![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 19 months ago
Closed 19 months ago
#14920 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.7.10-x86_64-i386-64bit
ChimeraX Version: 1.7 (2023-12-19 08:36:03 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x000000010eeb2e00 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mouse_modes/mousemodes.py", line 526 in _cursor_position
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mouse_modes/mousemodes.py", line 483 in mouse_pause_tracking
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 151 in _redraw_timer_callback
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif (total: 52)
Process: ChimeraX [1170]
Path: /Applications/ChimeraX-1.7.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.0 (1.7.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [1170]
User ID: 501
Date/Time: 2024-04-06 16:54:11.185 -0700
OS Version: macOS 11.7.10 (20G1427)
Report Version: 12
Anonymous UUID: B6ACD91B-6AC4-3335-0D0D-BF8D7C42BB73
Sleep/Wake UUID: 30E28768-240E-4CB4-83A4-7F2F2B3A5590
Time Awake Since Boot: 380000 seconds
Time Since Wake: 6900 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 1005a9000-1005ad000 [ 16K] r-x/r-x SM=COW /Applications/ChimeraX-1.7.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2072390e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff207525bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20636bd5 raise + 26
3 org.python.python 0x00000001008315d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff20797d7d _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 org.python.python 0x00000001006e08f4 tupletraverse + 52
7 org.python.python 0x000000010082d888 gc_collect_main + 2568
8 org.python.python 0x000000010082f102 _PyObject_GC_Link + 306
9 org.python.python 0x000000010082f197 _PyObject_GC_New + 119
10 org.python.python 0x00000001006f47a6 object_new + 1446
11 org.python.python 0x00000001006e3b15 type_call + 69
12 org.python.python 0x000000010066036b _PyObject_Call + 107
13 sip.cpython-311-darwin.so 0x000000010ddb0254 sipWrapInstance + 212
14 QtGui.abi3.so 0x000000010f799cce meth_QWindow_mapFromGlobal(_object*, _object*) + 254
15 org.python.python 0x00000001006c47ea cfunction_call + 90
16 org.python.python 0x000000010065f3b1 _PyObject_MakeTpCall + 129
17 org.python.python 0x000000010078d3e7 _PyEval_EvalFrameDefault + 60455
18 org.python.python 0x00000001007934d0 _PyEval_Vector + 128
19 org.python.python 0x0000000100663816 method_vectorcall + 454
20 QtCore.abi3.so 0x000000010b67bf98 PyQtSlot::call(_object*, _object*) const + 40
21 QtCore.abi3.so 0x000000010b67be9a PyQtSlot::invoke(void**, _object*, void*, bool) const + 362
22 QtCore.abi3.so 0x000000010b67cde5 PyQtSlotProxy::unislot(void**) + 85
23 QtCore.abi3.so 0x000000010b67cd5a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
24 QtCore 0x000000010b992d67 0x10b8d5000 + 777575
25 QtCore 0x000000010b9a7b57 QTimer::timerEvent(QTimerEvent*) + 199
26 QtCore.abi3.so 0x000000010b56cb69 sipQTimer::timerEvent(QTimerEvent*) + 121
27 QtCore 0x000000010b98b4cd QObject::event(QEvent*) + 109
28 QtCore.abi3.so 0x000000010b56c9ea sipQTimer::event(QEvent*) + 186
29 QtWidgets 0x000000010e3e7a87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
30 QtWidgets 0x000000010e3e8a43 QApplication::notify(QObject*, QEvent*) + 499
31 QtWidgets.abi3.so 0x000000010df041e6 sipQApplication::notify(QObject*, QEvent*) + 230
32 QtCore 0x000000010b942c3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
33 QtCore 0x000000010bacc521 QTimerInfoList::activateTimers() + 961
34 libqcocoa.dylib 0x000000011b52b4a5 0x11b513000 + 99493
35 com.apple.CoreFoundation 0x00007fff2084acdc __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
36 com.apple.CoreFoundation 0x00007fff2084ac44 __CFRunLoopDoSource0 + 180
37 com.apple.CoreFoundation 0x00007fff2084a9c4 __CFRunLoopDoSources0 + 242
38 com.apple.CoreFoundation 0x00007fff208493ec __CFRunLoopRun + 893
39 com.apple.CoreFoundation 0x00007fff208489ac CFRunLoopRunSpecific + 563
40 com.apple.HIToolbox 0x00007fff28a931f3 RunCurrentEventLoopInMode + 292
41 com.apple.HIToolbox 0x00007fff28a92f55 ReceiveNextEventCommon + 587
42 com.apple.HIToolbox 0x00007fff28a92cf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
43 com.apple.AppKit 0x00007fff23052ad2 _DPSNextEvent + 864
44 com.apple.AppKit 0x00007fff230512a5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
45 com.apple.AppKit 0x00007fff230435c9 -[NSApplication run] + 586
46 libqcocoa.dylib 0x000000011b52c0ac 0x11b513000 + 102572
47 QtCore 0x000000010b94c326 QEventLoop::exec(QFlags) + 486
48 QtCore 0x000000010b943235 QCoreApplication::exec() + 133
49 QtWidgets.abi3.so 0x000000010dff0d9a meth_QApplication_exec(_object*, _object*) + 90
50 org.python.python 0x00000001006c47ea cfunction_call + 90
51 org.python.python 0x000000010065f3b1 _PyObject_MakeTpCall + 129
52 org.python.python 0x000000010078d3e7 _PyEval_EvalFrameDefault + 60455
53 org.python.python 0x000000010077d47a PyEval_EvalCode + 282
54 org.python.python 0x0000000100777ce3 builtin_exec + 483
55 org.python.python 0x00000001006c5144 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
56 org.python.python 0x000000010078d2ef _PyEval_EvalFrameDefault + 60207
57 org.python.python 0x00000001007934d0 _PyEval_Vector + 128
58 org.python.python 0x000000010082a6fd pymain_run_module + 253
59 org.python.python 0x000000010082a1c1 Py_RunMain + 2225
60 org.python.python 0x000000010082b17b pymain_main + 43
61 org.python.python 0x000000010082b14a Py_Main + 42
62 edu.ucsf.cgl.ChimeraX 0x00000001005acd9a main + 122
63 libdyld.dylib 0x00007fff2076df3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff2071fcbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20752e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010202567f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff207261b2 kevent64 + 10
1 QtWebEngineCore 0x0000000113a0fa2a 0x10faaf000 + 66456106
2 QtWebEngineCore 0x0000000113a0f927 0x10faaf000 + 66455847
3 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
4 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
5 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
6 QtWebEngineCore 0x00000001139962ad 0x10faaf000 + 65958573
7 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
8 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
9 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff207261b2 kevent64 + 10
1 QtWebEngineCore 0x0000000113a0fa2a 0x10faaf000 + 66456106
2 QtWebEngineCore 0x0000000113a0f927 0x10faaf000 + 66455847
3 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
4 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
5 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
6 QtWebEngineCore 0x00000001128d43a2 0x10faaf000 + 48386978
7 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
8 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
9 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139ddbef 0x10faaf000 + 66251759
4 QtWebEngineCore 0x00000001139131c9 0x10faaf000 + 65421769
5 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
6 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
7 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
8 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
9 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139a27bf 0x10faaf000 + 66009023
4 QtWebEngineCore 0x00000001139a326c 0x10faaf000 + 66011756
5 QtWebEngineCore 0x00000001139a2e6d 0x10faaf000 + 66010733
6 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff2071fcbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20752e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x00000001139d5d1b 0x10faaf000 + 66219291
3 QtWebEngineCore 0x0000000115aa392d 0x10faaf000 + 100616493
4 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
5 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139ddbef 0x10faaf000 + 66251759
4 QtWebEngineCore 0x00000001139131c9 0x10faaf000 + 65421769
5 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
6 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
7 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
8 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
9 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff207261b2 kevent64 + 10
1 QtWebEngineCore 0x0000000113a0fa2a 0x10faaf000 + 66456106
2 QtWebEngineCore 0x0000000113a0f927 0x10faaf000 + 66455847
3 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
4 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
5 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
6 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
7 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
8 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139ddbef 0x10faaf000 + 66251759
4 QtWebEngineCore 0x00000001139131c9 0x10faaf000 + 65421769
5 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
6 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
7 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
8 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
9 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139ddbef 0x10faaf000 + 66251759
4 QtWebEngineCore 0x00000001139131c9 0x10faaf000 + 65421769
5 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
6 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
7 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
8 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
9 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 11:: NetworkService
0 libsystem_kernel.dylib 0x00007fff207261b2 kevent64 + 10
1 QtWebEngineCore 0x0000000113a0fa2a 0x10faaf000 + 66456106
2 QtWebEngineCore 0x0000000113a0f927 0x10faaf000 + 66455847
3 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
4 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
5 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
6 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
7 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
8 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139ddbef 0x10faaf000 + 66251759
4 QtWebEngineCore 0x00000001139131c9 0x10faaf000 + 65421769
5 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
6 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
7 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
8 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
9 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139a27bf 0x10faaf000 + 66009023
4 QtWebEngineCore 0x00000001139a326c 0x10faaf000 + 66011756
5 QtWebEngineCore 0x00000001139a2ecd 0x10faaf000 + 66010829
6 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139ddbef 0x10faaf000 + 66251759
4 QtWebEngineCore 0x00000001139131c9 0x10faaf000 + 65421769
5 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
6 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
7 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
8 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
9 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2084aebf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2084959f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff208489ac CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff231d8b7a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139ddbef 0x10faaf000 + 66251759
4 QtWebEngineCore 0x00000001139131c9 0x10faaf000 + 65421769
5 QtWebEngineCore 0x000000011398ca5c 0x10faaf000 + 65919580
6 QtWebEngineCore 0x0000000113944998 0x10faaf000 + 65624472
7 QtWebEngineCore 0x00000001139aeeb8 0x10faaf000 + 66059960
8 QtWebEngineCore 0x00000001139af04a 0x10faaf000 + 66060362
9 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
10 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139a27bf 0x10faaf000 + 66009023
4 QtWebEngineCore 0x00000001139a2f9a 0x10faaf000 + 66011034
5 QtWebEngineCore 0x00000001139a2e0d 0x10faaf000 + 66010637
6 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 18:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139a27bf 0x10faaf000 + 66009023
4 QtWebEngineCore 0x00000001139a326c 0x10faaf000 + 66011756
5 QtWebEngineCore 0x00000001139a2ddd 0x10faaf000 + 66010589
6 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 19:
0 libsystem_pthread.dylib 0x00007fff2074e420 start_wqthread + 0
Thread 20:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139a27bf 0x10faaf000 + 66009023
4 QtWebEngineCore 0x00000001139a326c 0x10faaf000 + 66011756
5 QtWebEngineCore 0x00000001139a2ddd 0x10faaf000 + 66010589
6 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 21:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2071d29a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2071d60c mach_msg + 60
2 QtWebEngineCore 0x00000001139dde26 0x10faaf000 + 66252326
3 QtWebEngineCore 0x00000001139a27bf 0x10faaf000 + 66009023
4 QtWebEngineCore 0x00000001139a326c 0x10faaf000 + 66011756
5 QtWebEngineCore 0x00000001139a2e6d 0x10faaf000 + 66010733
6 QtWebEngineCore 0x00000001139d6908 0x10faaf000 + 66222344
7 libsystem_pthread.dylib 0x00007fff207528fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2074e443 thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff2074e420 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff2074e420 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff2074e420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010eeb2e00 rcx: 0x00007fe4f45dd9e8 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007fe4f45dda10 rsp: 0x00007fe4f45dd9e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000010eeb2e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x000000013ce56801 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2072390e rfl: 0x0000000000000246 cr2: 0x0000000100b35068
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
ff ff ff ff 48 89 d8 48-8b 00 48 ff c2 48 39 c3 ....H..H..H..H9.
75 f5 48 8d 3d c5 12 16-00 48 8d b5 70 ff ff ff u.H.=....H..p...
31 c0 e8 bf 83 fe ff 48-8b 05 68 e7 16 00 48 8b 1......H..h...H.
00 48 3b 45 d8 75 0d 48-83 c4 70 5b 41 5c 41 5e .H;E.u.H..p[A\A^
41 5f 5d c3 e8 cd ae 0e-00 66 2e 0f 1f 84 00 00 A_]......f......
00 00 00 0f 1f 00 55 48-89 e5 53 50 48 8b 47 08 ......UH..SPH.G.
[f6]80 a9 00 00 00 40 75-09 31 c0 48 83 c4 08 5b ......@u.1.H...[ /Applications/ChimeraX-1.7.app/Contents/MacOS/ChimeraX
0x1005b9000 - 0x10099cfff +org.python.python (3.11.2, [c] 2001-2023 Python Software Foundation. - 3.11.2) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/Python
0x100ef7000 - 0x100f02fff +math.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/math.cpython-311-darwin.so
0x101013000 - 0x101022fff +_datetime.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_datetime.cpython-311-darwin.so
0x101037000 - 0x10103afff +_typing.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_typing.cpython-311-darwin.so
0x101147000 - 0x10114efff +zlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/zlib.cpython-311-darwin.so
0x10115f000 - 0x101162fff +_bz2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bz2.cpython-311-darwin.so
0x10116f000 - 0x10119efff +_lzma.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_lzma.cpython-311-darwin.so
0x1012b3000 - 0x1012b6fff +_bisect.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bisect.cpython-311-darwin.so
0x1012c3000 - 0x1012c6fff +_random.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_random.cpython-311-darwin.so
0x1012d3000 - 0x1012dafff +_sha512.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_sha512.cpython-311-darwin.so
0x1012e7000 - 0x1012eefff +binascii.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/binascii.cpython-311-darwin.so
0x1012fb000 - 0x101302fff +_struct.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_struct.cpython-311-darwin.so
0x101313000 - 0x101316fff +fcntl.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/fcntl.cpython-311-darwin.so
0x101323000 - 0x101326fff +_posixsubprocess.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_posixsubprocess.cpython-311-darwin.so
0x101333000 - 0x10133afff +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x101447000 - 0x10144afff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x101457000 - 0x10156afff +libarrays.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x101597000 - 0x10159efff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x1016ab000 - 0x101b5efff +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x101cd7000 - 0x1059f6fff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x105cb7000 - 0x1062f9fff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x106334000 - 0x106381fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10638b000 - 0x10639bfff +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x1084ad000 - 0x1084c8fff +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x1084dd000 - 0x1084e0fff +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
0x1084ed000 - 0x108500fff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
0x108619000 - 0x10862cfff +_ctypes.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_ctypes.cpython-311-darwin.so
0x108645000 - 0x108664fff +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
0x10877d000 - 0x108790fff +_pocketfft_internal.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/fft/_pocketfft_internal.cpython-311-darwin.so
0x10879d000 - 0x108810fff +mtrand.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/mtrand.cpython-311-darwin.so
0x108875000 - 0x108894fff +bit_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/bit_generator.cpython-311-darwin.so
0x1088b9000 - 0x1088e8fff +_common.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_common.cpython-311-darwin.so
0x108909000 - 0x108910fff +_hashlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_hashlib.cpython-311-darwin.so
0x108921000 - 0x108b48fff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/libcrypto.1.1.dylib
0x108be9000 - 0x108bf0fff +_blake2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_blake2.cpython-311-darwin.so
0x108bfd000 - 0x108c50fff +_bounded_integers.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_bounded_integers.cpython-311-darwin.so
0x108c81000 - 0x108c90fff +_mt19937.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_mt19937.cpython-311-darwin.so
0x108ca5000 - 0x108cb0fff +_philox.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_philox.cpython-311-darwin.so
0x108cc5000 - 0x108cd4fff +_pcg64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_pcg64.cpython-311-darwin.so
0x108ce9000 - 0x108cf0fff +_sfc64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_sfc64.cpython-311-darwin.so
0x108d01000 - 0x108d90fff +_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_generator.cpython-311-darwin.so
0x108efd000 - 0x108f00fff +_opcode.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_opcode.cpython-311-darwin.so
0x10b00d000 - 0x10b030fff +_geometry.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/geometry/_geometry.cpython-311-darwin.so
0x10b549000 - 0x10b6ccfff +QtCore.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtCore.abi3.so
0x10b8d5000 - 0x10bdd8fff +QtCore (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x10dd9b000 - 0x10ddb2fff +sip.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/sip.cpython-311-darwin.so
0x10ddcb000 - 0x10e076fff +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWidgets.abi3.so
0x10e3db000 - 0x10e896fff +QtWidgets (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets
0x10e9f3000 - 0x10ea7efff +QtDBus (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x10eda3000 - 0x10edb2fff +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x10eddb000 - 0x10ee76fff dyld (852.2) /usr/lib/dyld
0x10eef3000 - 0x10f59afff +QtGui (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtGui.framework/Versions/A/QtGui
0x10f6c7000 - 0x10f82efff +QtGui.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtGui.abi3.so
0x10fa07000 - 0x10fa1afff +QtWebEngineWidgets (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
0x10fa33000 - 0x10fa7efff +QtPrintSupport (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtPrintSupport.framework/Versions/A/QtPrintSupport
0x10faaf000 - 0x119816fff +QtWebEngineCore (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineCore.framework/Versions/A/QtWebEngineCore
0x11a4ab000 - 0x11a88efff +QtQuick (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQuick.framework/Versions/A/QtQuick
0x11a9ef000 - 0x11aa56fff +QtOpenGL (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtOpenGL.framework/Versions/A/QtOpenGL
0x11aa87000 - 0x11ab0efff +QtQmlModels (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQmlModels.framework/Versions/A/QtQmlModels
0x11ab3f000 - 0x11ab72fff +QtWebChannel (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebChannel.framework/Versions/A/QtWebChannel
0x11ab8b000 - 0x11af6efff +QtQml (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQml.framework/Versions/A/QtQml
0x11b02b000 - 0x11b15efff +QtNetwork (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtNetwork.framework/Versions/A/QtNetwork
0x11b1af000 - 0x11b226fff +QtPositioning (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtPositioning.framework/Versions/A/QtPositioning
0x11b24b000 - 0x11b25efff +QtQuickWidgets (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQuickWidgets.framework/Versions/A/QtQuickWidgets
0x11b277000 - 0x11b27efff +QtWebChannel.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebChannel.abi3.so
0x11b28f000 - 0x11b2fefff +QtNetwork.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtNetwork.abi3.so
0x11b3a7000 - 0x11b3d6fff +QtWebEngineCore.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebEngineCore.abi3.so
0x11b43b000 - 0x11b45efff +QtPrintSupport.abi3.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtPrintSupport.abi3.so
0x11b513000 - 0x11b5b2fff +libqcocoa.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/plugins/platforms/libqcocoa.dylib
0x11c2ad000 - 0x11c2bcfff libobjc-trampolines.dylib (824.1) /usr/lib/libobjc-trampolines.dylib
0x11cdd0000 - 0x11cdf7fff +libqmacstyle.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/plugins/styles/libqmacstyle.dylib
0x11ce10000 - 0x11ce1ffff +_socket.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_socket.cpython-311-darwin.so
0x11dc03000 - 0x11dc2efff +pyexpat.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/pyexpat.cpython-311-darwin.so
0x11dd47000 - 0x11dd52fff +array.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/array.cpython-311-darwin.so
0x11dd63000 - 0x11dd66fff +_heapq.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_heapq.cpython-311-darwin.so
0x11dd73000 - 0x11dd76fff +_queue.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_queue.cpython-311-darwin.so
0x11df83000 - 0x11df86fff +grp.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/grp.cpython-311-darwin.so
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0x7fff5571b000 - 0x7fff5571efff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
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0x7fff638b5000 - 0x7fff63dbcfff com.apple.driver.AppleIntelBDWGraphicsGLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelBDWGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelBDWGraphicsGLDriver
0x7fff69813000 - 0x7fff69817fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bc5e000 - 0x7fff6bc64fff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bc65000 - 0x7fff6bc69fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bc6a000 - 0x7fff6bc79fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bc7a000 - 0x7fff6bc7cfff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bc7d000 - 0x7fff6bc85fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bc86000 - 0x7fff6bcb9fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bcba000 - 0x7fff6bcf6fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bcf7000 - 0x7fff6be8afff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6be8b000 - 0x7fff6be95fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6be96000 - 0x7fff6c013fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c014000 - 0x7fff6c03cfff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d2d5000 - 0x7fff6d32dfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e3d7000 - 0x7fff6e3defff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e3df000 - 0x7fff6e4c6fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6fa4c000 - 0x7fff6fa5efff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73d7c000 - 0x7fff73d87fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73f9d000 - 0x7fff73fb5fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff778c4000 - 0x7fff778cbfff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=6.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=6.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 768K 6
Activity Tracing 256K 1
CG backing stores 4320K 12
CG image 212K 21
CoreAnimation 152K 17
CoreGraphics 16K 3
CoreUI image data 3724K 30
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 5.6G 738
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 96K 24
Stack 155.2M 25
Stack Guard 56.0M 1
VM_ALLOCATE 315.9M 197
__DATA 37.9M 632
__DATA_CONST 25.8M 307
__DATA_DIRTY 1707K 210
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 532.0M 253
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 654.6M 619
__UNICODE 588K 1
mapped file 265.8M 47
shared memory 3148K 33
=========== ======= =======
TOTAL 7.8G 3201
TOTAL, minus reserved VM space 7.7G 3201
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/joshua/Desktop/240109_pdbs/cryosparc_P2_J93_map.mrc
Opened cryosparc_P2_J93_map.mrc as #1, grid size 680,680,680, pixel 0.65,
shown at step 1, values float32
> volume #1 region 0,0,0,679,679,679 step 4
> open
> /Users/joshua/Desktop/240109_pdbs/240327_model_chainDescriptions_sequenceValidated.updated.pdb
Summary of feedback from opening
/Users/joshua/Desktop/240109_pdbs/240327_model_chainDescriptions_sequenceValidated.updated.pdb
---
warnings | Ignored bad PDB record found on line 1
SSBOND 1 CYS Aa 26 CYS Aa 77
Ignored bad PDB record found on line 2
SSBOND 2 CYS Af 135 CYS Af 138
Ignored bad PDB record found on line 3
SSBOND 3 CYS Ad 21 CYS Ad 42
Ignored bad PDB record found on line 4
SSBOND 4 CYS Ad 39 CYS Ad 42
Ignored bad PDB record found on line 5
SSBOND 5 CYS Ab 56 CYS Ab 59
Chain information for
240327_model_chainDescriptions_sequenceValidated.updated.pdb #2
---
Chain | Description
A5 | No description available
A7 | No description available
A8 | No description available
AA | No description available
AB | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG | No description available
AH | No description available
AI | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN | No description available
AO | No description available
AP | No description available
AQ | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV | No description available
AW | No description available
AX | No description available
AY | No description available
AZ | No description available
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ae | No description available
Af | No description available
B2 | No description available
CA | No description available
CB | No description available
CC | No description available
CD | No description available
CE | No description available
CF | No description available
CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CQ | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
DA DB | No description available
DC | No description available
> hide atoms
> show cartoons
> select /CM:2-133
2204 atoms, 2213 bonds, 132 residues, 1 model selected
> view sel
> volume #1 change image level -0.02339,0 level 0.1885,0.8 level 0.6121,1
> volume #1 step 1
> volume #1 style mesh
> select /A5:3362
31 atoms, 32 bonds, 1 residue, 1 model selected
> select up
96999 atoms, 104639 bonds, 3022 residues, 1 model selected
> select down
31 atoms, 32 bonds, 1 residue, 1 model selected
> select /CM:129
22 atoms, 21 bonds, 1 residue, 1 model selected
> select up
504 atoms, 505 bonds, 27 residues, 1 model selected
> select up
2204 atoms, 2213 bonds, 132 residues, 1 model selected
> select clear
> select /A5:3354
30 atoms, 31 bonds, 1 residue, 1 model selected
> select add /A5:3352
64 atoms, 67 bonds, 2 residues, 1 model selected
> select up
96999 atoms, 104639 bonds, 3022 residues, 1 model selected
> select down
64 atoms, 67 bonds, 2 residues, 1 model selected
> select /CW:1-103
1447 atoms, 1457 bonds, 88 residues, 1 model selected
> select /CW:1-103
1447 atoms, 1457 bonds, 88 residues, 1 model selected
> view sel
> volume #1 level 0.08144
> select /CW:95
10 atoms, 9 bonds, 1 residue, 1 model selected
> select up
135 atoms, 134 bonds, 8 residues, 1 model selected
> select up
337 atoms, 337 bonds, 22 residues, 1 model selected
> view sel
> volume #1 level 0.06563
> select up
443 atoms, 443 bonds, 29 residues, 1 model selected
> view sel
> select /Ae:74-130
752 atoms, 755 bonds, 45 residues, 1 model selected
> select /Ae:74-130
752 atoms, 755 bonds, 45 residues, 1 model selected
> view sel
> select /CU:18-117
1692 atoms, 1706 bonds, 100 residues, 1 model selected
> select /CU:18-117
1692 atoms, 1706 bonds, 100 residues, 1 model selected
> view sel
> ui tool show "Show Sequence Viewer"
> sequence chain /CU
Alignment identifier is 2/CU
> ui tool show "Side View"
> ui mousemode right zoom
> select /CO:2-202
3328 atoms, 3359 bonds, 201 residues, 1 model selected
> view sel
> select /AA:2-212
3264 atoms, 3297 bonds, 207 residues, 1 model selected
> view sel
> select /Cg:2-105
1759 atoms, 1769 bonds, 104 residues, 1 model selected
> view sel
> select /CL:2-205
3388 atoms, 3413 bonds, 204 residues, 1 model selected
> view sel
> select /Ci:1-104
1754 atoms, 1763 bonds, 104 residues, 1 model selected
> view sel
> select /AM:22-140
1808 atoms, 1821 bonds, 117 residues, 1 model selected
> view sel
> close session
> open /Users/joshua/Desktop/240109_pdbs/cryosparc_P2_J93_map.mrc format mrc
Opened cryosparc_P2_J93_map.mrc as #1, grid size 680,680,680, pixel 0.65,
shown at step 1, values float32
> volume #1 region 0,0,0,679,679,679 step 4
> open /Users/joshua/Desktop/240109_pdbs/240308_rRNA_RPGs_tRNAs_mRNA-
> postCoot.pdb
Summary of feedback from opening
/Users/joshua/Desktop/240109_pdbs/240308_rRNA_RPGs_tRNAs_mRNA-postCoot.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS D 9
MET D 28 1 20
Start residue of secondary structure not found: HELIX 2 2 THR D 57 LEU D 61 1
5
Start residue of secondary structure not found: HELIX 3 3 GLU D 63 GLY D 65 1
3
Start residue of secondary structure not found: HELIX 4 4 ARG D 66 ARG D 78 1
13
Start residue of secondary structure not found: HELIX 5 5 ARG D 96 LEU D 98 1
3
974 messages similar to the above omitted
240308_rRNA_RPGs_tRNAs_mRNA-postCoot.pdb title:
Alphafold monomer V2.0 prediction for guanine nucleotide-binding protein
subunit β-2-like 1 (Q21215) [more info...]
Chain information for 240308_rRNA_RPGs_tRNAs_mRNA-postCoot.pdb #2
---
Chain | Description
A5 | No description available
A7 | No description available
A8 | No description available
AA | No description available
AB | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG | No description available
AH | No description available
AI | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN | No description available
AO | No description available
AP | No description available
AQ | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV | No description available
AW | No description available
AX | No description available
AY | No description available
AZ | No description available
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ae | No description available
Af | No description available
Ag | No description available
Az | No description available
B2 | No description available
CA | No description available
CB | No description available
CC | No description available
CD | No description available
CE | No description available
CF | No description available
CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CQ | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Cz | No description available
DA DB | No description available
DC | No description available
Non-standard residues in 240308_rRNA_RPGs_tRNAs_mRNA-postCoot.pdb #2
---
U — (U)
> hide atoms
> show cartoons
> select /Cr:1-117
898 atoms, 909 bonds, 117 residues, 1 model selected
> view sel
> volume #1 change image level -0.02339,0 level 0.1885,0.8 level 0.6121,1
> volume #1 step 1
> volume #1 level 0.06387
> volume #1 level 0.03928
> volume #1 level 0.04
> volume #1 level 0.06
> volume #1 style mesh
> view sel
> select /CE:63-217
1116 atoms, 1140 bonds, 139 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain /CE
Alignment identifier is 2/CE
> sequence chain /Cr
Alignment identifier is 2/Cr
> select /Cr:59
4 atoms, 3 bonds, 1 residue, 1 model selected
> select /Cr:59-101
318 atoms, 321 bonds, 43 residues, 1 model selected
> close session
> open /Users/joshua/Desktop/240109_pdbs/cryosparc_P2_J93_map.mrc format mrc
Opened cryosparc_P2_J93_map.mrc as #1, grid size 680,680,680, pixel 0.65,
shown at step 1, values float32
> volume #1 region 0,0,0,679,679,679 step 4
> open
> /Users/joshua/Desktop/240109_pdbs/240327_model_chainDescriptions_sequenceValidated.updated.pdb
Summary of feedback from opening
/Users/joshua/Desktop/240109_pdbs/240327_model_chainDescriptions_sequenceValidated.updated.pdb
---
warnings | Ignored bad PDB record found on line 1
SSBOND 1 CYS Aa 26 CYS Aa 77
Ignored bad PDB record found on line 2
SSBOND 2 CYS Af 135 CYS Af 138
Ignored bad PDB record found on line 3
SSBOND 3 CYS Ad 21 CYS Ad 42
Ignored bad PDB record found on line 4
SSBOND 4 CYS Ad 39 CYS Ad 42
Ignored bad PDB record found on line 5
SSBOND 5 CYS Ab 56 CYS Ab 59
Chain information for
240327_model_chainDescriptions_sequenceValidated.updated.pdb #2
---
Chain | Description
A5 | No description available
A7 | No description available
A8 | No description available
AA | No description available
AB | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG | No description available
AH | No description available
AI | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN | No description available
AO | No description available
AP | No description available
AQ | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV | No description available
AW | No description available
AX | No description available
AY | No description available
AZ | No description available
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ae | No description available
Af | No description available
B2 | No description available
CA | No description available
CB | No description available
CC | No description available
CD | No description available
CE | No description available
CF | No description available
CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CQ | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
DA DB | No description available
DC | No description available
> hide atoms
> show cartoons
> select /DC:1-10
302 atoms, 320 bonds, 10 residues, 1 model selected
> view sel
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 302 atom styles
> select /DA:34
34 atoms, 36 bonds, 1 residue, 1 model selected
> select add /DB:37
68 atoms, 72 bonds, 2 residues, 1 model selected
> select up
4896 atoms, 5280 bonds, 152 residues, 1 model selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 4896 atom styles
> show sel atoms
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.14
OpenGL renderer: Intel(R) Iris(TM) Graphics 6100
OpenGL vendor: Intel Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro12,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.7 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 481.0.0.0.0
SMC Version (system): 2.28f7
Software:
System Software Overview:
System Version: macOS 11.7.10 (20G1427)
Kernel Version: Darwin 20.6.0
Time since boot: 12 days 17:28
Graphics/Displays:
Intel Iris Graphics 6100:
Chipset Model: Intel Iris Graphics 6100
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x162b
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
LG ULTRAWIDE:
Resolution: 2560 x 1080 (UW-UXGA - Ultra Wide - Ultra Extended Graphics Array)
UI Looks like: 2560 x 1080 @ 60.00Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.1
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.13
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.3
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.2
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.0
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.0
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.5.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.3
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.8
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
Pillow: 10.0.1
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.7
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.5
sphinxcontrib-htmlhelp: 2.0.4
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.6
sphinxcontrib-serializinghtml: 1.1.9
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.3
urllib3: 2.1.0
wcwidth: 0.2.12
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 19 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 19 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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