Opened 3 years ago

Closed 3 years ago

#6944 closed defect (duplicate)

Deleting status bar: wrapped C/C++ object of type QScreen has been deleted

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "/Volumes/GoogleDrive/My Drive/Applications/SNF/PAC_differentpHs.cxs"

Log from Mon Oct 18 17:38:19 2021UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "/Volumes/GoogleDrive/My Drive/SNF/PAC_differentpHs.cxs"

Log from Mon Sep 20 17:51:47 2021UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 7JNC format mmcif fromDatabase pdb

7jnc title:  
cryo-EM structure of human proton-activated chloride channel PAC at pH 4 [more
info...]  
  
Chain information for 7jnc #1  
---  
Chain | Description  
A B C | Proton-activated chloride channel  
  
Non-standard residues in 7jnc #1  
---  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> select clear

> select clear

> select /A:90

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

323 atoms, 328 bonds, 44 residues, 1 model selected  

> select up

2163 atoms, 2221 bonds, 290 residues, 1 model selected  

> select up

6573 atoms, 6753 bonds, 876 residues, 1 model selected  

> hide sel atoms

> select ::name="CYS"

87 atoms, 75 bonds, 15 residues, 1 model selected  

> show sel atoms

> select clear

> select /A:223@SG

1 atom, 1 residue, 1 model selected  

> select up

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select sel @< 5

51 atoms, 45 bonds, 11 residues, 1 model selected  

> show sel atoms

> color sel byhetero

> open 7JNC

7jnc title:  
cryo-EM structure of human proton-activated chloride channel PAC at pH 4 [more
info...]  
  
Chain information for 7jnc #2  
---  
Chain | Description  
A B C | Proton-activated chloride channel  
  
Non-standard residues in 7jnc #2  
---  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> show sel cartoons

> close #2

> open 7JNA

7jna title:  
Cryo-EM structure of human proton-activated chloride channel PAC at pH 8 [more
info...]  
  
Chain information for 7jna #2  
---  
Chain | Description  
A B C | Proton-activated chloride channel  
  
Non-standard residues in 7jna #2  
---  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> ui tool show Matchmaker

> matchmaker #1 to #2

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jna, chain A (#2) with 7jnc, chain A (#1), sequence alignment
score = 1507.5  
RMSD between 179 pruned atom pairs is 0.776 angstroms; (across all 278 pairs:
15.264)  
  

> select clear

> select #1/A:95

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

323 atoms, 328 bonds, 44 residues, 1 model selected  

> select up

2163 atoms, 2221 bonds, 290 residues, 1 model selected  

> hide sel cartoons

> hide sel atoms

> select #2/A:211

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

64 atoms, 65 bonds, 8 residues, 1 model selected  

> select up

2116 atoms, 2174 bonds, 281 residues, 1 model selected  

> hide sel atoms

> hide sel cartoons

> select #1/C:95

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select add #2/C:93

20 atoms, 18 bonds, 2 residues, 2 models selected  

> select up

586 atoms, 595 bonds, 80 residues, 2 models selected  

> select up

4279 atoms, 4395 bonds, 571 residues, 2 models selected  

> hide sel atoms

> hide sel cartoons

> select #1/B:214

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/B:214

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select add #1/B:214

14 atoms, 14 bonds, 2 residues, 2 models selected  

> select up

19 atoms, 19 bonds, 3 residues, 2 models selected  

> select up

4279 atoms, 4395 bonds, 571 residues, 2 models selected  

> hide sel atoms

> ui tool show Distances

> ui tool show Contacts

> ui tool show Matchmaker

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain A (#1) with 7jna, chain A (#2), sequence alignment
score = 1507.5  
RMSD between 179 pruned atom pairs is 0.776 angstroms; (across all 278 pairs:
15.264)  
  

> matchmaker #2 & sel to #1 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain B (#1) with 7jna, chain B (#2), sequence alignment
score = 1507.5  
RMSD between 179 pruned atom pairs is 0.776 angstroms; (across all 278 pairs:
15.264)  
  

> select ::name="CYS"

174 atoms, 150 bonds, 30 residues, 2 models selected  

> select add #2/B:329

179 atoms, 154 bonds, 31 residues, 2 models selected  

> select up

4325 atoms, 4412 bonds, 634 residues, 2 models selected  

> select up

12837 atoms, 13185 bonds, 1713 residues, 2 models selected  

> ui tool show Matchmaker

> matchmaker #2 & sel to #1 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain A (#1) with 7jna, chain A (#2), sequence alignment
score = 1507.5  
RMSD between 179 pruned atom pairs is 0.776 angstroms; (across all 278 pairs:
15.264)  
  

> select clear

Drag select of 162 residues  

> matchmaker #2 & sel to #1 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain B (#1) with 7jna, chain B (#2), sequence alignment
score = 363.7  
RMSD between 32 pruned atom pairs is 0.786 angstroms; (across all 75 pairs:
16.121)  
  

> select clear

> select ::name="ALA"

615 atoms, 504 bonds, 123 residues, 2 models selected  

> select clear

Drag select of 367 residues, 56 atoms, 58 bonds  

> ui tool show Matchmaker

> matchmaker #2 & sel to #1 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain B (#1) with 7jna, chain B (#2), sequence alignment
score = 783.6  
RMSD between 172 pruned atom pairs is 0.764 angstroms; (across all 174 pairs:
0.822)  
  

> select clear

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain A (#1) with 7jna, chain A (#2), sequence alignment
score = 1507.5  
RMSD between 179 pruned atom pairs is 0.776 angstroms; (across all 278 pairs:
15.264)  
  

> select ::name="ALA"

615 atoms, 504 bonds, 123 residues, 2 models selected  

> save "/Users/zck761/Google Drive/My Drive/SNF/PAC_differentpHs.cxs"

> open 7Ji3

Summary of feedback from opening 7Ji3 fetched from pdb  
---  
note | Fetching compressed mmCIF 7ji3 from
http://files.rcsb.org/download/7ji3.cif  
  
7ji3 title:  
Cryo-EM structure of a proton-activated chloride channel [more info...]  
  
Chain information for 7ji3 #3  
---  
Chain | Description  
A B C | Proton-activated chloride channel  
  

> ui tool show Matchmaker

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain A (#1) with 7jna, chain A (#2), sequence alignment
score = 1507.5  
RMSD between 179 pruned atom pairs is 0.776 angstroms; (across all 278 pairs:
15.264)  
  

> matchmaker #!3 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jnc, chain A (#1) with 7ji3, chain A (#3), sequence alignment
score = 890.2  
RMSD between 126 pruned atom pairs is 0.844 angstroms; (across all 258 pairs:
15.664)  
  

> select add #3/B:331

620 atoms, 508 bonds, 124 residues, 3 models selected  

> select clear

> select add #3/B:69

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select add #3/A:74

13 atoms, 11 bonds, 2 residues, 1 model selected  

> select up

474 atoms, 476 bonds, 68 residues, 1 model selected  

> select up

4000 atoms, 4092 bonds, 518 residues, 1 model selected  

> hide sel cartoons

Drag select of 236 residues  

> matchmaker #!3 & sel to #2 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7jna, chain B (#2) with 7ji3, chain C (#3), sequence alignment
score = 271.7  
RMSD between 65 pruned atom pairs is 0.922 angstroms; (across all 71 pairs:
1.218)  
  

> save "/Users/zck761/Google Drive/My Drive/SNF/PAC_differentpHs.cxs"

——— End of log from Mon Sep 20 17:51:47 2021 ———

opened ChimeraX session  

> set bgColor white

> hide #!3 models

> show #!3 models

> hide #!3 models

> select clear

> select #2/B:78

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

268 atoms, 272 bonds, 37 residues, 1 model selected  

> select up

2116 atoms, 2174 bonds, 281 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel dark cyan

> color sel teal

> color sel slate gray

> color sel dim gray

> select clear

> select #2/B:318

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

207 atoms, 210 bonds, 33 residues, 1 model selected  

> select up

2116 atoms, 2174 bonds, 281 residues, 1 model selected  

> hide sel atoms

> select clear

> select #1/B:77

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

318 atoms, 323 bonds, 43 residues, 1 model selected  

> select up

2163 atoms, 2221 bonds, 290 residues, 1 model selected  

> hide sel atoms

> hide sel atoms

> select clear

> select clear

> select clear

> select clear

> select clear

> select clear

> select clear

> select #1/B:66

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

318 atoms, 323 bonds, 43 residues, 1 model selected  

> select up

2163 atoms, 2221 bonds, 290 residues, 1 model selected  

> select up

6573 atoms, 6753 bonds, 876 residues, 1 model selected  

> select up

19005 atoms, 19503 bonds, 2502 residues, 3 models selected  

> select up

19005 atoms, 19503 bonds, 2502 residues, 3 models selected  

> hide sel & #1-2 atoms

> hide sel & #1-2 atoms

> select clear

> select #1/B:66

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

318 atoms, 323 bonds, 43 residues, 1 model selected  

> select up

2163 atoms, 2221 bonds, 290 residues, 1 model selected  

> color sel gold

> color sel light gray

> select #2/B:79

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select clear

> preset cartoons/nucleotides cylinders/stubs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides stubs

  

> select clear

> select add #2/A:323

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select add #1/A:95

14 atoms, 12 bonds, 2 residues, 2 models selected  

> select add #1/C:87

19 atoms, 16 bonds, 3 residues, 2 models selected  

> select add #2/C:210

30 atoms, 27 bonds, 4 residues, 2 models selected  

> select up

912 atoms, 926 bonds, 128 residues, 2 models selected  

> select up

8558 atoms, 8790 bonds, 1142 residues, 2 models selected  

> hide sel cartoons

> select clear

> graphics silhouettes true

> lighting soft

> undo

> undo

> undo

> redo

> select up

13005 atoms, 13365 bonds, 1725 residues, 2 models selected  

> select up

19005 atoms, 19503 bonds, 2502 residues, 3 models selected  

> select up

19005 atoms, 19503 bonds, 2502 residues, 3 models selected  

> select up

19005 atoms, 19503 bonds, 2502 residues, 3 models selected  

> select down

13005 atoms, 13365 bonds, 1725 residues, 2 models selected  

> graphics silhouettes width 1

> select clear

> save /Users/zck761/Desktop/PAC8.0_4.0.png width 2000 height 1800 supersample
> 4

> save "/Users/zck761/Google Drive/My Drive/SNF/PAC_differentpHs.cxs"

——— End of log from Mon Oct 18 17:38:19 2021 ———

opened ChimeraX session  

> select add #1/B:87

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

318 atoms, 323 bonds, 43 residues, 1 model selected  

> select up

2163 atoms, 2221 bonds, 290 residues, 1 model selected  

> 7SQG

Unknown command: 7SQG  

> close session

> load 7SQG

Unknown command: load 7SQG  

> open 7SQG

Summary of feedback from opening 7SQG fetched from pdb  
---  
note | Fetching compressed mmCIF 7sqg from
http://files.rcsb.org/download/7sqg.cif  
  
7sqg title:  
Structure of the human proton-activated chloride channel ASOR in resting
conformation [more info...]  
  
Chain information for 7sqg #1  
---  
Chain | Description  
A B C | Proton-activated chloride channel  
  
Non-standard residues in 7sqg #1  
---  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> select /A:90

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

279 atoms, 284 bonds, 34 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 1 model selected  

> hide sel atoms

> preset cartoons/nucleotides cylinders/stubs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides stubs

  

> select clear

> select /B:323

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

235 atoms, 242 bonds, 33 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #f7ce83ff

> select add /C:308

2215 atoms, 2274 bonds, 275 residues, 1 model selected  

> select clear

> select /C:308

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

235 atoms, 242 bonds, 33 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> color sel #eff4faff

> color sel #eef4faff

> select clear

> select add /A:73

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

279 atoms, 284 bonds, 34 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> color sel #a9e2e7ff

> color sel #99e5e8ff

> color sel #99e5e8ff

> color sel #99e6e9ff

> color sel #99e6e9ff

> color sel #9ae7eaff

> color sel #9ae7ebff

> color sel #9ae8ebff

> color sel #9be9ecff

> color sel #9be9ecff

> color sel #9be9ecff

> color sel #9be9ecff

> color sel #9be9ecff

> color sel #9be9ecff

> color sel #9be9ecff

> color sel #9ceaedff

> color sel #9ceaedff

> color sel #9ceaedff

> color sel #9cebeeff

> color sel #9cebeeff

> color sel #9cebeeff

> color sel #9cebeeff

> color sel #9debeeff

> color sel #9debefff

> color sel #9debefff

> color sel #9debefff

> color sel #9decefff

> color sel #9decefff

> color sel #9decefff

> color sel #9decf0ff

> color sel #9eedf0ff

> color sel #9eeef1ff

> color sel #9feff2ff

> color sel #9feff2ff

> color sel #9feff3ff

> color sel #9ff0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f3ff

> color sel #a0f0f4ff

> color sel #a0f0f4ff

> color sel #a0f0f4ff

> color sel #a0f1f4ff

> color sel #a0f1f4ff

> color sel #a0f1f4ff

> color sel #a1f1f4ff

> color sel #a1f1f5ff

> color sel #a1f2f5ff

> color sel #a1f2f5ff

> color sel #a1f2f5ff

> color sel #a1f2f5ff

> color sel #a1f2f6ff

> color sel #a1f2f6ff

> color sel #a1f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> color sel #a2f3f6ff

> lighting soft

> lighting flat

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows true intensity 0.5

> lighting simple

> lighting soft

> lighting full

> lighting flat

> lighting full

> lighting shadows false

> color sel #a2f3f6ff

> color sel #a3f4f7ff

> color sel #a3f5f8ff

> color sel #a4f7faff

> color sel #a5f7fbff

> color sel #a5f8fbff

> color sel #a5f8fbff

> color sel #a5f8fbff

> color sel #a5f8fbff

> color sel #a5f8fcff

> color sel #a5f8fcff

> color sel #a5f8fcff

> color sel #a5f8fcff

> color sel #a5f8fcff

> color sel #a6f9fcff

> color sel #a6f9fcff

> color sel #a6f9fcff

> color sel #a6f9fdff

> color sel #a6f9fdff

> color sel #a6f9fdff

> color sel #a6f9fdff

> color sel #a7fafeff

> color sel #a7fbffff

> color sel #a7fcffff

> color sel #a7fbfeff

> color sel #a6fafdff

> color sel #a6f9fdff

> color sel #a6f9fcff

> color sel #a6f9fcff

> color sel #a5f8fbff

> color sel #a5f8fbff

> color sel #a4f7faff

> color sel #a4f6faff

> color sel #a4f6f9ff

> color sel #a4f6f9ff

> color sel #a3f5f9ff

> color sel #a3f5f9ff

> color sel #a3f5f8ff

> color sel #97e3e7ff

> color sel #91daddff

> color sel #84c6c9ff

> color sel #7bb8bbff

> color sel #78b3b6ff

> color sel #72acaeff

> color sel #72abadff

> color sel #71aaadff

> color sel #71aaacff

> color sel #70a8abff

> color sel #6da4a7ff

> color sel #6ca2a4ff

> color sel #6a9fa1ff

> color sel #699ea0ff

> color sel #699ea0ff

> color sel #699ea0ff

> color sel #699ea0ff

> color sel #6a9fa1ff

> color sel #6ca2a5ff

> color sel #6ea5a7ff

> color sel #72abadff

> color sel #75b0b3ff

> color sel #78b4b7ff

> color sel #7bb8bbff

> color sel #7dbbbeff

> color sel #7fbec1ff

> color sel #80c0c2ff

> color sel #80c0c3ff

> color sel #80c1c3ff

> color sel #80c1c3ff

> color sel #80c1c4ff

> color sel #81c1c4ff

> color sel #81c1c4ff

> color sel #81c2c4ff

> color sel #82c3c5ff

> color sel #82c3c6ff

> color sel #84c6c9ff

> color sel #87cacdff

> color sel #8acfd2ff

> color sel #8bd1d4ff

> color sel #8bd1d4ff

> color sel #8cd2d5ff

> color sel #8cd2d5ff

> color sel #8cd2d5ff

> color sel #8cd2d5ff

> color sel #8cd2d5ff

> color sel #8cd3d5ff

> color sel #8cd3d6ff

> color sel #8cd3d6ff

> color sel #8cd3d6ff

> color sel #8cd3d6ff

> color sel #8cd3d6ff

> color sel #8cd3d6ff

> color sel #8bd1d4ff

> color sel #8bd0d3ff

> color sel #88cdd0ff

> color sel #87cbceff

> color sel #86cacdff

> color sel #86c9ccff

> color sel #85c8caff

> color sel #84c6c9ff

> color sel #82c3c6ff

> color sel #81c1c4ff

> color sel #7ebdc0ff

> color sel #7bb9bcff

> color sel #7ab8baff

> color sel #78b4b6ff

> color sel #75b0b2ff

> color sel #74aeb0ff

> color sel #73acaeff

> color sel #70a8abff

> color sel #6fa7a9ff

> color sel #6ea6a8ff

> color sel #6ea5a8ff

> color sel #6ea5a8ff

> color sel #6ea5a7ff

> color sel #6ea5a7ff

> color sel #6ea5a7ff

> color sel #6ea5a7ff

> color sel #6ea5a8ff

> color sel #6fa7a9ff

> color sel #70a9a7ff

> color sel #70a9a7ff

> color sel #71a9a7ff

> color sel #73a9a7ff

> color sel #76a9a7ff

> color sel #77a9a7ff

> color sel #79a9a7ff

> color sel #7ca9a7ff

> color sel #7da9a7ff

> color sel #7fa9a7ff

> color sel #81a9a7ff

> color sel #82a9a7ff

> color sel #83a9a7ff

> color sel #85a9a7ff

> color sel #86a9a7ff

> color sel #87a9a7ff

> color sel #87a9a7ff

> color sel #88a9a7ff

> color sel #88a9a7ff

> color sel #89a9a7ff

> color sel #89a9a7ff

> color sel #8aa9a7ff

> color sel #8aa9a7ff

> color sel #8aa9a7ff

> color sel #8ba9a7ff

> color sel #8ca9a7ff

> color sel #8ca9a7ff

> color sel #8da9a7ff

> color sel #8da9a7ff

> color sel #8da9a7ff

> color sel #8ea9a7ff

> color sel #8ea9a7ff

> color sel #8fa9a7ff

> color sel #8fa9a7ff

> color sel #90a9a7ff

> color sel #90a9a7ff

> color sel #91a9a7ff

> color sel #91a9a7ff

> color sel #92a9a7ff

> color sel #92a9a7ff

> color sel #93a9a7ff

> color sel #94a9a7ff

> color sel #95a9a7ff

> color sel #96a9a7ff

> color sel #97a9a7ff

> color sel #97a9a7ff

> color sel #98a9a7ff

> color sel #98a9a7ff

> color sel #99a9a7ff

> color sel #99a9a7ff

> color sel #99a9a7ff

> color sel #9aa9a7ff

> color sel #9aa9a7ff

> color sel #9aa9a7ff

> color sel #9aa9a7ff

> color sel #99a9a7ff

> color sel #98a9a7ff

> color sel #97a9a7ff

> color sel #97a9a7ff

> color sel #96a9a7ff

> color sel #95a9a8ff

> color sel #94a9a8ff

> color sel #93a9a8ff

> color sel #8fa9a8ff

> color sel #8ea9a8ff

> color sel #8ca9a8ff

> color sel #8ba9a8ff

> color sel #8ba9a8ff

> color sel #8aa9a8ff

> color sel #8aa9a8ff

> color sel #89a9a8ff

> color sel #89a9a8ff

> color sel #88a9a8ff

> color sel #87a9a8ff

> color sel #87a9a8ff

> color sel #87a9a8ff

> color sel #87a9a8ff

> color sel #86a9a8ff

> color sel #86a9a8ff

> color sel #86a9a8ff

> color sel #85a9a8ff

> color sel #85a9a8ff

> color sel #85a9a8ff

> color sel #85a9a8ff

> color sel #84a9a8ff

> color sel #84a9a8ff

> color sel #83a9a8ff

> color sel #82a9a8ff

> color sel #82a9a8ff

> color sel #81a9a8ff

> color sel #81a9a8ff

> color sel #80a9a8ff

> color sel #7fa9a8ff

> color sel #7fa9a8ff

> color sel #7ea9a8ff

> color sel #7ea9a8ff

> color sel #7da9a8ff

> color sel #7ca9a8ff

> color sel #7ba9a8ff

> color sel #7aa9a8ff

> color sel #79a9a8ff

> color sel #79a9a8ff

> color sel #78a9a8ff

> color sel #78a9a8ff

> color sel #78a9a8ff

> color sel #7aacabff

> color sel #7fb3b1ff

> color sel #87bebdff

> color sel #8fcac9ff

> color sel #96d3d2ff

> color sel #9bdbdaff

> color sel #a0e1e0ff

> color sel #a2e4e2ff

> color sel #a4e7e5ff

> color sel #a8edebff

> color sel #a9eeedff

> color sel #abf1efff

> color sel #acf2f0ff

> color sel #acf2f1ff

> color sel #acf2f1ff

> color sel #acf2f1ff

> color sel #acf2f1ff

> color sel #acf2f0ff

> color sel #acf2f0ff

> color sel #acf2f0ff

> color sel #acf2f0ff

> color sel #abf2f0ff

> color sel #acf2f0ff

> color sel #acf2f0ff

> color sel #acf2f1ff

> color sel #acf3f1ff

> color sel #adf4f2ff

> color sel #aef5f3ff

> color sel #aff6f5ff

> color sel #b0f7f6ff

> color sel #b0f8f6ff

> color sel #b0f8f7ff

> color sel #b1f9f8ff

> color sel #b1faf8ff

> color sel #b1faf8ff

> color sel #b2faf1ff

> color sel #b3faf1ff

> color sel #b6faf1ff

> color sel #bafaf1ff

> color sel #befaf1ff

> color sel #c0faf0ff

> color sel #c3faf0ff

> color sel #c5faefff

> color sel #c7faefff

> color sel #cbfaefff

> color sel #cefaefff

> color sel #d1faefff

> color sel #d3faefff

> color sel #d4faefff

> color sel #d4faefff

> color sel #d4faefff

> color sel #d4faefff

> color sel #d4faeeff

> color sel #d5faeeff

> color sel #d5faeeff

> color sel #d6faeeff

> color sel #d6faeeff

> color sel #d6faeeff

> color sel #d7faeeff

> color sel #d7faeeff

> color sel #d7faeeff

> color sel #d8faeeff

> color sel #d8faeeff

> color sel #d8faeeff

> color sel #d9faeeff

> color sel #d9faedff

> color sel #d9faedff

> color sel #dafaedff

> color sel #dafaedff

> color sel #dafaedff

> color sel #dafaeeff

> color sel #dbfaeeff

> color sel #dbfaefff

> color sel #dafaefff

> color sel #dafaefff

> color sel #dafaf0ff

> color sel #d9faf1ff

> color sel #d9faf1ff

> color sel #d9faf2ff

> color sel #dafaf4ff

> color sel #dafaf5ff

> color sel #dafaf6ff

> color sel #dafaf8ff

> color sel #dafaf9ff

> color sel #dafaf9ff

> color sel #dafafaff

> color sel #daf9faff

> color sel #daf9faff

> select clear

> select add /B:75

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> color sel #ffffaaff

> color sel #fffba2ff

> color sel #fffba2ff

> color sel #fffba5ff

> color sel #fffba9ff

> color sel #fffcacff

> color sel #fffcaeff

> color sel #fffcafff

> color sel #fffdb1ff

> color sel #fffdb1ff

> color sel #fffdb2ff

> color sel #fffeb5ff

> color sel #fffeb7ff

> color sel #ffffb9ff

> color sel #feffbbff

> color sel #feffbbff

> color sel #feffbbff

> color sel #feffbcff

> color sel #fdffbeff

> color sel #fdffbfff

> color sel #fdffc0ff

> color sel #fcffc1ff

> color sel #fcffc2ff

> color sel #fbffc3ff

> color sel #fcffc3ff

> color sel #fbffc4ff

> color sel #fbffc3ff

> color sel #faffc1ff

> color sel #f9ffbfff

> color sel #f8ffbfff

> color sel #f9ffbeff

> color sel #f9ffbeff

> color sel #f8ffbdff

> color sel #f8ffbcff

> color sel #f8ffbcff

> color sel #f8ffbbff

> color sel #f7ffbbff

> color sel #f7ffbaff

> select clear

> select /B:90

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> color sel #f9ffafff

> color sel #f9ffb0ff

> color sel #faffb1ff

> color sel #fbffb1ff

> color sel #fcffb1ff

> color sel #fcffb2ff

> color sel #fdffb2ff

> color sel #fdffb3ff

> color sel #feffb3ff

> color sel #feffb3ff

> color sel #feffb4ff

> color sel #ffffb4ff

> color sel #ffffb4ff

> color sel #fffeb5ff

> color sel #fffeb5ff

> color sel #fffeb5ff

> color sel #fffeb5ff

> color sel #fffdb5ff

> color sel #fffdb6ff

> color sel #fffdb6ff

> color sel #fffdb6ff

> color sel #fffcb7ff

> color sel #fffcb7ff

> color sel #fffcb7ff

> color sel #fffbb7ff

> color sel #fffbb7ff

> color sel #fffbb8ff

> color sel #fffbb8ff

> color sel #fffab8ff

> color sel #fffab9ff

> color sel #fffab9ff

> color sel #fff9baff

> color sel #fff8baff

> color sel #fff7baff

> color sel #fff7bbff

> color sel #fff6bbff

> color sel #fff5bcff

> color sel #fff4bdff

> color sel #fff3beff

> color sel #fff3beff

> color sel #fff3beff

> color sel #fff2beff

> color sel #fff2bfff

> color sel #fff2bfff

> color sel #fff2c0ff

> color sel #fff1c0ff

> color sel #fff1c1ff

> color sel #fff0c1ff

> color sel #fff0c2ff

> color sel #fff0c2ff

> color sel #ffefc3ff

> color sel #ffefc3ff

> color sel #ffefc3ff

> color sel #ffefc4ff

> color sel #ffefc4ff

> color sel #ffedc6ff

> color sel #ffedc6ff

> color sel #ffecc7ff

> color sel #ffecc7ff

> color sel #ffebc7ff

> color sel #ffeac6ff

> color sel #ffeac6ff

> color sel #ffeac7ff

> color sel #ffe9c6ff

> color sel #ffe9c6ff

> color sel #ffe9c6ff

> color sel #ffe8c7ff

> color sel #ffe8c6ff

> select clear

> select /B:318

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

235 atoms, 242 bonds, 33 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 1 model selected  

> lighting flat

> select clear

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> view orient

> view orient

> view orient

> view

> view

> select clear

> select ::name="CYS"

72 atoms, 60 bonds, 12 residues, 1 model selected  

> select clear

> select /C:223

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select 273

Expected an objects specifier or a keyword  

> style sel stick

Changed 6 atom styles  

> show sel atoms

> color sel red target a

> select 273

Expected an objects specifier or a keyword  

> select :273

15 atoms, 12 bonds, 3 residues, 1 model selected  

> select :223

18 atoms, 15 bonds, 3 residues, 1 model selected  

> color sel red target a

> show sel cartoons

> show sel atoms

> color sel red target ac

> select clear

> select add /B:77

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 1 model selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 1 model selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 1 model selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 1 model selected  

> show sel surfaces

> lighting soft

> select subtract /A:211@CA

6629 atoms, 6810 bonds, 822 residues, 4 models selected  

> select subtract /A:254@O

6628 atoms, 6810 bonds, 822 residues, 4 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 4 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 4 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 4 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 4 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 4 models selected  

> hide sel surfaces

> style sel sphere

Changed 6630 atom styles  

> show sel atoms

> lighting soft

> lighting full

> lighting soft

> lighting simple

> lighting flat

> lighting full

> lighting shadows false

> ui tool show "Side View"

> lighting full

> lighting soft

> lighting shadows true intensity 0.5

> preset cartoons/nucleotides cylinders/stubs

Changed 6462 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides stubs

  

> select subtract /B:80

6623 atoms, 6804 bonds, 821 residues, 4 models selected  

> select clear

> select add /B:73

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #f6ce81ff

> hide sel atoms

> select clear

> select add /C:332

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

235 atoms, 242 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #e4aa71ff

> select clear

> color #efa767ff

> color #eea767ff

> color #eea767ff

> color #e8a364ff

> color #e7a264ff

> color #e7a263ff

> color #e39f62ff

> color #e39f62ff

> color #e29f62ff

> color #e29f62ff

> color #e29f62ff

> color #e29f61ff

> color #db995eff

> color #da995eff

> color #da995eff

> color #da995eff

> color #da995eff

> color #da995eff

> color #da995eff

> color #db9a5fff

> color #dc9b5fff

> color #e09d60ff

> color #e4a062ff

> color #e6a163ff

> color #e7a264ff

> color #e8a264ff

> color #eaa465ff

> color #eaa465ff

> color #eaa465ff

> color #eaa465ff

> color #eaa465ff

> select clear

> select add /C:67

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #e39f62ff

> select clear

> select add /B:80

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #f7ce82ff

> select clear

> select /A:333

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

235 atoms, 242 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #ab7563ff

> select clear

> color #b47361ff

> color #b47361ff

> color #b47362ff

> undo

> select /C:67

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 2 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 4 models selected  

> hide sel atoms

> select clear

> select add /C:66

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #f6ce81ff

> select clear

> select add /B:70

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #e4aa70ff

> color (#!1 & sel) #efa464ff

> color (#!1 & sel) #efa464ff

> color (#!1 & sel) #eea464ff

> color (#!1 & sel) #eea464ff

> color (#!1 & sel) #eea464ff

> color (#!1 & sel) #eda363ff

> color (#!1 & sel) #eda363ff

> color (#!1 & sel) #eca263ff

> color (#!1 & sel) #eca263ff

> color (#!1 & sel) #eca263ff

> color (#!1 & sel) #eba262ff

> color (#!1 & sel) #eba262ff

> color (#!1 & sel) #eba162ff

> select clear

> select /A:324

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

235 atoms, 242 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #d19e64ff

> color (#!1 & sel) #da9a58ff

> color (#!1 & sel) #da9a58ff

> color (#!1 & sel) #da9a58ff

> color (#!1 & sel) #d69757ff

> color (#!1 & sel) #d49656ff

> color (#!1 & sel) #d39555ff

> color (#!1 & sel) #d39555ff

> color (#!1 & sel) #d19355ff

> color (#!1 & sel) #cf9254ff

> color (#!1 & sel) #ce9153ff

> color (#!1 & sel) #cd9153ff

> color (#!1 & sel) #cd9153ff

> color (#!1 & sel) #cd9053ff

> color (#!1 & sel) #c88d51ff

> color (#!1 & sel) #c48a4fff

> color (#!1 & sel) #c48a4fff

> color (#!1 & sel) #c48a4fff

> color (#!1 & sel) #c1884eff

> color (#!1 & sel) #c0874eff

> color (#!1 & sel) #bd854dff

> color (#!1 & sel) #b27e48ff

> color (#!1 & sel) #aa7845ff

> select clear

> lighting soft

> select add /A:72

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select add /B:322

20 atoms, 19 bonds, 2 residues, 2 models selected  

> select up

514 atoms, 526 bonds, 67 residues, 3 models selected  

> select up

4420 atoms, 4540 bonds, 548 residues, 3 models selected  

> surface (#!1 & sel)

> select clear

> lighting flat

> select /C:87

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /A:82@O

1 atom, 1 residue, 1 model selected  

> select /B:324@CB

1 atom, 1 residue, 1 model selected  

> select up

5 atoms, 4 bonds, 1 residue, 2 models selected  

> select add /A:78@C

6 atoms, 4 bonds, 2 residues, 2 models selected  

> select up

13 atoms, 11 bonds, 2 residues, 3 models selected  

> select up

514 atoms, 526 bonds, 67 residues, 3 models selected  

> select up

4420 atoms, 4540 bonds, 548 residues, 3 models selected  

> surface hidePatches (#!1 & sel)

> select clear

> select add /C:81

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select add /B:306

12 atoms, 10 bonds, 2 residues, 2 models selected  

> select up

507 atoms, 519 bonds, 66 residues, 3 models selected  

> select up

4420 atoms, 4540 bonds, 548 residues, 3 models selected  

> surface (#!1 & sel)

> select clear

> graphics silhouettes false

> graphics silhouettes true

> select add /B:69@CD1

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 2 models selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 2 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 4 models selected  

> lighting soft

> select clear

> lighting full

> lighting shadows false

> select clear

> select clear

> select clear

> select add /C:330@CH2

1 atom, 1 residue, 1 model selected  

> select add /B:75@CB

2 atoms, 2 residues, 2 models selected  

> select up

22 atoms, 22 bonds, 2 residues, 3 models selected  

> select up

507 atoms, 519 bonds, 66 residues, 3 models selected  

> select up

4420 atoms, 4540 bonds, 548 residues, 3 models selected  

> select clear

> select add /B:78@C

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 2 models selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #ffb668ff

> color (#!1 & sel) #ffb66884

> select clear

> select add /C:178@NZ

1 atom, 1 residue, 1 model selected  

> select up

9 atoms, 8 bonds, 1 residue, 2 models selected  

> select up

67 atoms, 67 bonds, 8 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #fed47fff

> color (#!1 & sel) #fed47f7f

> color (#!1 & sel) #fed47f80

> color (#!1 & sel) #fed47f84

> color (#!1 & sel) #fed47f85

> color (#!1 & sel) #fed47f85

> color (#!1 & sel) #fed47f85

> color (#!1 & sel) #fed47f85

> color (#!1 & sel) #fed47f86

> color (#!1 & sel) #fed47f85

> color (#!1 & sel) #fed47f80

> color (#!1 & sel) #fed47f7a

> color (#!1 & sel) #fed47f71

> color (#!1 & sel) #fed47f6e

> color (#!1 & sel) #fed47f6c

> color (#!1 & sel) #fed47f66

> color (#!1 & sel) #fed47f62

> color (#!1 & sel) #fed47f60

> color (#!1 & sel) #fed47f60

> color (#!1 & sel) #fed47f5f

> color (#!1 & sel) #fed47f5f

> color (#!1 & sel) #fed47f5f

> color (#!1 & sel) #fed47f5f

> color (#!1 & sel) #fed47f5f

> color (#!1 & sel) #fed47f5f

> color (#!1 & sel) #fed47f61

> color (#!1 & sel) #fed47f63

> color (#!1 & sel) #fed47f63

> color (#!1 & sel) #fed47f63

> color (#!1 & sel) #fed47f63

> color (#!1 & sel) #fed47f64

> color (#!1 & sel) #fed47f64

> color (#!1 & sel) #fed47f66

> color (#!1 & sel) #fed47f67

> color (#!1 & sel) #fed47f6b

> color (#!1 & sel) #fed47f6d

> color (#!1 & sel) #fed47f6e

> color (#!1 & sel) #fed47f6e

> color (#!1 & sel) #fed47f6e

> color (#!1 & sel) #fed47f6e

> color (#!1 & sel) #fed47f6e

> select clear

> select clear

> select /C:330@CE3

1 atom, 1 residue, 1 model selected  

> select up

14 atoms, 15 bonds, 1 residue, 2 models selected  

> select clear

> select /B:65@O

1 atom, 1 residue, 1 model selected  

> select up

7 atoms, 6 bonds, 1 residue, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #feb4676e

> color (#!1 & sel) #e2a05c6e

> color (#!1 & sel) #d597566e

> color (#!1 & sel) #c2894f6e

> color (#!1 & sel) #cc90526e

> color (#!1 & sel) #cc7c306e

> select clear

> select :223/A

2222 atoms, 2280 bonds, 276 residues, 1 model selected  

> select /A:223

6 atoms, 5 bonds, 1 residue, 1 model selected  

> show sel atoms

> color (#!1 & sel) red

> style sel sphere

Changed 6 atom styles  

> select clear

> save /Users/zck761/Desktop/image3.png supersample 3

> select add /A:70

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

279 atoms, 284 bonds, 34 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel orange

> select clear

> select add /A:76

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

279 atoms, 284 bonds, 34 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color sel byelement

> color sel orange

> color (#!1 & sel) #cb7c306e

> color (#!1 & sel) #ca7b306e

> color (#!1 & sel) #c5782f6e

> color (#!1 & sel) #c5782f6e

> color (#!1 & sel) #c4782f6e

> color (#!1 & sel) #c4772f6e

> color (#!1 & sel) #c3772e6e

> color (#!1 & sel) #c3772e6e

> color (#!1 & sel) #c3772e6e

> color (#!1 & sel) #c3772e6e

> color (#!1 & sel) #c3772e6e

> color (#!1 & sel) #c3772e6e

> color (#!1 & sel) #c5782f6e

> color (#!1 & sel) #c5782f6e

> color (#!1 & sel) #c6792f6e

> color (#!1 & sel) #c6792f6e

> color (#!1 & sel) #c6792f6e

> color (#!1 & sel) #c6792f77

> color (#!1 & sel) #c6792f9c

> color (#!1 & sel) #c6792fbc

> color (#!1 & sel) #c6792fde

> color (#!1 & sel) #c6792fff

> select clear

> select add /A:223@CA

1 atom, 1 residue, 1 model selected  

> select up

6 atoms, 5 bonds, 1 residue, 2 models selected  

> color sel red

> select clear

> select clear

> save /Users/zck761/Desktop/image4.png supersample 3

> save "/Volumes/GoogleDrive/My
> Drive/Applications/SNF/PAC_activated_presentation.cxs"

> select /A:309

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:94

9 atoms, 8 bonds, 1 residue, 1 model selected  

> ui tool show "Show Sequence Viewer"

> sequence chain /A /B /C

Alignment identifier is 1  

> select
> /A-C:100-107,115-119,124-132,147-148,151-157,165-172,181-189,198-204,229-233,236-248,254-266,279-287,291-298

2634 atoms, 2664 bonds, 309 residues, 1 model selected  

> select
> /A-C:100-107,115-119,124-132,147-148,151-157,165-172,181-189,198-204,229-233,236-248,254-266,279-287,291-298

2634 atoms, 2664 bonds, 309 residues, 1 model selected  

> select
> /A-C:100-157,165-172,181-189,198-204,229-233,236-248,254-266,279-287,291-298

3216 atoms, 3279 bonds, 390 residues, 1 model selected  

> select clear

> ui tool show "Color Actions"

Back buffer dpr of 1 doesn't match <_NSViewBackingLayer: 0x600025e66d60>
contents scale of 2 - updating layer to match.  

> select add /C:308@CB

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:315

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

235 atoms, 242 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> surface (#!1 & sel)

> select clear

> select add /C:147@CE

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 2 models selected  

> select up

16 atoms, 15 bonds, 2 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel burly wood

> select clear

> select add /B:142@CA

1 atom, 1 residue, 1 model selected  

> select up

4 atoms, 3 bonds, 1 residue, 2 models selected  

> select up

98 atoms, 101 bonds, 14 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color sel gold

> color sel orange

> color sel gold

> color (#!1 & sel) #c66d33ff

> color (#!1 & sel) #c6782aff

> color (#!1 & sel) #c67b27ff

> color (#!1 & sel) #c67d25ff

> color (#!1 & sel) #c67f24ff

> color (#!1 & sel) #c6831fff

> color (#!1 & sel) #c6841fff

> color (#!1 & sel) #c6841eff

> color (#!1 & sel) #c6851eff

> color (#!1 & sel) #c6851dff

> color (#!1 & sel) #c6861dff

> color (#!1 & sel) #c6871dff

> color (#!1 & sel) #c6891eff

> color (#!1 & sel) #c6891fff

> color (#!1 & sel) #c68b20ff

> color (#!1 & sel) #c69025ff

> color (#!1 & sel) #c69126ff

> color (#!1 & sel) #c69b18ff

> color (#!1 & sel) #c69d13ff

> color (#!1 & sel) #c69d0dff

> color (#!1 & sel) #c69e0dff

> color (#!1 & sel) #c6a10eff

> color (#!1 & sel) #c6a50eff

> color (#!1 & sel) #c6a60eff

> color (#!1 & sel) #c6a70cff

> color (#!1 & sel) #c6ad02ff

> color (#!1 & sel) #c6ad02ff

> color (#!1 & sel) #c6ad02ff

> color (#!1 & sel) #c6ae04ff

> color (#!1 & sel) #c6ad05ff

> color (#!1 & sel) #c6ad06ff

> color (#!1 & sel) #c6aa07ff

> color (#!1 & sel) #c6a707ff

> color (#!1 & sel) #c6a406ff

> color (#!1 & sel) #c6a306ff

> color (#!1 & sel) #c6a105ff

> color (#!1 & sel) #c69d02ff

> color (#!1 & sel) #c69c00ff

> color (#!1 & sel) #c69a00ff

> color (#!1 & sel) #c69800ff

> color (#!1 & sel) #c69600ff

> color (#!1 & sel) #c69400ff

> color (#!1 & sel) #c69200ff

> color (#!1 & sel) #c69100ff

> color (#!1 & sel) #c68d00ff

> color (#!1 & sel) #c6881dff

> color (#!1 & sel) #c68820ff

> color (#!1 & sel) #c68821ff

> color (#!1 & sel) #c68821ff

> color (#!1 & sel) #c68822ff

> color (#!1 & sel) #c68821ff

> color (#!1 & sel) #c68a1fff

> color (#!1 & sel) #c68d10ff

> color (#!1 & sel) #c68d0cff

> color (#!1 & sel) #c68c0aff

> color (#!1 & sel) #c68b05ff

> color (#!1 & sel) #c68b01ff

> color (#!1 & sel) #c68d00ff

> color (#!1 & sel) #c68f00ff

> color (#!1 & sel) #c69100ff

> color (#!1 & sel) #c69200ff

> color (#!1 & sel) #c69400ff

> color (#!1 & sel) #c69800ff

> color (#!1 & sel) #c69a00ff

> color (#!1 & sel) #c69c00ff

> color (#!1 & sel) #c69e00ff

> color (#!1 & sel) #c69e00ff

> color (#!1 & sel) #d4a900ff

> color (#!1 & sel) #daae00ff

> color (#!1 & sel) #dbaf00ff

> color (#!1 & sel) #dcaf00ff

> color (#!1 & sel) #dcb000ff

> color (#!1 & sel) #dcb000ff

> color (#!1 & sel) #dcaf00ff

> color (#!1 & sel) #dcaf00ff

> color (#!1 & sel) #dbaf00ff

> color (#!1 & sel) #dbaf00ff

> color (#!1 & sel) #daae00ff

> color (#!1 & sel) #daae00ff

> color (#!1 & sel) #dab105ff

> color (#!1 & sel) #daad0dff

> color (#!1 & sel) #daac17ff

> color (#!1 & sel) #daa73bff

> color (#!1 & sel) #daa73cff

> color (#!1 & sel) #daa73dff

> color (#!1 & sel) #daa941ff

> color (#!1 & sel) #daab53ff

> color (#!1 & sel) #daaa55ff

> color (#!1 & sel) #daa858ff

> color (#!1 & sel) #daa859ff

> color (#!1 & sel) #daa859ff

> color (#!1 & sel) #daa65bff

> color (#!1 & sel) #daa55cff

> color (#!1 & sel) #daa45dff

> color (#!1 & sel) #daa45dff

> color (#!1 & sel) #daa65cff

> color (#!1 & sel) #daa65cff

> color (#!1 & sel) #daa85aff

> color (#!1 & sel) #daa85aff

> color (#!1 & sel) #daaa59ff

> color (#!1 & sel) #daad57ff

> color (#!1 & sel) #daae56ff

> color (#!1 & sel) #dab154ff

> color (#!1 & sel) #dab253ff

> color (#!1 & sel) #dab352ff

> color (#!1 & sel) #dab452ff

> color (#!1 & sel) #dab550ff

> color (#!1 & sel) #dab64eff

> color (#!1 & sel) #dab74dff

> color (#!1 & sel) #daba49ff

> color (#!1 & sel) #dabc45ff

> color (#!1 & sel) #dabe43ff

> color (#!1 & sel) #dabf3eff

> color (#!1 & sel) #dac03aff

> color (#!1 & sel) #dac039ff

> color (#!1 & sel) #dac038ff

> color (#!1 & sel) #dac138ff

> color (#!1 & sel) #dac138ff

> color (#!1 & sel) #dac137ff

> color (#!1 & sel) #dac137ff

> color (#!1 & sel) #dac136ff

> color (#!1 & sel) #dac334ff

> color (#!1 & sel) #dac431ff

> color (#!1 & sel) #dac62aff

> color (#!1 & sel) #dac727ff

> color (#!1 & sel) #dac823ff

> color (#!1 & sel) #dac823ff

> color (#!1 & sel) #dac923ff

> color (#!1 & sel) #dacb23ff

> color (#!1 & sel) #dacf25ff

> color (#!1 & sel) #dacf25ff

> color (#!1 & sel) #dacf26ff

> color (#!1 & sel) #dace28ff

> color (#!1 & sel) #dac931ff

> color (#!1 & sel) #dac832ff

> color (#!1 & sel) #dac635ff

> color (#!1 & sel) #dac537ff

> color (#!1 & sel) #dac537ff

> color (#!1 & sel) #dac439ff

> color (#!1 & sel) #dac33aff

> color (#!1 & sel) #dac23cff

> color (#!1 & sel) #dac13dff

> color (#!1 & sel) #dac03fff

> color (#!1 & sel) #dac03fff

> color (#!1 & sel) #dac040ff

> color (#!1 & sel) #dac040ff

> color (#!1 & sel) #dac43dff

> color (#!1 & sel) #dac63aff

> color (#!1 & sel) #dac839ff

> color (#!1 & sel) #dac838ff

> color (#!1 & sel) #dac937ff

> color (#!1 & sel) #dac937ff

> color (#!1 & sel) #daca35ff

> color (#!1 & sel) #dacb32ff

> color (#!1 & sel) #dacd2fff

> color (#!1 & sel) #dace2fff

> color (#!1 & sel) #dacd2fff

> color (#!1 & sel) #dacd30ff

> color (#!1 & sel) #dacc31ff

> color (#!1 & sel) #dacb32ff

> color (#!1 & sel) #daca33ff

> color (#!1 & sel) #dac934ff

> color (#!1 & sel) #dac835ff

> color (#!1 & sel) #dac835ff

> color (#!1 & sel) #dac737ff

> color (#!1 & sel) #dac438ff

> color (#!1 & sel) #dac439ff

> color (#!1 & sel) #dac23bff

> color (#!1 & sel) #dac13cff

> color (#!1 & sel) #dac03cff

> color (#!1 & sel) #dac03dff

> color (#!1 & sel) #dabf3eff

> color (#!1 & sel) #dabf3eff

> color (#!1 & sel) #dabe3fff

> color (#!1 & sel) #dabe40ff

> color (#!1 & sel) #dabd41ff

> color (#!1 & sel) #dabc42ff

> color (#!1 & sel) #dabc42ff

> color (#!1 & sel) #dabb44ff

> color (#!1 & sel) #daba45ff

> color (#!1 & sel) #daba46ff

> color (#!1 & sel) #dab946ff

> color (#!1 & sel) #dab947ff

> color (#!1 & sel) #dab947ff

> color (#!1 & sel) #daba47ff

> color (#!1 & sel) #daba47ff

> color (#!1 & sel) #dabc46ff

> color (#!1 & sel) #dabd45ff

> color (#!1 & sel) #dabe44ff

> color (#!1 & sel) #dabe44ff

> color (#!1 & sel) #dabe43ff

> color (#!1 & sel) #dabf42ff

> color (#!1 & sel) #dac041ff

> color (#!1 & sel) #dac040ff

> color (#!1 & sel) #dac13fff

> color (#!1 & sel) #dac642ff

> color (#!1 & sel) #dac743ff

> color (#!1 & sel) #dac647ff

> color (#!1 & sel) #dac548ff

> color (#!1 & sel) #dac548ff

> color (#!1 & sel) #dac34aff

> color (#!1 & sel) #dac24cff

> color (#!1 & sel) #dac24dff

> color (#!1 & sel) #dac24eff

> color (#!1 & sel) #dac24eff

> color (#!1 & sel) #dac24eff

> select clear

> select clear

> select clear

> select add /B:69@CA

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 2 models selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #dac445ff

> color (#!1 & sel) #dac445ff

> color (#!1 & sel) #dac248ff

> color (#!1 & sel) #dac248ff

> color (#!1 & sel) #dac046ff

> color (#!1 & sel) #dabb44ff

> color (#!1 & sel) #dab745ff

> color (#!1 & sel) #dab644ff

> color (#!1 & sel) #dab444ff

> select clear

> select add /C:106@NZ

1 atom, 1 residue, 1 model selected  

> select up

9 atoms, 8 bonds, 1 residue, 2 models selected  

> select up

64 atoms, 64 bonds, 8 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #87da46ff

> color (#!1 & sel) #88da47ff

> color (#!1 & sel) #9eda72ff

> color (#!1 & sel) #a7da82ff

> color (#!1 & sel) #a9da85ff

> color (#!1 & sel) #a0da88ff

> color (#!1 & sel) #9cda8aff

> color (#!1 & sel) #9ada8eff

> color (#!1 & sel) #92da8dff

> color (#!1 & sel) #8ada8bff

> color (#!1 & sel) #88da8cff

> color (#!1 & sel) #7ada91ff

> color (#!1 & sel) #77da92ff

> color (#!1 & sel) #77da92ff

> color (#!1 & sel) #77da92ff

> color (#!1 & sel) #76da92ff

> color (#!1 & sel) #76da92ff

> color (#!1 & sel) #75da92ff

> color (#!1 & sel) #75da93ff

> color (#!1 & sel) #75da93ff

> color (#!1 & sel) #77da9aff

> color (#!1 & sel) #73dab0ff

> color (#!1 & sel) #6cdac0ff

> color (#!1 & sel) #68dac4ff

> color (#!1 & sel) #60dacfff

> color (#!1 & sel) #60dacfff

> color (#!1 & sel) #5fdacfff

> color (#!1 & sel) #5cdabeff

> color (#!1 & sel) #54daa7ff

> color (#!1 & sel) #54daa5ff

> color (#!1 & sel) #52da97ff

> color (#!1 & sel) #51da94ff

> color (#!1 & sel) #51da93ff

> color (#!1 & sel) #50da91ff

> color (#!1 & sel) #45da86ff

> color (#!1 & sel) #3fda87ff

> color (#!1 & sel) #3ada92ff

> color (#!1 & sel) #38da9bff

> color (#!1 & sel) #35daa2ff

> color (#!1 & sel) #34daa2ff

> color (#!1 & sel) #33daa2ff

> color (#!1 & sel) #32daa8ff

> color (#!1 & sel) #39dab2ff

> color (#!1 & sel) #44dabdff

> color (#!1 & sel) #47dac2ff

> color (#!1 & sel) #49dac8ff

> color (#!1 & sel) #4edaceff

> color (#!1 & sel) #53dad4ff

> color (#!1 & sel) #5cdad9ff

> color (#!1 & sel) #5fd8daff

> color (#!1 & sel) #5fd8daff

> color (#!1 & sel) #61d8daff

> color (#!1 & sel) #64d8daff

> color (#!1 & sel) #66d8daff

> color (#!1 & sel) #6ed9daff

> color (#!1 & sel) #77dad5ff

> color (#!1 & sel) #87dacbff

> color (#!1 & sel) #87dacbff

> color (#!1 & sel) #8adac8ff

> color (#!1 & sel) #90dabbff

> color (#!1 & sel) #93dab2ff

> color (#!1 & sel) #93daabff

> color (#!1 & sel) #93daa8ff

> color (#!1 & sel) #93daa7ff

> color (#!1 & sel) #93daa7ff

> color (#!1 & sel) #92daacff

> color (#!1 & sel) #90dab1ff

> color (#!1 & sel) #8adab2ff

> color (#!1 & sel) #8adab2ff

> color (#!1 & sel) #83dab2ff

> color (#!1 & sel) #7fdab2ff

> color (#!1 & sel) #d4da98ff

> color (#!1 & sel) #d4da98ff

> color (#!1 & sel) #d4da98ff

> color (#!1 & sel) #d5da98ff

> color (#!1 & sel) #d7da98ff

> color (#!1 & sel) #d8da98ff

> color (#!1 & sel) #d8da98ff

> color (#!1 & sel) #d8da98ff

> color (#!1 & sel) #d9da97ff

> color (#!1 & sel) #dad095ff

> color (#!1 & sel) #dacd92ff

> color (#!1 & sel) #daca90ff

> color (#!1 & sel) #dac98fff

> color (#!1 & sel) #dac88fff

> color (#!1 & sel) #dac88fff

> color (#!1 & sel) #dac48bff

> color (#!1 & sel) #dac38bff

> color (#!1 & sel) #dac38aff

> color (#!1 & sel) #dac28aff

> select clear

> select add /B:82@CB

1 atom, 1 residue, 1 model selected  

> select up

7 atoms, 6 bonds, 1 residue, 2 models selected  

> select up

272 atoms, 277 bonds, 33 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> color (#!1 & sel) #dabd80ff

> color (#!1 & sel) #dabe80ff

> color (#!1 & sel) #dac178ff

> color (#!1 & sel) #dac34bff

> color (#!1 & sel) #dac342ff

> color (#!1 & sel) #dac441ff

> color (#!1 & sel) #dac43dff

> color (#!1 & sel) #dac43aff

> color (#!1 & sel) #dac43aff

> color (#!1 & sel) #dac538ff

> color (#!1 & sel) #dac52fff

> color (#!1 & sel) #dac62aff

> color (#!1 & sel) #dac91dff

> color (#!1 & sel) #dac91dff

> color (#!1 & sel) #dac91dff

> color (#!1 & sel) #dac620ff

> color (#!1 & sel) #dac124ff

> color (#!1 & sel) #daba2cff

> color (#!1 & sel) #dab437ff

> color (#!1 & sel) #daaf40ff

> color (#!1 & sel) #daab48ff

> color (#!1 & sel) #daa64fff

> color (#!1 & sel) #daa54fff

> color (#!1 & sel) #daa451ff

> color (#!1 & sel) #daa453ff

> color (#!1 & sel) #daa353ff

> color (#!1 & sel) #daa454ff

> color (#!1 & sel) #daa455ff

> color (#!1 & sel) #daa455ff

> color (#!1 & sel) #daa555ff

> color (#!1 & sel) #daa554ff

> color (#!1 & sel) #daa752ff

> color (#!1 & sel) #daab4cff

> color (#!1 & sel) #daac45ff

> color (#!1 & sel) #daac43ff

> color (#!1 & sel) #daad43ff

> color (#!1 & sel) #dab046ff

> color (#!1 & sel) #dab247ff

> color (#!1 & sel) #dab447ff

> color (#!1 & sel) #dab447ff

> color (#!1 & sel) #dab348ff

> color (#!1 & sel) #dab24aff

> color (#!1 & sel) #daaf4dff

> color (#!1 & sel) #daaf4eff

> select clear

> select add /A:208@NE2

1 atom, 1 residue, 1 model selected  

> select up

9 atoms, 8 bonds, 1 residue, 2 models selected  

> select up

63 atoms, 64 bonds, 7 residues, 2 models selected  

> select up

2210 atoms, 2270 bonds, 274 residues, 2 models selected  

> select up

6630 atoms, 6810 bonds, 822 residues, 2 models selected  

> surface hidePatches (#!1 & sel)

> close session

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 932, in <lambda>  
close_action.triggered.connect(lambda *, s=self, sess=session:
s.file_close_cb(sess))  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 652, in file_close_cb  
run(session, 'close session')  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/std_commands/close.py", line 60, in close_session  
session.reset()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 529, in reset  
sm.reset_state(container, self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/manager.py", line 252, in reset_state  
alignment._destroy()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 603, in _destroy  
self._notify_observers(self.NOTE_DESTROYED, None)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 652, in _notify_observers  
recipient.alignment_notification(note_name, note_data)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 474, in alignment_notification  
self.delete()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 512, in delete  
ToolInstance.delete(self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 154, in delete  
self.session.ui.remove_tool(self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 345, in remove_tool  
self.main_window.remove_tool(tool_instance)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 725, in remove_tool  
tw._destroy()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2049, in _destroy  
self.__toolkit.destroy()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 2189, in destroy  
sbar.destroy()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/statusbar.py", line 51, in destroy  
v.delete()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 438, in delete  
self.make_current()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 478, in make_current  
return self._opengl_context.make_current()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 99, in make_current  
qc = self._initialize_context()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context  
qc.setScreen(self._screen)  
RuntimeError: wrapped C/C++ object of type QScreen has been deleted  
  
RuntimeError: wrapped C/C++ object of type QScreen has been deleted  
  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context  
qc.setScreen(self._screen)  
  
See log for complete Python traceback.  
  

> open "/Volumes/GoogleDrive/My Drive/Applications/SNF/overlayASIC_PAC.cxs"

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 679, in restore  
self.reset()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 529, in reset  
sm.reset_state(container, self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 292, in reset_state  
tool_inst.delete()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 507, in delete  
self.alignment.detach_viewer(self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 379, in detach_viewer  
self.viewers.remove(viewer)  
ValueError: list.remove(x): x not in list  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 679, in restore  
self.reset()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 529, in reset  
sm.reset_state(container, self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 292, in reset_state  
tool_inst.delete()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 507, in delete  
self.alignment.detach_viewer(self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 379, in detach_viewer  
self.viewers.remove(viewer)  
ValueError: list.remove(x): x not in list  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 261, in event  
_open_dropped_file(self.session, event.file())  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 1812, in _open_dropped_file  
run(session, 'open %s' % FileNameArg.unparse(path))  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/open_command/cmd.py", line 118, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/open_command/cmd.py", line 179, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/open_command/cmd.py", line 422, in collated_open  
return func(*func_args, **func_kw)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core_formats/__init__.py", line 26, in open  
return cxs_open(session, data, **kw)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 982, in open  
session.restore(stream, path=path, resize_window=resize_window)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 721, in restore  
self.reset()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/session.py", line 529, in reset  
sm.reset_state(container, self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/tools.py", line 292, in reset_state  
tool_inst.delete()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seq-view/tool.py", line 507, in delete  
self.alignment.detach_viewer(self)  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 379, in detach_viewer  
self.viewers.remove(viewer)  
ValueError: list.remove(x): x not in list  
  
ValueError: list.remove(x): x not in list  
  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/seqalign/alignment.py", line 379, in detach_viewer  
self.viewers.remove(viewer)  
  
See log for complete Python traceback.  
  

> open "/Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs" format
> session

No such file/path: /Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs  

> open "/Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs" format
> session

No such file/path: /Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs  

> open "/Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs" format
> session

No such file/path: /Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs  

> open "/Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs" format
> session

No such file/path: /Users/zck761/Google Drive/My Drive/SNF/overlayASIC_PAC.cxs  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/gui.py", line 609, in closeEvent  
sbar.destroy()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/ui/statusbar.py", line 51, in destroy  
v.delete()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 438, in delete  
self.make_current()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 478, in make_current  
return self._opengl_context.make_current()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 99, in make_current  
qc = self._initialize_context()  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context  
qc.setScreen(self._screen)  
RuntimeError: wrapped C/C++ object of type QScreen has been deleted  
  
RuntimeError: wrapped C/C++ object of type QScreen has been deleted  
  
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/graphics/opengl.py", line 125, in _initialize_context  
qc.setScreen(self._screen)  
  
See log for complete Python traceback.  
  




OpenGL version: unknown
Could not make opengl context currentHardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro17,1
      Processor Name: Unknown
      Processor Speed: 2,4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache: 8 MB
      Memory: 16 GB

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 1 day 4:29

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        S24E650:
          Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
          UI Looks like: 1920 x 1200 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Graphics
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Deleting status bar: wrapped C/C++ object of type QScreen has been deleted

comment:2 by Eric Pettersen, 3 years ago

Resolution: → duplicate
Status: assigned → closed
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