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Opened 3 years ago
Closed 3 years ago
#6848 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19044
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x000019a4Windows fatal exception: code 0x (most recent call first):
File 8001010e
"C:Windows fatal exception: code 0x\Pr8001010e
oWindows fatal exception: code 0xgr8001010e
aWindows fatal exception: m code 0x8001010eFi
lWindows fatal exception: code 0xes8001010e
\Windows fatal exception: Chcode 0x8001010eim
eWindows fatal exception: racode 0xX8001010e
1Windows fatal exception: .3code 0x\8001010ebi
n\Windows fatal exception: lcode 0xi8001010eb\
sWindows fatal exception: code 0xit8001010e
e-Windows fatal exception: code 0xp8001010e
acWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xc8001010eh
imWindows fatal exception: ecode 0xr8001010ea
x\Windows fatal exception: ocode 0xp8001010ee
n_Windows fatal exception: ccode 0xo8001010em
maWindows fatal exception: ncode 0xd8001010e
\dWindows fatal exception: icode 0xa8001010el
ogWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 135code 0x in s8001010eh
ow_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\CWindows fatal exception: hcode 0xi8001010em
eraXWindows fatal exception: code 0x18001010e.
3\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010e
siWindows fatal exception: tcode 0xe8001010e-
pacWindows fatal exception: kcode 0xa8001010eg
es\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
_mWindows fatal exception: acode 0xi8001010en
.pWindows fatal exception: ycode 0x"8001010e, line
1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_moWindows fatal exception: dcode 0xu8001010el
e_asWindows fatal exception: _code 0xm8001010ea
in
Windows fatal exception: code 0x8001010eWindows fatal exception:
code 0xThread 0x8001010e000019a4
(most recent call first):
File Windows fatal exception: "code 0xC8001010e:
\Windows fatal exception: Pcode 0xr8001010eo
gWindows fatal exception: rcode 0xa8001010em
Windows fatal exception: Fcode 0xi8001010el
eWindows fatal exception: scode 0x\8001010eC
hWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: acode 0xX8001010e
1Windows fatal exception: .code 0x38001010e\
bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\sWindows fatal exception: icode 0xt8001010ee
-paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010ec
hWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: acode 0xx8001010e\
oWindows fatal exception: pcode 0xe8001010en
_cWindows fatal exception: ocode 0xm8001010em
anWindows fatal exception: dcode 0x\8001010ed
iaWindows fatal exception: lcode 0xo8001010eg
.pWindows fatal exception: ycode 0x"8001010e, line
107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packaWindows fatal exception: gcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x_8001010em
aWindows fatal exception: icode 0xn8001010e.
pWindows fatal exception: ycode 0x"8001010e, line
1018 in code 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
es\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\PWindows fatal exception: rcode 0xo8001010eg
ramWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\liWindows fatal exception: bcode 0x\8001010es
iteWindows fatal exception: -code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: ccode 0xh8001010ei
merax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Windows fatal exception: Pcode 0xr8001010eo
gramWindows fatal exception: code 0xF8001010ei
lesWindows fatal exception: \code 0xC8001010eh
imeWindows fatal exception: rcode 0xa8001010eX
1.Windows fatal exception: 3code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: scode 0xi8001010et
e-Windows fatal exception: pcode 0xa8001010ec
kaWindows fatal exception: gcode 0xe8001010es
\cWindows fatal exception: hcode 0xi8001010eWindows fatal exception: m
ecode 0xr8001010ea
x\oWindows fatal exception: pcode 0xe8001010eWindows fatal exception: ncode 0x_8001010ec
Windows fatal exception: code 0x8001010eo
Windows fatal exception: mWindows fatal exception: mcode 0xacode 0xn8001010ed
8001010eWindows fatal exception:
\code 0xd8001010ei
aloWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010eg
.Windows fatal exception: pcode 0xy8001010e"
, line Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
107
in Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010eWindows fatal exception:
Windows fatal exception: code 0xcode 0x File 8001010e8001010e
Windows fatal exception: "code 0xC8001010e:
\Windows fatal exception: Pcode 0xr8001010eo
gram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3Windows fatal exception: \code 0xb8001010ei
n\liWindows fatal exception: bcode 0x\8001010es
iteWindows fatal exception: -code 0xp8001010ea
ckaWindows fatal exception: gcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
eraWindows fatal exception: Xcode 0x_8001010em
aiWindows fatal exception: ncode 0x.8001010ep
y", line Windows fatal exception: 867code 0x in 8001010ei
nWindows fatal exception: icode 0xt8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
Program Files\ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\sWindows fatal exception: icode 0xt8001010ee
-Windows fatal exception: pWindows fatal exception: code 0xacode 0x8001010ec8001010e
k
aWindows fatal exception: gWindows fatal exception: code 0xecode 0xs8001010e\
8001010eC
hWindows fatal exception: icode 0xWindows fatal exception: mcode 0xer8001010ea8001010e
XWindows fatal exception: _code 0xmWindows fatal exception: acode 0xi8001010en
8001010e.
pWindows fatal exception: ycode 0x"Windows fatal exception: , line 8001010e1018code 0x
8001010e in
code 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m FWindows fatal exception: icode 0xl8001010ee
s\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX Windows fatal exception: 1code 0x.8001010e3
\biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xr8001010eu
npWindows fatal exception: ycode 0x.8001010ep
y"Windows fatal exception: , line code 0x1978001010e in
_rWindows fatal exception: ucode 0xn8001010e_
moWindows fatal exception: dcode 0xu8001010el
eWindows fatal exception: _code 0xa8001010esWindows fatal exception: _mcode 0xa8001010ei
n
Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010eThread 0x
Windows fatal exception: 000019a4Windows fatal exception: code 0xcode 0x8001010e8001010e
(most recent call first):
Windows fatal exception: File Windows fatal exception: "code 0xCcode 0x:8001010e\
P8001010erWindows fatal exception: ocode 0xg
8001010er
aWindows fatal exception: mcode 0x 8001010eFWindows fatal exception: icode 0xl
8001010ee
Windows fatal exception: scode 0x\8001010eC
hWindows fatal exception: Windows fatal exception: code 0xcode 0xi8001010em
8001010ee
rWindows fatal exception: aWindows fatal exception: Xcode 0x 8001010ecode 0x18001010e.
3Windows fatal exception: \Windows fatal exception: code 0xb8001010ei
code 0xn8001010eWindows fatal exception: \
liWindows fatal exception: code 0xbcode 0x8001010e\8001010es
i
te-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chWindows fatal exception: icode 0xm8001010ee
rax\Windows fatal exception: ocode 0xp8001010ee
n_cWindows fatal exception: ocode 0xm8001010em
andWindows fatal exception: \code 0xd8001010ei
aloWindows fatal exception: gcode 0x.8001010ep
y"Windows fatal exception: , line code 0x107 in 8001010eWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
Files\ChimeraWindows fatal exception: Xcode 0x 8001010e1.3\bin\lib\site
-paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010ech
imWindows fatal exception: ecode 0xr8001010ea
x\Windows fatal exception: ucode 0xi8001010e
\Windows fatal exception: gcode 0xu8001010ei
.pWindows fatal exception: ycode 0x"8001010e, line
301 in Windows fatal exception: ecode 0xv8001010ee
ntWindows fatal exception: _code 0xloop
File "C:8001010e\
ProgWindows fatal exception: rcode 0xa8001010em
Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_Windows fatal exception: lcode 0xo8001010eo
p
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eCWindows fatal exception:
hcode 0xWindows fatal exception: 8001010eicode 0x
m8001010eeWindows fatal exception: rcode 0xaX8001010e
1Windows fatal exception: Windows fatal exception: .code 0x38001010e\
code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\Windows fatal exception: Windows fatal exception: scode 0xicode 0x8001010et
e8001010eWindows fatal exception: -
pcode 0xa8001010eWindows fatal exception: c
code 0xkWindows fatal exception: a8001010eg
es\Windows fatal exception: Ccode 0xcode 0x8001010e8001010e
Windows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e_
maWindows fatal exception: icode 0xn8001010e.
py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\PrograWindows fatal exception: mcode 0x 8001010eF
ilesWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: code 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\libWindows fatal exception: \code 0xr8001010eu
npyWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 197code 0x in 8001010e_
ruWindows fatal exception: ncode 0x_8001010emo
duWindows fatal exception: lcode 0xe8001010e_
asWindows fatal exception: _code 0xm8001010ea
inWindows fatal exception:
code 0x8001010e
Windows fatal exception: Thread 0xcode 0x000019a48001010e (most recent call first):
File "Windows fatal exception: Ccode 0x:8001010e\
Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_moWindows fatal exception: dcode 0xu8001010el
e_asWindows fatal exception: _code 0xm8001010ea
inWindows fatal exception:
code 0x8001010e
Windows fatal exception: Thread 0xcode 0x000019a48001010e (most recent call first):
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
am Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lWindows fatal exception: icode 0xb8001010e\
siteWindows fatal exception: -code 0xp8001010ea
ckaWindows fatal exception: gcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
raXWindows fatal exception: _code 0xm8001010ea
in.Windows fatal exception: pcode 0xy8001010e"
, line 1018 in Windows fatal exception: 8001010e
File "CWindows fatal exception: :code 0x\8001010eP
rogrWindows fatal exception: acode 0xm8001010e
Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1Windows fatal exception: .code 0x38001010e\
bin\lib\sWindows fatal exception: icode 0xt8001010ee
-paWindows fatal exception: ccode 0xk8001010ea
gesWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X_Windows fatal exception: mcode 0xa8001010ei
n.Windows fatal exception: pcode 0xy8001010e"
, line 867Windows fatal exception: in code 0xi8001010en
itWindows fatal exception:
code 0x File 8001010e"
C:\Windows fatal exception: Pcode 0xr8001010eo
gram Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: code 0x8001010e, line
301 in eveWindows fatal exception: ncode 0xt8001010e_
loWindows fatal exception: ocode 0xp8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
aWindows fatal exception: mcode 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: \code 0xb8001010ei
n\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_cWindows fatal exception: ocode 0xm8001010em
andWindows fatal exception: \dcode 0xi8001010ea
loWindows fatal exception: gcode 0x.8001010ep
y"Windows fatal exception: , line code 0x1078001010e
Windows fatal exception: code 0x8001010e in
code 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
es\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "CWindows fatal exception: :code 0x\8001010eP
rogrWindows fatal exception: acode 0xm8001010e
FileWindows fatal exception: scode 0x\8001010eC
himWindows fatal exception: ecode 0xr8001010ea
X 1Windows fatal exception: .code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ib\Windows fatal exception: rcode 0xu8001010en
pyWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 87code 0x in 8001010e_
run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program FilesWindows fatal exception: \code 0xC8001010eh
imeraWindows fatal exception: Xcode 0x 8001010e1
.3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010ec
hiWindows fatal exception: mcode 0xe8001010era
x\oWindows fatal exception: pcode 0xe8001010en
_coWindows fatal exception: mcode 0xm8001010ea
nd\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program FWindows fatal exception: icode 0xl8001010ee
s\ChiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010ec
hiWindows fatal exception: mecode 0xr8001010ea
x\Windows fatal exception: ocode 0xp8001010ee
n_command\dialog.py", line 107 in
File "C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
Windows fatal exception: Fcode 0xi8001010el
eWindows fatal exception: scode 0x\8001010eC
hWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: aX code 0x1.8001010e3
\biWindows fatal exception: ncode 0x\8001010el
iWindows fatal exception: Windows fatal exception: bcode 0xcode 0x8001010e\
siWindows fatal exception: tcode 0xe8001010e-8001010ep
ackWindows fatal exception: acode 0xg8001010ee
sWindows fatal exception: \code 0xc8001010eh
imWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Windows fatal exception: ecode 0xr8001010ea
x\uWindows fatal exception: icode 0x\8001010eg
uiWindows fatal exception: Windows fatal exception: code 0xcode 0x.8001010ep8001010e
y
"Windows fatal exception: , line Windows fatal exception: code 0xcode 0x8001010e8001010e
301Windows fatal exception: in Windows fatal exception: code 0xcode 0xe8001010ev
en8001010eWindows fatal exception: tcode 0x
8001010e_
lWindows fatal exception: oWindows fatal exception: code 0xo8001010ecode 0xp8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aX 1Windows fatal exception: .code 0x38001010e\
bin\lWindows fatal exception: icode 0xb8001010e\
siteWindows fatal exception: -code 0xp8001010ea
ckaWindows fatal exception: gcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
raXWindows fatal exception: _code 0xm8001010ea
in.Windows fatal exception: pcode 0xy8001010e"
, line 867 in Windows fatal exception: icode 0xn8001010ei
t
File Windows fatal exception: "code 0xC8001010e:
\PrWindows fatal exception: ocode 0xg8001010er
am Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x000019a4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py", line 494 in mouse_pause_tracking
Windows fatal exception: access violation
===== Log before crash start =====
> ui mousemode right zoom
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> "C:\\\Users\\\ferra\\\Documents\\\University\\\Master\\\M2\\\S1\\\Stage\\\research
> and things\\\CARIN1\\\relion
> results\\\Krios\\\Capsid\\\postprocess_noewald.mrc"
Opened postprocess_noewald.mrc as #1, grid size 800,800,800, pixel 1.73, shown
at step 1, values float32
> volume #1 level -0.002726,0 level 0.0209,0.8 level 0.08279,1
> volume #1 region 0,0,0,799,799,799 step 4
> volume #1 step 2
> hkcage
Missing or invalid "h" argument: Expected an integer
> hkcage 2 1
> hide #!1 models
> show #!1 models
> hkcage 2 1 222r
Expected a keyword
> hkcage 2 1 orientatioin 222r
Expected a keyword
> hkcage 2 1 orientation 222r
> hkcage 2 1 radius 100 orientation 222r
> hkcage 2 1 radius 1000 orientation 222r
> hkcage 2 1 radius 500 orientation 222r
> hkcage 2 1 radius 300 orientation 222r
> hkcage 2 1 radius 350 orientation 222r
> hkcage 2 1 radius 350 orientation 222r color yellow
> hide #2 models
> show #2 models
> ui tool show "Fit in Map"
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = -5.633e-05, steps = 288
shifted from previous position = 7.98
rotated from previous position = 2.29 degrees
atoms outside contour = 230, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99920711 0.00730885 -0.03913737 2.40127019
-0.00739746 0.99997039 -0.00211965 6.54268975
0.03912072 0.00240749 0.99923159 3.87880473
Axis 0.05676197 -0.98121270 -0.18439013
Axis point -64.73203075 0.00000000 72.81670928
Rotation angle (degrees) 2.28546154
Shift along axis -6.99868273
Opened Icosahedron h = 2, k = 1 map 5 as #3, grid size 376,376,376, pixel
1.67, shown at level 0.000901, step 1, values float32
Fit map Icosahedron h = 2, k = 1 map 5 in map postprocess_noewald.mrc using
6491 points
correlation = -0.2064, correlation about mean = 0.01731, overlap = -0.0003146
steps = 1404, shift = 2.76, angle = 1.18 degrees
Position of Icosahedron h = 2, k = 1 map 5 (#3) relative to
postprocess_noewald.mrc (#1) coordinates:
Matrix rotation and translation
0.99930368 -0.01273746 -0.03507020 3.13607827
0.01254697 0.99990534 -0.00564661 3.92088847
0.03513881 0.00520266 0.99936890 3.45570770
Axis 0.14387494 -0.93105947 0.33530323
Axis point -116.01924783 0.00000000 100.09825375
Rotation angle (degrees) 2.16078230
Shift along axis -2.04066733
Average map value = -4.455e-05 for 28 atoms, 230 outside contour
> volume #3 level 0.01504
> volume #3 level 0.002717
> close #3
> ui mousemode right "translate selected models"
> select #1
3 models selected
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models
> #2,0.9993,-0.012737,-0.03507,661.58,0.012547,0.99991,-0.0056466,740.92,0.035139,0.0052027,0.99937,667.52
> view matrix models
> #2,0.9993,-0.012737,-0.03507,679.83,0.012547,0.99991,-0.0056466,698.49,0.035139,0.0052027,0.99937,690.52
> hkcage 2 1 radius 360 orientation 222r color yellow
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.007683, steps = 124
shifted from previous position = 6.05
rotated from previous position = 0.914 degrees
atoms outside contour = 175, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99882516 -0.02763018 -0.03981044 678.45219095
0.02727721 0.99958387 -0.00938265 697.52788824
0.04005312 0.00828571 0.99916320 684.70427485
Axis 0.17934710 -0.81067514 0.55735126
Axis point -17587.26667707 0.00000000 17841.15609523
Rotation angle (degrees) 2.82338575
Shift along axis -62.16929329
> hkcage 2 1 radius 380 orientation 222r color yellow
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004083, steps = 104
shifted from previous position = 11.4
rotated from previous position = 1.81 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932273 -0.00864320 -0.03576829 673.00790344
0.00744049 0.99940691 -0.03362244 706.21645538
0.03603768 0.03333353 0.99879435 679.70041719
Axis 0.67300475 -0.72175426 0.16166444
Axis point -18015.12616490 0.00000000 18157.65577544
Rotation angle (degrees) 2.85130110
Shift along axis 53.10616968
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004084, steps = 232
shifted from previous position = 0.027
rotated from previous position = 0.00508 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932286 -0.00865257 -0.03576249 673.02426089
0.00744688 0.99940389 -0.03371059 706.19502865
0.03603286 0.03342145 0.99879159 679.69962402
Axis 0.67400576 -0.72082539 0.16163845
Axis point -18010.94264132 0.00000000 18134.20213921
Rotation angle (degrees) 2.85455601
Shift along axis 54.44452205
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004085, steps = 288
shifted from previous position = 0.0056
rotated from previous position = 0.0011 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932250 -0.00864992 -0.03577322 673.02652858
0.00744444 0.99940445 -0.03369473 706.19364492
0.03604337 0.03340559 0.99879174 679.69469468
Axis 0.67373387 -0.72108846 0.16159861
Axis point -18007.37069239 0.00000000 18136.78010379
Rotation angle (degrees) 2.85435838
Shift along axis 54.05039913
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004086, steps = 524
shifted from previous position = 0.00129
rotated from previous position = 0.00271 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932115 -0.00868479 -0.03580232 673.02769276
0.00747783 0.99940372 -0.03370883 706.19348730
0.03607373 0.03341822 0.99879022 679.69415184
Axis 0.67351576 -0.72116466 0.16216678
Axis point -17990.33576686 0.00000000 18119.24429038
Rotation angle (degrees) 2.85642175
Shift along axis 54.23678447
> hkcage 2 1 radius 370 orientation 222r color yellow
> select #1
3 models selected
> view matrix models #1,1,0,0,-17.062,0,1,0,23.24,0,0,1,-5.5327
> volume #1 step 1
> select clear
> select #1
3 models selected
> select #1
3 models selected
> ui mousemode right "rotate selected models"
> select #1
3 models selected
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models
> #2,0.99977,0.007531,0.020151,673.03,-0.0076521,0.99995,0.0059368,706.19,-0.020105,-0.0060897,0.99978,679.69
> view matrix models
> #2,0.99996,0.0083668,0.0043423,673.03,-0.0085006,0.99946,0.031757,706.19,-0.0040742,-0.031793,0.99949,679.69
> view matrix models
> #2,0.99981,0.019466,-0.00012504,673.03,-0.019454,0.9994,0.028702,706.19,0.00068366,-0.028694,0.99959,679.69
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.99981,0.019466,-0.00012504,673.22,-0.019454,0.9994,0.028702,705.83,0.00068366,-0.028694,0.99959,680.99
> ~select #2
Nothing selected
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> ui mousemode right "move picked models"
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.9998,0.019992,0.0031231,673.22,-0.020077,0.99934,0.030196,705.83,-0.0025173,-0.030253,0.99954,680.99
> view matrix models
> #2,0.96904,-0.055988,0.24046,673.22,0.10246,0.97732,-0.18534,705.83,-0.22463,0.20424,0.9528,680.99
> view matrix models
> #2,0.97662,-0.069191,0.20354,673.22,0.11107,0.97303,-0.20216,705.83,-0.18407,0.22004,0.95797,680.99
> view matrix models
> #2,0.9666,-0.052356,0.2509,673.22,0.099882,0.97847,-0.18062,705.83,-0.23604,0.19964,0.95101,680.99
> view matrix models
> #2,0.85763,0.31654,0.40531,673.22,0.22682,0.47451,-0.85053,705.83,-0.46155,0.82137,0.33515,680.99
> view matrix models
> #2,0.79317,0.42612,0.43508,673.22,0.18146,0.5166,-0.83678,705.83,-0.58133,0.74266,0.33243,680.99
> hkcage 2 1 radius 370 orientation 222r color yellow meshTrue #1
Expected a keyword
> hkcage 2 1 radius 370 orientation 222r color yellow mesh true #1
Expected a keyword
> hkcage 2 1 radius 370 orientation 222r color yellow mesh true
> close #3
> close #2
> hkcage 2 1 radius 370 orientation 222r color yellow mesh true
> select clear
> hkcage 2 1 radius 370 orientation 222r color red mesh true
> hkcage 2 1 radius 370 orientation 222r color red mesh true replace true
> hkcage 2 1 radius 370 orientation 222r color red replace true
> hkcage 2 1 radius 370 orientation 222r color red replace true center #1
Expected a keyword
> hkcage 2 1 radius 370 orientation 222r color red replace true
> center #1
Unknown command: center #1
> center #1
Unknown command: center #1
> close #3
> close #2
> hkcage 2 1 radius 370 orientation 222r color red replace true
> map coordinates 0 0 0
Unknown command: map coordinates 0 0 0
> map coordinates
Unknown command: map coordinates
> ui mousemode right "translate selected models"
> ui mousemode right zoom
> ui tool show "Map Coordinates"
> show #2 target m
No atomic structure models chosen
> close #2
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> ui mousemode right "move picked models"
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #2,1,0,0,-14.521,0,1,0,28.572,0,0,1,-8.3901
> view matrix models #1,1,0,0,-19.248,0,1,0,-1.9795,0,0,1,-5.4772
> view matrix models #1,1,0,0,-23.841,0,1,0,25.342,0,0,1,-10.193
> hkcage 2 1 radius 380 orientation 222r color yellow replace true
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #1,1,0,0,-7.9241,0,1,0,22.059,0,0,1,-7.6217
> hkcage 2 1 radius 375 orientation 222r color yellow replace true
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #1,1,0,0,-20.575,0,1,0,25.381,0,0,1,-9.5052
> view matrix models #2,1,0,0,-15.094,0,1,0,29.98,0,0,1,-9.335
> view matrix models #1,1,0,0,-17.457,0,1,0,25.605,0,0,1,-12.829
> select clear
> turn x 90
> hkcage 2 1 radius 372 orientation 222r color yellow replace true
> hkcage 2 1 radius 375 orientation 222r color yellow replace true
> hide #!1 models
> show #!1 models
> ui tool show "Surface Color"
> color radial #1.2 palette #ff0000:#ffffff:#0000ff
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff center
> -16.593,26.469,-11.965
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
> help help:user/tools/surfacecolor.html
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff center
> 399.5,399.5,399.5
> color radial #1.2 palette 600,#ff0000:700,#ffffff:800,#0000ff center
> 399.5,399.5,399.5
> color radial #1.2 palette 600,#ff0000:700,#ffffff:800,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#ff0000:350,#ffffff:400,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#ff0000:320,#ffffff:350,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#ff0000:310,#ffffff:350,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:310,#ffffff:350,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:310,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:350,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:360,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:370,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:340,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:330,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:310,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:320,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff center
> -16.593,26.469,-11.965
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #1,1,0,0,-19.918,0,1,0,27.445,0,0,1,-11.643
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #2,1,0,0,-15.094,0,1,0,29.98,0,0,1,-9.335
> hkcage 2 1 radius 365 orientation 222r color yellow replace true
> save "C:/Users/ferra/Documents/University/Master/M2/S1/Stage/#report/pdbs
> for figures/capsid/sassion capsid and cage.cxs"
> volume #1 level 0.01125
> volume #1 level 0.00711
> key #45c500:300 #3369ff:325 #a200ff:340 showTool true
> ui mousemode right "color key"
> key #45c500:300 #3369ff:325 #a200ff:340 white:
> key #45c500:300 #3369ff:325 #a200ff:340 #63fcff:
> key #45c500:300 #3369ff:325 #a200ff:340 #c7ff2c:
> key #45c500:300 #3369ff:325 #a200ff:340 #ff0a0a:
> key #45c500:300 #3369ff:325 #a200ff:340 red:
> key #45c500:300 #3369ff:325 #a200ff:340 red:3
> key #45c500:300 #3369ff:325 #a200ff:340 red:35
> key #45c500:300 #3369ff:325 #a200ff:340 red:350
> ui mousemode right "move picked models"
> ui mousemode right "color key"
> key colorTreatment distinct
> key colorTreatment blended
> key colorTreatment distinct
> key colorTreatment blended
> key delete
> ui mousemode right "move picked models"
> key #45c500:300 #3369ff:325 #a200ff:340 showTool true
> ui mousemode right "color key"
> key #45c500:300 #3369ff:325 #a200ff:340 white:
> key #45c500:300 #3369ff:325 #a200ff:340 white:3
> key #45c500:300 #3369ff:325 #a200ff:340 white:35
> key #45c500:300 #3369ff:325 #a200ff:340 white:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ffad73:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff7a06:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff7801:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff7700:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff5500:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff1100:350
> key #45c500:300 #3369ff:325 #a200ff:340 red:350
> ui mousemode right "move picked models"
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:350,#800000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:360,#800000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:370,#800000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:390,#800000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:390,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:350,#a200ff:390,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:390,#ff0000
> center -16.593,26.469,-11.965
> key #45c500:300 #3369ff:325 #a200ff:340 red:390 showTool true
> ui mousemode right "color key"
> key delete
> ui mousemode right "move picked models"
No surface chosen for coloring
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:700,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:350,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:360,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> hide #2 models
> show #2 models
> save "C:/Users/ferra/Documents/University/Master/M2/S1/Stage/#report/pdbs
> for figures/capsid/sassion capsid and cage.cxs"
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open
> "C:\\\Users\\\ferra\\\Documents\\\University\\\Master\\\M2\\\S1\\\Stage\\\\#report\\\pdbs
> for figures\\\capsid\\\sassion capsid and cage.cxs"
Opened postprocess_noewald.mrc as #1, grid size 800,800,800, pixel 1.73, shown
at level 0.00711, step 1, values float32
Log from Fri May 13 11:59:07 2022
> ui mousemode right zoom
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> "C:\\\Users\\\ferra\\\Documents\\\University\\\Master\\\M2\\\S1\\\Stage\\\research
> and things\\\CARIN1\\\relion
> results\\\Krios\\\Capsid\\\postprocess_noewald.mrc"
Opened postprocess_noewald.mrc as #1, grid size 800,800,800, pixel 1.73, shown
at step 1, values float32
> volume #1 level -0.002726,0 level 0.0209,0.8 level 0.08279,1
> volume #1 region 0,0,0,799,799,799 step 4
[Repeated 1 time(s)]
> volume #1 step 2
> hkcage
Missing or invalid "h" argument: Expected an integer
> hkcage 2 1
> hide #!1 models
> show #!1 models
> hkcage 2 1 222r
Expected a keyword
> hkcage 2 1 orientatioin 222r
Expected a keyword
> hkcage 2 1 orientation 222r
> hkcage 2 1 radius 100 orientation 222r
> hkcage 2 1 radius 1000 orientation 222r
> hkcage 2 1 radius 500 orientation 222r
> hkcage 2 1 radius 300 orientation 222r
> hkcage 2 1 radius 350 orientation 222r
> hkcage 2 1 radius 350 orientation 222r color yellow
> hide #2 models
> show #2 models
> ui tool show "Fit in Map"
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = -5.633e-05, steps = 288
shifted from previous position = 7.98
rotated from previous position = 2.29 degrees
atoms outside contour = 230, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99920711 0.00730885 -0.03913737 2.40127019
-0.00739746 0.99997039 -0.00211965 6.54268975
0.03912072 0.00240749 0.99923159 3.87880473
Axis 0.05676197 -0.98121270 -0.18439013
Axis point -64.73203075 0.00000000 72.81670928
Rotation angle (degrees) 2.28546154
Shift along axis -6.99868273
Opened Icosahedron h = 2, k = 1 map 5 as #3, grid size 376,376,376, pixel
1.67, shown at level 0.000901, step 1, values float32
Fit map Icosahedron h = 2, k = 1 map 5 in map postprocess_noewald.mrc using
6491 points
correlation = -0.2064, correlation about mean = 0.01731, overlap = -0.0003146
steps = 1404, shift = 2.76, angle = 1.18 degrees
Position of Icosahedron h = 2, k = 1 map 5 (#3) relative to
postprocess_noewald.mrc (#1) coordinates:
Matrix rotation and translation
0.99930368 -0.01273746 -0.03507020 3.13607827
0.01254697 0.99990534 -0.00564661 3.92088847
0.03513881 0.00520266 0.99936890 3.45570770
Axis 0.14387494 -0.93105947 0.33530323
Axis point -116.01924783 0.00000000 100.09825375
Rotation angle (degrees) 2.16078230
Shift along axis -2.04066733
Average map value = -4.455e-05 for 28 atoms, 230 outside contour
> volume #3 level 0.01504
> volume #3 level 0.002717
> close #3
> ui mousemode right "translate selected models"
> select #1
3 models selected
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models
> #2,0.9993,-0.012737,-0.03507,661.58,0.012547,0.99991,-0.0056466,740.92,0.035139,0.0052027,0.99937,667.52
> view matrix models
> #2,0.9993,-0.012737,-0.03507,679.83,0.012547,0.99991,-0.0056466,698.49,0.035139,0.0052027,0.99937,690.52
> hkcage 2 1 radius 360 orientation 222r color yellow
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.007683, steps = 124
shifted from previous position = 6.05
rotated from previous position = 0.914 degrees
atoms outside contour = 175, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99882516 -0.02763018 -0.03981044 678.45219095
0.02727721 0.99958387 -0.00938265 697.52788824
0.04005312 0.00828571 0.99916320 684.70427485
Axis 0.17934710 -0.81067514 0.55735126
Axis point -17587.26667707 0.00000000 17841.15609523
Rotation angle (degrees) 2.82338575
Shift along axis -62.16929329
> hkcage 2 1 radius 380 orientation 222r color yellow
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004083, steps = 104
shifted from previous position = 11.4
rotated from previous position = 1.81 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932273 -0.00864320 -0.03576829 673.00790344
0.00744049 0.99940691 -0.03362244 706.21645538
0.03603768 0.03333353 0.99879435 679.70041719
Axis 0.67300475 -0.72175426 0.16166444
Axis point -18015.12616490 0.00000000 18157.65577544
Rotation angle (degrees) 2.85130110
Shift along axis 53.10616968
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004084, steps = 232
shifted from previous position = 0.027
rotated from previous position = 0.00508 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932286 -0.00865257 -0.03576249 673.02426089
0.00744688 0.99940389 -0.03371059 706.19502865
0.03603286 0.03342145 0.99879159 679.69962402
Axis 0.67400576 -0.72082539 0.16163845
Axis point -18010.94264132 0.00000000 18134.20213921
Rotation angle (degrees) 2.85455601
Shift along axis 54.44452205
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004085, steps = 288
shifted from previous position = 0.0056
rotated from previous position = 0.0011 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932250 -0.00864992 -0.03577322 673.02652858
0.00744444 0.99940445 -0.03369473 706.19364492
0.03604337 0.03340559 0.99879174 679.69469468
Axis 0.67373387 -0.72108846 0.16159861
Axis point -18007.37069239 0.00000000 18136.78010379
Rotation angle (degrees) 2.85435838
Shift along axis 54.05039913
Fit molecule Icosahedron h = 2, k = 1 (#2) to map postprocess_noewald.mrc (#1)
using 230 atoms
average map value = 0.004086, steps = 524
shifted from previous position = 0.00129
rotated from previous position = 0.00271 degrees
atoms outside contour = 201, contour level = 0.015612
Position of Icosahedron h = 2, k = 1 (#2) relative to postprocess_noewald.mrc
(#1) coordinates:
Matrix rotation and translation
0.99932115 -0.00868479 -0.03580232 673.02769276
0.00747783 0.99940372 -0.03370883 706.19348730
0.03607373 0.03341822 0.99879022 679.69415184
Axis 0.67351576 -0.72116466 0.16216678
Axis point -17990.33576686 0.00000000 18119.24429038
Rotation angle (degrees) 2.85642175
Shift along axis 54.23678447
> hkcage 2 1 radius 370 orientation 222r color yellow
> select #1
3 models selected
> view matrix models #1,1,0,0,-17.062,0,1,0,23.24,0,0,1,-5.5327
> volume #1 step 1
> select clear
> select #1
3 models selected
> select #1
3 models selected
> ui mousemode right "rotate selected models"
> select #1
3 models selected
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models
> #2,0.99977,0.007531,0.020151,673.03,-0.0076521,0.99995,0.0059368,706.19,-0.020105,-0.0060897,0.99978,679.69
> view matrix models
> #2,0.99996,0.0083668,0.0043423,673.03,-0.0085006,0.99946,0.031757,706.19,-0.0040742,-0.031793,0.99949,679.69
> view matrix models
> #2,0.99981,0.019466,-0.00012504,673.03,-0.019454,0.9994,0.028702,706.19,0.00068366,-0.028694,0.99959,679.69
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.99981,0.019466,-0.00012504,673.22,-0.019454,0.9994,0.028702,705.83,0.00068366,-0.028694,0.99959,680.99
> ~select #2
Nothing selected
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> ui mousemode right "move picked models"
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.9998,0.019992,0.0031231,673.22,-0.020077,0.99934,0.030196,705.83,-0.0025173,-0.030253,0.99954,680.99
> view matrix models
> #2,0.96904,-0.055988,0.24046,673.22,0.10246,0.97732,-0.18534,705.83,-0.22463,0.20424,0.9528,680.99
> view matrix models
> #2,0.97662,-0.069191,0.20354,673.22,0.11107,0.97303,-0.20216,705.83,-0.18407,0.22004,0.95797,680.99
> view matrix models
> #2,0.9666,-0.052356,0.2509,673.22,0.099882,0.97847,-0.18062,705.83,-0.23604,0.19964,0.95101,680.99
> view matrix models
> #2,0.85763,0.31654,0.40531,673.22,0.22682,0.47451,-0.85053,705.83,-0.46155,0.82137,0.33515,680.99
> view matrix models
> #2,0.79317,0.42612,0.43508,673.22,0.18146,0.5166,-0.83678,705.83,-0.58133,0.74266,0.33243,680.99
> hkcage 2 1 radius 370 orientation 222r color yellow meshTrue #1
Expected a keyword
> hkcage 2 1 radius 370 orientation 222r color yellow mesh true #1
Expected a keyword
> hkcage 2 1 radius 370 orientation 222r color yellow mesh true
[Repeated 1 time(s)]
> close #3
> close #2
> hkcage 2 1 radius 370 orientation 222r color yellow mesh true
> select clear
> hkcage 2 1 radius 370 orientation 222r color red mesh true
> hkcage 2 1 radius 370 orientation 222r color red mesh true replace true
> hkcage 2 1 radius 370 orientation 222r color red replace true
> hkcage 2 1 radius 370 orientation 222r color red replace true center #1
Expected a keyword
> hkcage 2 1 radius 370 orientation 222r color red replace true
> center #1
Unknown command: center #1
> center #1
Unknown command: center #1
> close #3
> close #2
> hkcage 2 1 radius 370 orientation 222r color red replace true
> map coordinates 0 0 0
Unknown command: map coordinates 0 0 0
> map coordinates
Unknown command: map coordinates
> ui mousemode right "translate selected models"
> ui mousemode right zoom
> ui tool show "Map Coordinates"
> show #2 target m
No atomic structure models chosen
> close #2
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> ui mousemode right "move picked models"
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #2,1,0,0,-14.521,0,1,0,28.572,0,0,1,-8.3901
> view matrix models #1,1,0,0,-19.248,0,1,0,-1.9795,0,0,1,-5.4772
> view matrix models #1,1,0,0,-23.841,0,1,0,25.342,0,0,1,-10.193
> hkcage 2 1 radius 380 orientation 222r color yellow replace true
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #1,1,0,0,-7.9241,0,1,0,22.059,0,0,1,-7.6217
> hkcage 2 1 radius 375 orientation 222r color yellow replace true
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #1,1,0,0,-20.575,0,1,0,25.381,0,0,1,-9.5052
> view matrix models #2,1,0,0,-15.094,0,1,0,29.98,0,0,1,-9.335
> view matrix models #1,1,0,0,-17.457,0,1,0,25.605,0,0,1,-12.829
> select clear
> turn x 90
> hkcage 2 1 radius 372 orientation 222r color yellow replace true
> hkcage 2 1 radius 375 orientation 222r color yellow replace true
> hide #!1 models
> show #!1 models
> ui tool show "Surface Color"
> color radial #1.2 palette #ff0000:#ffffff:#0000ff
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff center
> -16.593,26.469,-11.965
[Repeated 1 time(s)]
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
Surface Color: could not parse center "399.9" as 3 numbers
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff
> help help:user/tools/surfacecolor.html
> color radial #1.2 palette 1.252,#ff0000:197.2,#ffffff:393.2,#0000ff center
> 399.5,399.5,399.5
> color radial #1.2 palette 600,#ff0000:700,#ffffff:800,#0000ff center
> 399.5,399.5,399.5
> color radial #1.2 palette 600,#ff0000:700,#ffffff:800,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#ff0000:350,#ffffff:400,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#ff0000:320,#ffffff:350,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#ff0000:310,#ffffff:350,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:310,#ffffff:350,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:310,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:350,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:360,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
[Repeated 1 time(s)]
> color radial #1.2 palette 300,#45c500:370,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:340,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:330,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:310,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:320,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#a357ff:1000,#0000ff center
> -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff center
> -16.593,26.469,-11.965
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #1,1,0,0,-19.918,0,1,0,27.445,0,0,1,-11.643
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> select #2
230 atoms, 300 bonds, 230 residues, 1 model selected
> view matrix models #2,1,0,0,-15.094,0,1,0,29.98,0,0,1,-9.335
> hkcage 2 1 radius 365 orientation 222r color yellow replace true
> save "C:/Users/ferra/Documents/University/Master/M2/S1/Stage/#report/pdbs
> for figures/capsid/sassion capsid and cage.cxs"
> volume #1 level 0.01125
> volume #1 level 0.00711
> key #45c500:300 #3369ff:325 #a200ff:340 showTool true
> ui mousemode right "color key"
> key #45c500:300 #3369ff:325 #a200ff:340 white:
> key #45c500:300 #3369ff:325 #a200ff:340 #63fcff:
> key #45c500:300 #3369ff:325 #a200ff:340 #c7ff2c:
> key #45c500:300 #3369ff:325 #a200ff:340 #ff0a0a:
> key #45c500:300 #3369ff:325 #a200ff:340 red:
> key #45c500:300 #3369ff:325 #a200ff:340 red:3
> key #45c500:300 #3369ff:325 #a200ff:340 red:35
> key #45c500:300 #3369ff:325 #a200ff:340 red:350
> ui mousemode right "move picked models"
> ui mousemode right "color key"
> key colorTreatment distinct
> key colorTreatment blended
> key colorTreatment distinct
> key colorTreatment blended
> key delete
> ui mousemode right "move picked models"
> key #45c500:300 #3369ff:325 #a200ff:340 showTool true
> ui mousemode right "color key"
> key #45c500:300 #3369ff:325 #a200ff:340 white:
> key #45c500:300 #3369ff:325 #a200ff:340 white:3
> key #45c500:300 #3369ff:325 #a200ff:340 white:35
> key #45c500:300 #3369ff:325 #a200ff:340 white:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ffad73:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff7a06:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff7801:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff7700:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff5500:350
> key #45c500:300 #3369ff:325 #a200ff:340 #ff1100:350
> key #45c500:300 #3369ff:325 #a200ff:340 red:350
> ui mousemode right "move picked models"
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:350,#800000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:360,#800000
> center -16.593,26.469,-11.965
[Repeated 1 time(s)]
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:370,#800000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:390,#800000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:390,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:350,#a200ff:390,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:390,#ff0000
> center -16.593,26.469,-11.965
> key #45c500:300 #3369ff:325 #a200ff:340 red:390 showTool true
> ui mousemode right "color key"
> key delete
> ui mousemode right "move picked models"
No surface chosen for coloring
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:700,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:340,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:350,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> color radial #1.2 palette 300,#45c500:325,#3369ff:360,#a200ff:400,#ff0000
> center -16.593,26.469,-11.965
> hkcage 2 1 radius 370 orientation 222r color yellow replace true
> hide #2 models
> show #2 models
> save "C:/Users/ferra/Documents/University/Master/M2/S1/Stage/#report/pdbs
> for figures/capsid/sassion capsid and cage.cxs"
——— End of log from Fri May 13 11:59:07 2022 ———
opened ChimeraX session
OpenGL version: 3.3.0 - Build 27.20.100.9268
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel
Manufacturer: ASUSTeK COMPUTER INC.
Model: ZenBook UX463FA_UX463FA
OS: Microsoft Windows 10 Education (Build 19044)
Memory: 8,356,806,656
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-10510U CPU @ 1.80GHz
OSLanguage: fr-FR
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-Clipper: 0.17.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.3
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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