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#6903 closed defect (can't reproduce)

Crash using File→Open on Windows and/or in return statement

Reported by:	esorianop1600@…	Owned by:	Eric Pettersen
Priority:	moderate	Milestone:
Component:	Platform	Version:
Keywords:		Cc:	Tom Goddard
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform: Windows-10-10.0.19044
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00000fdc (most recent call first):

, line Windows fatal exception: code 0x576 in _h8001010e

aWindows fatal exception: code 0xndle8001010e

_resWindows fatal exception: code 0x8001010eults

:\PWindows fatal exception: code 0x8001010e

roWindows fatal exception: code 0xgr8001010e

am Windows fatal exception: code 0x8001010eFile

s\Windows fatal exception: code 0xCh8001010e

imerWindows fatal exception: code 0xaX 8001010e

1.Windows fatal exception: 3code 0x\8001010eb

Windows fatal exception: code 0xin\lib\8001010e

thWindows fatal exception: rcode 0xe8001010ea

diWindows fatal exception: ncode 0xg8001010e.

pyWindows fatal exception: "code 0x, line 8001010e910

in rWindows fatal exception: ucode 0xn8001010e

PrWindows fatal exception: ocode 0xg8001010er

amWindows fatal exception: code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aXWindows fatal exception: code 0x18001010e.

3\bin\lib\threading.py", line 973 in _bootstrap_inner

Thread 0x00005f64 (most recent call first):

XWindows fatal exception: code 0x18001010e.

3\Windows fatal exception: bcode 0xi8001010en

\lWindows fatal exception: icode 0xb8001010e\

thWindows fatal exception: rcode 0xe8001010ea

diWindows fatal exception: ncode 0xg8001010e.

pyWindows fatal exception: "code 0x, line 8001010e930

in _Windows fatal exception: bcode 0xo8001010eo

tsWindows fatal exception: tcode 0xr8001010ea

p
Windows fatal exception:
code 0xThread 0x8001010e00001594

(most recent call first):
Windows fatal exception: File code 0x"8001010eC

:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait

rWindows fatal exception: kcode 0xe8001010er

s
Windows fatal exception: File code 0x"8001010eC

:\Windows fatal exception: Pcode 0xr8001010eo

grWindows fatal exception: acode 0xm8001010e

FiWindows fatal exception: lcode 0xe8001010es

\CWindows fatal exception: hcode 0xi8001010em

Windows fatal exception: ecode 0xr8001010ea

X Windows fatal exception: 1code 0x.8001010e3

\bWindows fatal exception: icode 0xn8001010e\

liWindows fatal exception: bcode 0x\8001010et

hreading.py", line 910 in run

Thread 0x0000012c (most recent call first):

eWindows fatal exception: acode 0xd8001010ei

ngWindows fatal exception: .code 0xp8001010ey

", line Windows fatal exception: 973code 0x in 8001010e_

boWindows fatal exception: ocode 0xt8001010es

trWindows fatal exception: acode 0xp8001010e_

inWindows fatal exception: ncode 0xe8001010er

\PWindows fatal exception: rcode 0xo8001010eg

raWindows fatal exception: code 0xm Fi8001010e

leWindows fatal exception: scode 0x\8001010eC

himeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000413c (most recent call first):

_Windows fatal exception: bcode 0xo8001010eo

tsWindows fatal exception: tcode 0xr8001010ea

p
Windows fatal exception:
code 0xThread 0x8001010e0000427c

(most recent call first):

\PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e

FiWindows fatal exception: lcode 0xe8001010es

\CWindows fatal exception: hcode 0xi8001010em

erWindows fatal exception: acode 0xX8001010e

1.Windows fatal exception: 3code 0x\8001010eb

in\lib\multiprocessing\pool.py", line 114 in worker

Thread 0x000020e8 (most recent call first):

Thread 0xWindows fatal exception: 000008a0code 0x (most recent call first):
8001010e File

"CWindows fatal exception: :code 0x\8001010eP

roWindows fatal exception: gcode 0xr8001010ea

m Windows fatal exception: Fcode 0xi8001010el

esWindows fatal exception: \code 0xC8001010eh

iWindows fatal exception: mcode 0xe8001010er

aXWindows fatal exception: code 0x18001010e.

3\Windows fatal exception: bcode 0xi8001010en

\lWindows fatal exception: icode 0xb8001010e\

muWindows fatal exception: lcode 0xt8001010ei

processing\pool.py", line 114 in worker

Thread 0x00002d34 (most recent call first):

Thread 0x00004344 (most recent call first):

Thread 0x0000295c (most recent call first):

Thread 0x0000307c (most recent call first):

Thread 0x00005d40 (most recent call first):

Thread 0x0000324c (most recent call first):

lWindows fatal exception: icode 0xb8001010e\

thWindows fatal exception: rcode 0xe8001010ea

diWindows fatal exception: ncode 0xg8001010e.

pyWindows fatal exception: "code 0x, line 8001010e910

in rWindows fatal exception: ucode 0xn8001010e

PrWindows fatal exception: ocode 0xg8001010er

amWindows fatal exception: code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner

Thread 0x0000357c (most recent call first):

Thread 0x00000ce4 (most recent call first):

Thread 0x000020f4 (most recent call first):

Thread 0x0000481c (most recent call first):

Thread 0x00005794 (most recent call first):

Thread 0x000029c0 (most recent call first):

Windows fatal exception: code 0x8001010e

Thread 0x00000fdc (most recent call first):

s\Windows fatal exception: code 0xChime8001010e

raWindows fatal exception: code 0x8001010e

XWindows fatal exception: code 0x8001010e

Windows fatal exception: 1.code 0x8001010e

3\Windows fatal exception: code 0x8001010ebi

Windows fatal exception: code 0x8001010e

n\lib\threading.py", line 973 in _bootstrap_inner

Thread 0x00005f64 (most recent call first):

Thread 0x00001594 (most recent call first):

Thread 0x0000012c (most recent call first):

Thread 0x0000413c (most recent call first):

g.Windows fatal exception: pcode 0xy8001010e"

, line 910 in ruWindows fatal exception: code 0x8001010e

n
Windows fatal exception: File code 0x"8001010eC

:\Windows fatal exception: Pcode 0xr8001010eo

gWindows fatal exception: rcode 0xa8001010em

FWindows fatal exception: icode 0xl8001010ee

s\Windows fatal exception: Ccode 0xh8001010ei

meWindows fatal exception: rcode 0xa8001010eX

1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\8001010el

ib\threading.py", line 973 in _bootstrap_inner

Thread 0x0000427c (most recent call first):

bWindows fatal exception: icode 0xn8001010e\

liWindows fatal exception: bcode 0x\8001010em

ulWindows fatal exception: tcode 0xi8001010ep

roWindows fatal exception: ccode 0xe8001010es

siWindows fatal exception: ncode 0xg8001010e\

poWindows fatal exception: ocode 0xl8001010e.

pyWindows fatal exception: "code 0x, line 8001010e114

in wWindows fatal exception: ocode 0xr8001010ek

erWindows fatal exception:
code 0x File "C8001010e

:Windows fatal exception: \code 0xP8001010er

ogram Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run

Thread 0x000020e8 (most recent call first):

Thread 0x000008a0 (most recent call first):

iWindows fatal exception: lcode 0xe8001010es

\CWindows fatal exception: hcode 0xi8001010em

erWindows fatal exception: acode 0xX8001010e

1.Windows fatal exception: 3code 0x\8001010eb

inWindows fatal exception: \code 0xl8001010ei

b\Windows fatal exception: tcode 0xh8001010er

eaWindows fatal exception: dcode 0xi8001010en

g.Windows fatal exception: pcode 0xy8001010e"

, line 973Windows fatal exception: in code 0x_8001010eb

ooWindows fatal exception: tcode 0xs8001010et

rap_inner

PWindows fatal exception: rcode 0xo8001010eg

raWindows fatal exception: mcode 0x 8001010eF

ilWindows fatal exception: ecode 0xs8001010e\

ChWindows fatal exception: icode 0xm8001010ee

raWindows fatal exception: Xcode 0x 8001010e1

.3Windows fatal exception: \code 0xb8001010ei

n\Windows fatal exception: lcode 0xi8001010eb

\tWindows fatal exception: hcode 0xr8001010ee

adWindows fatal exception: icode 0xn8001010eg

.pWindows fatal exception: ycode 0x"8001010e, line

930 in _bootstrap

Thread 0x00002d34 (most recent call first):

FWindows fatal exception: icode 0xl8001010ee

s\Windows fatal exception: Ccode 0xh8001010ei

meWindows fatal exception: rcode 0xa8001010eX

1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\8001010el

ibWindows fatal exception: \code 0xt8001010eh

reWindows fatal exception: acode 0xd8001010ei

ngWindows fatal exception: .code 0xp8001010ey

", line Windows fatal exception: 973code 0x in 8001010e_

boWindows fatal exception: ocode 0xt8001010es

trap_inner

Thread 0x00004344 (most recent call first):

Thread 0x0000295c (most recent call first):

\Windows fatal exception: Pcode 0xr8001010eo

grWindows fatal exception: acode 0xm8001010e

FiWindows fatal exception: lcode 0xe8001010es

\CWindows fatal exception: hcode 0xi8001010em

erWindows fatal exception: code 0x8001010e

aWindows fatal exception: Xcode 0x 8001010e1

.3Windows fatal exception: code 0x8001010e

\bWindows fatal exception: code 0x8001010e

inWindows fatal exception: \code 0xl8001010ei

b\Windows fatal exception: tcode 0xh8001010er

eading.py", line 910 in run

Thread 0x0000307c (most recent call first):

keWindows fatal exception: code 0xr

"Windows fatal exception: C:\Pcode 0x8001010e

rWindows fatal exception: ogcode 0x8001010e

raWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0x8001010e

Windows fatal exception: es\Chcode 0x8001010eime

rWindows fatal exception: acode 0xX8001010e

1Windows fatal exception: .code 0x38001010e\

bWindows fatal exception: in\libcode 0x8001010e

\tWindows fatal exception: hcode 0xr8001010e

eading.py", line 910 in run

Thread 0x00005d40 (most recent call first):

eWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aXWindows fatal exception: code 0x18001010e.

3\Windows fatal exception: bcode 0xi8001010en

\lWindows fatal exception: icode 0xb8001010e\

thWindows fatal exception: rcode 0xe8001010ea

diWindows fatal exception: ncode 0xg8001010e.

pyWindows fatal exception: "code 0x, line 8001010e930

in _Windows fatal exception: bcode 0xo8001010eo

tsWindows fatal exception: tcode 0xr8001010ea

Thread 0x0000324c (most recent call first):

Windows fatal exception: Fcode 0xi8001010el

esWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ecode 0xr8001010ea

X Windows fatal exception: 1code 0x.8001010e3

\bWindows fatal exception: icode 0xn8001010e\

liWindows fatal exception: bcode 0x\8001010et

hrWindows fatal exception: ecode 0xa8001010ed

inWindows fatal exception: gcode 0x.8001010ep

yWindows fatal exception: "code 0x, line 8001010e930

in Windows fatal exception: _code 0xb8001010eo

otstrap

[deleted a bunch of this]

Thread 0x0000413c (most recent call first):

Thread 0x0000427c (most recent call first):

Thread 0x000020e8 (most recent call first):

Thread 0x000008a0 (most recent call first):

Thread 0x00002d34 (most recent call first):

Thread 0x00004344 (most recent call first):

Thread 0x0000295c (most recent call first):

Thread 0x0000307c (most recent call first):

Thread 0x00005d40 (most recent call first):

Thread 0x0000324c (most recent call first):

Thread 0x0000357c (most recent call first):

Thread 0x00000ce4 (most recent call first):

Thread 0x000020f4 (most recent call first):

Thread 0x0000481c (most recent call first):

Thread 0x00005794 (most recent call first):

Thread 0x000029c0 (most recent call first):

Windows fatal exception: code 0x8001010e

Thread 0x00000fdc (most recent call first):

Thread 0x00005f64 (most recent call first):

Thread 0x00001594 (most recent call first):

Thread 0x0000012c (most recent call first):

Thread 0x0000413c (most recent call first):

Thread 0x0000427c (most recent call first):

Thread 0x000020e8 (most recent call first):

Thread 0x000008a0 (most recent call first):

Thread 0x00002d34 (most recent call first):

Thread 0x00004344 (most recent call first):

Thread 0x0000295c (most recent call first):

Thread 0x0000307c (most recent call first):

Thread 0x00005d40 (most recent call first):

Thread 0x0000324c (most recent call first):

Thread 0x0000357c (most recent call first):

Thread 0x00000ce4 (most recent call first):

Thread 0x000020f4 (most recent call first):

Thread 0x0000481c (most recent call first):

Thread 0x00005794 (most recent call first):

Thread 0x000029c0 (most recent call first):

Windows fatal exception: code 0x8001010e

Thread 0x00000fdc (most recent call first):

Thread 0x00005f64 (most recent call first):

Thread 0x00001594 (most recent call first):

Thread 0x0000012c (most recent call first):

Thread 0x0000413c (most recent call first):

Thread 0x0000427c (most recent call first):

Thread 0x000020e8 (most recent call first):

Thread 0x000008a0 (most recent call first):

Thread 0x00002d34 (most recent call first):

Thread 0x00004344 (most recent call first):

Thread 0x0000295c (most recent call first):

Thread 0x0000307c (most recent call first):

Thread 0x00005d40 (most recent call first):

Thread 0x0000324c (most recent call first):

Thread 0x0000357c (most recent call first):

Thread 0x00000ce4 (most recent call first):

Thread 0x000020f4 (most recent call first):

Thread 0x0000481c (most recent call first):

Thread 0x00005794 (most recent call first):

Thread 0x000029c0 (most recent call first):

Windows fatal exception: code 0x8001010e

Thread 0x00000fdc (most recent call first):

Thread 0x00005f64 (most recent call first):

Thread 0x00001594 (most recent call first):

Thread 0x0000012c (most recent call first):

Thread 0x0000413c (most recent call first):

Thread 0x0000427c (most recent call first):

Thread 0x000020e8 (most recent call first):

Thread 0x000008a0 (most recent call first):

Thread 0x00002d34 (most recent call first):

Thread 0x00004344 (most recent call first):

Thread 0x0000295c (most recent call first):

Thread 0x0000307c (most recent call first):

Thread 0x00005d40 (most recent call first):

Thread 0x0000324c (most recent call first):

Thread 0x0000357c (most recent call first):

Thread 0x00000ce4 (most recent call first):

Thread 0x000020f4 (most recent call first):

Thread 0x0000481c (most recent call first):

Thread 0x00005794 (most recent call first):

Thread 0x000029c0 (most recent call first):

Windows fatal exception: code 0x8001010e

Thread 0x00000fdc (most recent call first):

Thread 0x00005f64 (most recent call first):

Thread 0x00001594 (most recent call first):

Thread 0x0000012c (most recent call first):

Thread 0x0000413c (most recent call first):

Thread 0x0000427c (most recent call first):

Thread 0x000020e8 (most recent call first):

Thread 0x000008a0 (most recent call first):

Thread 0x00002d34 (most recent call first):

Thread 0x00004344 (most recent call first):

Thread 0x0000295c (most recent call first):

Thread 0x0000307c (most recent call first):

Thread 0x00005d40 (most recent call first):

Thread 0x0000324c (most recent call first):

Thread 0x0000357c (most recent call first):

Thread 0x00000ce4 (most recent call first):

Thread 0x000020f4 (most recent call first):

Thread 0x0000481c (most recent call first):

Thread 0x00005794 (most recent call first):

Thread 0x000029c0 (most recent call first):

Windows fatal exception: access violation

Windows fatal exception: code 0x8001010e

Log before crash start

ui tool show AlphaFold

alphafold match
KDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN

No AlphaFold model with similar sequence for 1 sequences

Opened 0 AlphaFold model

alphafold predict
KDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN

Running AlphaFold prediction
Chain information for best_model.pdb #1
---
Chain | Description
A | No description available

AlphaFold prediction finished
Results in C:\Users\ps2ev/Downloads\ChimeraX\AlphaFold\prediction_2

log metadata #1

The model has no metadata

log chains #1

Chain information for best_model.pdb #1
---
Chain | Description
A | No description available

sequence chain #1/A

Alignment identifier is 1/A

select /A:299

15 atoms, 14 bonds, 1 residue, 1 model selected

select /A:72-299

3609 atoms, 3625 bonds, 228 residues, 1 model selected

select /A:327-328

25 atoms, 24 bonds, 2 residues, 1 model selected

select /A:327-328

25 atoms, 24 bonds, 2 residues, 1 model selected

select
/A:2-22,26-35,38-61,65-74,77-100,106-113,118-139,143-150,154-171,174-187,194-200,206-231,233-241,281-306,329-351,391-393,497-515,522-525,536-556,561-566,601-623

5298 atoms, 5297 bonds, 326 residues, 1 model selected

help help:quickstart

Log before crash end

OpenGL version: 3.3.0 NVIDIA 512.59
OpenGL renderer: NVIDIA GeForce GTX 1660 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: B450M DS3H
OS: Microsoft Windows 10 Pro (Build 19044)
Memory: 34,305,421,312
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 3800X 8-Core Processor
OSLanguage: es-MX
Locale: ('es_MX', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:

Change History (1)

comment:1 by Eric Pettersen, 3 years ago

Resolution:	→ can't reproduce
Status:	assigned → closed

Hi Eva,

--Eric

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