Crash in Qt event loop running multiple AlphaFold predictions

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.4rc202205060510 (2022-05-06 05:10:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Thread 0x00005544 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004de0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000052e4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005248 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000045ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001f20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00007234 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00006d94 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002d6c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005b6c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000644 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000079c8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00007140 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001d7c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00006b2c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004de8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000276c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005168 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005dac (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000041d8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000008d4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001c30 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003c9c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000045f4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005874 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005e5c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000251c (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001070 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005674 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001b38 (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\threading.py", line 930 in _bootstrap

Current thread 0x00001bbc (most recent call first):
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.4rc202205060510\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.4rc202205060510 (2022-05-06)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> DDHD2

Unknown command: DDHD2  

> ATGL

Unknown command: ATGL  

> 7p4z

Unknown command: 7p4z  

> open 7p4z

Summary of feedback from opening 7p4z fetched from pdb  
---  
notes | Fetching compressed mmCIF 7p4z from
http://files.rcsb.org/download/7p4z.cif  
Fetching CCD NAG from http://ligand-expo.rcsb.org/reports/N/NAG/NAG.cif  
  
7p4z title:  
Crystal structure of avidin from hen egg white in space group C2 [more
info...]  
  
Chain information for 7p4z #1  
---  
Chain | Description | UniProt  
A B | Avidin | AVID_CHICK  
  
Non-standard residues in 7p4z #1  
---  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  
7p4z mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
  

> open ATGL

'ATGL' has no suffix  

> open 6U7M

Summary of feedback from opening 6U7M fetched from pdb  
---  
note | Fetching compressed mmCIF 6u7m from
http://files.rcsb.org/download/6u7m.cif  
  
6u7m title:  
Cryo-EM Structure of Helical Lipoprotein Lipase [more info...]  
  
Chain information for 6u7m #2  
---  
Chain | Description | UniProt  
A B C D E F G H I J K L M N O P Q R S T U a b c d e f g h i | Lipoprotein
lipase | LIPL_BOVIN  
  

> hide #!1 models

> select add #2

99420 atoms, 102210 bonds, 30 pseudobonds, 12510 residues, 2 models selected  

> select subtract #2

Nothing selected  

> select add #2

99420 atoms, 102210 bonds, 30 pseudobonds, 12510 residues, 2 models selected  

> select subtract #2

Nothing selected  

> view clip false

> sym #1-2

7p4z mmCIF Assemblies  
---  
1| author_and_software_defined_assembly| 2 copies of chains A,B  
  
6u7m mmCIF Assemblies  
---  
1| author_defined_assembly| 1 copy of chains A-U,a-i  
  

> log metadata #1-2

> log chains #1-2

Chain information for 7p4z #1  
---  
Chain | Description | UniProt  
A B | Avidin | AVID_CHICK  
  
Chain information for 6u7m #2  
---  
Chain | Description | UniProt  
A B C D E F G H I J K L M N O P Q R S T U a b c d e f g h i | Lipoprotein
lipase | LIPL_BOVIN  
  

> sym #1-2

7p4z mmCIF Assemblies  
---  
1| author_and_software_defined_assembly| 2 copies of chains A,B  
  
6u7m mmCIF Assemblies  
---  
1| author_defined_assembly| 1 copy of chains A-U,a-i  
  

> log metadata #1-2

> log chains #1-2

Chain information for 7p4z #1  
---  
Chain | Description | UniProt  
A B | Avidin | AVID_CHICK  
  
Chain information for 6u7m #2  
---  
Chain | Description | UniProt  
A B C D E F G H I J K L M N O P Q R S T U a b c d e f g h i | Lipoprotein
lipase | LIPL_BOVIN  
  

> show #!1 models

> select add #1

1870 atoms, 1895 bonds, 2 pseudobonds, 247 residues, 2 models selected  

> select add #2

101290 atoms, 104105 bonds, 32 pseudobonds, 12757 residues, 4 models selected  

> close

> ui tool show AlphaFold

Fetching O94830 UniProt info from https://www.uniprot.org/uniprot/O94830.xml  

> alphafold match O94830

Fetching AlphaFold database settings from
https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database.json  
Fetching compressed AlphaFold O94830 from
https://alphafold.ebi.ac.uk/files/AF-O94830-F1-model_v2.cif  
1 AlphaFold model found using UniProt identifier: O94830 (UniProt O94830)  
Opened 1 AlphaFold model  

> alphafold search O94830

Webservices job id: 0C96LQOINS1EJKDY  

> alphafold predict O94830

Running AlphaFold prediction  

> alphafold predict O94830

Running AlphaFold prediction  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4rc202205060510 (2022-05-06)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 30.0.101.1340
OpenGL renderer: Intel(R) UHD Graphics 630
OpenGL vendor: Intel

Python: 3.9.11
Locale: en_US.cp1252
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: windows

Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Enterprise (Build 19044)
Memory: 34,195,324,928
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4rc202205060510
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.2
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.8
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pywin32: 303
    pyzmq: 22.3.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1