Context Navigation

← Previous Ticket
Next Ticket →

#6892 closed defect (fixed)

Tape measure: shapes not aligned

Reported by:	chimerax-bug-report@…	Owned by:	Tom Goddard
Priority:	normal	Milestone:
Component:	Structure Analysis	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-5.13.0-40-generic-x86_64-with-glibc2.34
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 6sct

Summary of feedback from opening 6sct fetched from pdb  
---  
note | Fetching compressed mmCIF 6sct from
http://files.rcsb.org/download/6sct.cif  
  
6sct title:  
Cryo-EM structure of the consensus triskelion hub of the clathrin coat complex
[more info...]  
  
Chain information for 6sct #1  
---  
Chain | Description | UniProt  
A B C F G H K L M | Clathrin heavy chain | C0MHR2_PIG  
D E I J N O | Clathrin light chain | F1S398_PIG  
  

> ui mousemode right zoom

> open 3iyv

Summary of feedback from opening 3iyv fetched from pdb  
---  
note | Fetching compressed mmCIF 3iyv from
http://files.rcsb.org/download/3iyv.cif  
  
3iyv title:  
Clathrin D6 coat as full-length Triskelions [more info...]  
  
Chain information for 3iyv #2  
---  
Chain | Description | UniProt  
A B C D E F G H I | Clathrin heavy chain | CLH1_BOVIN  
J K L M N O P Q R | Clathrin light chain A | CLCA_BOVIN  
  
3iyv mmCIF Assemblies  
---  
1| complete point assembly  
2| point asymmetric unit  
3| point asymmetric unit, std point frame  
  

> show cartoons

> hide atoms

> open em-0116

'em-0116' has no suffix  

> close session

> open /home/zistpooya_co/Downloads/emd_5119.map format ccp4

Opened emd_5119.map as #1, grid size 312,312,312, pixel 2.8, shown at level
0.343, step 2, values float32  

> volume #1 level 0.06682

> ui mousemode right clip

> ui mousemode right zoom

> ui mousemode right "link markers"

> ui mousemode right "tape measure"

> marker segment #2 position -232.3,93.73,-33.52 toPosition 229,79.67,95.25
> color yellow radius 0.7 label 479.2 labelHeight 47.92 labelColor yellow

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 637, in <lambda>  
gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e,
"mouse_down")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 33, in mouse_down  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 638, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/mouse_modes/mousemodes.py", line 537, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 43, in mouse_drag  
p, v = self._picked_point(event)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 159, in _picked_point  
pm, vm = method(xyz1, xyz2)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/tape_measure/tape.py", line 170, in _surface_or_atom_point  
p = view.picked_object_on_segment(xyz1, xyz2, exclude =
self._exclude_markers_from_pick)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 834, in picked_object_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1037, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in first_intercept_children  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1050, in <listcomp>  
pos = [p.inverse() * (mxyz1, mxyz2) for p in self.positions]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/place.py", line 119, in __mul__  
return m34.apply_matrix(self._matrix, p)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/geometry/matrix.py", line 22, in apply_matrix  
r = matrix_multiply(points, transpose(tf[:, :3]))  
File "<__array_function__ internals>", line 5, in dot  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)  
  
File "<__array_function__ internals>", line 5, in dot  
  
See log for complete Python traceback.  
  

> marker delete #2




OpenGL version: 3.3.0 NVIDIA 470.103.01
OpenGL renderer: NVIDIA GeForce GTX 1660/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Supermicro
Model: X10DAx
OS: Ubuntu 21.10 impish
Architecture: 64bit ELF
Virutal Machine: none
CPU: 40 Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz
Cache Size: 25600 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            31Gi        14Gi       2.1Gi       316Mi        14Gi        15Gi
	Swap:           29Gi       3.4Gi        26Gi

Graphics:
	81:00.0 VGA compatible controller [0300]: NVIDIA Corporation TU116 [GeForce GTX 1660] [10de:2184] (rev a1)	
	Subsystem: Gigabyte Technology Co., Ltd TU116 [GeForce GTX 1660] [1458:3fc7]	
	Kernel driver in use: nvidia
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBImages: 1.1
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.1
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    distro: 1.6.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    line-profiler: 3.3.0
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    Send2Trash: 1.8.0
    SEQCROW: 1.3.2
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0

Change History (2)

comment:1 by pett, 3 years ago

Component:	Unassigned → Structure Analysis
Owner:	set to Tom Goddard
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Tape measure: shapes not aligned

comment:2 by Tom Goddard, 3 years ago

Resolution:	→ fixed
Status:	assigned → closed

Fixed.

User used clip mouse mode and made clip planes then used tape measure mouse mode and clip planes clipped entire ray under mouse causing an error in the tape measure mode because it assumed that the ray between clip planes would always exist.

It would be helpful if there were an obvious way to turn off clip planes after using clip mouse mode.

Note: See TracTickets for help on using tickets.

Download in other formats: