![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#6913 closed defect (nonchimerax)
Graphics crash, macOS 10.14.6, Intel Iris Plus Graphics 645
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.14.6-x86_64-i386-64bit
ChimeraX Version: 1.4rc202205140117 (2022-05-14 01:17:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000010f11c5c0 (most recent call first):
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 235 in swap_buffers
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 496 in swap_buffers
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 179 in draw
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [8587]
Path: /Applications/ChimeraX-1.4-rc2022.05.14.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [8587]
User ID: 501
Date/Time: 2022-05-19 10:50:48.675 -0700
OS Version: Mac OS X 10.14.6 (18G95)
Report Version: 12
Bridge OS Version: 3.6 (16P6571)
Anonymous UUID: ABC769A2-BDC6-390C-AA1E-01C9D83645D0
Sleep/Wake UUID: 415275C0-1D31-4DBD-8ECB-1E03FC038888
Time Awake Since Boot: 44000 seconds
Time Since Wake: 890 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff57ed22c6 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff57f8dbf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff57defd8a raise + 26
3 libsystem_platform.dylib 0x00007fff57f82b5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff57e3c6a6 abort + 127
6 libGPUSupportMercury.dylib 0x00007fff46ea9240 gpusGenerateCrashLog + 166
7 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff25196578 gpusKillClientExt + 9
8 libGPUSupportMercury.dylib 0x00007fff46eaa730 gpusSubmitDataBuffers + 490
9 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff245efea8 IntelCommandBuffer::getNew(GLDContextRec*) + 48
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff245efcba intelSubmitCommands + 171
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff247406d6 gldPresentFramebufferData + 120
12 GLEngine 0x00007fff35ac3611 glSwap_Exec + 97
13 com.apple.opengl 0x00007fff35aa574f CGLFlushDrawable + 59
14 com.apple.AppKit 0x00007fff297f5968 -[NSOpenGLContext flushBuffer] + 27
15 libqcocoa.dylib 0x000000012b139313 0x12b0bb000 + 516883
16 QtGui 0x000000011e9475c4 QOpenGLContext::swapBuffers(QSurface*) + 212
17 QtGui.abi3.so 0x000000011ef1a44f meth_QOpenGLContext_swapBuffers(_object*, _object*) + 95
18 org.python.python 0x000000010d31271d cfunction_call + 125
19 org.python.python 0x000000010d2d35b7 _PyObject_MakeTpCall + 359
20 org.python.python 0x000000010d3abe9c call_function + 876
21 org.python.python 0x000000010d3a92a2 _PyEval_EvalFrameDefault + 25554
22 org.python.python 0x000000010d3acb03 _PyEval_EvalCode + 2611
23 org.python.python 0x000000010d2d3cb1 _PyFunction_Vectorcall + 289
24 org.python.python 0x000000010d3abe0c call_function + 732
25 org.python.python 0x000000010d3a927e _PyEval_EvalFrameDefault + 25518
26 org.python.python 0x000000010d2d3d28 function_code_fastcall + 104
27 org.python.python 0x000000010d3abe0c call_function + 732
28 org.python.python 0x000000010d3a927e _PyEval_EvalFrameDefault + 25518
29 org.python.python 0x000000010d3acb03 _PyEval_EvalCode + 2611
30 org.python.python 0x000000010d2d3cb1 _PyFunction_Vectorcall + 289
31 org.python.python 0x000000010d2d5d6a method_vectorcall + 202
32 org.python.python 0x000000010d3abe0c call_function + 732
33 org.python.python 0x000000010d3a93e8 _PyEval_EvalFrameDefault + 25880
34 org.python.python 0x000000010d2d3d28 function_code_fastcall + 104
35 org.python.python 0x000000010d3abe0c call_function + 732
36 org.python.python 0x000000010d3a927e _PyEval_EvalFrameDefault + 25518
37 org.python.python 0x000000010d2d3d28 function_code_fastcall + 104
38 org.python.python 0x000000010d2d5db2 method_vectorcall + 274
39 QtCore.abi3.so 0x000000011b710607 PyQtSlot::call(_object*, _object*) const + 39
40 QtCore.abi3.so 0x000000011b710516 PyQtSlot::invoke(void**, _object*, void*, bool) const + 358
41 QtCore.abi3.so 0x000000011b711445 PyQtSlotProxy::unislot(void**) + 85
42 QtCore.abi3.so 0x000000011b7113ba PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
43 QtCore 0x000000011ba229e7 0x11b966000 + 772583
44 QtCore 0x000000011ba374d7 QTimer::timerEvent(QTimerEvent*) + 199
45 QtCore.abi3.so 0x000000011b5ffbf9 sipQTimer::timerEvent(QTimerEvent*) + 121
46 QtCore 0x000000011ba1abad QObject::event(QEvent*) + 109
47 QtCore.abi3.so 0x000000011b5ffa7a sipQTimer::event(QEvent*) + 186
48 QtWidgets 0x000000011dfd4067 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
49 QtWidgets 0x000000011dfd5023 QApplication::notify(QObject*, QEvent*) + 499
50 QtWidgets.abi3.so 0x000000011daf6829 sipQApplication::notify(QObject*, QEvent*) + 233
51 QtCore 0x000000011b9d1dca QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
52 QtCore 0x000000011bb5da01 QTimerInfoList::activateTimers() + 961
53 libqcocoa.dylib 0x000000012b0d3885 0x12b0bb000 + 100485
54 com.apple.CoreFoundation 0x00007fff2be5f683 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
55 com.apple.CoreFoundation 0x00007fff2be5f629 __CFRunLoopDoSource0 + 108
56 com.apple.CoreFoundation 0x00007fff2be42feb __CFRunLoopDoSources0 + 195
57 com.apple.CoreFoundation 0x00007fff2be425b5 __CFRunLoopRun + 1189
58 com.apple.CoreFoundation 0x00007fff2be41ebe CFRunLoopRunSpecific + 455
59 com.apple.HIToolbox 0x00007fff2b0a11ab RunCurrentEventLoopInMode + 292
60 com.apple.HIToolbox 0x00007fff2b0a0ee5 ReceiveNextEventCommon + 603
61 com.apple.HIToolbox 0x00007fff2b0a0c76 _BlockUntilNextEventMatchingListInModeWithFilter + 64
62 com.apple.AppKit 0x00007fff2943979d _DPSNextEvent + 1135
63 com.apple.AppKit 0x00007fff2943848b -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361
64 com.apple.AppKit 0x00007fff294325a8 -[NSApplication run] + 699
65 libqcocoa.dylib 0x000000012b0d448c 0x12b0bb000 + 103564
66 QtCore 0x000000011b9db516 QEventLoop::exec(QFlags) + 486
67 QtCore 0x000000011b9d23e5 QCoreApplication::exec() + 133
68 QtWidgets.abi3.so 0x000000011dbe390a meth_QApplication_exec(_object*, _object*) + 90
69 org.python.python 0x000000010d31271d cfunction_call + 125
70 org.python.python 0x000000010d2d35b7 _PyObject_MakeTpCall + 359
71 org.python.python 0x000000010d3abe9c call_function + 876
72 org.python.python 0x000000010d3a92a2 _PyEval_EvalFrameDefault + 25554
73 org.python.python 0x000000010d2d3d28 function_code_fastcall + 104
74 org.python.python 0x000000010d2d5d6a method_vectorcall + 202
75 org.python.python 0x000000010d3abe0c call_function + 732
76 org.python.python 0x000000010d3a92a2 _PyEval_EvalFrameDefault + 25554
77 org.python.python 0x000000010d3acb03 _PyEval_EvalCode + 2611
78 org.python.python 0x000000010d2d3cb1 _PyFunction_Vectorcall + 289
79 org.python.python 0x000000010d3abe0c call_function + 732
80 org.python.python 0x000000010d3a934b _PyEval_EvalFrameDefault + 25723
81 org.python.python 0x000000010d3acb03 _PyEval_EvalCode + 2611
82 org.python.python 0x000000010d3a2dab PyEval_EvalCode + 139
83 org.python.python 0x000000010d39fc12 builtin_exec + 626
84 org.python.python 0x000000010d312023 cfunction_vectorcall_FASTCALL + 195
85 org.python.python 0x000000010d3abe0c call_function + 732
86 org.python.python 0x000000010d3a934b _PyEval_EvalFrameDefault + 25723
87 org.python.python 0x000000010d3acb03 _PyEval_EvalCode + 2611
88 org.python.python 0x000000010d2d3cb1 _PyFunction_Vectorcall + 289
89 org.python.python 0x000000010d3abe0c call_function + 732
90 org.python.python 0x000000010d3a934b _PyEval_EvalFrameDefault + 25723
91 org.python.python 0x000000010d3acb03 _PyEval_EvalCode + 2611
92 org.python.python 0x000000010d2d3cb1 _PyFunction_Vectorcall + 289
93 org.python.python 0x000000010d412870 pymain_run_module + 208
94 org.python.python 0x000000010d411f87 Py_RunMain + 1431
95 org.python.python 0x000000010d41258f pymain_main + 223
96 org.python.python 0x000000010d41249b Py_Main + 43
97 edu.ucsf.cgl.ChimeraX 0x000000010d28cdc8 main + 120
98 libdyld.dylib 0x00007fff57d973d5 start + 1
Thread 1:
0 libopenblas64_.0.dylib 0x000000010f47644b blas_thread_server + 123
1 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
2 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
3 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff57ecc332 swtch_pri + 10
1 libsystem_pthread.dylib 0x00007fff57f8de90 sched_yield + 11
2 libopenblas64_.0.dylib 0x000000010f47644b blas_thread_server + 123
3 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff57ecf86a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff57f8e56e _pthread_cond_wait + 722
2 libopenblas64_.0.dylib 0x000000010f47649f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff57ed40a6 kevent64 + 10
1 QtWebEngineCore 0x00000001235725ca 0x11f610000 + 66463178
2 QtWebEngineCore 0x00000001235724c7 0x11f610000 + 66462919
3 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
4 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
5 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
6 QtWebEngineCore 0x00000001234f884d 0x11f610000 + 65964109
7 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
8 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
9 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x0000000123504d5f 0x11f610000 + 66014559
4 QtWebEngineCore 0x000000012350580c 0x11f610000 + 66017292
5 QtWebEngineCore 0x000000012350540d 0x11f610000 + 66016269
6 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
7 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 6:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x0000000123504d5f 0x11f610000 + 66014559
4 QtWebEngineCore 0x000000012350580c 0x11f610000 + 66017292
5 QtWebEngineCore 0x000000012350537d 0x11f610000 + 66016125
6 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
7 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 7:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff57ed40a6 kevent64 + 10
1 QtWebEngineCore 0x00000001235725ca 0x11f610000 + 66463178
2 QtWebEngineCore 0x00000001235724c7 0x11f610000 + 66462919
3 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
4 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
5 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
6 QtWebEngineCore 0x0000000122437e32 0x11f610000 + 48397874
7 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
8 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
9 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x000000012354078f 0x11f610000 + 66258831
4 QtWebEngineCore 0x0000000123476089 0x11f610000 + 65429641
5 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
6 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
7 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
8 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
9 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
10 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 9:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff57ecf86a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff57f8e56e _pthread_cond_wait + 722
2 QtWebEngineCore 0x00000001235388bb 0x11f610000 + 66226363
3 QtWebEngineCore 0x000000012560955d 0x11f610000 + 100635997
4 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
5 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
6 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
7 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 10:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x000000012354078f 0x11f610000 + 66258831
4 QtWebEngineCore 0x0000000123476089 0x11f610000 + 65429641
5 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
6 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
7 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
8 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
9 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
10 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 11:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff57ed40a6 kevent64 + 10
1 QtWebEngineCore 0x00000001235725ca 0x11f610000 + 66463178
2 QtWebEngineCore 0x00000001235724c7 0x11f610000 + 66462919
3 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
4 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
5 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
6 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
7 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
8 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x000000012354078f 0x11f610000 + 66258831
4 QtWebEngineCore 0x0000000123476089 0x11f610000 + 65429641
5 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
6 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
7 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
8 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
9 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
10 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 13:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x000000012354078f 0x11f610000 + 66258831
4 QtWebEngineCore 0x0000000123476089 0x11f610000 + 65429641
5 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
6 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
7 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
8 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
9 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
10 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 14:: NetworkService
0 libsystem_kernel.dylib 0x00007fff57ed40a6 kevent64 + 10
1 QtWebEngineCore 0x00000001235725ca 0x11f610000 + 66463178
2 QtWebEngineCore 0x00000001235724c7 0x11f610000 + 66462919
3 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
4 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
5 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
6 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
7 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
8 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x000000012354078f 0x11f610000 + 66258831
4 QtWebEngineCore 0x0000000123476089 0x11f610000 + 65429641
5 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
6 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
7 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
8 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
9 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
10 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 16:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x0000000123504d5f 0x11f610000 + 66014559
4 QtWebEngineCore 0x000000012350580c 0x11f610000 + 66017292
5 QtWebEngineCore 0x000000012350546d 0x11f610000 + 66016365
6 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
7 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x000000012354078f 0x11f610000 + 66258831
4 QtWebEngineCore 0x0000000123476089 0x11f610000 + 65429641
5 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
6 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
7 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
8 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
9 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
10 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 18:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x000000012354078f 0x11f610000 + 66258831
4 QtWebEngineCore 0x0000000123476089 0x11f610000 + 65429641
5 QtWebEngineCore 0x00000001234ef19c 0x11f610000 + 65925532
6 QtWebEngineCore 0x00000001234a6ff8 0x11f610000 + 65630200
7 QtWebEngineCore 0x0000000123511458 0x11f610000 + 66065496
8 QtWebEngineCore 0x00000001235115ea 0x11f610000 + 66065898
9 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
10 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x0000000123504d5f 0x11f610000 + 66014559
4 QtWebEngineCore 0x000000012350553a 0x11f610000 + 66016570
5 QtWebEngineCore 0x00000001235053ad 0x11f610000 + 66016173
6 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
7 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 20:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2be431ee __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff2be4275c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff2be41ebe CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff294414c2 _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 21:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x0000000123504d5f 0x11f610000 + 66014559
4 QtWebEngineCore 0x000000012350580c 0x11f610000 + 66017292
5 QtWebEngineCore 0x000000012350537d 0x11f610000 + 66016125
6 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
7 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 22:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff57ecc22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff57ecc76c mach_msg + 60
2 QtWebEngineCore 0x00000001235409c6 0x11f610000 + 66259398
3 QtWebEngineCore 0x0000000123504d5f 0x11f610000 + 66014559
4 QtWebEngineCore 0x000000012350580c 0x11f610000 + 66017292
5 QtWebEngineCore 0x000000012350540d 0x11f610000 + 66016269
6 QtWebEngineCore 0x00000001235394a8 0x11f610000 + 66229416
7 libsystem_pthread.dylib 0x00007fff57f8b2eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff57f8e249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff57f8a40d thread_start + 13
Thread 23:
0 libsystem_pthread.dylib 0x00007fff57f8a3f0 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff57f8a3f0 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010f11c5c0 rcx: 0x000000010d7b0a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x000000010d7b0a80 rsp: 0x000000010d7b0a48
r8: 0x000000010d7b0f48 r9: 0x497137f58eee38df r10: 0x000000010f11c66c r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x00000001335ad518 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff57ed22c6 rfl: 0x0000000000000206 cr2: 0x00007fc22c808d48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff55950000 - 0x7fff55955ff7 libheimdal-asn1.dylib (520.270.1) /usr/lib/libheimdal-asn1.dylib
0x7fff55980000 - 0x7fff55a70fff libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib
0x7fff55a71000 - 0x7fff55cd2ffb libicucore.A.dylib (62141.0.1) /usr/lib/libicucore.A.dylib
0x7fff55d1f000 - 0x7fff55d20fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib
0x7fff55d21000 - 0x7fff55d39ff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff55d51000 - 0x7fff55df5ff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib
0x7fff55df6000 - 0x7fff55ffafff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib
0x7fff561d2000 - 0x7fff56523ff7 libnetwork.dylib (1229.250.15) /usr/lib/libnetwork.dylib
0x7fff565b5000 - 0x7fff56d3afdf libobjc.A.dylib (756.2) /usr/lib/libobjc.A.dylib
0x7fff56d4c000 - 0x7fff56d50ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib
0x7fff56d53000 - 0x7fff56d88fff libpcap.A.dylib (79.250.1) /usr/lib/libpcap.A.dylib
0x7fff56dde000 - 0x7fff56de1fff libpmenergy.dylib (194.267.1) /usr/lib/libpmenergy.dylib
0x7fff56de2000 - 0x7fff56de4fff libpmsample.dylib (194.267.1) /usr/lib/libpmsample.dylib
0x7fff56ea1000 - 0x7fff56eb9ffb libresolv.9.dylib (65.200.2) /usr/lib/libresolv.9.dylib
0x7fff56ebb000 - 0x7fff56ef6ff3 libsandbox.1.dylib (851.270.1) /usr/lib/libsandbox.1.dylib
0x7fff56f0a000 - 0x7fff56f0bff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib
0x7fff56f0c000 - 0x7fff570e9fff libsqlite3.dylib (274.26) /usr/lib/libsqlite3.dylib
0x7fff57302000 - 0x7fff57305ff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff57306000 - 0x7fff57313fff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff57318000 - 0x7fff573faff3 libxml2.2.dylib (32.10) /usr/lib/libxml2.2.dylib
0x7fff573fb000 - 0x7fff57423ff3 libxslt.1.dylib (16.5) /usr/lib/libxslt.1.dylib
0x7fff57424000 - 0x7fff57436ff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff57c1a000 - 0x7fff57c1eff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff57c1f000 - 0x7fff57c29ff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib
0x7fff57c2a000 - 0x7fff57c31ff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff57c32000 - 0x7fff57c3bff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib
0x7fff57c3c000 - 0x7fff57cc0fc3 libcorecrypto.dylib (602.260.2) /usr/lib/system/libcorecrypto.dylib
0x7fff57d47000 - 0x7fff57d80ff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib
0x7fff57d81000 - 0x7fff57dadff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib
0x7fff57dae000 - 0x7fff57daeffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff57daf000 - 0x7fff57dbbff3 libkxld.dylib (4903.271.2) /usr/lib/system/libkxld.dylib
0x7fff57dbc000 - 0x7fff57dbcff7 liblaunch.dylib (1336.261.2) /usr/lib/system/liblaunch.dylib
0x7fff57dbd000 - 0x7fff57dc2fff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib
0x7fff57dc3000 - 0x7fff57dc5ffb libquarantine.dylib (86.220.1) /usr/lib/system/libquarantine.dylib
0x7fff57dc6000 - 0x7fff57dc7ff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff57dc8000 - 0x7fff57ddfff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff57de0000 - 0x7fff57de0ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff57de1000 - 0x7fff57e68fff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib
0x7fff57e69000 - 0x7fff57e6cffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib
0x7fff57e6d000 - 0x7fff57e70ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff57e71000 - 0x7fff57e77fff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff57e78000 - 0x7fff57e7eff7 libsystem_dnssd.dylib (878.270.2) /usr/lib/system/libsystem_dnssd.dylib
0x7fff57e7f000 - 0x7fff57ecaffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff57ecb000 - 0x7fff57ef3ff7 libsystem_kernel.dylib (4903.271.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff57ef4000 - 0x7fff57f3fff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff57f40000 - 0x7fff57f6afff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff57f6b000 - 0x7fff57f75ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff57f76000 - 0x7fff57f7dfff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff57f7e000 - 0x7fff57f87fef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib
0x7fff57f88000 - 0x7fff57f92ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff57f93000 - 0x7fff57f96ff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff57f97000 - 0x7fff57f99ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff57f9a000 - 0x7fff57fa1ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff57fa2000 - 0x7fff57fb7fff libsystem_trace.dylib (906.260.1) /usr/lib/system/libsystem_trace.dylib
0x7fff57fb9000 - 0x7fff57fbeffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff57fbf000 - 0x7fff57feefff libxpc.dylib (1336.261.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 7
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 313487
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=803.6M resident=0K(0%) swapped_out_or_unallocated=803.6M(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 880K 2
CG image 164K 15
CoreAnimation 160K 13
CoreGraphics 8K 1
CoreImage 24K 2
CoreUI image data 1912K 21
CoreUI image file 328K 5
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 345.1M 256
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 16K 3
Memory Tag 242 12K 1
OpenGL GLSL 384K 4
STACK GUARD 96K 24
Stack 155.2M 25
Stack Guard 56.0M 1
VM_ALLOCATE 99.6M 66
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 52.4M 475
__DATA_CONST 48K 3
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 251.6M 169
__TEXT 552.2M 461
__UNICODE 564K 1
mapped file 83.8M 102
shared memory 2856K 23
=========== ======= =======
TOTAL 2.0G 1691
TOTAL, minus reserved VM space 1.6G 1691
===== Log before crash start =====
UCSF ChimeraX version: 1.4rc202205140117 (2022-05-14)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 3gl6
Summary of feedback from opening 3gl6 fetched from pdb
---
warnings | Unable to fetch template for 'ZN': might have incorrect bonds
Unable to fetch template for 'M3L': might have incorrect bonds
notes | Fetching compressed mmCIF 3gl6 from
http://files.rcsb.org/download/3gl6.cif
GET_TEMPLATE ZN
GET_TEMPLATE M3L
3gl6 title:
Crystal structure of JARID1A-PHD3 complexed with H3(1-9)K4me3 peptide [more
info...]
Chain information for 3gl6 #1
---
Chain | Description | UniProt
A | Histone demethylase JARID1A | JAD1A_HUMAN
B | Histone H3 |
Non-standard residues in 3gl6 #1
---
M3L — N-trimethyllysine
ZN — zinc ion
3gl6 mmCIF Assemblies
---
1| author_and_software_defined_assembly
> select b
Expected an objects specifier or a keyword
> select B
Nothing selected
> select /B:1-8
67 atoms, 66 bonds, 8 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> show sel cartoons
> select B:4
Expected an objects specifier or a keyword
> select /B:4
12 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> select /A
432 atoms, 407 bonds, 10 pseudobonds, 85 residues, 2 models selected
> hide sel atoms
> set bgColor white
> color (#!1 & sel) purple
> select /B
69 atoms, 66 bonds, 10 residues, 1 model selected
> color sel cornflower blue
> select /B:4
12 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> undo
> color sel cornflower blue
> select clear
> select /B:36@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:1648
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:37@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /B:4
12 atoms, 11 bonds, 1 residue, 1 model selected
> style sel stick
Changed 12 atom styles
> style sel sphere
Changed 12 atom styles
> style sel ball
Changed 12 atom styles
> style sel stick
Changed 12 atom styles
> hide sel atoms
> show sel atoms
> select /A:1636
11 atoms, 11 bonds, 1 residue, 1 model selected
> style sel stick
Changed 11 atom styles
> show sel atoms
> select /A:1626
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> select /A:1625
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> select /A:1626
7 atoms, 6 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /A:1636
11 atoms, 11 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /A:1635
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel atoms
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4rc202205140117 (2022-05-14)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-12.10.12
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,4
Processor Name: Intel Core i5
Processor Speed: 1.4 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 220.270.99.0.0 (iBridge: 16.16.6571.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.14.6 (18G95)
Kernel Version: Darwin 18.7.0
Time since boot: 2 days 1:31
Graphics/Displays:
Intel Iris Plus Graphics 645:
Chipset Model: Intel Iris Plus Graphics 645
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea6
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4rc202205140117
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.2
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 22.3.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.2.0
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 10.14.6, Intel Iris Plus Graphics 645 |
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Apple graphics driver crash.