction [ 0.54668813 -0.76380318
0.34312796], radius 1.15328, and length 5.77993
Axis 'Citral model #7/helix axes/chain D helix 29' centered at [110.84670016
128.1741431 136.65013212] with direction [ 0.22299999 -0.96054418 0.16621037],
radius 1.89954, and length 16.6724
Axis 'Citral model #7/helix axes/chain D helix 30' centered at [115.62106234
114.89578396 145.96051592] with direction [ 0.2287073 -0.62397974 0.74722303],
radius 1.91801, and length 18.0787
Axis 'Citral model #7/helix axes/chain D helix 31' centered at [115.80782402
109.27678531 154.35122335] with direction [ 0.01639098 -0.93079303
0.36517895], radius 0.373482, and length 2.46325
Axis 'Citral model #7/helix axes/chain D helix 32' centered at [118.87322074
108.56880089 157.28361536] with direction [-0.53960028 0.20106704 0.81755953],
radius 0.687234, and length 4.71365
Axis 'Citral model #7/helix axes/chain D helix 33' centered at [120.07509579
105.12639885 162.53981232] with direction [ 0.47612993 -0.31905901
0.81945204], radius 1.69511, and length 10.6041
Axis 'Citral model #7/helix axes/chain D helix 34' centered at [118.97270763
117.30185145 160.00203377] with direction [ 0.59370728 0.63933129
-0.48863808], radius 1.81663, and length 20.5156
Axis 'Citral model #7/helix axes/chain D helix 35' centered at [129.02518766
110.99813228 155.52089759] with direction [-0.21938213 0.53116261
-0.81837508], radius 1.94799, and length 26.5885
Axis 'Citral model #7/helix axes/chain D helix 36' centered at [123.6777321
121.27766238 138.52444004] with direction [-0.20713169 0.51071979
-0.83442301], radius 1.92281, and length 15.2788
Axis 'Citral model #7/helix axes/chain D helix 37' centered at [114.79692556
132.7234732 125.4665613 ] with direction [-0.9669655 -0.0283183 -0.25332942],
radius 1.11711, and length 6.15303
Axis 'Citral model #7/helix axes/chain D helix 38' centered at [ 98.27479117
138.68992652 127.53003702] with direction [-0.9395885 0.31127206 0.14241897],
radius 1.84219, and length 30.0648
Axis 'Citral model #7/helix axes/chain D helix 39' centered at [ 81.18589715
149.33860014 126.13266319] with direction [ 0.9155763 0.23285662 -0.32786861],
radius 1.56472, and length 6.03152
Axis 'Citral model #7/helix axes/chain D helix 40' centered at [114.83285189
148.82765013 101.6520556 ] with direction [ 0.51543338 -0.00362507
-0.85692199], radius 1.71785, and length 8.21523
Axis 'Citral model #7/helix axes/chain D helix 41' centered at [116.97324882
149.56828004 95.70893995] with direction [ 0.85851869 0.33428669 -0.38884195],
radius 1.13687, and length 5.93855
> select #7.2.76
1 model selected
> select add #1.2.33
2 models selected
> select clear
> view
> select #7.2.76
1 model selected
> select #1.2.116
1 model selected
> select clear
> hide #!1.2 models
> show #!1.2 models
> hide #!1.2 models
> hide #1.1 models
> show #1.1 models
> show #!1.2 models
> hide #!7 models
> ui mousemode right "mark plane"
[Repeated 1 time(s)]
> ui mousemode right "mark point"
> ui mousemode right "mark maximum"
> marker #16 position 157.7,134.6,168.7 color yellow radius 0.84
> marker #16 position 157.4,137.3,160.2 color yellow radius 0.84
> marker #16 position 155,134.6,167.5 color yellow radius 0.84
> select #16/M:1@M
1 atom, 1 residue, 1 model selected
> select #16/M:2@M
1 atom, 1 residue, 1 model selected
> select #16/M:3@M
1 atom, 1 residue, 1 model selected
> marker #16 position 154.8,135.1,167.5 color yellow radius 0.84
> ui mousemode right "move markers"
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 87, in _angle_changes_handler
self._update_angles()
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 642, in _update_angles
self.angle_table.item(i, 4).setText(self._angle_text(atoms))
^^^^^^^^^^^^^^^^^^^^^^^
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ValueError: unsupported format character '-' (0x2d) at index 2
Error processing trigger "changes":
ValueError: unsupported format character '-' (0x2d) at index 2
File "F:\UCSF ChimeraX 1.7\ChimeraX\bin\Lib\site-
packages\chimerax\struct_measure\tool.py", line 94, in _angle_text
return self._angle_fmt % func(*[a.scene_coord for a in atoms])
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
> marker change #16:4 position 154.1,133.9,166.3
OpenGL version: 3.3.0 - Build 30.0.101.1404
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Python: 3.11.2
Locale: zh_CN.cp65001
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows
Manufacturer: HUAWEI
Model: MRG-WXX
OS: Microsoft Windows 11 家庭中文版 (Build 22631)
Memory: 16,952,647,680
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i5-1155G7 @ 2.50GHz
OSLanguage: zh-CN
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2023.11.17
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
comtypes: 1.1.14
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 23.2
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pywin32: 305
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
WMI: 1.5.1
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Fix available in next daily build.
(fix: https://github.com/RBVI/ChimeraX/commit/32e60d2dacfc9e85b72df17f41f38b0ef55dc8dd)