Timeline



Jun 10, 2022:

6:32 PM Ticket #7077 (Remove distutils) created by Zach Pearson
It's probably enough to from setuptools import distutils in …
5:23 PM ChangeLog edited by Tom Goddard
(diff)
1:20 PM Ticket #7074 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
duplicate: Duplicate of #7072.
1:19 PM Ticket #7073 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
duplicate: Duplicate of #7072.
1:16 PM Ticket #7072 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
can't reproduce: Looks like ChimeraX gave this error on startup trying to draw the …
1:11 PM Ticket #7076 (Registration: month not in months list) created by chimerax-bug-report@…
[…]
1:04 PM Ticket #7071 (Capturing thumbnail image: Attempt to retrieve context when no valid ...) closed by Tom Goddard
can't reproduce: Capturing an image made the graphics context current without errors, …
1:00 PM Ticket #7070 (Access violation drawing new frame in glBufferData() on Windows) closed by Tom Goddard
nonchimerax: OpenGL graphics driver crash in glBufferData() on old laptop with AMD …
10:43 AM Ticket #7068 (Crash in event loop) closed by pett
can't reproduce
8:03 AM Ticket #7075 (Crash saving atomic session state) created by jose.soto@…
[…]
6:47 AM Ticket #7074 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:47 AM Ticket #7073 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:40 AM Ticket #7072 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:38 AM Ticket #7071 (Capturing thumbnail image: Attempt to retrieve context when no valid ...) created by chimerax-bug-report@…
[…]
4:57 AM Ticket #7070 (Access violation drawing new frame in glBufferData() on Windows) created by chimerax-bug-report@…
[…]
3:24 AM Ticket #7069 (Surface session restore: updaters is None) created by chimerax-bug-report@…
[…]
2:36 AM Ticket #7068 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:21 AM ChangeLog edited by Greg Couch
(diff)

Jun 9, 2022:

5:06 PM Ticket #7067 (Save dialog enhancement) created by jack.stevenson@…
[…] Screen Shot 2022-06-09 at 17.02.51.png
4:46 PM Ticket #7062 (Crash dragging/dropping on color panel) closed by pett
can't reproduce
4:44 PM Ticket #7061 (fork failure) closed by pett
nonchimerax: Was using 9.1GB
4:42 PM Ticket #7060 (Read pseudobonds: syntax error should not produce traceback) closed by pett
duplicate: Duplicate of #6531
4:36 PM NTTData edited by Tom Goddard
(diff)
4:35 PM NIAID2022 created by Tom Goddard
4:32 PM Dev2022-6-12 edited by Zach Pearson
(diff)
4:32 PM Dev2022-6-12 edited by Zach Pearson
(diff)
4:26 PM Ticket #7059 (Crash getting atomic session state) closed by pett
can't reproduce
4:09 PM Ticket #7066 (Douse tool enhancements) created by pett
- Default representation for 7rtb is sphere. To best see the …
3:54 PM ChangeLog edited by pett
(diff)
3:08 PM Ticket #7065 (Smarter display of Updates) created by pett
It would be good if the Updates tool only showed itself if updates are …
3:05 PM Ticket #7064 (Show bundle release notes in Updates) created by pett
It would be good to show the Release Notes section (multiple section …
2:38 PM 2022-6-9 edited by Tom Goddard
(diff)
2:35 PM 2022-6-9 edited by Tom Goddard
(diff)
2:35 PM 2022-6-9 edited by Tom Goddard
(diff)
2:00 PM NTTData edited by Elaine Meng
(diff)
1:59 PM NTTData edited by Elaine Meng
(diff)
1:54 PM Ticket #7063 (RFE: Decouple core and app version numbers) created by Zach Pearson
In the group meeting today Greg suggested having an RFE on this for …
1:39 PM NTTData edited by Elaine Meng
(diff)
12:38 PM Ticket #7062 (Crash dragging/dropping on color panel) created by chimerax-bug-report@…
[…]
12:26 PM Ticket #7061 (fork failure) created by chimerax-bug-report@…
[…]
9:55 AM Ticket #7058 (Deleted options still getting callbacks) closed by pett
duplicate
9:48 AM Ticket #7057 (Crash in event loop in SLSIsDisplayChangedSeedValid) closed by pett
can't reproduce
9:45 AM Ticket #7056 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
9:36 AM Ticket #7060 (Read pseudobonds: syntax error should not produce traceback) created by chimerax-bug-report@…
[…]
2:16 AM Ticket #7059 (Crash getting atomic session state) created by chimerax-bug-report@…
[…]
1:07 AM Ticket #7058 (Deleted options still getting callbacks) created by chimerax-bug-report@…
[…]
12:18 AM Ticket #7057 (Crash in event loop in SLSIsDisplayChangedSeedValid) created by chimerax-bug-report@…
[…]

Jun 8, 2022:

11:30 PM Ticket #7056 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
5:55 PM Ticket #7055 (AlphaFold database PAE fetch fails with lowercase uniprot id) closed by Tom Goddard
fixed: Fixed. Made uniprot id argument parsing always return upper case.
5:53 PM Ticket #7055 (AlphaFold database PAE fetch fails with lowercase uniprot id) created by goddard@…
[…]
4:20 PM Ticket #6621 (Show pseudobonds between all adjacent residues colored by AlphaFold ...) closed by Tom Goddard
fixed: I added a command to make the colored pseudobonds […] The …
1:00 PM Ticket #7053 (Session restore: invalid load key, '\x04') closed by pett
duplicate
12:25 PM Ticket #7054 (Deiconifying ChimeraX after help viewer deleted gives error) created by goddard@…
[…]
12:12 PM Ticket #7053 (Session restore: invalid load key, '\x04') created by chimerax-bug-report@…
[…]
10:59 AM Ticket #7052 (Crash opening PDB file) closed by pett
can't reproduce
10:50 AM Ticket #7052 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
10:05 AM Ticket #6837 (Have undocked tools forward keystrokes to command line) closed by pett
fixed: Well, sort of fixed. I re-enabled keystroke forwarding for …
9:10 AM Ticket #7044 (kerning) closed by pett
fixed: Excellent! --Eric
9:04 AM Ticket #7051 (Sequence viewer infinite recursion) closed by pett
can't reproduce
9:03 AM Ticket #7050 (Crash during color panel drag/drop) closed by pett
can't reproduce
9:00 AM Ticket #7049 (Crash in event loop) closed by pett
can't reproduce
8:58 AM Ticket #7048 (Crash in event loop) closed by pett
can't reproduce
8:43 AM Ticket #7047 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce
3:22 AM Ticket #7051 (Sequence viewer infinite recursion) created by chimerax-bug-report@…
[…]
2:51 AM Ticket #7050 (Crash during color panel drag/drop) created by chimerax-bug-report@…
[…]
2:10 AM Ticket #7049 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 7, 2022:

6:11 PM Ticket #7048 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:07 PM Ticket #7047 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
5:44 PM Ticket #7045 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: This error drawing the status line on an expose event has been …
5:35 PM Ticket #7046 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
5:31 PM Ticket #7046 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:07 PM Ticket #7045 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
1:28 PM Ticket #7044 (kerning) created by jack.stevenson@…
[…] Screen Shot 2022-06-07 at 13.27.04.png
11:33 AM ChangeLog edited by Elaine Meng
(diff)
10:14 AM Dev2022-6-16 created by Tom Goddard
10:14 AM Dev2022-6-12 created by Tom Goddard
10:12 AM 2022-6-9 created by Tom Goddard
10:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:18 AM Ticket #7043 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) closed by pett
duplicate: Hi Fadwa, Thanks for reporting this problem. It has been fixed in …
9:14 AM Ticket #7042 (Unknown crash) closed by pett
can't reproduce: Looks like a crash in the runtime loader. No Python traceback.
9:11 AM Ticket #7041 (Unknown crash) closed by pett
can't reproduce: Looks like the process was forking and was already at 9GB
9:08 AM Ticket #7040 (multiprocessing) closed by pett
not a bug: Hi Shubham, What you are trying to do will not work because creating …
8:52 AM Ticket #7039 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:50 AM Ticket #7038 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:48 AM Ticket #7037 (Crash in event loop) closed by pett
can't reproduce
6:40 AM Ticket #7043 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) created by fatmaouf@…
[…] log_chimeraXerror.txt
5:39 AM Ticket #7042 (Unknown crash) created by chimerax-bug-report@…
[…]
5:09 AM Ticket #7041 (Unknown crash) created by chimerax-bug-report@…
[…]
4:48 AM Ticket #7040 (multiprocessing) created by sdramgoo@…
[…]
3:59 AM Ticket #7039 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Jun 6, 2022:

10:27 PM Ticket #7038 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
8:31 PM Ticket #7037 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:49 PM ChangeLog edited by Elaine Meng
(diff)
6:45 PM ChangeLog edited by Elaine Meng
(diff)
6:42 PM Ticket #7025 (Attempt to log command for deleted bond rotation) closed by Tom Goddard
fixed: Fixed. The traceback was from closing the session while rotating a …
5:16 PM Ticket #5991 (cross-eyed stereo) closed by Tom Goddard
fixed: Done. Added in daily build, not in ChimeraX 1.4. Added "camera …
4:26 PM Ticket #7036 (Add surface invert command) closed by Tom Goddard
fixed: Added surface invertShown command.
4:25 PM Ticket #7036 (Add surface invert command) created by xdai@…
Port surface invert shown command from Chimera to ChimeraX. This is …
4:09 PM Dev2022-6-6 edited by Tom Goddard
(diff)
1:57 PM Ticket #7035 (Docked sequence viewer panels made main window 16000 pixels high) created by chimerax-bug-report@…
[…]
12:08 PM Dev2022-6-6 edited by Zach Pearson
(diff)
11:30 AM Ticket #7033 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: Hi Michael, Thanks for reporting this problem. We believe it is …
11:26 AM Ticket #7032 (Unknown crash) closed by pett
can't reproduce
11:23 AM Ticket #7031 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:21 AM Ticket #7030 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:19 AM Ticket #7028 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:12 AM Ticket #7027 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:11 AM Ticket #7026 (No space left on device) closed by pett
nonchimerax
11:02 AM Ticket #7024 (Crash in Residue::ordered_min_backbone_atom_names()) closed by pett
can't reproduce: Would really need the PDB file in order to track this down.
8:38 AM Ticket #7034 (Preview Toolshed down) created by Tristan Croll
[…]
7:47 AM Ticket #7033 (Crash using File→Open on Windows and/or in return statement) created by weberm@…
[…]
7:36 AM Ticket #7032 (Unknown crash) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #7031 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:16 AM Ticket #7030 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:12 AM Ticket #6996 (OpenMMException: Error uploading array TabulatedFunction) closed by Tristan Croll
duplicate: Ancient low-end GPU ran out of memory. Keeping related ticket #6998
4:06 AM Ticket #6999 (OpenMMException: Error uploading array TabulatedFunction) closed by Tristan Croll
limitation: Hi Dennis, I'm afraid the problem here is that your hardware is simply …

Jun 5, 2022:

7:25 PM Ticket #7028 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:04 PM Ticket #7027 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #7026 (No space left on device) created by chimerax-bug-report@…
[…]

Jun 4, 2022:

7:48 PM Ticket #7025 (Attempt to log command for deleted bond rotation) created by chimerax-bug-report@…
[…]
5:24 AM Ticket #7024 (Crash in Residue::ordered_min_backbone_atom_names()) created by chimerax-bug-report@…
[…]

Jun 3, 2022:

5:48 PM Ticket #7023 (Graphics crash, macOS 11.6.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
4:43 PM ChangeLog edited by Elaine Meng
(diff)
4:40 PM Ticket #7019 (Save tool position: TypeError: int() argument must be a string, a ...) closed by pett
fixed
1:53 PM Milestone 1.4 completed
== New Features == * Compute charges: A command to calculate and …
12:30 PM Ticket #7023 (Graphics crash, macOS 11.6.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
11:47 AM Ticket #7022 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.3
11:35 AM Ticket #7022 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
11:18 AM Ticket #7021 (Save TIFF, not TIFF stack) closed by pett
not a bug: Hi Jing, In order to save a TIFF image you have to select "TIFF …
10:16 AM Ticket #7002 (GL.glActiveTexture(): access violation) closed by Tom Goddard
can't reproduce: Looks like a graphics driver crash in bind_texture() on RTX 3070 Ti on …
9:43 AM Ticket #7014 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:37 AM Ticket #7012 (No space left on device) closed by pett
nonchimerax
9:31 AM Ticket #7011 (Crash in event loop) closed by pett
can't reproduce
9:02 AM Ticket #7005 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:59 AM Ticket #7004 (Crash in event loop) closed by pett
can't reproduce: 1.2.5
8:56 AM Ticket #7003 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
8:14 AM Ticket #7021 (Save TIFF, not TIFF stack) created by jing.16.liu@…
[…]
6:26 AM Ticket #7020 (Crash generating UUID) created by chimerax-bug-report@…
[…]

Jun 2, 2022:

11:59 PM Ticket #7019 (Save tool position: TypeError: int() argument must be a string, a ...) created by goddard@…
[…]
11:48 PM Ticket #6991 (self._positions is None after model ID changed and closed) closed by Tom Goddard
fixed: Fixed. Made volume code that closes volume surfaces do it correctly …
11:01 PM Ticket #7001 (Crash in event loop after labeling) closed by Tom Goddard
can't reproduce: Not clear that the event loop crash had anything to do with the last …
10:15 PM Ticket #7018 (Port "surface transform" command to scale surfaces) closed by Tom Goddard
fixed: Done. Added "surface transform" command to ChimeraX daily builds, not …
10:13 PM Ticket #7018 (Port "surface transform" command to scale surfaces) created by mpm896@…
Begin forwarded message: From: "Martinez, Matthew via ChimeraX-users" …
6:26 PM Ticket #7000 (Crash in event loop after session opened) closed by pett
can't reproduce
6:19 PM Ticket #6997 (OpenMMException: Error uploading array TabulatedFunction) closed by pett
duplicate
6:15 PM Ticket #6995 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
6:13 PM Ticket #6994 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
6:11 PM Ticket #6993 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by pett
duplicate
6:09 PM Ticket #7017 (networkx: no libbz2) created by murpholinox@…
[…]
5:46 PM Ticket #6990 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
2:01 PM Ticket #7016 (RFE: alignment for medical images (DICOM etc.)) created by Elaine Meng
Are there quick methods that can be applied to overlay two medical …
1:36 PM DeveloperMeetings edited by Zach Pearson
(diff)
1:36 PM Dev2022-6-6 created by Zach Pearson
1:35 PM Dev2022-6-2 edited by Zach Pearson
(diff)
1:30 PM Ticket #7015 (DICOM: was "airways" preset always so dim?) created by Elaine Meng
I wonder if something changed with the airways preset (from clicking …
1:27 PM Ticket #7014 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:38 PM Ticket #7013 (DICOM: RTSTRUCT not within the proper study in models hierarchy) created by Elaine Meng
For Head-Neck Cetuximab collection, patient ID 0522c0027, there are 3 …
12:26 PM 2022-6-2 edited by Tom Goddard
(diff)
8:24 AM Ticket #7012 (No space left on device) created by chimerax-bug-report@…
[…]

Jun 1, 2022:

9:28 PM Ticket #7011 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:03 PM Ticket #7010 (Crash forking process) created by rebecca.gorrell@…
[…]
4:31 PM Ticket #7009 (Toolshed crash trying to get bundle's module) created by chimerax-bug-report@…
[…]
12:58 PM Ticket #6982 (Segger session save: invalid literal for int() with base 10) closed by Tom Goddard
fixed: Fixed in ChimeraX 1.5, not in 1.4. Saving session failed because …
12:27 PM Ticket #7008 (ChimeraX nogui mode: AttributeError: 'UI' object has no attribute ...) closed by Tom Goddard
fixed: Fixed. In nogui mode session.ui is a different class that does not …
12:20 PM Ticket #7008 (ChimeraX nogui mode: AttributeError: 'UI' object has no attribute ...) created by Tom Goddard
$ cx --nogui Traceback (most recent call last): File …
9:48 AM Ticket #7007 (Long atom spec crashes ChimeraX) created by wenxiang.cao@…
[…]
6:46 AM Ticket #7006 (Crash running registration dialog) created by chimerax-bug-report@…
[…]
12:24 AM Ticket #7005 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

May 31, 2022:

10:28 PM Ticket #7004 (Crash in event loop) created by chimerax-bug-report@…
[…]
10:12 PM Modern ChimeraX (Technical) - 26 May.pdf attached to 2022-5-26 by Zach Pearson
9:56 PM 2022-6-2 created by Tom Goddard
9:54 PM 2022-5-26 edited by Tom Goddard
(diff)
9:46 PM DeveloperMeetings edited by Tom Goddard
(diff)
9:23 PM Ticket #6983 (Graphics crash, macOS 12.2.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Running ISOLDE simulation.
9:53 AM Ticket #7003 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
9:35 AM Ticket #7002 (GL.glActiveTexture(): access violation) created by chimerax-bug-report@…
[…]
8:28 AM Ticket #7001 (Crash in event loop after labeling) created by chimerax-bug-report@…
[…]
7:42 AM Ticket #7000 (Crash in event loop after session opened) created by chimerax-bug-report@…
[…]
4:59 AM Ticket #6999 (OpenMMException: Error uploading array TabulatedFunction) created by ddanneck@…
[…]
4:44 AM Ticket #6998 (ISOLDE: detect and block use of under-resourced GPUs) created by chimerax-bug-report@…
[…]
4:37 AM Ticket #6997 (OpenMMException: Error uploading array TabulatedFunction) created by chimerax-bug-report@…
[…]
4:32 AM Ticket #6996 (OpenMMException: Error uploading array TabulatedFunction) created by chimerax-bug-report@…
[…]
3:46 AM Ticket #6995 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:28 AM Ticket #6994 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
2:53 AM Ticket #6993 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) created by chimerax-bug-report@…
[…]
1:37 AM Ticket #6992 (Session restore: cannot peek() on Dropbox file drop) created by chimerax-bug-report@…
[…]

May 30, 2022:

9:04 PM Ticket #6991 (self._positions is None after model ID changed and closed) created by chimerax-bug-report@…
[…]
8:27 PM Ticket #6990 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:38 PM Ticket #6989 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: 1.2.5
9:58 AM Ticket #6989 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
6:30 AM Ticket #6988 (RFE: have warnings reveal log if tabbed) created by Tristan Croll
[…]

May 29, 2022:

9:38 PM Ticket #6987 (Crash using File→Open on Windows) created by k.satyamurthy@…
[…]
3:20 PM Ticket #6984 (save_command bundle fails to initialize when no Qt available) closed by pett
fixed
10:59 AM Ticket #6986 (Crash creating QWebEngineProfile) closed by pett
duplicate
10:31 AM Ticket #6985 (Crash in Qt on exit) closed by pett
can't reproduce
8:21 AM Ticket #6986 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
8:01 AM Ticket #6985 (Crash in Qt on exit) created by chimerax-bug-report@…
[…]

May 28, 2022:

10:15 PM Ticket #6984 (save_command bundle fails to initialize when no Qt available) created by Greg Couch
I was testing the CentOS 9 singularity build and ChimeraX gives …
1:26 PM Ticket #6983 (Graphics crash, macOS 12.2.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]

May 27, 2022:

10:39 PM Ticket #6982 (Segger session save: invalid literal for int() with base 10) created by chimerax-bug-report@…
[…]
7:51 PM Ticket #5951 (Put Qt fatal message output into bug reports) closed by Tom Goddard
fixed: Done. Qt fatal errors will now be written to the faulthandler log …
6:16 PM Ticket #6981 (Show clip caps on atoms and ribbons) created by Tom Goddard
Zheng Ruan asked about showing clip caps on ribbon helix tubes. …
6:12 PM Ticket #6980 (Clip caps on drawings which are not models don't update) closed by Tom Goddard
fixed: Fixed. The non-model clip caps had the wrong clip plane name assigned …
6:09 PM Ticket #6980 (Clip caps on drawings which are not models don't update) created by goddard@…
[…]
4:52 PM Ticket #6979 (ClipCapDrawing missing argument) closed by Tom Goddard
fixed: Fixed. Added drawing argument to constructor call. I guess we never …
4:28 PM Ticket #6979 (ClipCapDrawing missing argument) created by goddard@…
[…]
3:45 PM Ticket #6978 (Blocking not honored for web jobs) created by pett
[…] nonassoc.fa
1:17 PM Ticket #6977 (PDB two-letter chain ID sometimes not recognized if TER missing) created by apadavannil@…
[…]
1:14 PM Ticket #6976 (Minimize mouse mode: Missing atoms or parameterization needed) closed by Tom Goddard
limitation: Unfortunately ChimeraX minimize and tug mouse modes only handle …
11:39 AM Ticket #6976 (Minimize mouse mode: Missing atoms or parameterization needed) created by nxb318@…
[…]
10:01 AM Ticket #6975 (Crash in event loop) closed by pett
can't reproduce: After opening session
9:46 AM Ticket #6975 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:23 AM Ticket #6972 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
8:56 AM Ticket #6974 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: Hi Fernando, Thanks for reporting this problem. We have never been …
8:52 AM Ticket #6973 ('SaveModelOptionWidget' object has no attribute '_name') closed by pett
duplicate: Hi Mohinder, Thanks for reporting this problem. It has been fixed in …
7:03 AM Ticket #6974 (Crash showing Rapid Access at startup) created by f.bruno@…
[…]
2:35 AM Ticket #6973 ('SaveModelOptionWidget' object has no attribute '_name') created by Mohinder.pal@…
[…]

May 26, 2022:

10:16 PM Ticket #6972 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
5:30 PM Ticket #6971 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard
can't reproduce: A status line expose event at startup gave an OpenGL error. Have seen …
5:19 PM Ticket #6963 (Crash computing surface) closed by Tom Goddard
can't reproduce: Appears to have crashed computing molecular surfaces for PDB 6uv5. I …
4:39 PM Ticket #6965 (sym: normalize_vector() takes 1 positional argument but 3 were given) closed by Tom Goddard
duplicate: Fixed this a few weeks ago.
4:26 PM Ticket #6970 (chimerax-1.4-rc2022.05.25 generic Linux 64-bit doesn't work) closed by Greg Couch
fixed: Fixed. The OS used to build the generic version of ChimeraX is too old …
4:04 PM Ticket #6969 (Qt6: QFileDialog.FileMode.DirectoryOnly) closed by pett
fixed: Put a fix in the release candidate and the daily build. The "simple" …
3:13 PM Ticket #6971 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by chimerax-bug-report@…
[…]
3:13 PM Ticket #6968 (Session restore: invalid load key) closed by pett
duplicate: Hi Nicholas, Thanks for reporting this problem. The problem is that …
3:06 PM Ticket #6967 (Crash in Qt at app quit) closed by pett
duplicate: Hi Maria, Thanks for reporting this problem. I would recommend …
2:45 PM Ticket #6970 (chimerax-1.4-rc2022.05.25 generic Linux 64-bit doesn't work) created by x6laboratory@…
[…]
2:35 PM Ticket #6969 (Qt6: QFileDialog.FileMode.DirectoryOnly) created by thibault.tubiana@…
[…]
2:03 PM NTTData edited by Elaine Meng
(diff)
2:00 PM Ticket #6966 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
1:53 PM NTTData edited by Elaine Meng
(diff)
1:52 PM NTTData edited by Elaine Meng
(diff)
1:32 PM NTTData edited by Elaine Meng
(diff)
11:46 AM Ticket #6968 (Session restore: invalid load key) created by nicolas.coudray@…
[…]
11:35 AM Ticket #6967 (Crash in Qt at app quit) created by maru.jaimegarza@…
[…]
10:58 AM Ticket #6960 (ISOLDE installation) closed by pett
not a bug: Hi, There is no version of ISOLDE compatible with the 1.4 release …
9:15 AM Ticket #6966 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
7:32 AM Ticket #6965 (sym: normalize_vector() takes 1 positional argument but 3 were given) created by chimerax-bug-report@…
[…]
6:37 AM Ticket #6964 (Fetching version information: certificate verify failed: unable to get ...) created by tjrabbit30@…
[…]
6:09 AM Ticket #6963 (Crash computing surface) created by chimerax-bug-report@…
[…]
12:58 AM Ticket #6955 (Cannot allocate Clipper array) closed by Tristan Croll
can't reproduce: Going to close this for now. Please let me know if it persists after …

May 25, 2022:

9:59 PM Ticket #6959 (AlphaFold prediction energy OpenMM minimization always fails) closed by Tom Goddard
fixed: Fixed. Specified conda cudatoolkit version 11.2 in colab openmm …
7:31 PM Ticket #6962 (Volume histogram: RuntimeWarning: invalid value encountered in log) closed by Tom Goddard
fixed: Fixed. The C++ bin_counts() code was filling an in32 array that was …
6:55 PM Ticket #6951 (Crash masking volume) closed by Tom Goddard
fixed: Fixed in daily build, not in ChimeraX 1.4. After changing the array …
6:51 PM Ticket #6962 (Volume histogram: RuntimeWarning: invalid value encountered in log) created by goddard@…
[…]
6:13 PM Ticket #6961 (AlphaFold prediction: A UTF-8 locale is required. Got ANSI_X3.4-1968) created by Tom Goddard
Restarting an AlphaFold prediction after an OpenMM minimization …
5:55 PM Ticket #6960 (ISOLDE installation) created by murpholinoxpeligro@…
[…]
3:12 PM Ticket #6959 (AlphaFold prediction energy OpenMM minimization always fails) created by Tom Goddard
Tomas Fernandez noted in a YouTube comment of a ChimeraX AlphaFold
2:27 PM Ticket #6958 (Fix AlphaFold prediction using wrong Colab notebook) closed by Tom Goddard
fixed: Fixed in 1.4 and daily build. The current python notebook file name …
1:49 PM Ticket #6958 (Fix AlphaFold prediction using wrong Colab notebook) created by Tom Goddard
On April 4, 2022 when I updated the ChimeraX AlphaFold Colab notebook …
1:20 PM Ticket #6957 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
1:05 PM Ticket #6957 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
11:44 AM Ticket #6956 (Error initializing context: clCreateContext) closed by Tristan Croll
duplicate: As for #6955, looks like you're out of memory (-6 is …
11:30 AM Ticket #6949 (Failed to create NSOpenGLContext) closed by Tom Goddard
can't reproduce: Qt was handling a resize event and then called …
11:26 AM Ticket #6954 (PDB assembly chain IDs) closed by pett
fixed: Hi Yumeng, Thanks for reporting this problem. The issue is that …
11:09 AM Ticket #6953 (Long atom spec crashes ChimeraX) closed by pett
duplicate: Hi Tristan, This is a problem with the grako parser using deep …
10:56 AM Ticket #6956 (Error initializing context: clCreateContext) created by 352884536@…
[…]
10:55 AM Ticket #6955 (Cannot allocate Clipper array) created by 352884536@…
[…]
9:31 AM Ticket #6950 (Crash saving session) closed by pett
can't reproduce: Hi Xiaoli, Thanks for reporting this problem. The primary thing I …
9:28 AM Ticket #6954 (PDB assembly chain IDs) created by yumeng.yan@…
[…]
9:17 AM Ticket #6948 (Unknown crash) closed by pett
can't reproduce: 1.4rc It looks like it was processing a typed command, but other than …
4:15 AM Ticket #6953 (Long atom spec crashes ChimeraX) created by Tristan Croll
[…]
1:29 AM Ticket #6952 (QMainWindowLayout::tabPosition called with out-of-bounds value) created by Tristan Croll
[…]

May 24, 2022:

11:04 PM Ticket #6951 (Crash masking volume) created by gimshan.jayawardena@…
[…]
7:52 PM Ticket #6950 (Crash saving session) created by laituya@…
[…]
7:46 PM Ticket #6949 (Failed to create NSOpenGLContext) created by chimerax-bug-report@…
[…]
4:06 PM Ticket #6948 (Unknown crash) created by chimerax-bug-report@…
[…]
1:00 PM Ticket #6946 (Allow copying volume fit list to clip board) closed by Tom Goddard
fixed: Added copy to clipboard for volume fit list. Tested on Mac using …
12:30 PM Ticket #6947 (Make coordset act immediately if a single frame specified) closed by Tom Goddard
fixed: Done. In the rare case where you want coordset to jump to a single …
12:25 PM Ticket #6947 (Make coordset act immediately if a single frame specified) created by sdramgoolam@…
Using the coordset in a script to jump to a specific coordinate set …
12:12 PM Dev2022-6-2 created by Tom Goddard
12:11 PM 2022-5-26 created by Tom Goddard
12:09 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:05 PM Ticket #6946 (Allow copying volume fit list to clip board) created by johnskalidis@…
Begin forwarded message: From: Ioannis Skalidis via ChimeraX-users …
11:46 AM Ticket #6942 (Crash in Qt event loop while running AlphaFold prediction) closed by Tom Goddard
can't reproduce
11:23 AM Ticket #6945 (Return unminimized structure if AlphaFold minimization fails) created by Tom Goddard
There is an option in the AlphaFold tool to turn off minimization. …
10:51 AM Ticket #6944 (Deleting status bar: wrapped C/C++ object of type QScreen has been deleted) closed by pett
duplicate
10:42 AM Ticket #6943 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
5:53 AM Ticket #6944 (Deleting status bar: wrapped C/C++ object of type QScreen has been deleted) created by chimerax-bug-report@…
[…]
5:07 AM Ticket #6943 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:16 AM Ticket #6942 (Crash in Qt event loop while running AlphaFold prediction) created by chimerax-bug-report@…
[…]

May 23, 2022:

7:25 PM Ticket #6941 (Bad PAE mouse-drag callback) closed by Tom Goddard
fixed: Fixed. Made code ignore drags with modifier keys held down. Code was …
7:08 PM Ticket #6915 (Tried to get the position of deleted drawing "Room camera") closed by Tom Goddard
fixed: Fixed. The second and third tracebacks are the same and were caused …
5:03 PM Ticket #6940 (RFE: make "key" command work with palette-name alone to give blank labels) closed by pett
fixed: In tomorrow's daily build (not release candidate)
3:46 PM Ticket #6939 (Windows ChimeraX does not crash on access violation) closed by Tom Goddard
limitation: I don't think there is anything to be done about ctypes catching …
3:35 PM Ticket #6788 (Remove Windows crash reporting in ChimeraX 1.4) closed by Tom Goddard
fixed: Done. Disabled crash reporting on Windows in ChimeraX 1.4 and develop …
3:28 PM Ticket #6941 (Bad PAE mouse-drag callback) created by Elaine Meng
[…]
3:26 PM Ticket #6940 (RFE: make "key" command work with palette-name alone to give blank labels) created by Elaine Meng
Currently you have to know the number of colors in the palette and …
2:33 PM Ticket #6936 (SpinBox Return keys forwarded to command line) closed by pett
fixed: Okay, fix committed to daily build
12:46 PM Ticket #6939 (Windows ChimeraX does not crash on access violation) created by goddard@…
[…]
12:38 PM Ticket #6938 (Crash in event loop) created by smsherrer@…
[…]
12:15 PM Ticket #6923 (QOpenGLFramebufferObject: Framebuffer incomplete attachment) closed by Tom Goddard
can't reproduce: Appears Qt had trouble with its OpenGL rendering. Could be some mixup …
11:40 AM Ticket #6935 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: Status line expose event produced an OpenGL error after successfully …
11:38 AM Ticket #6933 (Graphics crash, macOS 10.15.7, Radeon Pro 570X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
11:19 AM Ticket #6934 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.3
11:13 AM Ticket #6932 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: Hi Bahram, Thanks for reporting this problem. We believe it is fixed …
11:10 AM Ticket #6931 (Problem importing translated Chimera session file?) closed by pett
can't reproduce: Is the traceback truncated? What's with the "close session" command …
10:40 AM Ticket #6929 (Crash in event loop) closed by pett
can't reproduce
10:38 AM Ticket #6928 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:35 AM Ticket #6927 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:30 AM Ticket #6925 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: 1.4rc unfortunately
10:21 AM Ticket #6937 (Save AlphaFold PAE plots in sessions) created by Tom Goddard
Save PAE plot data and coloring in session files.
8:45 AM Ticket #6936 (SpinBox Return keys forwarded to command line) created by Tristan Croll
[…]
2:46 AM Ticket #6935 (glClear: invalid framebuffer operation) created by marek.sebesta@…
[…]
1:24 AM Ticket #6934 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]

May 22, 2022:

11:29 PM Ticket #6933 (Graphics crash, macOS 10.15.7, Radeon Pro 570X) created by chimerax-bug-report@…
[…]
7:49 PM Ticket #6932 (Crash using File→Open on Windows and/or in return statement) created by pobah169@…
[…]
4:52 AM Ticket #6931 (Problem importing translated Chimera session file?) created by chimerax-bug-report@…
[…]

May 21, 2022:

8:12 PM Ticket #6930 (Backwards-compatibility custom-attribute classes lack "include_state" ...) created by chimerax-bug-report@…
[…]
10:05 AM Ticket #6929 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:17 AM Ticket #6928 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:36 AM Ticket #6927 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

May 20, 2022:

9:22 PM Ticket #6926 (Problem fetching mmCIF template: URL can't contain control characters) created by chimerax-bug-report@…
[…]
7:54 PM Ticket #6925 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
12:10 PM Ticket #6924 (QXcbConnection: XCB error:) created by nxb318@…
[…]
9:01 AM Ticket #6920 (Crash in event loop) closed by pett
can't reproduce
8:56 AM Ticket #6923 (QOpenGLFramebufferObject: Framebuffer incomplete attachment) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #6922 (Update core setup.py to pyproject.toml) created by Zach Pearson
Will start this effort in an isolated branch with no other changes and …
12:00 AM Ticket #6921 (RFE: Flatten the namespace package in the source code, somehow) created by Zach Pearson
For much the same reasons as #6917, where I said "Having different …

May 19, 2022:

11:36 PM Ticket #6920 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:12 PM Ticket #6918 (Read argv in a Pythonic way in ChimeraX_main.py) closed by Greg Couch
not a bug: This argument makes no sense. init() is called with sys.argv. That …
8:46 PM Ticket #6919 (Segfault in GUI module on macOS) created by chimerax-bug-report@…
[…]
7:28 PM Ticket #6918 (Read argv in a Pythonic way in ChimeraX_main.py) created by Zach Pearson
[https://github.com/RBVI/ChimeraX/blob/1506c64368b13dbeb1a9bc9e9a26695c
7:20 PM Ticket #6917 (RFE: Ensure bundles have the same source and installed names) created by Zach Pearson
Having different names for source folders vs. installed folders breaks …
7:10 PM Ticket #6914 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
7:08 PM Ticket #6913 (Graphics crash, macOS 10.14.6, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
7:03 PM Ticket #6912 (Save GLTF: index is out of bounds for axis) closed by Tom Goddard
duplicate: Duplicate of #4788 fixed 11 months ago.
6:38 PM Ticket #6916 (RFE: (On Windows) Get ChimeraX icon information from the build system) created by Zach Pearson
It's possible to get all of the ChimeraX binary's build information …
6:33 PM Dev2022-5-19 edited by Tom Goddard
(diff)
6:32 PM Dev2022-5-19 edited by Tom Goddard
(diff)
6:31 PM Modern ChimeraX (Technical).pdf attached to Dev2022-5-19 by Zach Pearson
Zach's presentation
6:25 PM 2022-5-19 edited by Tom Goddard
(diff)
6:23 PM 2022-5-19 edited by Tom Goddard
(diff)
5:52 PM Ticket #6843 (Toolbar button causes brief spurious window appearance) closed by Greg Couch
fixed: Fixed with alternative fix that avoid recreating the buttons when …
3:04 PM Ticket #6915 (Tried to get the position of deleted drawing "Room camera") created by rkrishnan@…
[…]
2:39 PM Ticket #6914 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by chimerax-bug-report@…
[…]
2:37 PM Ticket #6911 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
2:24 PM Ticket #1636 (Installation problems with openSuSE Leap 15.0) closed by Greg Couch
limitation: Plan to work on a flatpak version for a generic Linux version.
2:21 PM Ticket #6909 (Restore new session in old ChimeraX) closed by pett
not a bug: Now converts the TypeError into a RestoreError
2:19 PM Ticket #6389 (Toolshed list of bundle developers gives error) closed by Greg Couch
fixed: Fix on 6 April 2022.
11:01 AM Ticket #6906 (Problem running in virtual desktop environment) closed by Greg Couch
limitation: The official line is that we don't support ChimeraX on virtual …
10:52 AM Ticket #6913 (Graphics crash, macOS 10.14.6, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
10:51 AM Ticket #6908 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:49 AM Ticket #6907 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
10:31 AM Ticket #6912 (Save GLTF: index is out of bounds for axis) created by chimerax-bug-report@…
[…]
10:30 AM Ticket #6905 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: Hi Marta, Thanks for reporting this problem. I would recommend …
10:27 AM Ticket #6904 (Long atom spec crashes ChimeraX) closed by pett
duplicate: duplicate of #4842
9:00 AM Ticket #6911 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
7:38 AM Ticket #6910 (XMAS: KeyError: 'Score') created by chimerax-bug-report@…
[…]
7:08 AM Ticket #6909 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
6:02 AM Ticket #6908 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
5:10 AM Ticket #6907 (Crash using File→Open dialog on Windows and/or returning from function) created by mziemniak@…
[…]
3:39 AM Ticket #6906 (Problem running in virtual desktop environment) created by deeksha.gaikwad@…
[…]
3:22 AM Ticket #6905 (Crash showing Rapid Access at startup) created by mmmtnez@…
[…]
1:39 AM Ticket #6904 (Long atom spec crashes ChimeraX) created by chimerax-bug-report@…
[…]

May 18, 2022:

8:50 PM Ticket #6902 (Improve AlphaFold PAE plot appearance) closed by Tom Goddard
fixed: Switched default PAE plot colormap to rainbow making it easier to see …
6:52 PM Ticket #6704 (Empty "Update Bundles" dialog) closed by Greg Couch
fixed: The updates dialog is automatically triggered when there are newer …
5:46 PM Ticket #6903 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: Hi Eva, Thanks for reporting this problem. We believe it is fixed in …
5:45 PM Ticket #6903 (Crash using File→Open on Windows and/or in return statement) created by esorianop1600@…
The following bug report has been submitted: Platform: …
1:20 PM Ticket #6902 (Improve AlphaFold PAE plot appearance) created by jan.gebauer@…
Jan suggests AlphaFold PAE plots can have axis labels, chain dividing …
1:14 PM Ticket #6901 (Make AlphaFold PAE plot mouse drag log color or select command) closed by Tom Goddard
fixed: Added to tomorrow's ChimeraX daily builds, not in ChimeraX 1.4. Color …
1:12 PM Ticket #6901 (Make AlphaFold PAE plot mouse drag log color or select command) created by jan.gebauer@…
Begin forwarded message: From: "Jan Gebauer" Subject: Re[2]: …
11:48 AM Ticket #6898 (Graphics crash, macOS 12.3.1, Intel UHD Graphics 617) closed by Tom Goddard
duplicate: Same Apple graphics crash as #6897, this time reporter was using Intel …
11:42 AM Ticket #6897 (Graphics driver crash, macOS 12.3.1, Radeon RX Vega 64) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Unfortunately Intel Mac OpenGL graphics …
11:36 AM Ticket #6893 (QOpenGLFramebufferObject errors as "alphafold predict" finishes) closed by Tom Goddard
can't reproduce: These are all OpenGL errors from Qt 6.3.0 not from ChimeraX use of …
9:42 AM Ticket #6900 (Crash in ~Structure during "close session") closed by pett
can't reproduce: Would really need the input files to have any shot at reproducing this.
8:56 AM Ticket #6900 (Crash in ~Structure during "close session") created by chimerax-bug-report@…
[…]
8:55 AM Ticket #6895 (Out of disk space writing command history) closed by pett
nonchimerax
8:54 AM Ticket #6894 (Out of disk space writing command history) closed by pett
nonchimerax
6:40 AM Ticket #6899 (Crash in event loop) created by hzauzsmj@…
[…]
5:31 AM Ticket #6898 (Graphics crash, macOS 12.3.1, Intel UHD Graphics 617) created by shweta.bhatt@…
[…]
4:46 AM Ticket #6897 (Graphics driver crash, macOS 12.3.1, Radeon RX Vega 64) created by shweta.bhatt@…
[…]

May 17, 2022:

8:41 PM Ticket #6823 (RFE: crosslinks histogram - save plot, control drawing parameters) closed by Tom Goddard
fixed: Done. I added options to the "crosslinks histogram" command "bins", …
7:56 PM Dev2022-5-19 edited by Tom Goddard
(diff)
7:52 PM Ticket #6896 (Allow saving interfaces and crosslinks plots as PNG, SVG, PDF) closed by Tom Goddard
fixed: Done. Added a "Save Plot As..." context menu entry to the interfaces …
7:43 PM Ticket #6896 (Allow saving interfaces and crosslinks plots as PNG, SVG, PDF) created by p.shah.lab@…
Want to be able to save these histogram and graph plots to a file to …
6:32 PM Ticket #6895 (Out of disk space writing command history) created by chimerax-bug-report@…
[…]
6:32 PM Ticket #6894 (Out of disk space writing command history) created by chimerax-bug-report@…
[…]
5:58 PM Ticket #6874 (crossfade command stretches image when movie recording with width specified) closed by Tom Goddard
limitation: Elaine, could you document that the "movie crossfade" command should …
5:24 PM Ticket #6892 (Tape measure: shapes not aligned) closed by Tom Goddard
fixed: Fixed. User used clip mouse mode and made clip planes then used tape …
2:32 PM Ticket #6893 (QOpenGLFramebufferObject errors as "alphafold predict" finishes) created by chimerax-bug-report@…
[…]
12:44 PM Ticket #6881 (Map statistics wrong(?)) closed by Tom Goddard
not a bug: No trouble.
11:32 AM Ticket #6892 (Tape measure: shapes not aligned) created by chimerax-bug-report@…
[…]
11:23 AM Ticket #6891 (crosslinks histogtam: AttributeError: 'QMouseEvent' object has no ...) closed by Tom Goddard
fixed: Fixed in 1.4 and 1.5. QMouseEvent no longer has x() and y() methods …
11:04 AM Ticket #6891 (crosslinks histogtam: AttributeError: 'QMouseEvent' object has no ...) created by goddard@…
[…]
10:52 AM Ticket #6890 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:48 AM Ticket #6890 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
10:47 AM Ticket #6889 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:45 AM Ticket #6888 (Crash in event loop) closed by pett
can't reproduce
10:44 AM Ticket #6887 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:43 AM Ticket #6886 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:42 AM Ticket #6885 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by pett
duplicate: Hi Disha, Thanks for reporting this problem. This problem has been …
10:37 AM Ticket #6883 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:33 AM Ticket #6882 (Crash creating QWebEngineProfile at startup) closed by pett
duplicate: Hi Chonnikan, Thanks for reporting this problem. Please upgrade to …
10:27 AM Ticket #6799 (RFE: Set scale factors from displayed contours) closed by Tom Goddard
fixed: Done. The volume command scaleFactors option now accepts "fromlevels" …
9:53 AM Dev2022-5-19 created by Tom Goddard
9:52 AM 2022-5-19 created by Tom Goddard
9:51 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:29 AM Ticket #6889 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
8:08 AM Ticket #6888 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:48 AM Ticket #6887 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
6:48 AM Ticket #6886 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:32 AM Ticket #6885 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) created by disha-gajanan.hiregange@…
[…]
2:42 AM Ticket #6884 (XMAS: KeyError: 'Max. XlinkX Score') created by chimerax-bug-report@…
[…]
1:52 AM Ticket #6883 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:04 AM Ticket #6882 (Crash creating QWebEngineProfile at startup) created by kunkungking@…
[…]

May 16, 2022:

8:19 PM Ticket #6876 (Nogui save crash with labels / ensure exported graphics is up to date) closed by Tom Goddard
fixed: Fixed. I made the text_image_rgba() return a blank image when in …
7:17 PM Ticket #6881 (Map statistics wrong(?)) created by man6ny@…
[…]
6:12 PM Ticket #6880 (Crash deleting a water) closed by pett
fixed: Was douse tool creating an Atoms collection instead of a Residues …
5:51 PM Ticket #6880 (Crash deleting a water) created by pett
[…]
4:14 PM Ticket #6879 (Unlabeled distances) created by Elaine Meng
Like Chimera, allow a distance to be unlabeled.
4:12 PM Ticket #6878 (command to create generic pseudobond) created by Elaine Meng
So that people don't have to use fake unlabeled distances. Would need …
3:50 PM Ticket #6877 (support pdbx_struct_mod_residue in mmCIF files) created by Greg Couch
Originally, the equivalent of the PDB file's MODRES record was the …
3:46 PM Ticket #6872 (PAE chart: 'NoneType' object has no attribute 'residues') closed by Tom Goddard
fixed: Fixed. PAE plot opened without associated structure gave errors when …
3:36 PM Ticket #6871 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: ChimeraX raised an OpenGL graphics error. It could be a graphics …
3:29 PM Ticket #6876 (Nogui save crash with labels / ensure exported graphics is up to date) created by pett
[…] cmds.cxc
3:20 PM Ticket #6869 (Crash in event loop, possibly while saving image) closed by Tom Goddard
can't reproduce: Could be the common open/save dialog crash.
3:17 PM Ticket #6868 (glClear access violation) closed by Tom Goddard
can't reproduce: This crash looks like some multi-thread problem either caused by …
2:51 PM Ticket #6862 (Crash in event loop recording movie) closed by Tom Goddard
can't reproduce: Possible graphics driver crash.
2:49 PM Ticket #6859 (Attempt to retrieve context when no valid context) closed by Tom Goddard
duplicate: Duplicate of #6770.
2:48 PM Ticket #6857 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
2:47 PM Ticket #6856 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
2:45 PM Ticket #6854 (sym: normalize_vector() takes 1 positional argument but 3 were given) closed by Tom Goddard
fixed: Fixed in 1.4. The vector_rotation() routine was wrong in some corner …
2:25 PM Ticket #6853 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
2:24 PM Ticket #6852 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
1:45 PM Ticket #6875 (Make sym command work on maps) created by Tom Goddard
The sym command with specified symmetry group only works on atomic …
1:16 PM Ticket #6850 (Hang during "rainbow structures"?) closed by Tom Goddard
duplicate: I don't think ChimeraX hung. I suspect the user was simply trying to …
1:14 PM Ticket #6849 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: Looks like ChimeraX 1.3 gave these OpenGL errors on startup. Does it …
1:08 PM Ticket #6847 (Crash in contour_surface()) closed by Tom Goddard
can't reproduce: Have seen ChimeraX surface calculation crash a few times in Windows …
12:43 PM Ticket #6874 (crossfade command stretches image when movie recording with width specified) created by omid.hajighassemi@…
Begin forwarded message: From: Omid Haji-Ghassemi via ChimeraX-users …
12:27 PM Ticket #6836 (Crash running AlphaFold prediction) closed by Tom Goddard
can't reproduce: Third report in 2 days by same user, running AlphaFold prediction on …
12:25 PM Ticket #6835 (Crash running AlphaFold prediction) closed by Tom Goddard
can't reproduce: No clues. Seems likely to be a Qt crash probably connected with the …
12:24 PM Ticket #6834 (Crash in event loop after AlphaFold prediction) closed by Tom Goddard
can't reproduce: No clues. Most likely a Qt bug since it does not appear to be in any …
12:19 PM Ticket #6827 (RFE: Warn user about Wayland on startup) closed by Tom Goddard
duplicate
11:11 AM Ticket #6820 (Crash in Qt event loop running multiple AlphaFold predictions) closed by Tom Goddard
can't reproduce
11:04 AM Ticket #6873 (Crash creating AtomSearchTree) closed by pett
duplicate
10:48 AM Ticket #6867 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:44 AM Ticket #6866 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:41 AM Ticket #6796 (glClear: invalid operation) closed by Tom Goddard
can't reproduce: Appears a PDB file was clicked in the file history and an OpenGL error …
10:34 AM Ticket #6795 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Unfortunately Apple's drivers on Intel …
10:31 AM Ticket #6863 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:27 AM Ticket #6861 (Color Key: wrapped C/C++ object of type QDockWidget has been deleted) closed by pett
can't reproduce
10:25 AM Ticket #6860 (Attempt to retrieve context when no valid context) closed by pett
duplicate
10:19 AM Ticket #6858 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.3
9:26 AM Ticket #6855 (Crash in event loop) closed by pett
can't reproduce
9:18 AM Ticket #6851 (Crash during/after Rotamers) closed by pett
can't reproduce
9:05 AM Ticket #6848 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:38 AM Ticket #6873 (Crash creating AtomSearchTree) created by chimerax-bug-report@…
[…]
7:45 AM Ticket #6872 (PAE chart: 'NoneType' object has no attribute 'residues') created by chimerax-bug-report@…
[…]
6:06 AM Ticket #6871 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
4:02 AM Ticket #6870 (Premature tool-added trigger) created by Tristan Croll
[…]
3:17 AM Ticket #6869 (Crash in event loop, possibly while saving image) created by chimerax-bug-report@…
[…]
2:34 AM Ticket #6868 (glClear access violation) created by trevor.sewell@…
[…]

May 15, 2022:

9:39 PM Ticket #6867 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
9:39 PM Ticket #6866 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:02 PM Ticket #6864 (ISOLDE: validate_scale_and_color_rotamers: unordered_map::at: key not found) created by maru.jaimegarza@…
[…]
2:59 PM Ticket #6863 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
2:36 PM Ticket #6862 (Crash in event loop recording movie) created by chimerax-bug-report@…
[…]

May 14, 2022:

11:13 AM Ticket #6861 (Color Key: wrapped C/C++ object of type QDockWidget has been deleted) created by chimerax-bug-report@…
[…]
8:20 AM Ticket #6860 (Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
8:18 AM Ticket #6859 (Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]

May 13, 2022:

6:23 PM Ticket #5807 (Session save crashes when it registers all aliased commands) closed by Greg Couch
fixed: Limit search for user aliases to completely registered commands (ie., …
4:53 PM Ticket #6858 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
4:06 PM Ticket #6857 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by chimerax-bug-report@…
[…]
3:06 PM Ticket #6856 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by chimerax-bug-report@…
[…]
1:36 PM Ticket #6855 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:20 AM Ticket #6854 (sym: normalize_vector() takes 1 positional argument but 3 were given) created by chimerax-bug-report@…
[…]
9:41 AM Ticket #6853 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by chimerax-bug-report@…
[…]
9:38 AM Ticket #6852 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by chimerax-bug-report@…
[…]
6:44 AM Ticket #6851 (Crash during/after Rotamers) created by chimerax-bug-report@…
[…]
3:31 AM Ticket #6850 (Hang during "rainbow structures"?) created by chimerax-bug-report@…
[…]
3:14 AM Ticket #6849 (glClear: invalid framebuffer operation) created by isha.raj@…
[…]
3:03 AM Ticket #6848 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:48 AM Ticket #6847 (Crash in contour_surface()) created by chimerax-bug-report@…
[…]

May 12, 2022:

11:58 PM Ticket #6770 (Gnome: OpenGL.error.Error: Attempt to retrieve context when no valid ...) closed by Greg Couch
fixed: Put setting QT_QPA_PLATFORM to xcb, when the XDG_SESSION_TYPE is …
5:07 PM Ticket #6846 (Crash removing dock widget) closed by pett
can't reproduce: Was only using 3.5GB
4:25 PM Ticket #6842 (Crash removing dock widget) closed by pett
can't reproduce: Was using 40GB at the time.
3:42 PM Ticket #6841 (write_gltf: No such file or directory) closed by pett
can't reproduce
2:28 PM Ticket #6839 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
2:27 PM Ticket #6846 (Crash removing dock widget) created by chimerax-bug-report@…
[…]
2:25 PM Ticket #6838 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
2:04 PM NTTData edited by Elaine Meng
(diff)
2:02 PM NTTData edited by Elaine Meng
(diff)
2:00 PM Ticket #6845 (Adjust VR controller button layout for different controllers) created by phil.cruz@…
To paraphrase Phil: we like that the mapping of buttons to the cones …
1:28 PM NTTData edited by Elaine Meng
(diff)
11:35 AM Ticket #6844 (Flip peptide bond: wrapped C/C++ object of type QTableWidget has been ...) created by shuman@…
[…]
11:15 AM Ticket #6723 (Drop support for CentOS 7, Ubuntu 16 and 18) closed by Greg Couch
fixed: Limited release candidate builds to Qt supported versions.
11:09 AM Ticket #6843 (Toolbar button causes brief spurious window appearance) created by Tristan Croll
[…] 2022-05-12 19-05-21.mkv
10:25 AM Ticket #6833 (Crash in event loop) closed by pett
can't reproduce
10:22 AM Ticket #6832 (Crash in Ring.aromatic) closed by pett
duplicate
10:21 AM Ticket #6842 (Crash removing dock widget) created by chimerax-bug-report@…
[…]
10:20 AM Ticket #6831 (Crash during drag and drop: backingScaleFactor > 0.f) closed by pett
can't reproduce: Qt5
8:17 AM Ticket #6841 (write_gltf: No such file or directory) created by jc3534@…
[…]
6:18 AM Ticket #6840 (Crash using File→Open dialog on Windows and/or returning from function) created by wegner@…
[…]
5:20 AM Ticket #6839 (Crash using File→Open dialog on Windows and/or returning from function) created by wegner@…
[…]
5:17 AM Ticket #6838 (Crash using File→Open dialog on Windows and/or returning from function) created by wegner@…
[…]
3:51 AM Ticket #6837 (Have undocked tools forward keystrokes to command line) created by Tristan Croll
[…]
3:49 AM Ticket #6836 (Crash running AlphaFold prediction) created by chimerax-bug-report@…
[…]
3:48 AM Ticket #6835 (Crash running AlphaFold prediction) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.