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Opened 18 months ago
Closed 18 months ago
#15028 closed defect (limitation)
Session save failed: Can't convert object of type: <enum 'Matrix'>
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | chimerax-programmers | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.4.1-arm64-arm-64bit
ChimeraX Version: 1.8.dev202404021803 (2024-04-02 18:03:23 UTC)
Description
Session save failed.
Log:
> diffplot residues sel
Associated 4XV9_A chain A to 4XV9_A with 0 mismatches
Associated 4FK3_B chain B to 4FK3_B with 0 mismatches
Associated 4R5Y_A chain A to 4R5Y_A with 0 mismatches
Associated 4R5Y_B chain B to 4R5Y_B with 0 mismatches
Associated 4XV1_B chain B to 4XV1_B with 0 mismatches
Associated 4XV2_A chain A to 4XV2_A with 0 mismatches
Associated 4XV2_B chain B to 4XV2_B with 0 mismatches
Associated 4XV3_A chain A to 4XV3_A with 0 mismatches
Associated 4XV3_B chain B to 4XV3_B with 0 mismatches
Associated 3OG7_B chain B to 3OG7_B with 0 mismatches
Associated 6XLO_A chain A to 6XLO_A with 0 mismatches
Associated 6XLO_B chain B to 6XLO_B with 0 mismatches
Associated 7K0V_A chain A to 7K0V_A with 0 mismatches
Associated 7K0V_B chain B to 7K0V_B with 0 mismatches
Associated 7K0V_C chain C to 7K0V_C with 0 mismatches
Associated 7K0V_D chain D to 7K0V_D with 0 mismatches
Associated 4WO5_A chain A to 4WO5_A with 0 mismatches
Associated 5ITA_A chain A to 5ITA_A with 0 mismatches
Associated 5CSW_A chain A to 5CSW_A with 0 mismatches
Associated 5CSW_B chain B to 5CSW_B with 0 mismatches
Associated 3C4C_A chain A to 3C4C_A with 0 mismatches
Associated 3C4C_B chain B to 3C4C_B with 0 mismatches
Associated 4JVG_A chain A to 4JVG_A with 0 mismatches
Associated 4JVG_B chain B to 4JVG_B with 0 mismatches
Associated 4JVG_C chain C to 4JVG_C with 0 mismatches
Associated 4JVG_D chain D to 4JVG_D with 0 mismatches
Associated 6CAD_A chain A to 6CAD_A with 0 mismatches
Associated 6CAD_B chain B to 6CAD_B with 0 mismatches
Associated 6NSQ_A chain A to 6NSQ_A with 0 mismatches
Associated 6NSQ_B chain B to 6NSQ_B with 0 mismatches
Associated 6UUO_A chain A to 6UUO_A with 0 mismatches
Associated 6UUO_B chain B to 6UUO_B with 0 mismatches
Associated 8C7X_A chain A to 8C7X_A with 0 mismatches
Associated 8F7O_A chain A to 8F7O_A with 0 mismatches
Associated 8F7O_B chain B to 8F7O_B with 0 mismatches
Associated 8F7P_A chain A to 8F7P_A with 0 mismatches
Associated 6P3D_A chain A to 6P3D_A with 0 mismatches
Associated 6P7G_A chain A to 6P7G_A with 0 mismatches
Associated 6P7G_B chain B to 6P7G_B with 0 mismatches
Associated 6P7G_C chain C to 6P7G_C with 0 mismatches
Associated 5HI2_A chain A to 5HI2_A with 0 mismatches
Associated 5HID_A chain A to 5HID_A with 0 mismatches
Associated 8C7Y_A chain A to 8C7Y_A with 0 mismatches
Associated 4RZV_A chain A to 4RZV_A with 0 mismatches
Associated 4RZV_B chain B to 4RZV_B with 0 mismatches
Associated 4RZW_A chain A to 4RZW_A with 0 mismatches
Associated 6V34_A chain A to 6V34_A with 0 mismatches
Associated 6U2H_C chain C to 6U2H_C with 0 mismatches
Associated 6U2H_D chain D to 6U2H_D with 0 mismatches
Associated 6XAG_C chain C to 6XAG_C with 0 mismatches
Associated 5JRQ_A chain A to 5JRQ_A with 0 mismatches
Associated 5JRQ_B chain B to 5JRQ_B with 0 mismatches
Associated 5JSM_A chain A to 5JSM_A with 0 mismatches
Associated 5JSM_B chain B to 5JSM_B with 0 mismatches
Associated 5JSM_C chain C to 5JSM_C with 0 mismatches
Associated 5JSM_D chain D to 5JSM_D with 0 mismatches
Associated 5JT2_A chain A to 5JT2_A with 0 mismatches
Associated 5JT2_B chain B to 5JT2_B with 0 mismatches
Associated 5JT2_C chain C to 5JT2_C with 0 mismatches
Associated 5JT2_D chain D to 5JT2_D with 0 mismatches
Associated 4CQE_A chain A to 4CQE_A with 0 mismatches
Associated 7P3V_A chain A to 7P3V_A with 0 mismatches
Associated 7MFD_A chain A to 7MFD_A with 0 mismatches
Associated 7MFE_A chain A to 7MFE_A with 0 mismatches
Associated 7MFF_A chain A to 7MFF_A with 0 mismatches
Associated 7MFF_B chain B to 7MFF_B with 0 mismatches
Associated 6UAN_B chain B to 6UAN_B with 0 mismatches
Associated 6UAN_C chain C to 6UAN_C with 0 mismatches
Associated 4MBJ_A chain A to 4MBJ_A with 0 mismatches
Associated 4MBJ_B chain B to 4MBJ_B with 0 mismatches
Associated 6Q0K_A chain A to 6Q0K_A with 0 mismatches
Associated 6Q0K_B chain B to 6Q0K_B with 0 mismatches
Associated 6Q0J_A chain A to 6Q0J_A with 0 mismatches
Associated 6Q0J_B chain B to 6Q0J_B with 0 mismatches
Associated 6Q0T_A chain A to 6Q0T_A with 0 mismatches
Associated 6Q0T_B chain B to 6Q0T_B with 0 mismatches
Associated 6NYB_A chain A to 6NYB_A with 0 mismatches
Associated 8DGS_A chain A to 8DGS_A with 0 mismatches
Associated 8DGT_A chain A to 8DGT_A with 0 mismatches
Associated 3D4Q_A chain A to 3D4Q_A with 0 mismatches
Associated 3D4Q_B chain B to 3D4Q_B with 0 mismatches
Associated 3PPJ_A chain A to 3PPJ_A with 0 mismatches
Associated 3PPJ_B chain B to 3PPJ_B with 0 mismatches
Associated 3PPK_A chain A to 3PPK_A with 0 mismatches
Associated 3PPK_B chain B to 3PPK_B with 0 mismatches
Associated 3PRF_A chain A to 3PRF_A with 0 mismatches
Associated 3PRF_B chain B to 3PRF_B with 0 mismatches
Associated 3PRI_A chain A to 3PRI_A with 0 mismatches
Associated 3PRI_B chain B to 3PRI_B with 0 mismatches
Associated 3PSB_A chain A to 3PSB_A with 0 mismatches
Associated 3PSB_B chain B to 3PSB_B with 0 mismatches
Associated 3PSD_A chain A to 3PSD_A with 0 mismatches
Associated 3PSD_B chain B to 3PSD_B with 0 mismatches
Associated 3Q4C_A chain A to 3Q4C_A with 0 mismatches
Associated 3Q4C_B chain B to 3Q4C_B with 0 mismatches
Associated 3SKC_A chain A to 3SKC_A with 0 mismatches
Associated 3SKC_B chain B to 3SKC_B with 0 mismatches
Associated 3TV4_A chain A to 3TV4_A with 0 mismatches
Associated 3TV4_B chain B to 3TV4_B with 0 mismatches
Associated 3TV6_A chain A to 3TV6_A with 0 mismatches
Associated 3TV6_B chain B to 3TV6_B with 0 mismatches
Associated 4E26_A chain A to 4E26_A with 0 mismatches
Associated 4E26_B chain B to 4E26_B with 0 mismatches
Associated 4E4X_A chain A to 4E4X_A with 0 mismatches
Associated 4E4X_B chain B to 4E4X_B with 0 mismatches
Associated 4EHE_A chain A to 4EHE_A with 0 mismatches
Associated 4EHE_B chain B to 4EHE_B with 0 mismatches
Associated 4G9C_A chain A to 4G9C_A with 0 mismatches
Associated 4G9C_B chain B to 4G9C_B with 0 mismatches
Associated 4PP7_A chain A to 4PP7_A with 0 mismatches
Associated 4PP7_B chain B to 4PP7_B with 0 mismatches
Associated 6U2G_B chain B to 6U2G_B with 0 mismatches
Associated 5FD2_A chain A to 5FD2_A with 0 mismatches
Associated 5FD2_B chain B to 5FD2_B with 0 mismatches
Associated 6PP9_A chain A to 6PP9_A with 0 mismatches
Associated 6V2U_A chain A to 6V2U_A with 0 mismatches
Associated 6V2U_B chain B to 6V2U_B with 0 mismatches
Associated 6V2W_A chain A to 6V2W_A with 0 mismatches
Associated 7M0T_A chain A to 7M0T_A with 0 mismatches
Associated 7M0U_A chain A to 7M0U_A with 0 mismatches
Associated 7M0V_A chain A to 7M0V_A with 0 mismatches
Associated 7M0W_A chain A to 7M0W_A with 0 mismatches
Associated 7M0X_A chain A to 7M0X_A with 0 mismatches
Associated 7M0Y_A chain A to 7M0Y_A with 0 mismatches
Associated 4MNE_B chain B to 4MNE_B with 0 mismatches
Associated 4MNE_C chain C to 4MNE_C with 0 mismatches
Associated 4MNE_F chain F to 4MNE_F with 0 mismatches
Associated 4MNE_G chain G to 4MNE_G with 0 mismatches
Associated 3II5_A chain A to 3II5_A with 0 mismatches
Associated 3II5_B chain B to 3II5_B with 0 mismatches
Associated 7SHV_A chain A to 7SHV_A with 0 mismatches
Associated 4MNF_A chain A to 4MNF_A with 0 mismatches
Associated 4MNF_B chain B to 4MNF_B with 0 mismatches
Associated 7ZR0_K chain K to 7ZR0_K with 0 mismatches
Associated 7ZR5_K chain K to 7ZR5_K with 0 mismatches
Associated 7ZR6_K chain K to 7ZR6_K with 0 mismatches
Associated 3IDP_A chain A to 3IDP_A with 0 mismatches
Associated 3IDP_B chain B to 3IDP_B with 0 mismatches
Associated 4EHG_A chain A to 4EHG_A with 0 mismatches
Associated 4EHG_B chain B to 4EHG_B with 0 mismatches
Associated 4G9R_A chain A to 4G9R_A with 0 mismatches
Associated 4G9R_B chain B to 4G9R_B with 0 mismatches
Associated 5C9C_A chain A to 5C9C_A with 0 mismatches
Associated 2FB8_A chain A to 2FB8_A with 0 mismatches
Associated 2FB8_B chain B to 2FB8_B with 0 mismatches
Associated 5CT7_A chain A to 5CT7_A with 0 mismatches
Associated 5CT7_B chain B to 5CT7_B with 0 mismatches
Associated 5VAL_A chain A to 5VAL_A with 0 mismatches
Associated 5VAL_B chain B to 5VAL_B with 0 mismatches
Associated 5VAM_A chain A to 5VAM_A with 0 mismatches
Associated 5VAM_B chain B to 5VAM_B with 0 mismatches
Associated 6B8U_A chain A to 6B8U_A with 0 mismatches
Associated 6B8U_B chain B to 6B8U_B with 0 mismatches
Associated 6N0Q_A chain A to 6N0Q_A with 0 mismatches
Associated 6N0Q_B chain B to 6N0Q_B with 0 mismatches
Associated 4DBN_A chain A to 4DBN_A with 0 mismatches
Associated 4DBN_B chain B to 4DBN_B with 0 mismatches
Associated 4FC0_A chain A to 4FC0_A with 0 mismatches
Associated 4FC0_B chain B to 4FC0_B with 0 mismatches
Associated 4KSP_A chain A to 4KSP_A with 0 mismatches
Associated 4KSP_B chain B to 4KSP_B with 0 mismatches
Associated 4KSQ_A chain A to 4KSQ_A with 0 mismatches
Associated 3Q96_A chain A to 3Q96_A with 0 mismatches
Associated 4YHT_A chain A to 4YHT_A with 0 mismatches
Associated 4H58_A chain A to 4H58_A with 0 mismatches
Associated 4H58_B chain B to 4H58_B with 0 mismatches
Associated 6N0P_A chain A to 6N0P_A with 0 mismatches
Associated 1UWH_A chain A to 1UWH_A with 0 mismatches
Associated 1UWJ_A chain A to 1UWJ_A with 0 mismatches
Associated 5HIE_A chain A to 5HIE_A with 0 mismatches
Associated 5HIE_B chain B to 5HIE_B with 0 mismatches
Associated 5HIE_C chain C to 5HIE_C with 0 mismatches
Associated 3OMV_A chain A to 3OMV_A with 0 mismatches
Associated 3OMV_B chain B to 3OMV_B with 0 mismatches
Associated 8CHF_A chain A to 8CHF_A with 0 mismatches
Associated 8CHF_B chain B to 8CHF_B with 0 mismatches
Associated 8CPD_A chain A to 8CPD_A with 0 mismatches
Associated 7Z37_CP1 chain CP1 to 7Z37_CP1 with 0 mismatches
Associated 8GAE_D chain D to 8GAE_D with 0 mismatches
Disassociated 4xv9 chain A from #1/A
Disassociated 4FK3_A chain B from 4FK3_A
Disassociated 4FK3_B chain A from 4FK3_A
Disassociated 4R5Y_A chain B from 4FK3_A
Disassociated 4R5Y_B chain A from 4FK3_A
Disassociated 4XV1_A chain B from 4XV1_A
Disassociated 4XV1_B chain A from 4XV1_A
Disassociated 4XV2_A chain B from 4XV1_A
Disassociated 4XV2_B chain A from 4XV1_A
Disassociated 4XV3_A chain B from 4XV1_A
Disassociated 4XV3_B chain A from 4XV1_A
Disassociated 3OG7_A chain B from 3OG7_A
Disassociated 3OG7_B chain A from 3OG7_A
Disassociated 6XLO_A chain B from 6XFP_A
Disassociated 6XLO_B chain A from 6XFP_A
Disassociated 7K0V_A chain B from 6XFP_A
Disassociated 7K0V_A chain C from 6XFP_A
Disassociated 7K0V_A chain D from 6XFP_A
Disassociated 7K0V_B chain A from 6XFP_A
Disassociated 7K0V_B chain C from 6XFP_A
Disassociated 7K0V_B chain D from 6XFP_A
Disassociated 7K0V_C chain A from 6XFP_A
Disassociated 7K0V_C chain B from 6XFP_A
Disassociated 7K0V_C chain D from 6XFP_A
Disassociated 7K0V_D chain A from 6XFP_A
Disassociated 7K0V_D chain B from 6XFP_A
Disassociated 7K0V_D chain C from 6XFP_A
Disassociated 4WO5_A chain B from 4WO5_B
Disassociated 4WO5_B chain A from 4WO5_B
Disassociated 5ITA_A chain B from 5ITA_B
Disassociated 5ITA_B chain A from 5ITA_B
Disassociated 5CSW_A chain B from 5CSX_A
Disassociated 5CSW_B chain A from 5CSX_A
Disassociated 3C4C_A chain B from 8C7X_B
Disassociated 3C4C_B chain A from 8C7X_B
Disassociated 4JVG_A chain B from 8C7X_B
Disassociated 4JVG_A chain C from 8C7X_B
Disassociated 4JVG_A chain D from 8C7X_B
Disassociated 4JVG_B chain A from 8C7X_B
Disassociated 4JVG_B chain C from 8C7X_B
Disassociated 4JVG_B chain D from 8C7X_B
Disassociated 4JVG_C chain B from 8C7X_B
Disassociated 4JVG_C chain A from 8C7X_B
Disassociated 4JVG_C chain D from 8C7X_B
Disassociated 4JVG_D chain B from 8C7X_B
Disassociated 4JVG_D chain A from 8C7X_B
Disassociated 4JVG_D chain C from 8C7X_B
Disassociated 6CAD_A chain B from 8C7X_B
Disassociated 6CAD_B chain A from 8C7X_B
Disassociated 6NSQ_A chain B from 8C7X_B
Disassociated 6NSQ_B chain A from 8C7X_B
Disassociated 6UUO_A chain B from 8C7X_B
Disassociated 6UUO_B chain A from 8C7X_B
Disassociated 8C7X_A chain B from 8C7X_B
Disassociated 8C7X_B chain A from 8C7X_B
Disassociated 8F7O_A chain B from 8F7P_B
Disassociated 8F7O_B chain A from 8F7P_B
Disassociated 8F7P_A chain B from 8F7P_B
Disassociated 8F7P_B chain A from 8F7P_B
Disassociated 6P7G_A chain B from 6P7G_D
Disassociated 6P7G_A chain C from 6P7G_D
Disassociated 6P7G_A chain D from 6P7G_D
Disassociated 6P7G_B chain A from 6P7G_D
Disassociated 6P7G_B chain C from 6P7G_D
Disassociated 6P7G_B chain D from 6P7G_D
Disassociated 6P7G_C chain A from 6P7G_D
Disassociated 6P7G_C chain B from 6P7G_D
Disassociated 6P7G_C chain D from 6P7G_D
Disassociated 6P7G_D chain A from 6P7G_D
Disassociated 6P7G_D chain B from 6P7G_D
Disassociated 6P7G_D chain C from 6P7G_D
Disassociated 5HID_A chain B from 5HID_B
Disassociated 5HID_B chain A from 5HID_B
Disassociated 8C7Y_A chain B from 8C7Y_B
Disassociated 8C7Y_B chain A from 8C7Y_B
Disassociated 4RZV_A chain B from 4RZW_B
Disassociated 4RZV_B chain A from 4RZW_B
Disassociated 4RZW_A chain B from 4RZW_B
Disassociated 4RZW_B chain A from 4RZW_B
Disassociated 6V34_A chain B from 6V34_B
Disassociated 6V34_B chain A from 6V34_B
Disassociated 6U2H_C chain D from 6XAG_D
Disassociated 6U2H_D chain C from 6XAG_D
Disassociated 6XAG_C chain D from 6XAG_D
Disassociated 6XAG_D chain C from 6XAG_D
Disassociated 5JRQ_A chain B from 4CQE_B
Disassociated 5JRQ_B chain A from 4CQE_B
Disassociated 5JSM_A chain B from 4CQE_B
Disassociated 5JSM_A chain C from 4CQE_B
Disassociated 5JSM_A chain D from 4CQE_B
Disassociated 5JSM_B chain A from 4CQE_B
Disassociated 5JSM_B chain C from 4CQE_B
Disassociated 5JSM_B chain D from 4CQE_B
Disassociated 5JSM_C chain A from 4CQE_B
Disassociated 5JSM_C chain B from 4CQE_B
Disassociated 5JSM_C chain D from 4CQE_B
Disassociated 5JSM_D chain A from 4CQE_B
Disassociated 5JSM_D chain B from 4CQE_B
Disassociated 5JSM_D chain C from 4CQE_B
Disassociated 5JT2_A chain B from 4CQE_B
Disassociated 5JT2_A chain C from 4CQE_B
Disassociated 5JT2_A chain D from 4CQE_B
Disassociated 5JT2_B chain A from 4CQE_B
Disassociated 5JT2_B chain C from 4CQE_B
Disassociated 5JT2_B chain D from 4CQE_B
Disassociated 5JT2_C chain A from 4CQE_B
Disassociated 5JT2_C chain B from 4CQE_B
Disassociated 5JT2_C chain D from 4CQE_B
Disassociated 5JT2_D chain A from 4CQE_B
Disassociated 5JT2_D chain B from 4CQE_B
Disassociated 5JT2_D chain C from 4CQE_B
Disassociated 4CQE_A chain B from 4CQE_B
Disassociated 4CQE_B chain A from 4CQE_B
Disassociated 7P3V_A chain B from 7P3V_B
Disassociated 7P3V_B chain A from 7P3V_B
Disassociated 7MFF_A chain B from 7SHV_B
Disassociated 7MFF_B chain A from 7SHV_B
Disassociated 6UAN_B chain C from 7SHV_B
Disassociated 6UAN_C chain B from 7SHV_B
Disassociated 4MBJ_A chain B from 7SHV_B
Disassociated 4MBJ_B chain A from 7SHV_B
Disassociated 6Q0K_A chain B from 7SHV_B
Disassociated 6Q0K_B chain A from 7SHV_B
Disassociated 6Q0J_A chain B from 7SHV_B
Disassociated 6Q0J_B chain A from 7SHV_B
Disassociated 6Q0T_A chain B from 7SHV_B
Disassociated 6Q0T_B chain A from 7SHV_B
Disassociated 3D4Q_A chain B from 7SHV_B
Disassociated 3D4Q_B chain A from 7SHV_B
Disassociated 3PPJ_A chain B from 7SHV_B
Disassociated 3PPJ_B chain A from 7SHV_B
Disassociated 3PPK_A chain B from 7SHV_B
Disassociated 3PPK_B chain A from 7SHV_B
Disassociated 3PRF_A chain B from 7SHV_B
Disassociated 3PRF_B chain A from 7SHV_B
Disassociated 3PRI_A chain B from 7SHV_B
Disassociated 3PRI_B chain A from 7SHV_B
Disassociated 3PSB_A chain B from 7SHV_B
Disassociated 3PSB_B chain A from 7SHV_B
Disassociated 3PSD_A chain B from 7SHV_B
Disassociated 3PSD_B chain A from 7SHV_B
Disassociated 3Q4C_A chain B from 7SHV_B
Disassociated 3Q4C_B chain A from 7SHV_B
Disassociated 3SKC_A chain B from 7SHV_B
Disassociated 3SKC_B chain A from 7SHV_B
Disassociated 3TV4_A chain B from 7SHV_B
Disassociated 3TV4_B chain A from 7SHV_B
Disassociated 3TV6_A chain B from 7SHV_B
Disassociated 3TV6_B chain A from 7SHV_B
Disassociated 4E26_A chain B from 7SHV_B
Disassociated 4E26_B chain A from 7SHV_B
Disassociated 4E4X_A chain B from 7SHV_B
Disassociated 4E4X_B chain A from 7SHV_B
Disassociated 4EHE_A chain B from 7SHV_B
Disassociated 4EHE_B chain A from 7SHV_B
Disassociated 4G9C_A chain B from 7SHV_B
Disassociated 4G9C_B chain A from 7SHV_B
Disassociated 4PP7_A chain B from 7SHV_B
Disassociated 4PP7_B chain A from 7SHV_B
Disassociated 5FD2_A chain B from 7SHV_B
Disassociated 5FD2_B chain A from 7SHV_B
Disassociated 6V2U_A chain B from 7M0Z_A
Disassociated 6V2U_B chain A from 7M0Z_A
Disassociated 4MNE_B chain C from 7SHV_B
Disassociated 4MNE_B chain F from 7SHV_B
Disassociated 4MNE_B chain G from 7SHV_B
Disassociated 4MNE_C chain B from 7SHV_B
Disassociated 4MNE_C chain F from 7SHV_B
Disassociated 4MNE_C chain G from 7SHV_B
Disassociated 4MNE_F chain B from 7SHV_B
Disassociated 4MNE_F chain C from 7SHV_B
Disassociated 4MNE_F chain G from 7SHV_B
Disassociated 4MNE_G chain B from 7SHV_B
Disassociated 4MNE_G chain C from 7SHV_B
Disassociated 4MNE_G chain F from 7SHV_B
Disassociated 3II5_A chain B from 7SHV_B
Disassociated 3II5_B chain A from 7SHV_B
Disassociated 7SHV_A chain B from 7SHV_B
Disassociated 7SHV_B chain A from 7SHV_B
Disassociated 4MNF_A chain B from 5C9C_B
Disassociated 4MNF_B chain A from 5C9C_B
Disassociated 3IDP_A chain B from 5C9C_B
Disassociated 3IDP_B chain A from 5C9C_B
Disassociated 4EHG_A chain B from 5C9C_B
Disassociated 4EHG_B chain A from 5C9C_B
Disassociated 4G9R_A chain B from 5C9C_B
Disassociated 4G9R_B chain A from 5C9C_B
Disassociated 5C9C_A chain B from 5C9C_B
Disassociated 5C9C_B chain A from 5C9C_B
Disassociated 2FB8_A chain B from 4KSQ_B
Disassociated 2FB8_B chain A from 4KSQ_B
Disassociated 5CT7_A chain B from 4KSQ_B
Disassociated 5CT7_B chain A from 4KSQ_B
Disassociated 5VAL_A chain B from 4KSQ_B
Disassociated 5VAL_B chain A from 4KSQ_B
Disassociated 5VAM_A chain B from 4KSQ_B
Disassociated 5VAM_B chain A from 4KSQ_B
Disassociated 6B8U_A chain B from 4KSQ_B
Disassociated 6B8U_B chain A from 4KSQ_B
Disassociated 6N0Q_A chain B from 4KSQ_B
Disassociated 6N0Q_B chain A from 4KSQ_B
Disassociated 4DBN_A chain B from 4KSQ_B
Disassociated 4DBN_B chain A from 4KSQ_B
Disassociated 4FC0_A chain B from 4KSQ_B
Disassociated 4FC0_B chain A from 4KSQ_B
Disassociated 4KSP_A chain B from 4KSQ_B
Disassociated 4KSP_B chain A from 4KSQ_B
Disassociated 4KSQ_A chain B from 4KSQ_B
Disassociated 4KSQ_B chain A from 4KSQ_B
Disassociated 3Q96_A chain B from 3Q96_B
Disassociated 3Q96_B chain A from 3Q96_B
Disassociated 4YHT_A chain B from 4YHT_B
Disassociated 4YHT_B chain A from 4YHT_B
Disassociated 4H58_A chain B from 4H58_C
Disassociated 4H58_A chain C from 4H58_C
Disassociated 4H58_B chain A from 4H58_C
Disassociated 4H58_B chain C from 4H58_C
Disassociated 4H58_C chain A from 4H58_C
Disassociated 4H58_C chain B from 4H58_C
Disassociated 6N0P_A chain B from 6N0P_B
Disassociated 6N0P_B chain A from 6N0P_B
Disassociated 1UWH_A chain B from 1UWH_B
Disassociated 1UWH_B chain A from 1UWH_B
Disassociated 1UWJ_A chain B from 1UWJ_B
Disassociated 1UWJ_B chain A from 1UWJ_B
Disassociated 5HIE_A chain B from 5HIE_D
Disassociated 5HIE_A chain C from 5HIE_D
Disassociated 5HIE_A chain D from 5HIE_D
Disassociated 5HIE_B chain A from 5HIE_D
Disassociated 5HIE_B chain C from 5HIE_D
Disassociated 5HIE_B chain D from 5HIE_D
Disassociated 5HIE_C chain A from 5HIE_D
Disassociated 5HIE_C chain B from 5HIE_D
Disassociated 5HIE_C chain D from 5HIE_D
Disassociated 5HIE_D chain A from 5HIE_D
Disassociated 5HIE_D chain B from 5HIE_D
Disassociated 5HIE_D chain C from 5HIE_D
Disassociated 3OMV_A chain B from 8U1L_C
Disassociated 3OMV_B chain A from 8U1L_C
Disassociated 8CHF_A chain B from 8CPD_B
Disassociated 8CHF_B chain A from 8CPD_B
Disassociated 8CPD_A chain B from 8CPD_B
Disassociated 8CPD_B chain A from 8CPD_B
Only 18 of 24 residues are aligned
Compared 202 structures (show / hide / select) at 18 residues of 4XV9_A
#2/A:463,471,481,483,505,513-514,529-532,567,574,583,592-595
Alignment columns 41 49 59 61 83 91 92 107 108 109 110 145 152 161 170 171 172
173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
> select #2:801 :<5 & #2
238 atoms, 223 bonds, 33 residues, 1 model selected
> set bgColor white
> graphics silhouettes true
> save /Users/goddard/Desktop/image1.png supersample 3
Already setting window visible!
> diffplot residues sel
Only 24 of 33 residues are aligned
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
> diffplot residues sel verbose true
Only 24 of 33 residues are aligned
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Chain 4FK3_A #3/A has no residue in alignment columns 175
Chain 4R5Y_A #5/A has no residue in alignment columns 175
Chain 4XV1_A #7/A has no residue in alignment columns 175
Chain 4XV2_A #9/A has no residue in alignment columns 175
Chain 4XV2_B #10/B has no residue in alignment columns 175
Chain 4XV3_A #11/A has no residue in alignment columns 175
Chain 4XV3_B #12/B has no residue in alignment columns 175
Chain 3OG7_A #13/A has no residue in alignment columns 175
Chain 5ITA_B #25/B has no residue in alignment columns 175
Chain 5CSW_A #26/A has no residue in alignment columns 175
Chain 3C4C_A #29/A has no residue in alignment columns 175
Chain 3C4C_B #30/B has no residue in alignment columns 175
Chain 6CAD_A #35/A has no residue in alignment columns 175
Chain 6CAD_B #36/B has no residue in alignment columns 175
Chain 6NSQ_B #38/B has no residue in alignment columns 175
Chain 6UUO_A #39/A has no residue in alignment columns 175
Chain 6UUO_B #40/B has no residue in alignment columns 175
Chain 4RZW_A #59/A has no residue in alignment columns 175
Chain 4RZW_B #60/B has no residue in alignment columns 175
Chain 6V34_B #62/B has no residue in alignment columns 175
Chain 4CQE_A #77/A has no residue in alignment columns 175
Chain 4CQE_B #78/B has no residue in alignment columns 175
Chain 3SKC_A #114/A has no residue in alignment columns 175
Chain 5FD2_B #132/B has no residue in alignment columns 41 175
Chain 6V2U_A #134/A has no residue in alignment columns 175
Chain 7ZR0_K #154/K has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92 175
Chain 7ZR5_K #155/K has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92 175
Chain 7ZR6_K #156/K has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92 175
Chain 5CT7_B #168/B has no residue in alignment columns 175
Chain 5VAL_A #169/A has no residue in alignment columns 175
Chain 6B8U_B #174/B has no residue in alignment columns 175
Chain 6N0Q_A #175/A has no residue in alignment columns 175
Chain 4FC0_A #179/A has no residue in alignment columns 175
Chain 4KSP_A #181/A has no residue in alignment columns 175
Chain 8GFT_D #204/D has no residue in alignment columns 41 49 59 60 61 79 83
86 175
Chain 8U1L_C #209/C has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92
Chain 7Z37_CP1 #210/CP1 has no residue in alignment columns 41 49 59 60 61 79
83 86 91
Chain 7Z38_C #211/C has no residue in alignment columns 41 49 59 60 61 79 83
86 91
Chain 8GAE_D #212/D has no residue in alignment columns 41 49 59 60 61 79 83
86 175
> select #2:801 :<5 & #2 & protein
196 atoms, 186 bonds, 24 residues, 1 model selected
> diffplot residues sel verbose true
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Chain 4FK3_A #3/A has no residue in alignment columns 175
Chain 4R5Y_A #5/A has no residue in alignment columns 175
Chain 4XV1_A #7/A has no residue in alignment columns 175
Chain 4XV2_A #9/A has no residue in alignment columns 175
Chain 4XV2_B #10/B has no residue in alignment columns 175
Chain 4XV3_A #11/A has no residue in alignment columns 175
Chain 4XV3_B #12/B has no residue in alignment columns 175
Chain 3OG7_A #13/A has no residue in alignment columns 175
Chain 5ITA_B #25/B has no residue in alignment columns 175
Chain 5CSW_A #26/A has no residue in alignment columns 175
Chain 3C4C_A #29/A has no residue in alignment columns 175
Chain 3C4C_B #30/B has no residue in alignment columns 175
Chain 6CAD_A #35/A has no residue in alignment columns 175
Chain 6CAD_B #36/B has no residue in alignment columns 175
Chain 6NSQ_B #38/B has no residue in alignment columns 175
Chain 6UUO_A #39/A has no residue in alignment columns 175
Chain 6UUO_B #40/B has no residue in alignment columns 175
Chain 4RZW_A #59/A has no residue in alignment columns 175
Chain 4RZW_B #60/B has no residue in alignment columns 175
Chain 6V34_B #62/B has no residue in alignment columns 175
Chain 4CQE_A #77/A has no residue in alignment columns 175
Chain 4CQE_B #78/B has no residue in alignment columns 175
Chain 3SKC_A #114/A has no residue in alignment columns 175
Chain 5FD2_B #132/B has no residue in alignment columns 41 175
Chain 6V2U_A #134/A has no residue in alignment columns 175
Chain 7ZR0_K #154/K has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92 175
Chain 7ZR5_K #155/K has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92 175
Chain 7ZR6_K #156/K has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92 175
Chain 5CT7_B #168/B has no residue in alignment columns 175
Chain 5VAL_A #169/A has no residue in alignment columns 175
Chain 6B8U_B #174/B has no residue in alignment columns 175
Chain 6N0Q_A #175/A has no residue in alignment columns 175
Chain 4FC0_A #179/A has no residue in alignment columns 175
Chain 4KSP_A #181/A has no residue in alignment columns 175
Chain 8GFT_D #204/D has no residue in alignment columns 41 49 59 60 61 79 83
86 175
Chain 8U1L_C #209/C has no residue in alignment columns 41 49 59 60 61 79 83
86 91 92
Chain 7Z37_CP1 #210/CP1 has no residue in alignment columns 41 49 59 60 61 79
83 86 91
Chain 7Z38_C #211/C has no residue in alignment columns 41 49 59 60 61 79 83
86 91
Chain 8GAE_D #212/D has no residue in alignment columns 41 49 59 60 61 79 83
86 175
Already setting window visible!
> select subtract #2:597
188 atoms, 179 bonds, 23 residues, 1 model selected
> diffplot residues sel
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
> diffplot residues sel cluster 6
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4WO5_A 4WO5_B 4RZV_A 4RZV_B 5JRQ_A 5JRQ_B
5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 4MBJ_A 4MBJ_B 8DGS_A
3TV4_A 3TV4_B 3TV6_A 3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A
4EHG_A 4EHG_B
Cluster 2 (show / hide / select): 6U2H_C 6U2H_D 6XAG_C 6XAG_D 7MFF_A 7MFF_B
3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B 3PSB_A
3PSB_B 3PSD_A 3PSD_B 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B
4H58_A 3OMV_A 3OMV_B 8CHF_A 8CHF_B
Cluster 3 (show / hide / select): 4FK3_B 4XV1_B 4XV3_B 3OG7_B 6UAN_B 6UAN_C
6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B 3Q4C_A 3Q4C_B 4E26_A 4E26_B 4MNE_B
4MNE_C 4MNE_F 4MNE_G 4H58_B 8CPD_A 8CPD_B
Cluster 4 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 5 (show / hide / select): 4XV9_A 4R5Y_A 4R5Y_B 6XFP_A 6XLO_A 6XLO_B
7K0V_A 7K0V_B 7K0V_C 7K0V_D 5CSX_A 3C4C_B 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6CAD_A
6CAD_B 6NSQ_A 6NSQ_B 8C7X_A 8C7X_B 8F7O_A 8F7O_B 8F7P_A 8F7P_B 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 5HI2_A 5HID_A 5HID_B 8C7Y_A 8C7Y_B 4RZW_A 4RZW_B 6V34_A
6V34_B 4G9C_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A 4G9R_B 5C9C_A 5C9C_B
5CT7_A 5CT7_B 5VAL_A 5VAL_B 5VAM_A 5VAM_B 6B8U_A 6B8U_B 6N0Q_A 6N0Q_B 4DBN_A
4DBN_B 4FC0_A 4FC0_B 4KSP_A 4KSP_B 4KSQ_A 4KSQ_B 3Q96_A 3Q96_B 4H58_C 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 6 (show / hide / select): 4FK3_A 4XV1_A 4XV2_A 4XV2_B 4XV3_A 3OG7_A
5ITA_A 5ITA_B 5CSW_A 5CSW_B 3C4C_A 6UUO_A 6UUO_B 4CQE_A 4CQE_B 7P3V_A 7P3V_B
3SKC_A 3SKC_B 6V2U_A 6V2U_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
> diffplot residues sel cluster 4
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4XV9_A 4R5Y_A 4R5Y_B 6XFP_A 6XLO_A 6XLO_B
7K0V_A 7K0V_B 7K0V_C 7K0V_D 5CSX_A 3C4C_B 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6CAD_A
6CAD_B 6NSQ_A 6NSQ_B 8C7X_A 8C7X_B 8F7O_A 8F7O_B 8F7P_A 8F7P_B 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 5HI2_A 5HID_A 5HID_B 8C7Y_A 8C7Y_B 4RZW_A 4RZW_B 6V34_A
6V34_B 4G9C_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A 4G9R_B 5C9C_A 5C9C_B
5CT7_A 5CT7_B 5VAL_A 5VAL_B 5VAM_A 5VAM_B 6B8U_A 6B8U_B 6N0Q_A 6N0Q_B 4DBN_A
4DBN_B 4FC0_A 4FC0_B 4KSP_A 4KSP_B 4KSQ_A 4KSQ_B 3Q96_A 3Q96_B 4H58_C 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 2 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 3 (show / hide / select): 4FK3_A 4XV1_A 4XV2_A 4XV2_B 4XV3_A 3OG7_A
4WO5_A 4WO5_B 5ITA_A 5ITA_B 5CSW_A 5CSW_B 3C4C_A 6UUO_A 6UUO_B 4RZV_A 4RZV_B
5JRQ_A 5JRQ_B 5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 4CQE_A
4CQE_B 7P3V_A 7P3V_B 4MBJ_A 4MBJ_B 8DGS_A 3SKC_A 3SKC_B 3TV4_A 3TV4_B 3TV6_A
3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 6V2U_A 6V2U_B 4EHG_A
4EHG_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
Cluster 4 (show / hide / select): 4FK3_B 4XV1_B 4XV3_B 3OG7_B 6U2H_C 6U2H_D
6XAG_C 6XAG_D 7MFF_A 7MFF_B 6UAN_B 6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A
6Q0T_B 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B
3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 4E26_A 4E26_B 4MNE_B 4MNE_C 4MNE_F
4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B
3OMV_A 3OMV_B 8CHF_A 8CHF_B 8CPD_A 8CPD_B
> show #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #15 #16 #17 #18 #19 #20 #21
> #22 #23 #24 #25 #26 #27 #28 #29 #30 #31 #32 #33 #34 #35 #36 #37 #38 #39 #40
> #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 #56 #57 #58 #59
> #60 #61 #62 #63 #64 #65 #66 #67 #68 #69 #70 #71 #72 #73 #74 #75 #76 #77 #78
> #79 #80 #81 #82 #83 #84 #85 #86 #87 #88 #89 #90 #91 #92 #93 #94 #95 #96 #97
> #98 #99 #100 #101 #102 #103 #104 #105 #106 #107 #108 #109 #110 #111 #112
> #113 #114 #115 #116 #117 #118 #119 #120 #121 #122 #123 #124 #125 #126 #127
> #128 #129 #130 #131 #133 #134 #135 #136 #137 #138 #139 #140 #141 #142 #143
> #144 #145 #146 #147 #148 #149 #150 #151 #152 #153 #157 #158 #159 #160 #161
> #162 #163 #164 #165 #166 #167 #168 #169 #170 #171 #172 #173 #174 #175 #176
> #177 #178 #179 #180 #181 #182 #183 #184 #185 #186 #187 #188 #189 #190 #191
> #192 #193 #194 #195 #196 #197 #198 #199 #200 #201 #202 #203 #205 #206 #207
> #208 models
> hide #3-212 atoms
> show ribbons
> lighting soft
> diffplot hideextrachains #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #15 #16
> #17 #18 #19 #20 #21 #22 #23 #24 #25 #26 #27 #28 #29 #30 #31 #32 #33 #34 #35
> #36 #37 #38 #39 #40 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54
> #55 #56 #57 #58 #59 #60 #61 #62 #63 #64 #65 #66 #67 #68 #69 #70 #71 #72 #73
> #74 #75 #76 #77 #78 #79 #80 #81 #82 #83 #84 #85 #86 #87 #88 #89 #90 #91 #92
> #93 #94 #95 #96 #97 #98 #99 #100 #101 #102 #103 #104 #105 #106 #107 #108
> #109 #110 #111 #112 #113 #114 #115 #116 #117 #118 #119 #120 #121 #122 #123
> #124 #125 #126 #127 #128 #129 #130 #131 #133 #134 #135 #136 #137 #138 #139
> #140 #141 #142 #143 #144 #145 #146 #147 #148 #149 #150 #151 #152 #153 #157
> #158 #159 #160 #161 #162 #163 #164 #165 #166 #167 #168 #169 #170 #171 #172
> #173 #174 #175 #176 #177 #178 #179 #180 #181 #182 #183 #184 #185 #186 #187
> #188 #189 #190 #191 #192 #193 #194 #195 #196 #197 #198 #199 #200 #201 #202
> #203 #205 #206 #207 #208
> cartoon style #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #15 #16 #17 #18
> #19 #20 #21 #22 #23 #24 #25 #26 #27 #28 #29 #30 #31 #32 #33 #34 #35 #36 #37
> #38 #39 #40 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 #56
> #57 #58 #59 #60 #61 #62 #63 #64 #65 #66 #67 #68 #69 #70 #71 #72 #73 #74 #75
> #76 #77 #78 #79 #80 #81 #82 #83 #84 #85 #86 #87 #88 #89 #90 #91 #92 #93 #94
> #95 #96 #97 #98 #99 #100 #101 #102 #103 #104 #105 #106 #107 #108 #109 #110
> #111 #112 #113 #114 #115 #116 #117 #118 #119 #120 #121 #122 #123 #124 #125
> #126 #127 #128 #129 #130 #131 #133 #134 #135 #136 #137 #138 #139 #140 #141
> #142 #143 #144 #145 #146 #147 #148 #149 #150 #151 #152 #153 #157 #158 #159
> #160 #161 #162 #163 #164 #165 #166 #167 #168 #169 #170 #171 #172 #173 #174
> #175 #176 #177 #178 #179 #180 #181 #182 #183 #184 #185 #186 #187 #188 #189
> #190 #191 #192 #193 #194 #195 #196 #197 #198 #199 #200 #201 #202 #203 #205
> #206 #207 #208 width 0.3 thickness 0.1
> lighting simple
> lighting soft
> lighting full
> lighting soft
> save /Users/goddard/Desktop/image2.png supersample 3
> diffplot residues sel cluster 4
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4FK3_B 4XV1_B 4XV3_B 3OG7_B 6U2H_C 6U2H_D
6XAG_C 6XAG_D 7MFF_A 7MFF_B 6UAN_B 6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A
6Q0T_B 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B
3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 4E26_A 4E26_B 4MNE_B 4MNE_C 4MNE_F
4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B
3OMV_A 3OMV_B 8CHF_A 8CHF_B 8CPD_A 8CPD_B
Cluster 2 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 3 (show / hide / select): 4FK3_A 4XV1_A 4XV2_A 4XV2_B 4XV3_A 3OG7_A
4WO5_A 4WO5_B 5ITA_A 5ITA_B 5CSW_A 5CSW_B 3C4C_A 6UUO_A 6UUO_B 4RZV_A 4RZV_B
5JRQ_A 5JRQ_B 5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 4CQE_A
4CQE_B 7P3V_A 7P3V_B 4MBJ_A 4MBJ_B 8DGS_A 3SKC_A 3SKC_B 3TV4_A 3TV4_B 3TV6_A
3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 6V2U_A 6V2U_B 4EHG_A
4EHG_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
Cluster 4 (show / hide / select): 4XV9_A 4R5Y_A 4R5Y_B 6XFP_A 6XLO_A 6XLO_B
7K0V_A 7K0V_B 7K0V_C 7K0V_D 5CSX_A 3C4C_B 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6CAD_A
6CAD_B 6NSQ_A 6NSQ_B 8C7X_A 8C7X_B 8F7O_A 8F7O_B 8F7P_A 8F7P_B 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 5HI2_A 5HID_A 5HID_B 8C7Y_A 8C7Y_B 4RZW_A 4RZW_B 6V34_A
6V34_B 4G9C_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A 4G9R_B 5C9C_A 5C9C_B
5CT7_A 5CT7_B 5VAL_A 5VAL_B 5VAM_A 5VAM_B 6B8U_A 6B8U_B 6N0Q_A 6N0Q_B 4DBN_A
4DBN_B 4FC0_A 4FC0_B 4KSP_A 4KSP_B 4KSQ_A 4KSQ_B 3Q96_A 3Q96_B 4H58_C 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
> diffplot residues sel cluster 4
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4FK3_B 4XV1_B 4XV3_B 3OG7_B 6U2H_C 6U2H_D
6XAG_C 6XAG_D 7MFF_A 7MFF_B 6UAN_B 6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A
6Q0T_B 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B
3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 4E26_A 4E26_B 4MNE_B 4MNE_C 4MNE_F
4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B
3OMV_A 3OMV_B 8CHF_A 8CHF_B 8CPD_A 8CPD_B
Cluster 2 (show / hide / select): 4FK3_A 4XV1_A 4XV2_A 4XV2_B 4XV3_A 3OG7_A
4WO5_A 4WO5_B 5ITA_A 5ITA_B 5CSW_A 5CSW_B 3C4C_A 6UUO_A 6UUO_B 4RZV_A 4RZV_B
5JRQ_A 5JRQ_B 5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 4CQE_A
4CQE_B 7P3V_A 7P3V_B 4MBJ_A 4MBJ_B 8DGS_A 3SKC_A 3SKC_B 3TV4_A 3TV4_B 3TV6_A
3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 6V2U_A 6V2U_B 4EHG_A
4EHG_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
Cluster 3 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 4 (show / hide / select): 4XV9_A 4R5Y_A 4R5Y_B 6XFP_A 6XLO_A 6XLO_B
7K0V_A 7K0V_B 7K0V_C 7K0V_D 5CSX_A 3C4C_B 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6CAD_A
6CAD_B 6NSQ_A 6NSQ_B 8C7X_A 8C7X_B 8F7O_A 8F7O_B 8F7P_A 8F7P_B 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 5HI2_A 5HID_A 5HID_B 8C7Y_A 8C7Y_B 4RZW_A 4RZW_B 6V34_A
6V34_B 4G9C_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A 4G9R_B 5C9C_A 5C9C_B
5CT7_A 5CT7_B 5VAL_A 5VAL_B 5VAM_A 5VAM_B 6B8U_A 6B8U_B 6N0Q_A 6N0Q_B 4DBN_A
4DBN_B 4FC0_A 4FC0_B 4KSP_A 4KSP_B 4KSQ_A 4KSQ_B 3Q96_A 3Q96_B 4H58_C 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Already setting window visible!
> diffplot residues sel cluster 4
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 2 (show / hide / select): 4FK3_B 4XV1_B 4XV3_B 3OG7_B 6U2H_C 6U2H_D
6XAG_C 6XAG_D 7MFF_A 7MFF_B 6UAN_B 6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A
6Q0T_B 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B
3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 4E26_A 4E26_B 4MNE_B 4MNE_C 4MNE_F
4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B
3OMV_A 3OMV_B 8CHF_A 8CHF_B 8CPD_A 8CPD_B
Cluster 3 (show / hide / select): 4FK3_A 4XV1_A 4XV2_A 4XV2_B 4XV3_A 3OG7_A
4WO5_A 4WO5_B 5ITA_A 5ITA_B 5CSW_A 5CSW_B 3C4C_A 6UUO_A 6UUO_B 4RZV_A 4RZV_B
5JRQ_A 5JRQ_B 5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 4CQE_A
4CQE_B 7P3V_A 7P3V_B 4MBJ_A 4MBJ_B 8DGS_A 3SKC_A 3SKC_B 3TV4_A 3TV4_B 3TV6_A
3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 6V2U_A 6V2U_B 4EHG_A
4EHG_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
Cluster 4 (show / hide / select): 4XV9_A 4R5Y_A 4R5Y_B 6XFP_A 6XLO_A 6XLO_B
7K0V_A 7K0V_B 7K0V_C 7K0V_D 5CSX_A 3C4C_B 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6CAD_A
6CAD_B 6NSQ_A 6NSQ_B 8C7X_A 8C7X_B 8F7O_A 8F7O_B 8F7P_A 8F7P_B 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 5HI2_A 5HID_A 5HID_B 8C7Y_A 8C7Y_B 4RZW_A 4RZW_B 6V34_A
6V34_B 4G9C_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A 4G9R_B 5C9C_A 5C9C_B
5CT7_A 5CT7_B 5VAL_A 5VAL_B 5VAM_A 5VAM_B 6B8U_A 6B8U_B 6N0Q_A 6N0Q_B 4DBN_A
4DBN_B 4FC0_A 4FC0_B 4KSP_A 4KSP_B 4KSQ_A 4KSQ_B 3Q96_A 3Q96_B 4H58_C 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
> select add #2:597
196 atoms, 186 bonds, 24 residues, 1 model selected
> diffplot residues sel cluster 4
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 2 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
Cluster 3 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 4 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 4WO5_A 4WO5_B 5ITA_A
5CSW_B 4RZV_A 4RZV_B 6U2H_C 6U2H_D 6XAG_C 6XAG_D 5JRQ_A 5JRQ_B 5JSM_A 5JSM_B
5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 7P3V_A 7P3V_B 7MFF_A 7MFF_B 6UAN_B
6UAN_C 4MBJ_A 4MBJ_B 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B 8DGS_A 3D4Q_A
3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B 3PSB_A 3PSB_B
3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 3SKC_B 3TV4_A 3TV4_B 3TV6_A 3TV6_B 4E26_A 4E26_B
4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 6V2U_B 4MNE_B 4MNE_C 4MNE_F
4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 4EHG_A 4EHG_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B
4H58_A 4H58_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D 3OMV_A 3OMV_B 8CHF_A 8CHF_B 8CPD_A
8CPD_B
> select subtract #2:597
188 atoms, 179 bonds, 23 residues, 1 model selected
> diffplot residues sel cluster 4
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4FK3_B 4XV1_B 4XV3_B 3OG7_B 6U2H_C 6U2H_D
6XAG_C 6XAG_D 7MFF_A 7MFF_B 6UAN_B 6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A
6Q0T_B 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B
3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 4E26_A 4E26_B 4MNE_B 4MNE_C 4MNE_F
4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B
3OMV_A 3OMV_B 8CHF_A 8CHF_B 8CPD_A 8CPD_B
Cluster 2 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 3 (show / hide / select): 4FK3_A 4XV1_A 4XV2_A 4XV2_B 4XV3_A 3OG7_A
4WO5_A 4WO5_B 5ITA_A 5ITA_B 5CSW_A 5CSW_B 3C4C_A 6UUO_A 6UUO_B 4RZV_A 4RZV_B
5JRQ_A 5JRQ_B 5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 4CQE_A
4CQE_B 7P3V_A 7P3V_B 4MBJ_A 4MBJ_B 8DGS_A 3SKC_A 3SKC_B 3TV4_A 3TV4_B 3TV6_A
3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 6V2U_A 6V2U_B 4EHG_A
4EHG_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
Cluster 4 (show / hide / select): 4XV9_A 4R5Y_A 4R5Y_B 6XFP_A 6XLO_A 6XLO_B
7K0V_A 7K0V_B 7K0V_C 7K0V_D 5CSX_A 3C4C_B 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6CAD_A
6CAD_B 6NSQ_A 6NSQ_B 8C7X_A 8C7X_B 8F7O_A 8F7O_B 8F7P_A 8F7P_B 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 5HI2_A 5HID_A 5HID_B 8C7Y_A 8C7Y_B 4RZW_A 4RZW_B 6V34_A
6V34_B 4G9C_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A 4G9R_B 5C9C_A 5C9C_B
5CT7_A 5CT7_B 5VAL_A 5VAL_B 5VAM_A 5VAM_B 6B8U_A 6B8U_B 6N0Q_A 6N0Q_B 4DBN_A
4DBN_B 4FC0_A 4FC0_B 4KSP_A 4KSP_B 4KSQ_A 4KSQ_B 3Q96_A 3Q96_B 4H58_C 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
> save /Users/goddard/Desktop/image1.png supersample 3
> hide #4 #8 #12 #14 #63 #64 #65 #66 #83 #84 #85 #86 #89 #90 #91 #92 #93 #94
> #98 #99 #100 #101 #102 #103 #104 #105 #106 #107 #108 #109 #110 #111 #112
> #113 #120 #121 #144 #145 #146 #147 #150 #151 #152 #153 #165 #166 #187 #188
> #189 #190 #202 #203 #205 #206 #207 #208 models
> hide #2 #5 #6 #15 #16 #17 #18 #19 #20 #21 #28 #30 #31 #32 #33 #34 #35 #36
> #37 #38 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 #56 #59
> #60 #61 #62 #126 #127 #148 #149 #157 #158 #161 #162 #163 #164 #167 #168 #169
> #170 #171 #172 #173 #174 #175 #176 #177 #178 #179 #180 #181 #182 #183 #184
> #185 #186 #191 #192 #193 #194 #195 #196 #197 models
> lighting soft
> lighting full
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> save /Users/goddard/Desktop/image1.png supersample 3
> hide #!81 models
> show #!81 models
> hide #81.2 models
> show #81.2 models
> show diffatoms
> select diffatoms
4646 atoms, 4646 residues, 202 models selected
> style sel &
> #!3,7,9-11,13,22-27,29,39-40,57-58,67-82,87-88,95-97,114-119,122-125,128-131,133-143,159-160,198-201
> ball
Changed 1587 atom styles
> select clear
> select diffatoms
4646 atoms, 4646 residues, 202 models selected
> style sel &
> #!3,7,9-11,13,22-27,29,39-40,57-58,67-82,87-88,95-97,114-119,122-125,128-131,133-143,159-160,198-201
> sphere
Changed 1587 atom styles
> select clear
> select diffatoms
4646 atoms, 4646 residues, 202 models selected
> style sel &
> #!3,7,9-11,13,22-27,29,39-40,57-58,67-82,87-88,95-97,114-119,122-125,128-131,133-143,159-160,198-201
> ball
Changed 1587 atom styles
> select clear
[Repeated 1 time(s)]
> select diffatoms
4646 atoms, 4646 residues, 202 models selected
> select clear
> transparency 80 ribbons
> set bgColor black
> transparency 50 ribbons
> graphics silhouettes false
> transparency 20 ribbons
> transparency 40 ribbons
> transparency 50 ribbons
> graphics silhouettes true
> transparency 0 ribbons
> save /Users/goddard/Desktop/image1.png supersample 3
> transparency 50 ribbons
> transparency 90 ribbons
> transparency 50 ribbons
> set bgColor white
> lighting simple
> set bgColor black
> lighting full
> lighting soft
> lighting simple
> lighting full
> lighting simple
> lighting full
> save /Users/goddard/Desktop/image2.png supersample 3
> select diffatoms
4646 atoms, 4646 residues, 202 models selected
> select sel & #2
23 atoms, 23 residues, 1 model selected
> diffplot residues sel
Compared 202 structures (show / hide / select) at 23 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173
Excluded 9 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 5FD2_B 7ZR0_K 7ZR5_K
7ZR6_K 8GFT_D 8U1L_C 7Z37_CP1 7Z38_C 8GAE_D
> show #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #15 #16 #17 #18 #19 #20 #21
> #22 #23 #24 #25 #26 #27 #28 #29 #30 #31 #32 #33 #34 #35 #36 #37 #38 #39 #40
> #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 #56 #57 #58 #59
> #60 #61 #62 #63 #64 #65 #66 #67 #68 #69 #70 #71 #72 #73 #74 #75 #76 #77 #78
> #79 #80 #81 #82 #83 #84 #85 #86 #87 #88 #89 #90 #91 #92 #93 #94 #95 #96 #97
> #98 #99 #100 #101 #102 #103 #104 #105 #106 #107 #108 #109 #110 #111 #112
> #113 #114 #115 #116 #117 #118 #119 #120 #121 #122 #123 #124 #125 #126 #127
> #128 #129 #130 #131 #133 #134 #135 #136 #137 #138 #139 #140 #141 #142 #143
> #144 #145 #146 #147 #148 #149 #150 #151 #152 #153 #157 #158 #159 #160 #161
> #162 #163 #164 #165 #166 #167 #168 #169 #170 #171 #172 #173 #174 #175 #176
> #177 #178 #179 #180 #181 #182 #183 #184 #185 #186 #187 #188 #189 #190 #191
> #192 #193 #194 #195 #196 #197 #198 #199 #200 #201 #202 #203 #205 #206 #207
> #208 models
> hide atoms
> color bypolymer
> select clear
> lighting soft
> transparency 0 ribbons
> hide #1,3-212 models
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> cartoon style width default thick default
Invalid "width" argument: Expected a number
> cartoon style width 3 thickness default
Invalid "thickness" argument: Expected a number
> help cartoon style
> cartoon style width 2 thickness 0.4
> select #2:801 :<5 & #2 & protein
196 atoms, 186 bonds, 24 residues, 1 model selected
> lighting full
> lighting soft
> lighting full
> lighting simple
> diffplot residues sel cluster 6
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
Cluster 2 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 3 (show / hide / select): 6U2H_C 6U2H_D 7MFF_A 7MFF_B 3D4Q_A 3D4Q_B
3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B 3PSB_A 3PSB_B 3PSD_A
3PSD_B 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 3OMV_A
3OMV_B 8CHF_A 8CHF_B
Cluster 4 (show / hide / select): 4WO5_A 4WO5_B 5ITA_A 4RZV_A 4RZV_B 5JRQ_A
5JRQ_B 5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 4MBJ_A 4MBJ_B
8DGS_A 3SKC_B 3TV4_A 3TV4_B 3TV6_A 3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A
4PP7_B 5FD2_A 4EHG_A 4EHG_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
Cluster 5 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 6 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 5CSW_B 6XAG_C 6XAG_D
7P3V_A 7P3V_B 6UAN_B 6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B 3Q4C_A
3Q4C_B 4E26_A 4E26_B 6V2U_B 4MNE_B 4MNE_C 4MNE_F 4MNE_G 4H58_B 8CPD_A 8CPD_B
> diffplot residues sel cluster 9
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 2 (show / hide / select): 4WO5_A 4WO5_B 4RZV_A 4RZV_B 5JSM_B 5JSM_D
5JT2_A 5JT2_C
Cluster 3 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 6XAG_C 6XAG_D 6UAN_B
6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B 3Q4C_A 3Q4C_B 4E26_A 4E26_B
4MNE_B 4MNE_C 4MNE_F 4MNE_G 4H58_B 8CPD_A 8CPD_B
Cluster 4 (show / hide / select): 5CSW_B 7P3V_A 7P3V_B 6V2U_B 5HIE_A 5HIE_B
5HIE_C 5HIE_D
Cluster 5 (show / hide / select): 5JRQ_A 5JRQ_B 5JSM_A 5JSM_C 5JT2_B 5JT2_D
Cluster 6 (show / hide / select): 6U2H_C 6U2H_D 7MFF_A 7MFF_B 3D4Q_A 3D4Q_B
3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B 3PSB_A 3PSB_B 3PSD_A
3PSD_B 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 3OMV_A
3OMV_B 8CHF_A 8CHF_B
Cluster 7 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 8 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
Cluster 9 (show / hide / select): 5ITA_A 4MBJ_A 4MBJ_B 8DGS_A 3SKC_B 3TV4_A
3TV4_B 3TV6_A 3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 4EHG_A
4EHG_B
> show #2 #4 #6 #8 #14 #15 #16 #17 #18 #19 #20 #21 #22 #23 #24 #27 #28 #31 #32
> #33 #34 #37 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55 #56
> #57 #58 #61 #63 #64 #65 #66 #67 #68 #69 #70 #71 #72 #73 #74 #75 #76 #79 #80
> #81 #82 #83 #84 #85 #86 #87 #88 #89 #90 #91 #92 #93 #94 #95 #96 #97 #98 #99
> #100 #101 #102 #103 #104 #105 #106 #107 #108 #109 #110 #111 #112 #113 #115
> #116 #117 #118 #119 #120 #121 #122 #123 #124 #125 #126 #127 #128 #129 #130
> #131 #133 #135 #136 #137 #138 #139 #140 #141 #142 #143 #144 #145 #146 #147
> #148 #149 #150 #151 #152 #153 #157 #158 #159 #160 #161 #162 #163 #164 #165
> #166 #167 #170 #171 #172 #173 #176 #177 #178 #180 #182 #183 #184 #185 #186
> #187 #188 #189 #190 #191 #192 #193 #194 #195 #196 #197 #198 #199 #200 #201
> #202 #203 #205 #206 #207 #208 models
> diffplot hideextrachains #2 #4 #6 #8 #14 #15 #16 #17 #18 #19 #20 #21 #22 #23
> #24 #27 #28 #31 #32 #33 #34 #37 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51
> #52 #53 #54 #55 #56 #57 #58 #61 #63 #64 #65 #66 #67 #68 #69 #70 #71 #72 #73
> #74 #75 #76 #79 #80 #81 #82 #83 #84 #85 #86 #87 #88 #89 #90 #91 #92 #93 #94
> #95 #96 #97 #98 #99 #100 #101 #102 #103 #104 #105 #106 #107 #108 #109 #110
> #111 #112 #113 #115 #116 #117 #118 #119 #120 #121 #122 #123 #124 #125 #126
> #127 #128 #129 #130 #131 #133 #135 #136 #137 #138 #139 #140 #141 #142 #143
> #144 #145 #146 #147 #148 #149 #150 #151 #152 #153 #157 #158 #159 #160 #161
> #162 #163 #164 #165 #166 #167 #170 #171 #172 #173 #176 #177 #178 #180 #182
> #183 #184 #185 #186 #187 #188 #189 #190 #191 #192 #193 #194 #195 #196 #197
> #198 #199 #200 #201 #202 #203 #205 #206 #207 #208
> cartoon style #2 #4 #6 #8 #14 #15 #16 #17 #18 #19 #20 #21 #22 #23 #24 #27
> #28 #31 #32 #33 #34 #37 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53
> #54 #55 #56 #57 #58 #61 #63 #64 #65 #66 #67 #68 #69 #70 #71 #72 #73 #74 #75
> #76 #79 #80 #81 #82 #83 #84 #85 #86 #87 #88 #89 #90 #91 #92 #93 #94 #95 #96
> #97 #98 #99 #100 #101 #102 #103 #104 #105 #106 #107 #108 #109 #110 #111 #112
> #113 #115 #116 #117 #118 #119 #120 #121 #122 #123 #124 #125 #126 #127 #128
> #129 #130 #131 #133 #135 #136 #137 #138 #139 #140 #141 #142 #143 #144 #145
> #146 #147 #148 #149 #150 #151 #152 #153 #157 #158 #159 #160 #161 #162 #163
> #164 #165 #166 #167 #170 #171 #172 #173 #176 #177 #178 #180 #182 #183 #184
> #185 #186 #187 #188 #189 #190 #191 #192 #193 #194 #195 #196 #197 #198 #199
> #200 #201 #202 #203 #205 #206 #207 #208 width 0.3 thickness 0.1
> hide atomts
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide atoms
> lighting soft
> lighting simple
> diffplot residues sel cluster 7
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 2 (show / hide / select): 5ITA_A 4MBJ_A 4MBJ_B 8DGS_A 3SKC_B 3TV4_A
3TV4_B 3TV6_A 3TV6_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 4EHG_A
4EHG_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D
Cluster 3 (show / hide / select): 4WO5_A 4WO5_B 4RZV_A 4RZV_B 5JRQ_A 5JRQ_B
5JSM_A 5JSM_B 5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D
Cluster 4 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
Cluster 5 (show / hide / select): 6U2H_C 6U2H_D 7MFF_A 7MFF_B 3D4Q_A 3D4Q_B
3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B 3PSB_A 3PSB_B 3PSD_A
3PSD_B 7SHV_A 7SHV_B 4MNF_A 4MNF_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B 4H58_A 3OMV_A
3OMV_B 8CHF_A 8CHF_B
Cluster 6 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 5CSW_B 6XAG_C 6XAG_D
7P3V_A 7P3V_B 6UAN_B 6UAN_C 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B 3Q4C_A
3Q4C_B 4E26_A 4E26_B 6V2U_B 4MNE_B 4MNE_C 4MNE_F 4MNE_G 4H58_B 8CPD_A 8CPD_B
Cluster 7 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
> diffplot residues sel cluster 2
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4XV9_A 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_A
7K0V_B 7K0V_C 7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8C7X_B
8F7O_A 8F7O_B 8F7P_A 8F7P_B 6P3D_A 6P7G_A 6P7G_B 6P7G_C 6P7G_D 5HI2_A 5HID_A
5HID_B 8C7Y_A 8C7Y_B 6V34_A 4G9C_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAL_B 5VAM_A 5VAM_B 6B8U_A 6N0Q_B 4DBN_A 4DBN_B
4FC0_B 4KSP_B 4KSQ_A 4KSQ_B 3Q96_A 3Q96_B 4H58_C 6N0P_A 6N0P_B 1UWH_A 1UWH_B
1UWJ_A 1UWJ_B
Cluster 2 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 4WO5_A 4WO5_B 5ITA_A
5CSW_B 4RZV_A 4RZV_B 6U2H_C 6U2H_D 6XAG_C 6XAG_D 5JRQ_A 5JRQ_B 5JSM_A 5JSM_B
5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 7P3V_A 7P3V_B 7MFD_A 7MFE_A 7MFF_A
7MFF_B 6UAN_B 6UAN_C 4MBJ_A 4MBJ_B 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B
6NYB_A 8DGS_A 8DGT_A 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B
3PRI_A 3PRI_B 3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 3SKC_B 3TV4_A 3TV4_B
3TV6_A 3TV6_B 4E26_A 4E26_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 6U2G_B
5FD2_A 6PP9_A 6V2U_B 6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
4MNE_B 4MNE_C 4MNE_F 4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 4EHG_A 4EHG_B 2FB8_A
2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D 3OMV_A 3OMV_B
8CHF_A 8CHF_B 8CPD_A 8CPD_B
> diffplot residues sel cluster 3
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 4WO5_A 4WO5_B 5ITA_A
5CSW_B 4RZV_A 4RZV_B 6U2H_C 6U2H_D 6XAG_C 6XAG_D 5JRQ_A 5JRQ_B 5JSM_A 5JSM_B
5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 7P3V_A 7P3V_B 7MFD_A 7MFE_A 7MFF_A
7MFF_B 6UAN_B 6UAN_C 4MBJ_A 4MBJ_B 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B
6NYB_A 8DGS_A 8DGT_A 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B
3PRI_A 3PRI_B 3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 3SKC_B 3TV4_A 3TV4_B
3TV6_A 3TV6_B 4E26_A 4E26_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 6U2G_B
5FD2_A 6PP9_A 6V2U_B 6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
4MNE_B 4MNE_C 4MNE_F 4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 4EHG_A 4EHG_B 2FB8_A
2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D 3OMV_A 3OMV_B
8CHF_A 8CHF_B 8CPD_A 8CPD_B
Cluster 2 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 3 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
> diffplot residues sel cluster 3
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
Cluster 2 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 3 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 4WO5_A 4WO5_B 5ITA_A
5CSW_B 4RZV_A 4RZV_B 6U2H_C 6U2H_D 6XAG_C 6XAG_D 5JRQ_A 5JRQ_B 5JSM_A 5JSM_B
5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 7P3V_A 7P3V_B 7MFD_A 7MFE_A 7MFF_A
7MFF_B 6UAN_B 6UAN_C 4MBJ_A 4MBJ_B 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B
6NYB_A 8DGS_A 8DGT_A 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B
3PRI_A 3PRI_B 3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 3SKC_B 3TV4_A 3TV4_B
3TV6_A 3TV6_B 4E26_A 4E26_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 6U2G_B
5FD2_A 6PP9_A 6V2U_B 6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
4MNE_B 4MNE_C 4MNE_F 4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 4EHG_A 4EHG_B 2FB8_A
2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D 3OMV_A 3OMV_B
8CHF_A 8CHF_B 8CPD_A 8CPD_B
> diffplot residues sel cluster 3
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 4WO5_A 4WO5_B 5ITA_A
5CSW_B 4RZV_A 4RZV_B 6U2H_C 6U2H_D 6XAG_C 6XAG_D 5JRQ_A 5JRQ_B 5JSM_A 5JSM_B
5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 7P3V_A 7P3V_B 7MFD_A 7MFE_A 7MFF_A
7MFF_B 6UAN_B 6UAN_C 4MBJ_A 4MBJ_B 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B
6NYB_A 8DGS_A 8DGT_A 3D4Q_A 3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B
3PRI_A 3PRI_B 3PSB_A 3PSB_B 3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 3SKC_B 3TV4_A 3TV4_B
3TV6_A 3TV6_B 4E26_A 4E26_B 4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 6U2G_B
5FD2_A 6PP9_A 6V2U_B 6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
4MNE_B 4MNE_C 4MNE_F 4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 4EHG_A 4EHG_B 2FB8_A
2FB8_B 4YHT_A 4YHT_B 4H58_A 4H58_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D 3OMV_A 3OMV_B
8CHF_A 8CHF_B 8CPD_A 8CPD_B
Cluster 2 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 3 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
> diffplot residues sel cluster 4
Compared 172 structures (show / hide / select) at 24 residues of 4XV9_A
#2/A:463,471,481-483,501,505,508,513-514,527,529-532,567,572,574,583,592-595,597
Alignment columns 41 49 59 60 61 79 83 86 91 92 105 107 108 109 110 145 150
152 161 170 171 172 173 175
Excluded 39 structures (show / hide / select) because they did not have
alignment matches for all the residues being compared: 4FK3_A 4R5Y_A 4XV1_A
4XV2_A 4XV2_B 4XV3_A 4XV3_B 3OG7_A 5ITA_B 5CSW_A 3C4C_A 3C4C_B 6CAD_A 6CAD_B
6NSQ_B 6UUO_A 6UUO_B 4RZW_A 4RZW_B 6V34_B 4CQE_A 4CQE_B 3SKC_A 5FD2_B 6V2U_A
7ZR0_K 7ZR5_K 7ZR6_K 5CT7_B 5VAL_A 6B8U_B 6N0Q_A 4FC0_A 4KSP_A 8GFT_D 8U1L_C
7Z37_CP1 7Z38_C 8GAE_D
Cluster 1 (show / hide / select): 4R5Y_B 6XFP_A 6XLO_A 6XLO_B 7K0V_B 7K0V_C
7K0V_D 5CSX_A 4JVG_A 4JVG_B 4JVG_C 4JVG_D 6NSQ_A 8C7X_A 8F7O_B 8F7P_A 8F7P_B
5HI2_A 5HID_A 5HID_B 8C7Y_A 6V34_A 4G9C_B 3II5_A 3II5_B 3IDP_A 3IDP_B 4G9R_A
4G9R_B 5C9C_A 5C9C_B 5CT7_A 5VAM_A 5VAM_B 6B8U_A 4DBN_A 4KSQ_A 3Q96_A 6N0P_A
6N0P_B 1UWH_A 1UWH_B 1UWJ_A 1UWJ_B
Cluster 2 (show / hide / select): 7MFD_A 7MFE_A 6NYB_A 8DGT_A 6U2G_B 6PP9_A
6V2W_A 7M0T_A 7M0U_A 7M0V_A 7M0W_A 7M0X_A 7M0Y_A 7M0Z_A
Cluster 3 (show / hide / select): 4FK3_B 4XV1_B 3OG7_B 4WO5_A 4WO5_B 5ITA_A
5CSW_B 4RZV_A 4RZV_B 6U2H_C 6U2H_D 6XAG_C 6XAG_D 5JRQ_A 5JRQ_B 5JSM_A 5JSM_B
5JSM_C 5JSM_D 5JT2_A 5JT2_B 5JT2_C 5JT2_D 7P3V_A 7P3V_B 7MFF_A 7MFF_B 6UAN_B
6UAN_C 4MBJ_A 4MBJ_B 6Q0K_A 6Q0K_B 6Q0J_A 6Q0J_B 6Q0T_A 6Q0T_B 8DGS_A 3D4Q_A
3D4Q_B 3PPJ_A 3PPJ_B 3PPK_A 3PPK_B 3PRF_A 3PRF_B 3PRI_A 3PRI_B 3PSB_A 3PSB_B
3PSD_A 3PSD_B 3Q4C_A 3Q4C_B 3SKC_B 3TV4_A 3TV4_B 3TV6_A 3TV6_B 4E26_A 4E26_B
4E4X_A 4E4X_B 4EHE_A 4EHE_B 4PP7_A 4PP7_B 5FD2_A 6V2U_B 4MNE_B 4MNE_C 4MNE_F
4MNE_G 7SHV_A 7SHV_B 4MNF_A 4MNF_B 4EHG_A 4EHG_B 2FB8_A 2FB8_B 4YHT_A 4YHT_B
4H58_A 4H58_B 5HIE_A 5HIE_B 5HIE_C 5HIE_D 3OMV_A 3OMV_B 8CHF_A 8CHF_B 8CPD_A
8CPD_B
Cluster 4 (show / hide / select): 4XV9_A 7K0V_A 8C7X_B 8F7O_A 6P3D_A 6P7G_A
6P7G_B 6P7G_C 6P7G_D 8C7Y_B 4G9C_A 5VAL_B 6N0Q_B 4DBN_B 4FC0_B 4KSP_B 4KSQ_B
3Q96_B 4H58_C
> show diffatoms
> select diffatoms
4128 atoms, 108 pseudobonds, 4128 residues, 184 models selected
> style sel ball
Changed 4128 atom styles
> select clear
> lighting soft
> save braf_clusters.cxs
Traceback (most recent call last):
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 917, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 646, in save
fserialize(stream, data)
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/serialize.py", line 76, in msgpack_serialize
stream.write(packer.pack(obj))
^^^^^^^^^^^^^^^^
File "msgpack/_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack
File "msgpack/_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack
File "msgpack/_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack
File "msgpack/_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack
File "msgpack/_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack
File "msgpack/_packer.pyx", line 285, in msgpack._cmsgpack.Packer._pack
File "<stringsource>", line 69, in
cfunc.to_py.__Pyx_CFunc_8chimerax_4core_10_serialize_object__lParenobject__rParen_to_py_3obj.wrap
File "src/_serialize.pyx", line 262, in chimerax.core._serialize._encode_ext
RuntimeError: Can't convert object of type: <enum 'Matrix'>
RuntimeError: Can't convert object of type:
File "src/_serialize.pyx", line 262, in chimerax.core._serialize._encode_ext
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute
cmd.run(cmd_text)
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2904, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2904, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core_formats/__init__.py", line 95, in save
return cxs_save(session, path, **kw)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 917, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 646, in save
fserialize(stream, data)
File
"/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/serialize.py", line 76, in msgpack_serialize
stream.write(packer.pack(obj))
^^^^^^^^^^^^^^^^
File "msgpack/_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack
File "msgpack/_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack
File "msgpack/_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack
File "msgpack/_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack
File "msgpack/_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack
File "msgpack/_packer.pyx", line 285, in msgpack._cmsgpack.Packer._pack
File "<stringsource>", line 69, in
cfunc.to_py.__Pyx_CFunc_8chimerax_4core_10_serialize_object__lParenobject__rParen_to_py_3obj.wrap
File "src/_serialize.pyx", line 262, in chimerax.core._serialize._encode_ext
RuntimeError: Can't convert object of type: <enum 'Matrix'>
RuntimeError: Can't convert object of type:
File "src/_serialize.pyx", line 262, in chimerax.core._serialize._encode_ext
See log for complete Python traceback.
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M2 Ultra
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac Studio
Model Identifier: Mac14,14
Model Number: Z1800003VLL/A
Chip: Apple M2 Ultra
Total Number of Cores: 24 (16 performance and 8 efficiency)
Memory: 64 GB
System Firmware Version: 10151.101.3
OS Loader Version: 10151.101.3
Software:
System Software Overview:
System Version: macOS 14.4.1 (23E224)
Kernel Version: Darwin 23.4.0
Time since boot: 2 days, 19 hours, 24 minutes
Graphics/Displays:
Apple M2 Ultra:
Chipset Model: Apple M2 Ultra
Type: GPU
Bus: Built-In
Total Number of Cores: 60
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
PHL 278B1:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
aiobotocore: 2.12.3
aiohttp: 3.9.5
aioitertools: 0.11.0
aiosignal: 1.3.1
alabaster: 0.7.16
alphashape: 1.3.1
annotated-types: 0.6.0
appdirs: 1.4.4
appnope: 0.1.4
asciitree: 0.3.3
asttokens: 2.4.1
attrs: 23.2.0
Babel: 2.14.0
beautifulsoup4: 4.12.3
biopython: 1.83
blockdiag: 3.0.0
blosc2: 2.0.0
botocore: 1.34.69
build: 1.2.1
certifi: 2023.11.17
cffi: 1.16.0
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.16
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.3
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.5
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.4.5
ChimeraX-Atomic: 1.56.1
ChimeraX-AtomicLibrary: 14.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.23.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-copick: 0.1.0
ChimeraX-Core: 1.8.dev202404021803
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-crai: 0.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.9
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.15
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OME-Zarr: 0.5.3
ChimeraX-OpenCommand: 1.13.4
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PhenixUI: 1.2.2
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-TetraScapeCommand: 0.1
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.37.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
click: 8.1.7
click-log: 0.4.0
cloudpickle: 3.0.0
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.0
copick: 0.1.dev45+g5a19260
cripser: 0.0.13
cryptography: 42.0.5
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.9
dask: 2024.4.2
debugpy: 1.8.1
decorator: 5.1.1
distributed: 2024.4.2
docutils: 0.20.1
executing: 2.0.1
fasteners: 0.19
filelock: 3.13.4
fonttools: 4.50.0
frozenlist: 1.4.1
fsspec: 2024.3.1
funcparserlib: 2.0.0a0
geomdl: 5.3.1
glfw: 2.7.0
grako: 3.16.5
h5py: 3.10.0
hatchling: 1.24.2
html2text: 2024.2.26
idna: 3.6
ihm: 1.0
imagecodecs: 2024.1.1
imageio: 2.34.1
imagesize: 1.4.1
importlib-metadata: 7.1.0
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.2
jedi: 0.19.1
Jinja2: 3.1.3
jmespath: 1.0.1
joblib: 1.4.0
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.10
kiwisolver: 1.4.5
lazy-loader: 0.4
line-profiler: 4.1.2
llvmlite: 0.42.0
locket: 1.0.0
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.6
mpmath: 1.3.0
mrcfile: 1.5.0
msgpack: 1.0.8
multidict: 6.0.5
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.0.1
nptyping: 2.5.0
numba: 0.59.1
numcodecs: 0.12.1
numexpr: 2.10.0
numpy: 1.26.4
ome-zarr: 0.8.3
openvr: 1.26.701
packaging: 23.2
pandas: 2.2.2
ParmEd: 4.2.2
parso: 0.8.3
partd: 1.4.1
pathspec: 0.12.1
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.0
pluggy: 1.5.0
prompt-toolkit: 3.0.43
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pyarrow: 16.0.0
pycollada: 0.8
pycparser: 2.22
pydantic: 2.7.1
pydantic-core: 2.18.2
pydicom: 2.3.0
pygments: 2.17.2
pynmrstar: 3.3.4
pynndescent: 0.5.12
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3302
pyparsing: 3.1.2
pyproject-hooks: 1.0.0
PyQt6: 6.6.1
PyQt6-Qt6: 6.6.2
PyQt6-sip: 13.6.0
PyQt6-WebEngine: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.2
pyspnego: 0.10.2
python-dateutil: 2.9.0.post0
pytz: 2024.1
PyYAML: 6.0.1
pyzmq: 25.1.2
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
Rtree: 1.1.0
s3fs: 2024.3.1
scikit-image: 0.23.2
scikit-learn: 1.4.2
scipy: 1.13.0
setuptools: 69.2.0
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
shapely: 2.0.2
six: 1.16.0
smbprotocol: 1.13.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
starfile: 0.5.6
superqt: 0.6.3
sympy: 1.12
tables: 3.8.0
tblib: 3.0.0
tcia-utils: 1.5.1
threadpoolctl: 3.4.0
tifffile: 2024.1.30
tinyarray: 1.2.4
toolz: 0.12.1
torch: 2.2.2
tornado: 6.4
tqdm: 4.66.2
traitlets: 5.14.2
trimesh: 4.0.10
trove-classifiers: 2024.4.10
typing-extensions: 4.10.0
tzdata: 2024.1
umap-learn: 0.5.6
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.10
wrapt: 1.16.0
yarl: 1.9.4
zarr: 2.17.2
zict: 3.0.0
zipp: 3.18.1
Change History (4)
comment:1 by , 18 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Sessions |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Session save failed: Can't convert object of type: <enum 'Matrix'> |
comment:2 by , 18 months ago
I tried to make one of the parameters to blastprotein accept an enum of strings as well as the string itself. This will be easy to revert, sorry for the inconvenience. Every once in a while I try to move something away from StringTyping https://wiki.c2.com/?StringlyTyped and rediscover that sessions can't save enums.
comment:4 by , 18 months ago
| Resolution: | → limitation |
|---|---|
| Status: | assigned → closed |
Sessions support IntEnum.
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Not sure where enum Matrix is coming from.