Opened 3 years ago

Closed 3 years ago

#6915 closed defect (fixed)

Tried to get the position of deleted drawing "Room camera"

Reported by: rkrishnan@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: VR Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
vr on
vr roomcamera
wanted to select the vrcamera frame and moveit.

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "L:\Graphics\GRPHX01\Chimera 1.15rc\bcx4161\bcx4161-7n7x.cxs" format
> session

No such file/path: L:\Graphics\GRPHX01\Chimera 1.15rc\bcx4161\bcx4161-7n7x.cxs  

> open 7n7x format mmcif fromDatabase pdb

7n7x title:  
Crystal structure of BCX7353(ORLADEYO) in complex with human plasma kallikrein
serine protease domain at 2.1 angstrom resolution [more info...]  
  
Chain information for 7n7x #1  
---  
Chain | Description | UniProt  
AAA | Plasma kallikrein light chain | KLKB1_HUMAN  
  
Non-standard residues in 7n7x #1  
---  
0RI — Orladeyo
(1-[3-(aminomethyl)phenyl]-N-(5-{(R)-[3-(aminomethyl)phenyl][(cyclopropylmethyl)amino]methyl}-2-fluorophenyl)-3-(trifluoromethyl)-1H-pyrazole-5-carboxamide)  
PO4 — phosphate ion  
  

> realsense on

realsense is provided by the uninstalled bundle RealSense versions 1.2 – 1.8  

> realsense on

realsense is provided by the uninstalled bundle RealSense versions 1.2 – 1.8  

> vr true

started SteamVR rendering  

> sequence chain #1/AAA

Alignment identifier is 1/AAA  

> view

> ui mousemode right select

> ui mousemode right zoom

> ui mousemode right translate

> ui mousemode right rotate

> ui mousemode right zoom

> ui mousemode right "rotate selected models"

> preset cartoons/nucleotides ribbons/slabs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> preset cartoons/nucleotides cylinders/stubs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides stubs

  

> preset "initial styles" cartoon

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "initial styles" "space-filling (chain colors)"

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> preset "molecular surfaces" "ghostly white"

Changed 3629 atom styles  
Preset expands to these ChimeraX commands:

    
    
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    surface
    color white targ s trans 80

  

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> preset cartoons/nucleotides ribbons/slabs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> preset "initial styles" "original look"

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> show surfaces

> transparency 0

> style ball

Changed 3788 atom styles  

> style sphere

Changed 3788 atom styles  

> style ball

Changed 3788 atom styles  

> color byhetero

> color bychain

> color bypolymer

> coulombic

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 7n7x_AAA SES surface #1.2: minimum, -16.87, mean 2.07,
maximum 17.98  
To also show corresponding color key, enter the above coulombic command and
add key true  

> mlp

Map values for surface "7n7x_AAA SES surface": minimum -26.98, mean -4.04,
maximum 27.25  
To also show corresponding color key, enter the above mlp command and add key
true  

> style ball

Changed 3788 atom styles  

> select protein

3629 atoms, 3679 bonds, 1 pseudobond, 229 residues, 2 models selected  

> graphics silhouettes false

> lighting shadows true

> graphics silhouettes true

> lighting full

> lighting simple

> lighting soft

> lighting full

> lighting simple

> select protein

3629 atoms, 3679 bonds, 1 pseudobond, 229 residues, 2 models selected  

> select ::name="0RI"

67 atoms, 71 bonds, 1 residue, 1 model selected  

> ui tool show "Color Actions"

> color sel byhetero

> color sel forest green target a

> color sel byhetero

> color sel gold target a

> color sel byhetero

> set bgColor blue

> set bgColor black

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Assigning partial charges to residue 0RI (net charge -2) with am1-bcc method  
Running ANTECHAMBER command: C:/ChimeraX 1.3/bin/amber20/bin/antechamber -ek
qm_theory='AM1', -i
C:\Users\RKRISH~1\AppData\Local\Temp\tmpt6916ml8\ante.in.mol2 -fi mol2 -o
C:\Users\RKRISH~1\AppData\Local\Temp\tmpt6916ml8\ante.out.mol2 -fo mol2 -c bcc
-nc -2 -j 5 -s 2 -dr n  
(0RI) ``  
(0RI) `Welcome to antechamber 20.0: molecular input file processor.`  
(0RI) ``  
(0RI) `Info: Finished reading file
(C:\Users\RKRISH~1\AppData\Local\Temp\tmpt6916ml8\ante.in.mol2); atoms read
(67), bonds read (71).`  
(0RI) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`  
(0RI) `Running: "C:/ChimeraX 1.3/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`  
(0RI) `bash.exe: warning: could not find /tmp, please create!`  
(0RI) ``  
(0RI) ``  
(0RI) `Running: "C:/ChimeraX 1.3/bin/amber20/bin/atomtype" -i
ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff`  
(0RI) `bash.exe: warning: could not find /tmp, please create!`  
(0RI) `Info: Total number of electrons: 294; net charge: -2`  
(0RI) ``  
(0RI) `Running: "C:/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out`  
(0RI) `bash.exe: warning: could not find /tmp, please create!`  
(0RI) `/usr/bin/antechamber: Fatal Error!`  
(0RI) `Cannot properly run ""C:/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i sqm.in
-o sqm.out".`  
Failure running ANTECHAMBER for residue 0RI Check reply log for details  

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Assigning partial charges to residue 0RI (net charge -2) with am1-bcc method  
Running ANTECHAMBER command: C:/ChimeraX 1.3/bin/amber20/bin/antechamber -ek
qm_theory='AM1', -i
C:\Users\RKRISH~1\AppData\Local\Temp\tmpst39jaid\ante.in.mol2 -fi mol2 -o
C:\Users\RKRISH~1\AppData\Local\Temp\tmpst39jaid\ante.out.mol2 -fo mol2 -c bcc
-nc -2 -j 5 -s 2 -dr n  
(0RI) ``  
(0RI) `Welcome to antechamber 20.0: molecular input file processor.`  
(0RI) ``  
(0RI) `Info: Finished reading file
(C:\Users\RKRISH~1\AppData\Local\Temp\tmpst39jaid\ante.in.mol2); atoms read
(67), bonds read (71).`  
(0RI) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`  
(0RI) `Running: "C:/ChimeraX 1.3/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`  
(0RI) `bash.exe: warning: could not find /tmp, please create!`  
(0RI) ``  
(0RI) ``  
(0RI) `Running: "C:/ChimeraX 1.3/bin/amber20/bin/atomtype" -i
ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff`  
(0RI) `bash.exe: warning: could not find /tmp, please create!`  
(0RI) `Info: Total number of electrons: 294; net charge: -2`  
(0RI) ``  
(0RI) `Running: "C:/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out`  
(0RI) `bash.exe: warning: could not find /tmp, please create!`  
(0RI) `/usr/bin/antechamber: Fatal Error!`  
(0RI) `Cannot properly run ""C:/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i sqm.in
-o sqm.out".`  
Failure running ANTECHAMBER for residue 0RI Check reply log for details  

> select /AAA

3788 atoms, 3754 bonds, 1 pseudobond, 318 residues, 2 models selected  

> coulombic sel

Coulombic values for 7n7x_AAA SES surface #1.2: minimum, -16.87, mean 2.07,
maximum 17.98  
To also show corresponding color key, enter the above coulombic command and
add key true  

> hide sel surfaces

> show sel surfaces

> style sel sphere

Changed 3788 atom styles  

> style sel stick

Changed 3788 atom styles  

> select ::name="0RI"

67 atoms, 71 bonds, 1 residue, 1 model selected  

> style sel ball

Changed 67 atom styles  

> movie record

> turn y 2 180

> wait 180

> movie encode C:\Users\rkrishnan\Desktop\movie7.mp4

Movie saved to \C:Users\\...\Desktop\movie7.mp4  
  

> save C:\Users\rkrishnan\Desktop\image3.png supersample 3

> show sel cartoons

Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.  

> ui tool show H-Bonds

> hbonds sel color #ffffff distSlop 0.8 angleSlop 25.0 reveal true

9 hydrogen bonds found  

> select H

1827 atoms, 230 residues, 1 model selected  

> label (#!1 & sel) attribute label_specifier

> ~label (#!1 & sel) residues

> select clear

> realsense on

realsense is provided by the uninstalled bundle RealSense versions 1.2 – 1.8  

> ui tool show "Model Panel"

> realsense on

realsense is provided by the uninstalled bundle RealSense versions 1.2 – 1.8  

> Realsesnse

Unknown command: Realsesnse  

> toolshed show

Downloading bundle ChimeraX_RealSense-1.8-cp39-cp39-win_amd64.whl  

Errors may have occurred when running pip:  

pip standard error:  
\---  
WARNING: Value for scheme.platlib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\rkrishnan\AppData\Local\UCSF\ChimeraX\1.3\site-packages  
sysconfig: C:\Users\rkrishnan\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.purelib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\rkrishnan\AppData\Local\UCSF\ChimeraX\1.3\site-packages  
sysconfig: C:\Users\rkrishnan\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils:
C:\Users\rkrishnan\AppData\Local\UCSF\ChimeraX\Python39\Include\pyrealsense2  
sysconfig:
C:\Users\rkrishnan\AppData\Roaming\Python\Python39\Include\pyrealsense2  
WARNING: Value for scheme.scripts does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\rkrishnan\AppData\Local\UCSF\ChimeraX\Python39\Scripts  
sysconfig: C:\Users\rkrishnan\AppData\Roaming\Python\Python39\Scripts  
WARNING: Value for scheme.data does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\rkrishnan\AppData\Local\UCSF\ChimeraX  
sysconfig: C:\Users\rkrishnan\AppData\Roaming\Python  
WARNING: Additional context:  
user = True  
home = None  
root = None  
prefix = None  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils:
C:\Users\rkrishnan\AppData\Local\UCSF\ChimeraX\Python39\Include\ChimeraX-
RealSense  
sysconfig:
C:\Users\rkrishnan\AppData\Roaming\Python\Python39\Include\ChimeraX-RealSense  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils:
C:\Users\rkrishnan\AppData\Local\UCSF\ChimeraX\Python39\Include\UNKNOWN  
sysconfig: C:\Users\rkrishnan\AppData\Roaming\Python\Python39\Include\UNKNOWN  
WARNING: You are using pip version 21.2.4; however, version 22.1 is available.  
You should consider upgrading via the 'C:\ChimeraX 1.3\bin\ChimeraX-
console.exe -m pip install --upgrade pip' command.  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing
c:\users\rkrishnan\downloads\chimerax_realsense-1.8-cp39-cp39-win_amd64.whl  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in c:\chimerax
1.3\bin\lib\site-packages (from ChimeraX-RealSense==1.8) (1.1)  
Requirement already satisfied: ChimeraX-Vive~=1.1 in c:\chimerax
1.3\bin\lib\site-packages (from ChimeraX-RealSense==1.8) (1.1)  
Requirement already satisfied: ChimeraX-Graphics~=1.0 in c:\chimerax
1.3\bin\lib\site-packages (from ChimeraX-RealSense==1.8) (1.1)  
Collecting pyrealsense2>=2  
Using cached pyrealsense2-2.50.0.3812-cp39-cp39-win_amd64.whl (24.2 MB)  
Requirement already satisfied: ChimeraX-Arrays~=1.0 in c:\chimerax
1.3\bin\lib\site-packages (from ChimeraX-RealSense==1.8) (1.0)  
Requirement already satisfied: ChimeraX-Core~=1.0 in c:\chimerax
1.3\bin\lib\site-packages (from ChimeraX-RealSense==1.8) (1.3)  
Installing collected packages: pyrealsense2, ChimeraX-RealSense  
Successfully installed ChimeraX-RealSense-1.8 pyrealsense2-2.50.0.3812  
\---  

Successfully installed ChimeraX-RealSense-1.8 pyrealsense2-2.50.0.3812  
Installed ChimeraX-RealSense (1.8)  

> realsesnse on

Unknown command: realsesnse on  

> realsense true

RealSense camera model #2  

> windowsize 960 540

> vr roomCamera true fieldOfView 69.4

VR mode select  

> select #100

5 models selected  
VR mode translate selected models  
[Repeated 1 time(s)]VR mode select  
VR mode move scene  

> select #100

5 models selected  

> select #100

5 models selected  

> select #2

1 model selected  
VR mode select  
[Repeated 2 time(s)]VR mode move scene  
[Repeated 2 time(s)]

> select #1

3788 atoms, 3754 bonds, 10 pseudobonds, 318 residues, 3 models selected  
VR mode select  

> select #2

1 model selected  
VR mode select  
VR mode move scene  
[Repeated 1 time(s)]

> select /AAA:305@HG3

1 atom, 1 residue, 1 model selected  

> select /AAA:115@C

1 atom, 1 residue, 1 model selected  
VR mode rotate selected models  

> select /AAA:272@HE2

1 atom, 1 residue, 1 model selected  

> select down

1 atom, 1 residue, 2 models selected  

> view matrix models
> #1,0.88192,0.15472,0.44529,6.9596,-0.21366,0.9732,0.085023,0.95548,-0.4202,-0.17012,0.89134,-10.085

> select /AAA:13@HG3

1 atom, 1 residue, 1 model selected  

> select down

1 atom, 1 residue, 2 models selected  

> view matrix models
> #1,0.55188,0.030507,0.83336,8.0091,-0.49502,0.8162,0.29794,0.97885,-0.6711,-0.57696,0.46555,-25.984

> select /AAA:21@CG

1 atom, 1 residue, 1 model selected  

> select down

1 atom, 1 residue, 2 models selected  

> view matrix models
> #1,-0.080177,-0.010062,0.99673,0.93679,-0.81556,0.57558,-0.059794,-10.804,-0.57309,-0.81769,-0.054354,-37.173

> select /AAA:51@CB

1 atom, 1 residue, 1 model selected  

> select down

1 atom, 1 residue, 2 models selected  

> view matrix models
> #1,-0.38398,-0.19436,0.90265,-7.6921,-0.86519,0.41719,-0.27821,-16.165,-0.32251,-0.88779,-0.32835,-40.041

VR mode select  

> select #2

1 model selected  
VR mode move scene  
VR mode select  

> select #2

1 model selected  
VR mode select  
VR mode zoom  

> select clear

VR mode move picked models  

> view matrix models
> #100.4,0.85257,-0.50865,-0.11996,-0.0392,0.34977,0.72594,-0.59218,7.1432,0.3883,0.46292,0.79683,4.8476

> view matrix models
> #100.4,0.81617,-0.57729,-0.024334,4.7781,0.47441,0.69357,-0.54212,9.5747,0.32984,0.43092,0.83995,10.448

> view matrix models
> #100.4,0.78449,-0.61759,-0.05618,3.9045,0.52947,0.7142,-0.45779,11.118,0.32285,0.32939,0.88728,10.311

> view matrix models
> #100.4,0.83586,-0.53622,-0.11747,1.4432,0.43332,0.7759,-0.45849,6.7827,0.337,0.33233,0.8809,8.8784

VR mode rotate selected models  
VR mode select  

> select down

1 model selected  
VR mode translate selected models  

> view matrix models
> #100.4,0.89572,-0.43916,-0.069437,-1.4373,0.40521,0.8706,-0.27904,6.3808,0.18299,0.22181,0.95777,6.3103

> view matrix models
> #100.4,0.8662,-0.37118,0.33454,-0.73792,0.42272,0.90132,-0.094464,6.1529,-0.26647,0.22324,0.93764,4.1026

> view matrix models
> #100.4,0.87089,-0.47194,0.13718,-5.8776,0.48523,0.78127,-0.39265,0.62457,0.07813,0.40852,0.9094,5.9769

> view matrix models
> #100.4,0.9242,-0.36931,-0.097324,-10.417,0.26279,0.79983,-0.53964,-3.4853,0.27714,0.47315,0.83626,5.8555

> view matrix models
> #100.4,0.87195,-0.40727,0.27174,-3.3826,0.47308,0.8438,-0.25338,1.7256,-0.1261,0.34949,0.92842,4.1622

> view matrix models
> #100.4,0.87743,-0.41949,0.2327,-3.207,0.4795,0.7811,-0.39994,-0.14603,-0.013988,0.4625,0.88651,4.6703

> view matrix models
> #100.4,0.84183,-0.43669,0.31721,-0.079866,0.52026,0.813,-0.26147,1.1026,-0.1437,0.38514,0.9116,4.359

> view matrix models
> #100.4,0.7665,-0.46672,0.44119,1.1508,0.55762,0.82446,-0.0966,2.715,-0.31866,0.32006,0.8922,4.2032

> view matrix models
> #100.4,0.8651,-0.48197,-0.13894,-9.3404,0.49905,0.85493,0.14161,1.3338,0.050529,-0.19184,0.98013,-1.9594

> view matrix models
> #100.4,0.83052,-0.55462,-0.0514,-4.2679,0.55115,0.80496,0.21972,4.8102,-0.080485,-0.21081,0.97421,5.346

> view matrix models
> #100.4,0.81792,-0.57408,0.038026,-2.7449,0.57188,0.81846,0.055382,5.4729,-0.062917,-0.023552,0.99774,6.5971

> view matrix models
> #100.4,0.84884,-0.52681,0.044096,-0.2656,0.52837,0.84815,-0.038176,5.3111,-0.017288,0.055704,0.9983,8.2917

> view matrix models
> #100.4,0.90144,-0.43288,0.0039884,-0.35749,0.42889,0.89179,-0.14409,3.1873,0.058818,0.1316,0.98956,10.013

> view matrix models
> #100.4,0.87422,-0.44069,0.20377,2.2039,0.46967,0.87397,-0.12486,3.8705,-0.12307,0.20486,0.97102,7.7281

> view matrix models
> #100.4,0.86638,-0.44645,0.22377,2.1797,0.48987,0.84685,-0.20705,2.9225,-0.097062,0.28901,0.95239,7.1105

> view matrix models
> #100.4,0.7075,-0.49217,0.50717,4.4674,0.5213,0.84799,0.095705,6.208,-0.47718,0.19667,0.85652,3.3914

> view matrix models
> #100.4,0.63707,-0.50797,0.57975,4.6824,0.5904,0.80512,0.05666,5.0579,-0.49555,0.30619,0.81282,4.0488

> view matrix models
> #100.4,0.61402,-0.54669,0.56931,4.1821,0.58372,0.80003,0.13868,5.6057,-0.53128,0.24716,0.81034,3.4075

> view matrix models
> #100.4,0.63613,-0.36084,0.682,4.6718,0.60085,0.78619,-0.14448,2.8663,-0.48405,0.50169,0.71694,1.7806

> view matrix models
> #100.4,0.71514,-0.51405,0.47363,4.3149,0.53414,0.83897,0.10406,3.9385,-0.45085,0.17856,0.87456,4.9316

> view matrix models
> #100.4,0.71705,-0.45355,0.52927,6.9961,0.52329,0.85189,0.02108,3.6017,-0.46044,0.26185,0.84819,5.8955

> select clear

> vr roomCamera saveTrackerMount true

VR mode translate selected models  

> select #2

1 model selected  
VR mode select  
VR mode translate selected models  

> view matrix models
> #100.4,0.36134,-0.42139,0.83179,5.1899,0.75758,0.65273,0.0015729,5.1238,-0.5436,0.62958,0.55509,1.8957

> view matrix models
> #100.4,0.43094,-0.8539,0.29179,-8.5732,0.8637,0.48397,0.14071,7.5647,-0.26137,0.19138,0.94608,14.423

> view matrix models
> #100.4,0.4745,-0.79113,0.38595,-7.5539,0.70259,0.60453,0.37539,7.5392,-0.5303,0.093038,0.84269,10.631

> view matrix models
> #100.4,0.39401,-0.85024,0.34906,-9.6839,0.79292,0.5065,0.33873,8.7227,-0.4648,0.14331,0.87374,10.696

> view matrix models
> #100.4,0.36124,-0.74748,0.55748,-6.2218,0.77005,0.57629,0.2737,7.3332,-0.52586,0.33042,0.78377,8.034

> view matrix models
> #100.4,0.40356,-0.59307,0.69671,-4.1999,0.76451,0.63691,0.099321,3.156,-0.50265,0.49256,0.71044,5.2277

> view matrix models
> #100.4,0.40487,-0.32368,0.85517,-2.763,0.7426,0.66208,-0.10098,0.35967,-0.5335,0.67593,0.50842,1.9933

> view matrix models
> #100.4,0.32376,-0.65037,0.68716,-4.3539,0.82504,0.54958,0.13143,3.509,-0.46313,0.52439,0.71452,4.3421

> view matrix models
> #100.4,0.41033,-0.58788,0.69715,-3.9731,0.82716,0.56182,-0.013094,1.5727,-0.38397,0.58203,0.71681,3.6964

> view matrix models
> #100.4,0.33928,-0.83143,0.44002,-8.1489,0.84744,0.4732,0.24069,5.8353,-0.40833,0.29123,0.86513,6.444

> view matrix models
> #100.4,0.38656,-0.662,0.64212,-2.4049,0.80245,0.58461,0.11963,4.4011,-0.45459,0.46902,0.75721,6.3012

> view matrix models
> #100.4,0.4129,-0.61425,0.67247,-0.57402,0.79978,0.59777,0.054953,3.9446,-0.43574,0.51514,0.73808,6.8318

> view matrix models
> #100.4,0.46118,-0.59341,0.65969,0.43768,0.7658,0.64172,0.041882,3.8506,-0.44818,0.48587,0.75037,7.4133

> view matrix models
> #100.4,0.47823,-0.5881,0.65226,1.4521,0.7844,0.62005,-0.016062,3.5422,-0.39498,0.51931,0.75783,8.2221

> view matrix models
> #100.4,0.44416,-0.57163,0.6899,2.8067,0.81216,0.58202,-0.040631,3.9683,-0.37831,0.57836,0.72276,7.4739

> view matrix models
> #100.4,0.45444,-0.56163,0.69142,3.0077,0.81525,0.57501,-0.068758,3.575,-0.35896,0.59493,0.71918,7.5428

> view matrix models
> #100.4,0.46184,-0.62761,0.62675,2.1662,0.81658,0.57672,-0.02422,4.4194,-0.34626,0.52298,0.77885,8.7117

> view matrix models
> #100.4,0.43745,-0.58772,0.6806,3.7284,0.8111,0.58468,-0.016439,4.5032,-0.38827,0.55922,0.73247,8.4547

> view matrix models
> #100.4,0.46484,-0.57556,0.6728,5.0848,0.80164,0.5962,-0.043836,4.5637,-0.37589,0.55972,0.73853,9.3437

> view matrix models
> #100.4,0.49312,-0.41698,0.76352,6.036,0.76746,0.62181,-0.15607,3.4321,-0.40969,0.66293,0.62664,7.5824

> vr roomCamera saveTrackerMount true

[Repeated 1 time(s)]

> cofr sel

> select ::name="0RI"

67 atoms, 71 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> select up

Nothing selected  

> select up

Nothing selected  

> select down

Nothing selected  
Traceback (most recent call last):  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line
134, in invoke  
return self._func(self._name, data)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 802, in
_next_frame  
self.process_controller_events()  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 830, in
process_controller_events  
self.process_controller_buttons()  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 857, in
process_controller_buttons  
hc.process_event(e)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 2681,
in process_event  
self._dispatch_event(m, event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 2689,
in _dispatch_event  
mode.released(hand_event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 3526,
in released  
self._click(hand_button_event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 3536,
in _click  
m.vr_release(e)  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 522, in vr_release  
self._undo_save()  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 469, in _undo_save  
new_model_positions = [m.position for m in models]  
TypeError: 'NoneType' object is not iterable  
  
Error processing trigger "new frame":  
TypeError: 'NoneType' object is not iterable  
  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 469, in _undo_save  
new_model_positions = [m.position for m in models]  
  
See log for complete Python traceback.  
  

> ui mousemode right select

> ui mousemode right zoom

> realsesnse off

Unknown command: realsesnse off  

> realsense false

> view

> vr false

> vr true

started SteamVR rendering  

> select /AAA:109@NE2

1 atom, 1 residue, 1 model selected  

> select down

1 atom, 1 residue, 2 models selected  

> select down

1 atom, 1 residue, 2 models selected  

> view matrix models
> #1,0.013609,0.59248,0.80547,-2.095,-0.9979,-0.042936,0.048442,-24.463,0.063284,-0.80444,0.59065,-54.367

> view matrix models
> #1,0.92654,0.32188,0.19472,18.937,-0.21527,0.87812,-0.42727,-20.334,-0.30852,0.35397,0.8829,-71.883

> view matrix models
> #1,-0.19939,0.78723,0.58354,-9.8763,-0.97418,-0.094876,-0.20488,-32.279,-0.10592,-0.60932,0.78582,-60.073

> view matrix models
> #1,-0.89914,0.38672,0.20491,-20.767,-0.33567,-0.30893,-0.88988,-17.023,-0.28083,-0.86892,0.40758,-62.783

> view matrix models
> #1,-0.84021,0.45784,0.29057,-9.7303,-0.39588,-0.1517,-0.90568,-23.385,-0.37058,-0.87599,0.30871,-70.262

> view matrix models
> #1,-0.42414,0.31441,0.84927,8.476,-0.71312,0.46207,-0.52721,-20.509,-0.55818,-0.82924,0.028226,-74.808

> view matrix models
> #1,-0.32115,-0.085745,0.94314,10.427,-0.91495,0.2851,-0.28563,-21.447,-0.2444,-0.95466,-0.17001,-71.531

> view matrix models
> #1,-0.49791,-0.21969,0.83894,8.4478,-0.81056,0.46185,-0.36012,-20.611,-0.30835,-0.85932,-0.40803,-72.876

> view matrix models
> #1,-0.38931,0.024791,0.92077,11.574,-0.72652,0.60624,-0.3235,-20.759,-0.56623,-0.7949,-0.218,-75.564

> view matrix models
> #1,-0.33561,-0.13226,0.93267,6.9752,-0.9027,0.32816,-0.27829,-23.559,-0.26926,-0.93532,-0.22952,-72.045

> view matrix models
> #1,-0.10418,-0.13963,0.98471,13.333,-0.97802,0.19417,-0.075934,-18.958,-0.1806,-0.97098,-0.15679,-71.723

> view matrix models
> #1,-0.20573,-0.28807,0.93525,15.718,-0.97641,0.12447,-0.17645,-22.12,-0.065576,-0.94949,-0.30688,-72.566

> select /AAA:401@C37

1 atom, 1 residue, 1 model selected  

> view matrix models
> #1,0.065571,-0.98993,0.12542,-16.879,-0.9868,-0.045675,0.15539,-19.367,-0.1481,-0.13396,-0.97986,-65.912

> tracker true

Unknown command: tracker true  

> vr roomCamera

> select #100

5 models selected  
VR mode select  
VR mode move picked models  
Traceback (most recent call last):  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line
134, in invoke  
return self._func(self._name, data)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 802, in
_next_frame  
self.process_controller_events()  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 830, in
process_controller_events  
self.process_controller_buttons()  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 857, in
process_controller_buttons  
hc.process_event(e)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 2681,
in process_event  
self._dispatch_event(m, event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 2689,
in _dispatch_event  
mode.released(hand_event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 3526,
in released  
self._click(hand_button_event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 3536,
in _click  
m.vr_release(e)  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 523, in vr_release  
self._log_command()  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 480, in _log_command  
cmd = self._move_command()  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 490, in _move_command  
cmd = 'view matrix models %s' % model_positions_string(models)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\std_commands\view.py",
line 488, in model_positions_string  
mpos = ','.join('#%s,%s' % (m.id_string, _position_string(m.position)) for m
in models)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\std_commands\view.py",
line 488, in <genexpr>  
mpos = ','.join('#%s,%s' % (m.id_string, _position_string(m.position)) for m
in models)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\drawing.py",
line 479, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
RuntimeError: Tried to get the position of deleted drawing "Room camera"  
  
Error processing trigger "new frame":  
RuntimeError: Tried to get the position of deleted drawing "Room camera"  
  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\drawing.py",
line 479, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
  
See log for complete Python traceback.  
  

> vr roomCamera

> vr false

> vr true

started SteamVR rendering  

> vr roomCamera

> select #100

5 models selected  
VR mode move picked models  
Traceback (most recent call last):  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line
134, in invoke  
return self._func(self._name, data)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 802, in
_next_frame  
self.process_controller_events()  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 830, in
process_controller_events  
self.process_controller_buttons()  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 857, in
process_controller_buttons  
hc.process_event(e)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 2681,
in process_event  
self._dispatch_event(m, event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 2689,
in _dispatch_event  
mode.released(hand_event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 3526,
in released  
self._click(hand_button_event)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\vive\vr.py", line 3536,
in _click  
m.vr_release(e)  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 523, in vr_release  
self._log_command()  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 480, in _log_command  
cmd = self._move_command()  
File "C:\ChimeraX 1.3\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 490, in _move_command  
cmd = 'view matrix models %s' % model_positions_string(models)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\std_commands\view.py",
line 488, in model_positions_string  
mpos = ','.join('#%s,%s' % (m.id_string, _position_string(m.position)) for m
in models)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\std_commands\view.py",
line 488, in <genexpr>  
mpos = ','.join('#%s,%s' % (m.id_string, _position_string(m.position)) for m
in models)  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\drawing.py",
line 479, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
RuntimeError: Tried to get the position of deleted drawing "Room camera"  
  
Error processing trigger "new frame":  
RuntimeError: Tried to get the position of deleted drawing "Room camera"  
  
File "C:\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\drawing.py",
line 479, in _drawing_get_position  
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 462.31
OpenGL renderer: Quadro P5000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: Precision 5820 Tower
OS: Microsoft Windows 10 Pro for Workstations (Build 19044)
Memory: 34,020,671,488
MaxProcessMemory: 137,438,953,344
CPU: 16 Intel(R) Xeon(R) W-2145 CPU @ 3.70GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-RealSense: 1.8
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    pyrealsense2: 2.50.0.3812
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (4)

comment:1 by pett, 3 years ago

Component: UnassignedVR
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionTried to get the position of deleted drawing "Room camera"

Reported by "Krish"

comment:2 by Tom Goddard, 3 years ago

Glad to see you are trying to setup the mixed reality capture with the RealSense camera. I use this pretty often, but I have not set up the camera position for a long time since the ChimeraX uses the Vive tracker after the initial setup, which I see from the log you were trying to do.

I think what went wrong is that you turned the vr and room camera on and off and on again and some bug made it not clean up the room camera screen model giving rise to the error. I'll have to test on my VR rig to see what is causing that. But if you avoid turning the VR and room camera on and off, just turn them on once when you are doing this setup, then I suspect you won't encounter the problem.

comment:3 by Tom Goddard, 3 years ago

The first traceback in this bug report was from trying to move the selected models (room camera) with the VR controller, clicking the controller button, then deselecting the models with the keyboard, and then releasing the VR button. On the button release the code was confused because the originally selected models were no longer selected. I fixed this rare problem.

The second traceback is because the VR room camera did not get deleted. I have not been able to make that happen with current ChimeraX daily build. Still investigating. Selecting the room camera and moving it with the VR controller worked correctly in my tests. Turning off and back on the VR did correctly remove the original VR camera.

comment:4 by Tom Goddard, 3 years ago

Resolution: fixed
Status: assignedclosed

Fixed.

The second and third tracebacks are the same and were caused by a bug in the VR drag picked model mode. After dragging the VR room camera, then closing the VR room camera, a subsequent VR drag pick button release without a button press generates the reported error. The release without a press can be achieved by clicking on the toolbar and then releasing off the toolbar. This is a rare bug. Made the drag pick mode forget the model picked after it is released so it does not hold onto a closed model.

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