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Opened 4 years ago
Last modified 3 years ago
#4842 accepted defect
Long atom spec crashes ChimeraX
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Command Line | Version: | |
| Keywords: | Cc: | chimera-programmers, Tristan Croll, wenxiang.cao@…, kavita.iyer@… | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.3.dev202106161734 (2021-06-16 17:34:19 UTC)
Description
Last time you used ChimeraX it crashed.
Open 5u1c and then in Python shell:
spec = " | ".join(["@@serial_number=%d" % a.serial_number for a in session.models[0].atoms])
from chimerax.core.commands import run
run(session, "sel " + spec)
Fatal Python error: Segmentation fault
Thread 0x00007000122ec000 (most recent call first):
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/selectors.py", line 558 in select
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/asyncio/base_events.py", line 1823 in _run_once
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/asyncio/base_events.py", line 570 in run_forever
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tornado/platform/asyncio.py", line 199 in start
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ipykernel/iostream.py", line 78 in _thread_main
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 870 in run
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 890 in _bootstrap
Thread 0x00007000112e9000 (most recent call first):
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/selectors.py", line 558 in select
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/asyncio/base_events.py", line 1823 in _run_once
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/asyncio/base_events.py", line 570 in run_forever
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tornado/platform/asyncio.py", line 199 in start
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ipykernel/iostream.py", line 78 in _thread_main
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 870 in run
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 890 in _bootstrap
Thread 0x00007000102e6000 (most recent call first):
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 302 in wait
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 558 in wait
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/IPython/core/history.py", line 829 in run
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/IPython/core/history.py", line 58 in needs_sqlite
File "", line 2 in run
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 890 in _bootstrap
Current thread 0x0000000109913dc0 (most recent call first):
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/ast.py", line 120 in __setattr__
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/ast.py", line 16 in __init__
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/ast.py", line 90 in copy
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 642 in _try
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/contextlib.py", line 113 in __enter__
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 679 in _choice
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/contextlib.py", line 113 in __enter__
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 523 in _attr_operator_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 499 in _attr_test_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 486 in _attribute_list_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 449 in _atom_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 396 in block7
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 787 in _positive_closure
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 398 in _residue_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 359 in block7
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 787 in _positive_closure
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 361 in _chain_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 323 in block0
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 787 in _positive_closure
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 325 in _model_parts_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 200 in _model_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 157 in block0
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 787 in _positive_closure
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 159 in _model_list_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 136 in _as_term_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 89 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 497 in _invoke_rule
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 458 in _call
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/grako/contexts.py", line 59 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/_atomspec.py", line 100 in _atom_specifier_
...
Process: ChimeraX [1879]
Path: /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: tcsh [568]
Responsible: Terminal [495]
User ID: 501
Date/Time: 2021-06-29 16:10:57.048 -0700
OS Version: Mac OS X 10.15.7 (19H1217)
Report Version: 12
Anonymous UUID: 1001EC17-01AB-23EF-FBAF-2E1668FB0851
Time Awake Since Boot: 30000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_PROTECTION_FAILURE at 0x00007ffeed6e4f38
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x7ffeed6e4f38:
MALLOC_SMALL 00007fe116800000-00007fe117000000 [ 8192K] rw-/rwx SM=PRV
--> Stack Guard 00007ffee9ee5000-00007ffeed6e5000 [ 56.0M] ---/rwx SM=NUL
Stack 00007ffeed6e5000-00007ffeedee5000 [ 8192K] rw-/rwx SM=SHM
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
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301 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
302 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
303 org.python.python 0x0000000101e1c57c call_function + 444
304 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
305 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
306 org.python.python 0x0000000101e1c57c call_function + 444
307 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
308 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
309 org.python.python 0x0000000101e1c57c call_function + 444
310 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
311 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
312 org.python.python 0x0000000101e1c57c call_function + 444
313 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
314 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
315 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
316 org.python.python 0x0000000101e1c57c call_function + 444
317 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
318 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
319 org.python.python 0x0000000101e1c57c call_function + 444
320 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
321 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
322 org.python.python 0x0000000101e1c57c call_function + 444
323 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
324 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
325 org.python.python 0x0000000101e1c57c call_function + 444
326 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
327 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
328 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
329 org.python.python 0x0000000101e1c57c call_function + 444
330 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
331 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
332 org.python.python 0x0000000101e1c57c call_function + 444
333 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
334 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
335 org.python.python 0x0000000101e1c57c call_function + 444
336 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
337 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
338 org.python.python 0x0000000101e1c57c call_function + 444
339 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
340 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
341 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
342 org.python.python 0x0000000101e1c57c call_function + 444
343 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
344 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
345 org.python.python 0x0000000101e1c57c call_function + 444
346 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
347 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
348 org.python.python 0x0000000101e1c57c call_function + 444
349 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
350 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
351 org.python.python 0x0000000101e1c57c call_function + 444
352 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
353 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
354 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
355 org.python.python 0x0000000101e1c57c call_function + 444
356 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
357 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
358 org.python.python 0x0000000101e1c57c call_function + 444
359 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
360 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
361 org.python.python 0x0000000101e1c57c call_function + 444
362 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
363 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
364 org.python.python 0x0000000101e1c57c call_function + 444
365 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
366 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
367 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
368 org.python.python 0x0000000101e1c57c call_function + 444
369 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
370 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
371 org.python.python 0x0000000101e1c57c call_function + 444
372 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
373 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
374 org.python.python 0x0000000101e1c57c call_function + 444
375 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
376 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
377 org.python.python 0x0000000101e1c57c call_function + 444
378 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
379 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
380 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
381 org.python.python 0x0000000101e1c57c call_function + 444
382 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
383 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
384 org.python.python 0x0000000101e1c57c call_function + 444
385 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
386 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
387 org.python.python 0x0000000101e1c57c call_function + 444
388 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
389 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
390 org.python.python 0x0000000101e1c57c call_function + 444
391 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
392 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
393 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
394 org.python.python 0x0000000101e1c57c call_function + 444
395 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
396 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
397 org.python.python 0x0000000101e1c57c call_function + 444
398 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
399 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
400 org.python.python 0x0000000101e1c57c call_function + 444
401 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
402 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
403 org.python.python 0x0000000101e1c57c call_function + 444
404 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
405 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
406 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
407 org.python.python 0x0000000101e1c57c call_function + 444
408 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
409 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
410 org.python.python 0x0000000101e1c57c call_function + 444
411 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
412 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
413 org.python.python 0x0000000101e1c57c call_function + 444
414 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
415 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
416 org.python.python 0x0000000101e1c57c call_function + 444
417 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
418 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
419 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
420 org.python.python 0x0000000101e1c57c call_function + 444
421 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
422 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
423 org.python.python 0x0000000101e1c57c call_function + 444
424 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
425 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
426 org.python.python 0x0000000101e1c57c call_function + 444
427 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
428 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
429 org.python.python 0x0000000101e1c57c call_function + 444
430 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
431 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
432 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
433 org.python.python 0x0000000101e1c57c call_function + 444
434 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
435 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
436 org.python.python 0x0000000101e1c57c call_function + 444
437 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
438 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
439 org.python.python 0x0000000101e1c57c call_function + 444
440 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
441 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
442 org.python.python 0x0000000101e1c57c call_function + 444
443 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
444 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
445 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
446 org.python.python 0x0000000101e1c57c call_function + 444
447 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
448 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
449 org.python.python 0x0000000101e1c57c call_function + 444
450 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
451 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
452 org.python.python 0x0000000101e1c57c call_function + 444
453 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
454 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
455 org.python.python 0x0000000101e1c57c call_function + 444
456 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
457 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
458 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
459 org.python.python 0x0000000101e1c57c call_function + 444
460 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
461 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
462 org.python.python 0x0000000101e1c57c call_function + 444
463 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
464 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
465 org.python.python 0x0000000101e1c57c call_function + 444
466 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
467 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
468 org.python.python 0x0000000101e1c57c call_function + 444
469 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
470 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
471 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
472 org.python.python 0x0000000101e1c57c call_function + 444
473 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
474 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
475 org.python.python 0x0000000101e1c57c call_function + 444
476 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
477 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
478 org.python.python 0x0000000101e1c57c call_function + 444
479 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
480 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
481 org.python.python 0x0000000101e1c57c call_function + 444
482 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
483 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
484 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
485 org.python.python 0x0000000101e1c57c call_function + 444
486 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
487 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
488 org.python.python 0x0000000101e1c57c call_function + 444
489 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
490 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
491 org.python.python 0x0000000101e1c57c call_function + 444
492 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
493 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
494 org.python.python 0x0000000101e1c57c call_function + 444
495 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
496 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
497 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
498 org.python.python 0x0000000101e1c57c call_function + 444
499 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
500 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
501 org.python.python 0x0000000101e1c57c call_function + 444
502 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
503 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
504 org.python.python 0x0000000101e1c57c call_function + 444
505 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
506 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
507 org.python.python 0x0000000101e1c57c call_function + 444
508 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
509 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
510 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
511 org.python.python 0x0000000101e1c57c call_function + 444
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff6b3a0b96 kevent64 + 10
1 QtWebEngineCore 0x0000000115db6e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000115db6cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000115d4aa94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115d54778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000115d55150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000115d54c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6b3a0b96 kevent64 + 10
1 QtWebEngineCore 0x0000000115db6e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000115db6cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000119c83f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115cd41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 5:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff6b39a882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6b45b425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000115da3e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000011705b5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 6:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115cd420f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 7:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6b3a0b96 kevent64 + 10
1 QtWebEngineCore 0x0000000115db6e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000115db6cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115cd41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 9:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115cd41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115cd41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115d5476a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000115d55150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x0000000115d54d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 12:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115cd41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115cd41db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000115d3f62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000115d037cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115d5ea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 14:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff31152985 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff31151452 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff311508ce CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2e564954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 15:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115dac2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000115d5476a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000115d54e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x0000000115d54c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 16:
0 libsystem_kernel.dylib 0x00007fff6b39a882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6b45b425 _pthread_cond_wait + 698
2 org.python.python 0x0000000101e6f9a6 PyThread_acquire_lock_timed + 454
3 org.python.python 0x0000000101ebcbbf acquire_timed + 111
4 org.python.python 0x0000000101ebccd0 lock_PyThread_acquire_lock + 48
5 org.python.python 0x0000000101d56f45 method_vectorcall_VARARGS_KEYWORDS + 373
6 org.python.python 0x0000000101e1c57c call_function + 444
7 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
8 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
9 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
10 org.python.python 0x0000000101e1c57c call_function + 444
11 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
12 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
13 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
14 org.python.python 0x0000000101e1c57c call_function + 444
15 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
16 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
17 org.python.python 0x0000000101d4ddfd PyVectorcall_Call + 109
18 org.python.python 0x0000000101e198e8 _PyEval_EvalFrameDefault + 26968
19 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
20 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
21 org.python.python 0x0000000101e1c57c call_function + 444
22 org.python.python 0x0000000101e19475 _PyEval_EvalFrameDefault + 25829
23 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
24 org.python.python 0x0000000101e1c57c call_function + 444
25 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
26 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
27 org.python.python 0x0000000101e1c57c call_function + 444
28 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
29 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
30 org.python.python 0x0000000101d50b2b method_vectorcall + 235
31 org.python.python 0x0000000101d4ddfd PyVectorcall_Call + 109
32 org.python.python 0x0000000101ebc5ba t_bootstrap + 74
33 org.python.python 0x0000000101e6f589 pythread_wrapper + 25
34 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
35 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 17:: ZMQbg/Reaper
0 libsystem_kernel.dylib 0x00007fff6b39c766 kevent + 10
1 libzmq.5.dylib 0x000000013f65db45 zmq::kqueue_t::loop() + 181
2 libzmq.5.dylib 0x000000013f68c13d thread_routine(void*) + 61
3 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 18:: ZMQbg/IO/0
0 libsystem_kernel.dylib 0x00007fff6b39c766 kevent + 10
1 libzmq.5.dylib 0x000000013f65db45 zmq::kqueue_t::loop() + 181
2 libzmq.5.dylib 0x000000013f68c13d thread_routine(void*) + 61
3 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 19:
0 libsystem_kernel.dylib 0x00007fff6b39c766 kevent + 10
1 select.cpython-38-darwin.so 0x00000001025261d1 select_kqueue_control + 1057
2 org.python.python 0x0000000101d570be method_vectorcall_FASTCALL + 254
3 org.python.python 0x0000000101e1c57c call_function + 444
4 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
5 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
6 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
7 org.python.python 0x0000000101e1c57c call_function + 444
8 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
9 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
10 org.python.python 0x0000000101e1c57c call_function + 444
11 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
12 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
13 org.python.python 0x0000000101e1c57c call_function + 444
14 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
15 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
16 org.python.python 0x0000000101e1c57c call_function + 444
17 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
18 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
19 org.python.python 0x0000000101d50b2b method_vectorcall + 235
20 org.python.python 0x0000000101d4ddfd PyVectorcall_Call + 109
21 org.python.python 0x0000000101e198e8 _PyEval_EvalFrameDefault + 26968
22 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
23 org.python.python 0x0000000101e1c57c call_function + 444
24 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
25 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
26 org.python.python 0x0000000101e1c57c call_function + 444
27 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
28 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
29 org.python.python 0x0000000101d50b2b method_vectorcall + 235
30 org.python.python 0x0000000101d4ddfd PyVectorcall_Call + 109
31 org.python.python 0x0000000101ebc5ba t_bootstrap + 74
32 org.python.python 0x0000000101e6f589 pythread_wrapper + 25
33 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
34 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 20:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115d54778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000115d55150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000115d54cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 21:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6b397dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6b398170 mach_msg + 60
2 QtWebEngineCore 0x0000000115dac492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000115d54778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000115d55150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000115d54cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000115da7e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 22:
0 libsystem_kernel.dylib 0x00007fff6b39a882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6b45b425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000102e6427b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 23:
0 libsystem_kernel.dylib 0x00007fff6b39a882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6b45b425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000102e6427b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 24:
0 libsystem_kernel.dylib 0x00007fff6b39a882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6b45b425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000102e6427b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 25:: ZMQbg/Reaper
0 libsystem_kernel.dylib 0x00007fff6b39c766 kevent + 10
1 libzmq.5.dylib 0x000000013f65db45 zmq::kqueue_t::loop() + 181
2 libzmq.5.dylib 0x000000013f68c13d thread_routine(void*) + 61
3 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 26:: ZMQbg/IO/0
0 libsystem_kernel.dylib 0x00007fff6b39c766 kevent + 10
1 libzmq.5.dylib 0x000000013f65db45 zmq::kqueue_t::loop() + 181
2 libzmq.5.dylib 0x000000013f68c13d thread_routine(void*) + 61
3 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 27:
0 libsystem_kernel.dylib 0x00007fff6b39c766 kevent + 10
1 select.cpython-38-darwin.so 0x00000001025261d1 select_kqueue_control + 1057
2 org.python.python 0x0000000101d570be method_vectorcall_FASTCALL + 254
3 org.python.python 0x0000000101e1c57c call_function + 444
4 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
5 org.python.python 0x0000000101e1d3c4 _PyEval_EvalCodeWithName + 2804
6 org.python.python 0x0000000101d4e5be _PyFunction_Vectorcall + 270
7 org.python.python 0x0000000101e1c57c call_function + 444
8 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
9 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
10 org.python.python 0x0000000101e1c57c call_function + 444
11 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
12 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
13 org.python.python 0x0000000101e1c57c call_function + 444
14 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
15 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
16 org.python.python 0x0000000101e1c57c call_function + 444
17 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
18 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
19 org.python.python 0x0000000101d50b2b method_vectorcall + 235
20 org.python.python 0x0000000101d4ddfd PyVectorcall_Call + 109
21 org.python.python 0x0000000101e198e8 _PyEval_EvalFrameDefault + 26968
22 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
23 org.python.python 0x0000000101e1c57c call_function + 444
24 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
25 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
26 org.python.python 0x0000000101e1c57c call_function + 444
27 org.python.python 0x0000000101e193ba _PyEval_EvalFrameDefault + 25642
28 org.python.python 0x0000000101d4e420 function_code_fastcall + 128
29 org.python.python 0x0000000101d50b2b method_vectorcall + 235
30 org.python.python 0x0000000101d4ddfd PyVectorcall_Call + 109
31 org.python.python 0x0000000101ebc5ba t_bootstrap + 74
32 org.python.python 0x0000000101e6f589 pythread_wrapper + 25
33 libsystem_pthread.dylib 0x00007fff6b45b109 _pthread_start + 148
34 libsystem_pthread.dylib 0x00007fff6b456b8b thread_start + 15
Thread 28:
0 libsystem_pthread.dylib 0x00007fff6b456b68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000109913dc0 rcx: 0x00007fe10914da58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fe10914da80 rsp: 0x00007fe10914da58
r8: 0x00007fe10914df48 r9: 0x7d81f80e931e37d1 r10: 0x0000000109913dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007ffeed6e51a0 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6b39e33a rfl: 0x0000000000000246 cr2: 0x00007fe10914df48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6b04a000 - 0x7fff6b051fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6b052000 - 0x7fff6b05bff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6b05c000 - 0x7fff6b0eefdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib
0x7fff6b1fb000 - 0x7fff6b23bff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6b23c000 - 0x7fff6b272fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff6b273000 - 0x7fff6b273ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6b274000 - 0x7fff6b280ff3 libkxld.dylib (6153.141.33) /usr/lib/system/libkxld.dylib
0x7fff6b281000 - 0x7fff6b281ff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib
0x7fff6b282000 - 0x7fff6b287ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6b288000 - 0x7fff6b28aff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6b28b000 - 0x7fff6b28cff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6b28d000 - 0x7fff6b2a4ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff6b2a5000 - 0x7fff6b2a5ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6b2a6000 - 0x7fff6b32dfff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff6b32e000 - 0x7fff6b331ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff6b332000 - 0x7fff6b335fff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6b336000 - 0x7fff6b33efff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff6b33f000 - 0x7fff6b346fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6b347000 - 0x7fff6b348ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6b349000 - 0x7fff6b396ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6b397000 - 0x7fff6b3c3ff7 libsystem_kernel.dylib (6153.141.33) /usr/lib/system/libsystem_kernel.dylib
0x7fff6b3c4000 - 0x7fff6b40bfff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6b40c000 - 0x7fff6b433fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6b434000 - 0x7fff6b441ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6b442000 - 0x7fff6b44bff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6b44c000 - 0x7fff6b454fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6b455000 - 0x7fff6b45ffff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6b460000 - 0x7fff6b464ff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6b465000 - 0x7fff6b467fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6b468000 - 0x7fff6b46fffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6b470000 - 0x7fff6b486ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff6b488000 - 0x7fff6b48dff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6b48e000 - 0x7fff6b4c3ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 17658
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 336K 2
CG image 92K 13
CoreAnimation 80K 16
CoreGraphics 8K 1
CoreImage 16K 4
CoreUI image data 1272K 21
Dispatch continuations 8192K 1
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 897.1M 1481
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)
Mach message 32K 4
OpenGL GLSL 384K 5
STACK GUARD 112K 28
Stack 188.7M 29
Stack Guard 56.0M 1
VM_ALLOCATE 135.4M 96
__DATA 52.2M 569
__DATA_CONST 408K 25
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 477.2M 185
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 526.1M 534
__UNICODE 564K 1
mapped file 400.6M 53
shared memory 2976K 28
=========== ======= =======
TOTAL 2.7G 3116
TOTAL, minus reserved VM space 2.7G 3116
Log:
UCSF ChimeraX version: 1.3.dev202106161734 (2021-06-16)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Unable to load numpy_formathandler accelerator from OpenGL_accelerate
> ui tool show Shell
OpenGL version: 4.1 INTEL-14.7.17
OpenGL renderer: Intel(R) Iris(TM) Pro Graphics 6200
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Memory: 16 GB
Boot ROM Version: 427.0.0.0.0
SMC Version (system): 2.32f21
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1217)
Kernel Version: Darwin 19.6.0
Time since boot: 8:31
Graphics/Displays:
Intel Iris Pro Graphics 6200:
Chipset Model: Intel Iris Pro Graphics 6200
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1622
Revision ID: 0x000a
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
iMac:
Display Type: LCD
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.4.1
chardet: 3.0.4
ChimeraX-AddCharge: 1.1.2
ChimeraX-AddH: 2.1.7
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AltlocExplorer: 1.0
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.25.1
ChimeraX-AtomicLibrary: 3.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.3
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3.dev202106161734
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-GaudiViewX: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.3
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.3
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.6
ChimeraX-PDB: 2.4.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.10
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 1.1.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
pandas: 1.2.4
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.16
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
PyYAML: 5.4.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
Send2Trash: 1.5.0
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Attachments (1)
Change History (9)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Command Line |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Reporter: | changed from to |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Long atom spec crashes ChimeraX |
comment:3 by , 3 years ago
| Cc: | added |
|---|
comment:4 by , 3 years ago
| Cc: | added |
|---|
comment:7 by , 3 years ago
Maybe it would be worth putting a little code in the atomspec parser to check if it is parsing a list long list that will crash and in that case raise a Python error saying "Unfortunately ChimeraX cannot handle an atom specifier with more than 1000 comma-separated itesms". That way the user at least does not lose all their work from the session in a crash. This could be a temporary fix until we find an actual solution.
comment:8 by , 3 years ago
cpp-peglib looks promising. It successfully parses the atom spec in the description (8956 attribute tests) in 1.8 seconds. It's not actually _performing_ any of the attribute tests, just parsing them, so executing the atom spec would probably take much longer. I'm attaching the test program.
Note:
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Three observations:
1) 'sel' with no arguments selects the whole molecule (this may solve the user's immediate problem)
2) 'sel' on 500 atoms takes a second or so to complete, but ChimeraX doesn't crash
3) 'sel' with 1000 arguments quits out with "RecursionError: maximum recursion depth exceeded", but ChimeraX doesn't crash here either
Traceback from the 1000-argument select:
~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/run.py in run(session, text, log, downgrade_errors, return_json, return_list) 34 command = Command(session) 35 try: ---> 36 results = command.run(text, log=log, return_json=return_json) 37 except UserError as err: 38 if downgrade_errors: ~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py in run(self, text, log, log_only, return_json, _used_aliases) 2810 continue 2811 return results -> 2812 prev_annos = self._process_positional_arguments() 2813 if self._error: 2814 if log: ~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py in _process_positional_arguments(self) 2586 return last_anno, None 2587 try: -> 2588 value, text = self._parse_arg(anno, text, session, False) 2589 kwn = '%s_' % kw_name if is_python_keyword(kw_name) else kw_name 2590 self._kw_args[kwn] = value ~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py in _parse_arg(self, annotation, text, session, final) 2445 self.amount_parsed += start 2446 self.current_text += leading -> 2447 value, replacement, rest = annotation.parse(text, session) 2448 if len(rest) > 0: 2449 text = text[:-len(rest)] ~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py in parse(cls, text, session) 1274 aspec, text, rest = super().parse(text, session) 1275 objects = aspec.evaluate(session) -> 1276 objects.spec = str(aspec) 1277 return objects, text, rest 1278 ~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/atomspec.py in __str__(self) 1037 else: 1038 return "%s %s %s" % (str(self._left_spec), self._operator, -> 1039 str(self._right_spec)) 1040 1041 def evaluate(self, session, models=None, *, order_implicit_atoms=False, add_implied=None, **kw): ~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/atomspec.py in __str__(self) 1037 else: 1038 return "%s %s %s" % (str(self._left_spec), self._operator, -> 1039 str(self._right_spec)) 1040 1041 def evaluate(self, session, models=None, *, order_implicit_atoms=False, add_implied=None, **kw): last 2 frames repeated, from the frame below ... ~/git/prof/rbvi/ChimeraX/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/atomspec.py in __str__(self) 1037 else: 1038 return "%s %s %s" % (str(self._left_spec), self._operator, -> 1039 str(self._right_spec)) 1040 1041 def evaluate(self, session, models=None, *, order_implicit_atoms=False, add_implied=None, **kw): RecursionError: maximum recursion depth exceededRaising the recursion limit from 3000 does let me do the 1000 atom select, but the whole 8500-or-so selection still does crash.