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Opened 19 months ago
Closed 19 months ago
#14886 closed defect (can't reproduce)
'Sequence' object has no attribute 'structure'
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sequence | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> C:\\\Users\\\Administrator\\\Desktop\\\2022816102@stu.njau.edu.cn-20240401182932-monomer-
> PPO1WT-497\\\2022816102@stu.njau.edu.cn-20240401182932-monomer-
> PPO1WT-497\\\relaxed_model_3_ptm_pred_0PPO1WT.pdb
Chain information for relaxed_model_3_ptm_pred_0PPO1WT.pdb #1
---
Chain | Description
A | No description available
> ui tool show Registration
> set bgColor white
> lighting soft
> graphics silhouettes true
> open
> C:/Users/Administrator/Desktop/2022816102@stu.njau.edu.cn-20240401183649-monomer-
> PPO1M2-497/2022816102@stu.njau.edu.cn-20240401183649-monomer-
> PPO1M2-497/relaxed_model_3_ptm_pred_0PPO1M2.pdb
Chain information for relaxed_model_3_ptm_pred_0PPO1M2.pdb #2
---
Chain | Description
A | No description available
> mmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker relaxed_model_3_ptm_pred_0PPO1WT.pdb, chain A (#1) with
relaxed_model_3_ptm_pred_0PPO1M2.pdb, chain A (#2), sequence alignment score =
2576.2
RMSD between 497 pruned atom pairs is 0.202 angstroms; (across all 497 pairs:
0.202)
> color #1 #ff5500ff
> color #2 #5555ffff
> color #2 #0b40ffff
> color #2 blue
> hide #2 models
> save C:\Users\Administrator/Desktop\image1.png supersample 3
> hide #1 models
> show #1 models
> show #2 models
> hide #1 models
> graphics silhouettes false
> graphics silhouettes true
> save C:\Users\Administrator/Desktop\image2.png supersample 3
> hide #2 models
> show #1 models
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file
> C:/Users/Administrator/Desktop/2022816102@stu.njau.edu.cn-20240401182932-monomer-
> PPO1WT-497/2022816102@stu.njau.edu.cn-20240401182932-monomer-
> PPO1WT-497/result_model_3_ptm_pred_0PPO1WT.pkl
> color #1:227-227 lime
> color #1:156-156 magenta
> color #1:205-205 lime
> color #1:194-194 magenta
> color bfactor #1 palette alphafold
7506 atoms, 497 residues, atom bfactor range 30.7 to 98.8
> save C:\Users\Administrator/Desktop\image3.png supersample 3
> color #1 #ff5500ff
> hide #1 models
> show #2 models
> ui tool show "AlphaFold Error Plot"
> alphafold pae #2 file
> C:/Users/Administrator/Desktop/2022816102@stu.njau.edu.cn-20240401183649-monomer-
> PPO1M2-497/2022816102@stu.njau.edu.cn-20240401183649-monomer-
> PPO1M2-497\\\result_model_3_ptm_pred_0PPO1M2.pkl
> color #2:250-250 lime
> color #2:195-195 magenta
> color #2:264-264 lime
> color #2:277-277 magenta
> color bfactor #2 palette alphafold
7514 atoms, 497 residues, atom bfactor range 30.6 to 98.8
> save C:\Users\Administrator/Desktop\image4.png supersample 3
> show #1 models
> color #2 blue
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:497
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #1/A
7506 atoms, 7592 bonds, 497 residues, 1 model selected
> select #1/A:497
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #1/A
7506 atoms, 7592 bonds, 497 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
> select #2/A:497
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #2/A
7514 atoms, 7600 bonds, 497 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Destroying pre-existing alignment with identifier 2/A
Alignment identifier is 2/A
> select #2/A:497
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #2/A
7514 atoms, 7600 bonds, 497 residues, 1 model selected
> ui tool show "Modeller Comparative"
> modeller comparative 1/A:1 2/A:1 numModels 5 fast false multichain true
> hetPreserve false hydrogens false waterPreserve false
No Modeller license key provided. Get a license key by registering at the
Modeller web site.
> modeller comparative 1/A:1 2/A:1 numModels 5 fast false multichain true
> hetPreserve false hydrogens false waterPreserve false
Webservices job id: GHUN1EHW34PKK5KI
> toolshed show
Downloading bundle ChimeraX_ISOLDE-1.7.1-cp311-cp311-win_amd64.whl
Modeller job (ID GHUN1EHW34PKK5KI) finished
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker relaxed_model_3_ptm_pred_0PPO1WT.pdb, chain A (#1) with target,
chain A (#), sequence alignment score = 2552.4
RMSD between 489 pruned atom pairs is 0.230 angstroms; (across all 497 pairs:
0.974)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker relaxed_model_3_ptm_pred_0PPO1WT.pdb, chain A (#1) with target,
chain A (#), sequence alignment score = 2520.6
RMSD between 488 pruned atom pairs is 0.223 angstroms; (across all 497 pairs:
2.194)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker relaxed_model_3_ptm_pred_0PPO1WT.pdb, chain A (#1) with target,
chain A (#), sequence alignment score = 2521.2
RMSD between 488 pruned atom pairs is 0.192 angstroms; (across all 497 pairs:
0.534)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker relaxed_model_3_ptm_pred_0PPO1WT.pdb, chain A (#1) with target,
chain A (#), sequence alignment score = 2518.8
RMSD between 489 pruned atom pairs is 0.185 angstroms; (across all 497 pairs:
1.844)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker relaxed_model_3_ptm_pred_0PPO1WT.pdb, chain A (#1) with target,
chain A (#), sequence alignment score = 2552.4
RMSD between 487 pruned atom pairs is 0.270 angstroms; (across all 497 pairs:
2.534)
Associated target chain A to chain A with 0 mismatches
[Repeated 4 time(s)]Associated target chain A to chain A with 2 mismatches
[Repeated 4 time(s)] Chain information for target
---
Chain | Description
3.1/A 3.2/A 3.3/A 3.4/A 3.5/A | No description available
> hide #1 models
> hide #2 models
> show #1 models
> hide #1 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #3.1 models
> hide #3.2 models
> hide #3.3 models
> hide #3.4 models
> hide #3.5 models
> show #1 models
> show #2 models
Downloading bundle ChimeraX_Clipper-0.22.4-cp311-cp311-win_amd64.whl
Installed ChimeraX-Clipper (0.22.4)
Downloading bundle ChimeraX_ISOLDE-1.7.1-cp311-cp311-win_amd64.whl
[Repeated 1 time(s)]
> ui tool show "Show Sequence Viewer"
> close #3
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #1/A
7506 atoms, 7592 bonds, 497 residues, 1 model selected
> save C:/Users/Administrator/Desktop/1 format aln alignment 1/A
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
> select #2/A:497
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #2/A
7514 atoms, 7600 bonds, 497 residues, 1 model selected
> save C:/Users/Administrator/Desktop/2 format aln alignment 2/A
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:497
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #1/A
7506 atoms, 7592 bonds, 497 residues, 1 model selected
> select #2/A:497
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #2/A
7514 atoms, 7600 bonds, 497 residues, 1 model selected
> select #2/A:145
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/A:145
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #1/A:145-146
24 atoms, 24 bonds, 2 residues, 1 model selected
> select #1/A:145
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #1/A:145
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #2/A:145-146
29 atoms, 29 bonds, 2 residues, 1 model selected
> select #2/A:145-146
29 atoms, 29 bonds, 2 residues, 1 model selected
> select #2/A:146
14 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/A:145-146
29 atoms, 29 bonds, 2 residues, 1 model selected
> select
> #2/A:26-38,63-65,80-88,92-94,119-121,130-141,154-162,164-179,188-191,193-202,205-218,243-257,299-306,311-318,334-336,339-341,356-358,368-371,393-397,400-413,442-455,466-469,473-495
3014 atoms, 3009 bonds, 200 residues, 1 model selected
> select #2/A:145-146
29 atoms, 29 bonds, 2 residues, 1 model selected
> select #2/A:146-147
28 atoms, 29 bonds, 2 residues, 1 model selected
> select #2/A:145-147
43 atoms, 44 bonds, 3 residues, 1 model selected
> select #2/A:213
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #2/A:213-214
36 atoms, 35 bonds, 2 residues, 1 model selected
> select #2/A:145
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/A:145
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #1/A:145-146
24 atoms, 24 bonds, 2 residues, 1 model selected
> select #1/A:145-146
24 atoms, 24 bonds, 2 residues, 1 model selected
> select #1/A:145
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #1/A:145
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #1:145 #2:145
25 atoms, 23 bonds, 2 residues, 2 models selected
> save C:\Users\Administrator/Desktop\image5.png supersample 3
> select add #1
7521 atoms, 7606 bonds, 498 residues, 2 models selected
> select subtract #1
15 atoms, 14 bonds, 1 residue, 1 model selected
> select add #2
7514 atoms, 7600 bonds, 497 residues, 1 model selected
> select subtract #2
Nothing selected
> select #1:145 #2:145
25 atoms, 23 bonds, 2 residues, 2 models selected
> show sel atoms
> color sel byhetero
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> style sel ball
Changed 25 atom styles
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select add #1
7521 atoms, 7606 bonds, 498 residues, 2 models selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select subtract #1
15 atoms, 14 bonds, 1 residue, 1 model selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select add #2
7514 atoms, 7600 bonds, 497 residues, 1 model selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select subtract #2
Nothing selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> save C:\Users\Administrator/Desktop\image6.png supersample 3
> select
> #2/A:15-17,19-22,44-48,59-62,67-70,95-97,104-108,111-114,237-239,258-260,263-270,274-281,284-290,292-295,325-333,351-353,362-367,380-388,424-431,461-463
1689 atoms, 1687 bonds, 103 residues, 1 model selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select
> #2/A:26-38,63-65,80-88,92-94,119-121,130-141,154-162,164-179,188-191,193-202,205-218,243-257,299-306,311-318,334-336,339-341,356-358,368-371,393-397,400-413,442-455,466-469,473-495
3014 atoms, 3009 bonds, 200 residues, 1 model selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select
> #1/A:15-17,19-22,44-48,59-62,67-70,95-97,104-108,111-114,237-239,258-260,263-270,274-281,284-290,292-295,325-333,351-353,362-367,380-388,424-431,461-463
1686 atoms, 1684 bonds, 103 residues, 1 model selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select #1:330 #2:330
35 atoms, 33 bonds, 2 residues, 2 models selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> style sel ball
Changed 35 atom styles
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> show sel atoms
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select add #2
7530 atoms, 7615 bonds, 498 residues, 2 models selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select add #1
15020 atoms, 15192 bonds, 994 residues, 2 models selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> color sel byhetero
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> style sel ball
Changed 15020 atom styles
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> save C:\Users\Administrator/Desktop\image7.png supersample 3
> select subtract #1
7514 atoms, 7600 bonds, 497 residues, 1 model selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> select subtract #2
Nothing selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> ui tool show "Side View"
> save C:\Users\Administrator/Desktop\image8.png supersample 3
> select #1:330 #2:330
35 atoms, 33 bonds, 2 residues, 2 models selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
> hbonds sel reveal true
8 hydrogen bonds found
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1881, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 536.23
OpenGL renderer: NVIDIA GeForce RTX 2070 SUPER/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.2
Locale: zh_CN.cp936
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7B89
OS: Microsoft Windows 10 专业版 (Build 19045)
Memory: 51,419,525,120
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 5500
OSLanguage: zh-CN
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2023.11.17
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.22.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
comtypes: 1.1.14
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 23.2
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pywin32: 305
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
WMI: 1.5.1
Change History (2)
comment:1 by , 19 months ago
| Component: | Unassigned → Sequence |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → 'Sequence' object has no attribute 'structure' |
comment:2 by , 19 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Going to be entirely different in the daily build now that Chains are no longer directly demoted to Sequences