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Opened 4 years ago
Closed 3 years ago
#6844 closed defect (fixed)
Flip peptide bond: wrapped C/C++ object of type QTableWidget has been deleted
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-10.14.6-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)
Trying to flip a peptide bond with ISOLDE
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/henryshuman/Documents/NAMD/myo1c_into_P19_J544/actomyo_2_myos_5actins_end_of_step4.pdb
Chain information for actomyo_2_myos_5actins_end_of_step4.pdb #1
---
Chain | Description
A B C D E | No description available
F | No description available
L Q | No description available
M N O R S T | No description available
> ui tool show ISOLDE
> set selectionWidth 4
Chain information for actomyo_2_myos_5actins_end_of_step4.pdb
---
Chain | Description
1.2/A 1.2/B 1.2/C 1.2/D 1.2/E | No description available
1.2/F | No description available
1.2/L 1.2/Q | No description available
1.2/M 1.2/N 1.2/O 1.2/R 1.2/S 1.2/T | No description available
Done loading forcefield
> close #1.2
Deleting atomic symmetry model...
Deleting atomic symmetry model...
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/validation/ramaplot.py", line 112, in
_selection_changed_cb
residues = self.current_model.residues
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 83, in get_attr
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None
AttributeError: Execution of 'Structure' object's 'residues' property raised
AttributeError
Error processing trigger "selection changed":
AttributeError: Execution of 'Structure' object's 'residues' property raised
AttributeError
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/attributes.py", line 83, in get_attr
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
'NoneType' object has no attribute 'triggers'
> open
> /Users/henryshuman/Documents/NAMD/myo1c_into_P19_J544/actomyo_2_myos_5actins_step5.pdb
Summary of feedback from opening
/Users/henryshuman/Documents/NAMD/myo1c_into_P19_J544/actomyo_2_myos_5actins_step5.pdb
---
warnings | Ignored bad PDB record found on line 100001
ATOM 186a0 OH2 TIP3W1770 -23.145 25.107 -15.159 0.00 0.00 WT2
Ignored bad PDB record found on line 100002
ATOM 186a1 H1 TIP3W1770 -22.383 25.594 -14.845 0.00 0.00 WT2
Ignored bad PDB record found on line 100003
ATOM 186a2 H2 TIP3W1770 -22.784 24.288 -15.498 0.00 0.00 WT2
Ignored bad PDB record found on line 100004
ATOM 186a3 OH2 TIP3W1771 68.800 -65.078 -14.015 0.00 0.00 WT2
Ignored bad PDB record found on line 100005
ATOM 186a4 H1 TIP3W1771 69.487 -64.970 -14.673 0.00 0.00 WT2
91 messages similar to the above omitted
Duplicate atom serial number found: 18700
Duplicate atom serial number found: 18701
Duplicate atom serial number found: 18702
Duplicate atom serial number found: 18703
Duplicate atom serial number found: 18704
5 messages similar to the above omitted
Ignored bad PDB record found on line 100107
ATOM 1870a H1 TIP3W1805 162.407 -20.939 -19.510 0.00 0.00 WT2
Ignored bad PDB record found on line 100108
ATOM 1870b H2 TIP3W1805 161.694 -21.206 -20.819 0.00 0.00 WT2
Ignored bad PDB record found on line 100109
ATOM 1870c OH2 TIP3W1806 -37.816 -9.491 -15.960 0.00 0.00 WT2
Ignored bad PDB record found on line 100110
ATOM 1870d H1 TIP3W1806 -38.562 -8.967 -16.253 0.00 0.00 WT2
Ignored bad PDB record found on line 100111
ATOM 1870e H2 TIP3W1806 -38.178 -10.365 -15.816 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18710
Duplicate atom serial number found: 18711
Duplicate atom serial number found: 18712
Duplicate atom serial number found: 18713
Duplicate atom serial number found: 18714
5 messages similar to the above omitted
Ignored bad PDB record found on line 100123
ATOM 1871a H2 TIP3W1811 -2.527 194.040 21.296 0.00 0.00 WT2
Ignored bad PDB record found on line 100124
ATOM 1871b OH2 TIP3W1812 -68.000 -19.508 12.645 0.00 0.00 WT2
Ignored bad PDB record found on line 100125
ATOM 1871c H1 TIP3W1812 -67.515 -19.239 11.865 0.00 0.00 WT2
Ignored bad PDB record found on line 100126
ATOM 1871d H2 TIP3W1812 -68.079 -18.709 13.166 0.00 0.00 WT2
Ignored bad PDB record found on line 100127
ATOM 1871e OH2 TIP3W1813 -11.457 -35.501 -58.918 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18720
Duplicate atom serial number found: 18721
Duplicate atom serial number found: 18722
Duplicate atom serial number found: 18723
Duplicate atom serial number found: 18724
5 messages similar to the above omitted
Ignored bad PDB record found on line 100139
ATOM 1872a OH2 TIP3W1817 -57.920 208.591 -32.188 0.00 0.00 WT2
Ignored bad PDB record found on line 100140
ATOM 1872b H1 TIP3W1817 -58.060 209.046 -31.357 0.00 0.00 WT2
Ignored bad PDB record found on line 100141
ATOM 1872c H2 TIP3W1817 -57.980 207.662 -31.966 0.00 0.00 WT2
Ignored bad PDB record found on line 100142
ATOM 1872d OH2 TIP3W1818 159.185 -40.185 14.307 0.00 0.00 WT2
Ignored bad PDB record found on line 100143
ATOM 1872e H1 TIP3W1818 158.634 -39.583 13.806 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18730
Duplicate atom serial number found: 18731
Duplicate atom serial number found: 18732
Duplicate atom serial number found: 18733
Duplicate atom serial number found: 18734
5 messages similar to the above omitted
Ignored bad PDB record found on line 100155
ATOM 1873a H1 TIP3W1823 -59.481 -3.310 85.508 0.00 0.00 WT2
Ignored bad PDB record found on line 100156
ATOM 1873b H2 TIP3W1823 -60.975 -3.085 85.413 0.00 0.00 WT2
Ignored bad PDB record found on line 100157
ATOM 1873c OH2 TIP3W1824 6.388 -58.922 9.697 0.00 0.00 WT2
Ignored bad PDB record found on line 100158
ATOM 1873d H1 TIP3W1824 7.121 -59.505 9.894 0.00 0.00 WT2
Ignored bad PDB record found on line 100159
ATOM 1873e H2 TIP3W1824 5.948 -58.798 10.538 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18740
Duplicate atom serial number found: 18741
Duplicate atom serial number found: 18742
Duplicate atom serial number found: 18743
Duplicate atom serial number found: 18744
5 messages similar to the above omitted
Ignored bad PDB record found on line 100171
ATOM 1874a H2 TIP3W1828 -61.419 201.471 -39.787 0.00 0.00 WT2
Ignored bad PDB record found on line 100172
ATOM 1874b OH2 TIP3W1829 -23.542 183.261 -21.971 0.00 0.00 WT2
Ignored bad PDB record found on line 100173
ATOM 1874c H1 TIP3W1829 -23.555 184.107 -21.523 0.00 0.00 WT2
Ignored bad PDB record found on line 100174
ATOM 1874d H2 TIP3W1829 -22.744 183.282 -22.499 0.00 0.00 WT2
Ignored bad PDB record found on line 100175
ATOM 1874e OH2 TIP3W1830 9.722 183.894 -95.220 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18750
Duplicate atom serial number found: 18751
Duplicate atom serial number found: 18752
Duplicate atom serial number found: 18753
Duplicate atom serial number found: 18754
5 messages similar to the above omitted
Ignored bad PDB record found on line 100187
ATOM 1875a OH2 TIP3W1834 -56.686 43.167 -15.128 0.00 0.00 WT2
Ignored bad PDB record found on line 100188
ATOM 1875b H1 TIP3W1834 -56.055 43.806 -15.458 0.00 0.00 WT2
Ignored bad PDB record found on line 100189
ATOM 1875c H2 TIP3W1834 -56.472 43.075 -14.200 0.00 0.00 WT2
Ignored bad PDB record found on line 100190
ATOM 1875d OH2 TIP3W1835 -24.478 -69.843 -73.717 0.00 0.00 WT2
Ignored bad PDB record found on line 100191
ATOM 1875e H1 TIP3W1835 -23.907 -69.363 -74.317 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18760
Duplicate atom serial number found: 18761
Duplicate atom serial number found: 18762
Duplicate atom serial number found: 18763
Duplicate atom serial number found: 18764
5 messages similar to the above omitted
Ignored bad PDB record found on line 100203
ATOM 1876a H1 TIP3W1839 -35.219 210.902 63.823 0.00 0.00 WT2
Ignored bad PDB record found on line 100204
ATOM 1876b H2 TIP3W1839 -35.882 210.172 62.675 0.00 0.00 WT2
Ignored bad PDB record found on line 100205
ATOM 1876c OH2 TIP3W1840 144.830 -56.470 -9.722 0.00 0.00 WT2
Ignored bad PDB record found on line 100206
ATOM 1876d H1 TIP3W1840 144.712 -56.079 -8.856 0.00 0.00 WT2
Ignored bad PDB record found on line 100207
ATOM 1876e H2 TIP3W1840 145.079 -57.377 -9.544 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18770
Duplicate atom serial number found: 18771
Duplicate atom serial number found: 18772
Duplicate atom serial number found: 18773
Duplicate atom serial number found: 18774
5 messages similar to the above omitted
Ignored bad PDB record found on line 100219
ATOM 1877a H2 TIP3W1844 175.176 187.124 8.983 0.00 0.00 WT2
Ignored bad PDB record found on line 100220
ATOM 1877b OH2 TIP3W1846 157.793 -53.252 44.480 0.00 0.00 WT2
Ignored bad PDB record found on line 100221
ATOM 1877c H1 TIP3W1846 157.264 -52.528 44.142 0.00 0.00 WT2
Ignored bad PDB record found on line 100222
ATOM 1877d H2 TIP3W1846 158.307 -53.545 43.727 0.00 0.00 WT2
Ignored bad PDB record found on line 100223
ATOM 1877e OH2 TIP3W1847 98.792 -67.456 -88.063 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18780
Duplicate atom serial number found: 18781
Duplicate atom serial number found: 18782
Duplicate atom serial number found: 18783
Duplicate atom serial number found: 18784
5 messages similar to the above omitted
Ignored bad PDB record found on line 100235
ATOM 1878a OH2 TIP3W1852 135.205 -36.461 -66.872 0.00 0.00 WT2
Ignored bad PDB record found on line 100236
ATOM 1878b H1 TIP3W1852 136.052 -36.641 -66.466 0.00 0.00 WT2
Ignored bad PDB record found on line 100237
ATOM 1878c H2 TIP3W1852 135.299 -36.772 -67.772 0.00 0.00 WT2
Ignored bad PDB record found on line 100238
ATOM 1878d OH2 TIP3W1853 -7.419 -62.665 -34.801 0.00 0.00 WT2
Ignored bad PDB record found on line 100239
ATOM 1878e H1 TIP3W1853 -7.173 -61.795 -35.115 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18790
Duplicate atom serial number found: 18791
Duplicate atom serial number found: 18792
Duplicate atom serial number found: 18793
Duplicate atom serial number found: 18794
5 messages similar to the above omitted
Ignored bad PDB record found on line 100251
ATOM 1879a H1 TIP3W1857 10.833 205.287 -9.337 0.00 0.00 WT2
Ignored bad PDB record found on line 100252
ATOM 1879b H2 TIP3W1857 9.781 205.078 -8.268 0.00 0.00 WT2
Ignored bad PDB record found on line 100253
ATOM 1879c OH2 TIP3W1858 -46.420 -58.396 80.710 0.00 0.00 WT2
Ignored bad PDB record found on line 100254
ATOM 1879d H1 TIP3W1858 -45.624 -58.828 80.401 0.00 0.00 WT2
Ignored bad PDB record found on line 100255
ATOM 1879e H2 TIP3W1858 -46.860 -59.057 81.244 0.00 0.00 WT2
97 messages similar to the above omitted
Duplicate atom serial number found: 18800
Duplicate atom serial number found: 18801
Duplicate atom serial number found: 18802
Duplicate atom serial number found: 18803
Duplicate atom serial number found: 18804
5 messages similar to the above omitted
Ignored bad PDB record found on line 100363
ATOM 1880a H2 TIP3W1894 165.394 -50.744 -30.683 0.00 0.00 WT2
Ignored bad PDB record found on line 100364
ATOM 1880b OH2 TIP3W1895 -13.196 3.964 -22.110 0.00 0.00 WT2
Ignored bad PDB record found on line 100365
ATOM 1880c H1 TIP3W1895 -12.441 3.843 -22.685 0.00 0.00 WT2
Ignored bad PDB record found on line 100366
ATOM 1880d H2 TIP3W1895 -13.867 3.383 -22.469 0.00 0.00 WT2
Ignored bad PDB record found on line 100367
ATOM 1880e OH2 TIP3W1896 -22.231 -61.374 -15.150 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18810
Duplicate atom serial number found: 18811
Duplicate atom serial number found: 18812
Duplicate atom serial number found: 18813
Duplicate atom serial number found: 18814
5 messages similar to the above omitted
Ignored bad PDB record found on line 100379
ATOM 1881a OH2 TIP3W1900 -58.408 -21.854 -3.051 0.00 0.00 WT2
Ignored bad PDB record found on line 100380
ATOM 1881b H1 TIP3W1900 -58.900 -21.091 -2.749 0.00 0.00 WT2
Ignored bad PDB record found on line 100381
ATOM 1881c H2 TIP3W1900 -57.736 -21.493 -3.630 0.00 0.00 WT2
Ignored bad PDB record found on line 100382
ATOM 1881d OH2 TIP3W1901 -38.877 -24.047 34.606 0.00 0.00 WT2
Ignored bad PDB record found on line 100383
ATOM 1881e H1 TIP3W1901 -37.941 -24.178 34.759 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18820
Duplicate atom serial number found: 18821
Duplicate atom serial number found: 18822
Duplicate atom serial number found: 18823
Duplicate atom serial number found: 18824
5 messages similar to the above omitted
Ignored bad PDB record found on line 100395
ATOM 1882a H1 TIP3W1905 152.693 203.754 -1.395 0.00 0.00 WT2
Ignored bad PDB record found on line 100396
ATOM 1882b H2 TIP3W1905 152.316 205.200 -1.153 0.00 0.00 WT2
Ignored bad PDB record found on line 100397
ATOM 1882c OH2 TIP3W1906 -29.730 -36.042 -62.917 0.00 0.00 WT2
Ignored bad PDB record found on line 100398
ATOM 1882d H1 TIP3W1906 -29.203 -36.589 -63.500 0.00 0.00 WT2
Ignored bad PDB record found on line 100399
ATOM 1882e H2 TIP3W1906 -29.771 -36.535 -62.097 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18830
Duplicate atom serial number found: 18831
Duplicate atom serial number found: 18832
Duplicate atom serial number found: 18833
Duplicate atom serial number found: 18834
5 messages similar to the above omitted
Ignored bad PDB record found on line 100411
ATOM 1883a H2 TIP3W1910 156.609 -5.686 33.549 0.00 0.00 WT2
Ignored bad PDB record found on line 100412
ATOM 1883b OH2 TIP3W1911 160.053 209.626 -55.095 0.00 0.00 WT2
Ignored bad PDB record found on line 100413
ATOM 1883c H1 TIP3W1911 160.509 208.807 -55.292 0.00 0.00 WT2
Ignored bad PDB record found on line 100414
ATOM 1883d H2 TIP3W1911 159.221 209.556 -55.563 0.00 0.00 WT2
Ignored bad PDB record found on line 100415
ATOM 1883e OH2 TIP3W1912 -42.270 -68.325 30.633 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18840
Duplicate atom serial number found: 18841
Duplicate atom serial number found: 18842
Duplicate atom serial number found: 18843
Duplicate atom serial number found: 18844
5 messages similar to the above omitted
Ignored bad PDB record found on line 100427
ATOM 1884a OH2 TIP3W1916 131.151 -31.094 31.948 0.00 0.00 WT2
Ignored bad PDB record found on line 100428
ATOM 1884b H1 TIP3W1916 130.500 -31.795 31.940 0.00 0.00 WT2
Ignored bad PDB record found on line 100429
ATOM 1884c H2 TIP3W1916 131.425 -31.010 31.034 0.00 0.00 WT2
Ignored bad PDB record found on line 100430
ATOM 1884d OH2 TIP3W1917 -56.517 -24.214 -8.725 0.00 0.00 WT2
Ignored bad PDB record found on line 100431
ATOM 1884e H1 TIP3W1917 -57.355 -23.913 -8.374 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18850
Duplicate atom serial number found: 18851
Duplicate atom serial number found: 18852
Duplicate atom serial number found: 18853
Duplicate atom serial number found: 18854
5 messages similar to the above omitted
Ignored bad PDB record found on line 100443
ATOM 1885a H1 TIP3W1921 -47.485 -32.228 -6.105 0.00 0.00 WT2
Ignored bad PDB record found on line 100444
ATOM 1885b H2 TIP3W1921 -46.969 -31.408 -7.268 0.00 0.00 WT2
Ignored bad PDB record found on line 100445
ATOM 1885c OH2 TIP3W1922 -44.191 -25.792 70.179 0.00 0.00 WT2
Ignored bad PDB record found on line 100446
ATOM 1885d H1 TIP3W1922 -44.418 -25.942 71.097 0.00 0.00 WT2
Ignored bad PDB record found on line 100447
ATOM 1885e H2 TIP3W1922 -45.026 -25.840 69.714 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18860
Duplicate atom serial number found: 18861
Duplicate atom serial number found: 18862
Duplicate atom serial number found: 18863
Duplicate atom serial number found: 18864
5 messages similar to the above omitted
Ignored bad PDB record found on line 100459
ATOM 1886a H2 TIP3W1926 -56.158 206.224 22.583 0.00 0.00 WT2
Ignored bad PDB record found on line 100460
ATOM 1886b OH2 TIP3W1927 24.430 -27.913 56.457 0.00 0.00 WT2
Ignored bad PDB record found on line 100461
ATOM 1886c H1 TIP3W1927 24.258 -28.227 55.569 0.00 0.00 WT2
Ignored bad PDB record found on line 100462
ATOM 1886d H2 TIP3W1927 24.234 -26.977 56.422 0.00 0.00 WT2
Ignored bad PDB record found on line 100463
ATOM 1886e OH2 TIP3W1928 -20.695 -57.695 -12.254 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18870
Duplicate atom serial number found: 18871
Duplicate atom serial number found: 18872
Duplicate atom serial number found: 18873
Duplicate atom serial number found: 18874
5 messages similar to the above omitted
Ignored bad PDB record found on line 100475
ATOM 1887a OH2 TIP3W1932 141.262 -30.239 -14.147 0.00 0.00 WT2
Ignored bad PDB record found on line 100476
ATOM 1887b H1 TIP3W1932 141.055 -31.145 -14.376 0.00 0.00 WT2
Ignored bad PDB record found on line 100477
ATOM 1887c H2 TIP3W1932 141.874 -29.954 -14.825 0.00 0.00 WT2
Ignored bad PDB record found on line 100478
ATOM 1887d OH2 TIP3W1933 153.611 -69.157 -1.633 0.00 0.00 WT2
Ignored bad PDB record found on line 100479
ATOM 1887e H1 TIP3W1933 152.795 -68.854 -2.031 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18880
Duplicate atom serial number found: 18881
Duplicate atom serial number found: 18882
Duplicate atom serial number found: 18883
Duplicate atom serial number found: 18884
5 messages similar to the above omitted
Ignored bad PDB record found on line 100491
ATOM 1888a H1 TIP3W1937 -32.156 -31.546 -38.074 0.00 0.00 WT2
Ignored bad PDB record found on line 100492
ATOM 1888b H2 TIP3W1937 -30.843 -30.973 -37.586 0.00 0.00 WT2
Ignored bad PDB record found on line 100493
ATOM 1888c OH2 TIP3W1938 171.672 207.964 -48.380 0.00 0.00 WT2
Ignored bad PDB record found on line 100494
ATOM 1888d H1 TIP3W1938 172.422 207.412 -48.600 0.00 0.00 WT2
Ignored bad PDB record found on line 100495
ATOM 1888e H2 TIP3W1938 170.969 207.652 -48.949 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18890
Duplicate atom serial number found: 18891
Duplicate atom serial number found: 18892
Duplicate atom serial number found: 18893
Duplicate atom serial number found: 18894
5 messages similar to the above omitted
Ignored bad PDB record found on line 100507
ATOM 1889a H2 TIP3W1942 147.935 -40.626 -15.396 0.00 0.00 WT2
Ignored bad PDB record found on line 100508
ATOM 1889b OH2 TIP3W1943 -32.810 3.074 -58.259 0.00 0.00 WT2
Ignored bad PDB record found on line 100509
ATOM 1889c H1 TIP3W1943 -33.313 2.571 -58.900 0.00 0.00 WT2
Ignored bad PDB record found on line 100510
ATOM 1889d H2 TIP3W1943 -33.426 3.238 -57.545 0.00 0.00 WT2
Ignored bad PDB record found on line 100511
ATOM 1889e OH2 TIP3W1944 174.571 163.451 -22.780 0.00 0.00 WT2
97 messages similar to the above omitted
Duplicate atom serial number found: 18900
Duplicate atom serial number found: 18901
Duplicate atom serial number found: 18902
Duplicate atom serial number found: 18903
Duplicate atom serial number found: 18904
5 messages similar to the above omitted
Ignored bad PDB record found on line 100619
ATOM 1890a OH2 TIP3W1980 167.840 -19.575 34.727 0.00 0.00 WT2
Ignored bad PDB record found on line 100620
ATOM 1890b H1 TIP3W1980 167.504 -19.480 35.618 0.00 0.00 WT2
Ignored bad PDB record found on line 100621
ATOM 1890c H2 TIP3W1980 168.627 -19.031 34.707 0.00 0.00 WT2
Ignored bad PDB record found on line 100622
ATOM 1890d OH2 TIP3W1981 -39.195 28.297 -39.798 0.00 0.00 WT2
Ignored bad PDB record found on line 100623
ATOM 1890e H1 TIP3W1981 -39.997 27.966 -39.394 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18910
Duplicate atom serial number found: 18911
Duplicate atom serial number found: 18912
Duplicate atom serial number found: 18913
Duplicate atom serial number found: 18914
5 messages similar to the above omitted
Ignored bad PDB record found on line 100635
ATOM 1891a H1 TIP3W1985 -42.329 205.332 39.911 0.00 0.00 WT2
Ignored bad PDB record found on line 100636
ATOM 1891b H2 TIP3W1985 -41.007 204.595 39.859 0.00 0.00 WT2
Ignored bad PDB record found on line 100637
ATOM 1891c OH2 TIP3W1986 -22.879 12.691 -22.359 0.00 0.00 WT2
Ignored bad PDB record found on line 100638
ATOM 1891d H1 TIP3W1986 -22.481 12.660 -23.229 0.00 0.00 WT2
Ignored bad PDB record found on line 100639
ATOM 1891e H2 TIP3W1986 -22.860 11.784 -22.054 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18920
Duplicate atom serial number found: 18921
Duplicate atom serial number found: 18922
Duplicate atom serial number found: 18923
Duplicate atom serial number found: 18924
5 messages similar to the above omitted
Ignored bad PDB record found on line 100651
ATOM 1892a H2 TIP3W1990 -42.761 198.274 21.765 0.00 0.00 WT2
Ignored bad PDB record found on line 100652
ATOM 1892b OH2 TIP3W1991 -24.393 -53.568 48.910 0.00 0.00 WT2
Ignored bad PDB record found on line 100653
ATOM 1892c H1 TIP3W1991 -24.507 -54.228 48.226 0.00 0.00 WT2
Ignored bad PDB record found on line 100654
ATOM 1892d H2 TIP3W1991 -24.963 -52.846 48.645 0.00 0.00 WT2
Ignored bad PDB record found on line 100655
ATOM 1892e OH2 TIP3W1992 158.179 -58.498 13.764 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18930
Duplicate atom serial number found: 18931
Duplicate atom serial number found: 18932
Duplicate atom serial number found: 18933
Duplicate atom serial number found: 18934
5 messages similar to the above omitted
Ignored bad PDB record found on line 100667
ATOM 1893a OH2 TIP3W1996 135.120 -40.674 45.762 0.00 0.00 WT2
Ignored bad PDB record found on line 100668
ATOM 1893b H1 TIP3W1996 134.363 -40.458 46.306 0.00 0.00 WT2
Ignored bad PDB record found on line 100669
ATOM 1893c H2 TIP3W1996 135.600 -39.850 45.681 0.00 0.00 WT2
Ignored bad PDB record found on line 100670
ATOM 1893d OH2 TIP3W1997 -21.725 -29.203 -26.765 0.00 0.00 WT2
Ignored bad PDB record found on line 100671
ATOM 1893e H1 TIP3W1997 -22.649 -29.243 -27.011 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18940
Duplicate atom serial number found: 18941
Duplicate atom serial number found: 18942
Duplicate atom serial number found: 18943
Duplicate atom serial number found: 18944
5 messages similar to the above omitted
Ignored bad PDB record found on line 100683
ATOM 1894a H1 TIP3W2001 164.543 28.182 -81.602 0.00 0.00 WT2
Ignored bad PDB record found on line 100684
ATOM 1894b H2 TIP3W2001 165.463 27.412 -80.678 0.00 0.00 WT2
Ignored bad PDB record found on line 100685
ATOM 1894c OH2 TIP3W2002 147.996 2.311 -63.509 0.00 0.00 WT2
Ignored bad PDB record found on line 100686
ATOM 1894d H1 TIP3W2002 147.908 2.293 -64.462 0.00 0.00 WT2
Ignored bad PDB record found on line 100687
ATOM 1894e H2 TIP3W2002 147.276 1.766 -63.191 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18950
Duplicate atom serial number found: 18951
Duplicate atom serial number found: 18952
Duplicate atom serial number found: 18953
Duplicate atom serial number found: 18954
5 messages similar to the above omitted
Ignored bad PDB record found on line 100699
ATOM 1895a H2 TIP3W2006 5.904 -57.173 -38.265 0.00 0.00 WT2
Ignored bad PDB record found on line 100700
ATOM 1895b OH2 TIP3W2007 -58.446 171.324 6.936 0.00 0.00 WT2
Ignored bad PDB record found on line 100701
ATOM 1895c H1 TIP3W2007 -58.478 171.888 7.709 0.00 0.00 WT2
Ignored bad PDB record found on line 100702
ATOM 1895d H2 TIP3W2007 -59.364 171.153 6.725 0.00 0.00 WT2
Ignored bad PDB record found on line 100703
ATOM 1895e OH2 TIP3W2008 -24.737 -46.853 36.835 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18960
Duplicate atom serial number found: 18961
Duplicate atom serial number found: 18962
Duplicate atom serial number found: 18963
Duplicate atom serial number found: 18964
5 messages similar to the above omitted
Ignored bad PDB record found on line 100715
ATOM 1896a OH2 TIP3W2012 -6.597 168.958 -45.945 0.00 0.00 WT2
Ignored bad PDB record found on line 100716
ATOM 1896b H1 TIP3W2012 -6.484 169.909 -45.969 0.00 0.00 WT2
Ignored bad PDB record found on line 100717
ATOM 1896c H2 TIP3W2012 -7.415 168.825 -45.467 0.00 0.00 WT2
Ignored bad PDB record found on line 100718
ATOM 1896d OH2 TIP3W2013 156.886 -18.219 -32.789 0.00 0.00 WT2
Ignored bad PDB record found on line 100719
ATOM 1896e H1 TIP3W2013 156.315 -18.843 -33.238 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18970
Duplicate atom serial number found: 18971
Duplicate atom serial number found: 18972
Duplicate atom serial number found: 18973
Duplicate atom serial number found: 18974
5 messages similar to the above omitted
Ignored bad PDB record found on line 100731
ATOM 1897a H1 TIP3W2017 175.682 -50.204 86.646 0.00 0.00 WT2
Ignored bad PDB record found on line 100732
ATOM 1897b H2 TIP3W2017 175.236 -49.061 85.760 0.00 0.00 WT2
Ignored bad PDB record found on line 100733
ATOM 1897c OH2 TIP3W2018 -26.598 -11.184 -60.419 0.00 0.00 WT2
Ignored bad PDB record found on line 100734
ATOM 1897d H1 TIP3W2018 -26.892 -10.315 -60.146 0.00 0.00 WT2
Ignored bad PDB record found on line 100735
ATOM 1897e H2 TIP3W2018 -26.330 -11.072 -61.331 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18980
Duplicate atom serial number found: 18981
Duplicate atom serial number found: 18982
Duplicate atom serial number found: 18983
Duplicate atom serial number found: 18984
5 messages similar to the above omitted
Ignored bad PDB record found on line 100747
ATOM 1898a H2 TIP3W2022 106.464 -17.012 -68.025 0.00 0.00 WT2
Ignored bad PDB record found on line 100748
ATOM 1898b OH2 TIP3W2023 158.870 -32.961 -24.087 0.00 0.00 WT2
Ignored bad PDB record found on line 100749
ATOM 1898c H1 TIP3W2023 158.932 -33.916 -24.056 0.00 0.00 WT2
Ignored bad PDB record found on line 100750
ATOM 1898d H2 TIP3W2023 159.340 -32.716 -24.884 0.00 0.00 WT2
Ignored bad PDB record found on line 100751
ATOM 1898e OH2 TIP3W2024 173.326 -39.513 26.560 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 18990
Duplicate atom serial number found: 18991
Duplicate atom serial number found: 18992
Duplicate atom serial number found: 18993
Duplicate atom serial number found: 18994
5 messages similar to the above omitted
Ignored bad PDB record found on line 100763
ATOM 1899a OH2 TIP3W2028 -4.098 -21.995 -29.903 0.00 0.00 WT2
Ignored bad PDB record found on line 100764
ATOM 1899b H1 TIP3W2028 -4.549 -21.510 -29.212 0.00 0.00 WT2
Ignored bad PDB record found on line 100765
ATOM 1899c H2 TIP3W2028 -4.323 -22.911 -29.739 0.00 0.00 WT2
Ignored bad PDB record found on line 100766
ATOM 1899d OH2 TIP3W2029 -32.826 -8.567 -7.055 0.00 0.00 WT2
Ignored bad PDB record found on line 100767
ATOM 1899e H1 TIP3W2029 -33.608 -8.169 -7.437 0.00 0.00 WT2
1633 messages similar to the above omitted
Duplicate atom serial number found: 19000
Duplicate atom serial number found: 19001
Duplicate atom serial number found: 19002
Duplicate atom serial number found: 19003
Duplicate atom serial number found: 19004
5 messages similar to the above omitted
Ignored bad PDB record found on line 102411
ATOM 1900a H1 TIP3W2583 112.680 -58.664 69.138 0.00 0.00 WT2
Ignored bad PDB record found on line 102412
ATOM 1900b H2 TIP3W2583 112.307 -57.395 68.402 0.00 0.00 WT2
Ignored bad PDB record found on line 102413
ATOM 1900c OH2 TIP3W2584 -67.719 -55.734 -34.592 0.00 0.00 WT2
Ignored bad PDB record found on line 102414
ATOM 1900d H1 TIP3W2584 -68.254 -55.604 -33.808 0.00 0.00 WT2
Ignored bad PDB record found on line 102415
ATOM 1900e H2 TIP3W2584 -67.987 -55.032 -35.184 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19010
Duplicate atom serial number found: 19011
Duplicate atom serial number found: 19012
Duplicate atom serial number found: 19013
Duplicate atom serial number found: 19014
5 messages similar to the above omitted
Ignored bad PDB record found on line 102427
ATOM 1901a H2 TIP3W2588 14.116 -10.890 -66.217 0.00 0.00 WT2
Ignored bad PDB record found on line 102428
ATOM 1901b OH2 TIP3W2589 -57.339 -28.045 -9.235 0.00 0.00 WT2
Ignored bad PDB record found on line 102429
ATOM 1901c H1 TIP3W2589 -56.784 -28.768 -9.527 0.00 0.00 WT2
Ignored bad PDB record found on line 102430
ATOM 1901d H2 TIP3W2589 -58.215 -28.274 -9.546 0.00 0.00 WT2
Ignored bad PDB record found on line 102431
ATOM 1901e OH2 TIP3W2590 -66.912 204.237 53.132 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19020
Duplicate atom serial number found: 19021
Duplicate atom serial number found: 19022
Duplicate atom serial number found: 19023
Duplicate atom serial number found: 19024
5 messages similar to the above omitted
Ignored bad PDB record found on line 102443
ATOM 1902a OH2 TIP3W2594 -32.845 -5.384 -2.351 0.00 0.00 WT2
Ignored bad PDB record found on line 102444
ATOM 1902b H1 TIP3W2594 -32.770 -4.523 -2.763 0.00 0.00 WT2
Ignored bad PDB record found on line 102445
ATOM 1902c H2 TIP3W2594 -33.522 -5.273 -1.684 0.00 0.00 WT2
Ignored bad PDB record found on line 102446
ATOM 1902d OH2 TIP3W2595 -47.085 39.628 4.780 0.00 0.00 WT2
Ignored bad PDB record found on line 102447
ATOM 1902e H1 TIP3W2595 -46.615 38.838 4.514 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19030
Duplicate atom serial number found: 19031
Duplicate atom serial number found: 19032
Duplicate atom serial number found: 19033
Duplicate atom serial number found: 19034
5 messages similar to the above omitted
Ignored bad PDB record found on line 102459
ATOM 1903a H1 TIP3W2600 -40.144 9.230 64.655 0.00 0.00 WT2
Ignored bad PDB record found on line 102460
ATOM 1903b H2 TIP3W2600 -40.680 8.012 63.933 0.00 0.00 WT2
Ignored bad PDB record found on line 102461
ATOM 1903c OH2 TIP3W2601 -31.360 -29.565 -21.938 0.00 0.00 WT2
Ignored bad PDB record found on line 102462
ATOM 1903d H1 TIP3W2601 -32.298 -29.552 -22.130 0.00 0.00 WT2
Ignored bad PDB record found on line 102463
ATOM 1903e H2 TIP3W2601 -30.940 -29.429 -22.787 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19040
Duplicate atom serial number found: 19041
Duplicate atom serial number found: 19042
Duplicate atom serial number found: 19043
Duplicate atom serial number found: 19044
5 messages similar to the above omitted
Ignored bad PDB record found on line 102475
ATOM 1904a H2 TIP3W2605 -18.251 -40.968 -33.257 0.00 0.00 WT2
Ignored bad PDB record found on line 102476
ATOM 1904b OH2 TIP3W2606 147.954 29.883 -53.652 0.00 0.00 WT2
Ignored bad PDB record found on line 102477
ATOM 1904c H1 TIP3W2606 148.691 29.632 -53.094 0.00 0.00 WT2
Ignored bad PDB record found on line 102478
ATOM 1904d H2 TIP3W2606 147.468 29.069 -53.788 0.00 0.00 WT2
Ignored bad PDB record found on line 102479
ATOM 1904e OH2 TIP3W2607 -55.656 167.823 -34.912 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19050
Duplicate atom serial number found: 19051
Duplicate atom serial number found: 19052
Duplicate atom serial number found: 19053
Duplicate atom serial number found: 19054
5 messages similar to the above omitted
Ignored bad PDB record found on line 102491
ATOM 1905a OH2 TIP3W2611 -31.036 0.604 -59.536 0.00 0.00 WT2
Ignored bad PDB record found on line 102492
ATOM 1905b H1 TIP3W2611 -31.102 1.364 -58.957 0.00 0.00 WT2
Ignored bad PDB record found on line 102493
ATOM 1905c H2 TIP3W2611 -30.918 0.978 -60.409 0.00 0.00 WT2
Ignored bad PDB record found on line 102494
ATOM 1905d OH2 TIP3W2612 160.270 -0.203 42.148 0.00 0.00 WT2
Ignored bad PDB record found on line 102495
ATOM 1905e H1 TIP3W2612 159.766 0.246 41.470 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19060
Duplicate atom serial number found: 19061
Duplicate atom serial number found: 19062
Duplicate atom serial number found: 19063
Duplicate atom serial number found: 19064
5 messages similar to the above omitted
Ignored bad PDB record found on line 102507
ATOM 1906a H1 TIP3W2616 -49.481 -20.777 16.980 0.00 0.00 WT2
Ignored bad PDB record found on line 102508
ATOM 1906b H2 TIP3W2616 -49.478 -19.700 18.043 0.00 0.00 WT2
Ignored bad PDB record found on line 102509
ATOM 1906c OH2 TIP3W2617 -68.666 0.265 28.449 0.00 0.00 WT2
Ignored bad PDB record found on line 102510
ATOM 1906d H1 TIP3W2617 -67.869 0.430 28.952 0.00 0.00 WT2
Ignored bad PDB record found on line 102511
ATOM 1906e H2 TIP3W2617 -68.688 -0.685 28.339 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19070
Duplicate atom serial number found: 19071
Duplicate atom serial number found: 19072
Duplicate atom serial number found: 19073
Duplicate atom serial number found: 19074
5 messages similar to the above omitted
Ignored bad PDB record found on line 102523
ATOM 1907a H2 TIP3W2621 -37.371 181.928 7.052 0.00 0.00 WT2
Ignored bad PDB record found on line 102524
ATOM 1907b OH2 TIP3W2622 -35.740 -53.669 51.104 0.00 0.00 WT2
Ignored bad PDB record found on line 102525
ATOM 1907c H1 TIP3W2622 -34.848 -54.002 51.007 0.00 0.00 WT2
Ignored bad PDB record found on line 102526
ATOM 1907d H2 TIP3W2622 -35.627 -52.750 51.349 0.00 0.00 WT2
Ignored bad PDB record found on line 102527
ATOM 1907e OH2 TIP3W2623 147.376 153.945 -17.165 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19080
Duplicate atom serial number found: 19081
Duplicate atom serial number found: 19082
Duplicate atom serial number found: 19083
Duplicate atom serial number found: 19084
5 messages similar to the above omitted
Ignored bad PDB record found on line 102539
ATOM 1908a OH2 TIP3W2628 157.882 167.926 -54.730 0.00 0.00 WT2
Ignored bad PDB record found on line 102540
ATOM 1908b H1 TIP3W2628 157.305 168.665 -54.920 0.00 0.00 WT2
Ignored bad PDB record found on line 102541
ATOM 1908c H2 TIP3W2628 158.037 167.978 -53.787 0.00 0.00 WT2
Ignored bad PDB record found on line 102542
ATOM 1908d OH2 TIP3W2629 129.461 195.735 -5.350 0.00 0.00 WT2
Ignored bad PDB record found on line 102543
ATOM 1908e H1 TIP3W2629 128.592 195.528 -5.006 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19090
Duplicate atom serial number found: 19091
Duplicate atom serial number found: 19092
Duplicate atom serial number found: 19093
Duplicate atom serial number found: 19094
5 messages similar to the above omitted
Ignored bad PDB record found on line 102555
ATOM 1909a H1 TIP3W2634 128.989 -29.214 -21.712 0.00 0.00 WT2
Ignored bad PDB record found on line 102556
ATOM 1909b H2 TIP3W2634 127.889 -28.948 -20.707 0.00 0.00 WT2
Ignored bad PDB record found on line 102557
ATOM 1909c OH2 TIP3W2635 -55.633 -45.527 -35.331 0.00 0.00 WT2
Ignored bad PDB record found on line 102558
ATOM 1909d H1 TIP3W2635 -55.392 -46.451 -35.255 0.00 0.00 WT2
Ignored bad PDB record found on line 102559
ATOM 1909e H2 TIP3W2635 -56.110 -45.471 -36.159 0.00 0.00 WT2
97 messages similar to the above omitted
Duplicate atom serial number found: 19100
Duplicate atom serial number found: 19101
Duplicate atom serial number found: 19102
Duplicate atom serial number found: 19103
Duplicate atom serial number found: 19104
5 messages similar to the above omitted
Ignored bad PDB record found on line 102667
ATOM 1910a H2 TIP3W2672 57.093 -45.113 2.222 0.00 0.00 WT2
Ignored bad PDB record found on line 102668
ATOM 1910b OH2 TIP3W2673 116.450 -68.963 -16.213 0.00 0.00 WT2
Ignored bad PDB record found on line 102669
ATOM 1910c H1 TIP3W2673 116.362 -69.286 -17.110 0.00 0.00 WT2
Ignored bad PDB record found on line 102670
ATOM 1910d H2 TIP3W2673 117.209 -68.381 -16.241 0.00 0.00 WT2
Ignored bad PDB record found on line 102671
ATOM 1910e OH2 TIP3W2674 4.418 -46.426 43.060 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19110
Duplicate atom serial number found: 19111
Duplicate atom serial number found: 19112
Duplicate atom serial number found: 19113
Duplicate atom serial number found: 19114
5 messages similar to the above omitted
Ignored bad PDB record found on line 102683
ATOM 1911a OH2 TIP3W2678 -21.345 209.890 50.947 0.00 0.00 WT2
Ignored bad PDB record found on line 102684
ATOM 1911b H1 TIP3W2678 -22.258 209.608 51.002 0.00 0.00 WT2
Ignored bad PDB record found on line 102685
ATOM 1911c H2 TIP3W2678 -21.330 210.514 50.221 0.00 0.00 WT2
Ignored bad PDB record found on line 102686
ATOM 1911d OH2 TIP3W2679 -11.345 -26.033 -48.782 0.00 0.00 WT2
Ignored bad PDB record found on line 102687
ATOM 1911e H1 TIP3W2679 -11.744 -26.902 -48.735 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19120
Duplicate atom serial number found: 19121
Duplicate atom serial number found: 19122
Duplicate atom serial number found: 19123
Duplicate atom serial number found: 19124
5 messages similar to the above omitted
Ignored bad PDB record found on line 102699
ATOM 1912a H1 TIP3W2683 6.578 179.633 15.117 0.00 0.00 WT2
Ignored bad PDB record found on line 102700
ATOM 1912b H2 TIP3W2683 5.726 180.383 14.116 0.00 0.00 WT2
Ignored bad PDB record found on line 102701
ATOM 1912c OH2 TIP3W2684 166.033 -54.554 18.899 0.00 0.00 WT2
Ignored bad PDB record found on line 102702
ATOM 1912d H1 TIP3W2684 166.457 -53.773 18.544 0.00 0.00 WT2
Ignored bad PDB record found on line 102703
ATOM 1912e H2 TIP3W2684 166.614 -55.275 18.655 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19130
Duplicate atom serial number found: 19131
Duplicate atom serial number found: 19132
Duplicate atom serial number found: 19133
Duplicate atom serial number found: 19134
5 messages similar to the above omitted
Ignored bad PDB record found on line 102715
ATOM 1913a H2 TIP3W2688 152.910 -12.747 -5.354 0.00 0.00 WT2
Ignored bad PDB record found on line 102716
ATOM 1913b OH2 TIP3W2689 143.985 -37.625 -35.292 0.00 0.00 WT2
Ignored bad PDB record found on line 102717
ATOM 1913c H1 TIP3W2689 143.489 -36.938 -34.848 0.00 0.00 WT2
Ignored bad PDB record found on line 102718
ATOM 1913d H2 TIP3W2689 143.652 -38.442 -34.920 0.00 0.00 WT2
Ignored bad PDB record found on line 102719
ATOM 1913e OH2 TIP3W2690 166.611 -31.905 -45.761 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19140
Duplicate atom serial number found: 19141
Duplicate atom serial number found: 19142
Duplicate atom serial number found: 19143
Duplicate atom serial number found: 19144
5 messages similar to the above omitted
Ignored bad PDB record found on line 102731
ATOM 1914a OH2 TIP3W2694 -67.227 210.469 -9.671 0.00 0.00 WT2
Ignored bad PDB record found on line 102732
ATOM 1914b H1 TIP3W2694 -67.298 209.529 -9.840 0.00 0.00 WT2
Ignored bad PDB record found on line 102733
ATOM 1914c H2 TIP3W2694 -67.498 210.571 -8.759 0.00 0.00 WT2
Ignored bad PDB record found on line 102734
ATOM 1914d OH2 TIP3W2695 -31.827 191.114 -29.237 0.00 0.00 WT2
Ignored bad PDB record found on line 102735
ATOM 1914e H1 TIP3W2695 -32.348 190.436 -28.806 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19150
Duplicate atom serial number found: 19151
Duplicate atom serial number found: 19152
Duplicate atom serial number found: 19153
Duplicate atom serial number found: 19154
5 messages similar to the above omitted
Ignored bad PDB record found on line 102747
ATOM 1915a H1 TIP3W2699 -59.842 -44.845 38.188 0.00 0.00 WT2
Ignored bad PDB record found on line 102748
ATOM 1915b H2 TIP3W2699 -59.417 -45.119 39.615 0.00 0.00 WT2
Ignored bad PDB record found on line 102749
ATOM 1915c OH2 TIP3W2700 -16.048 182.168 31.624 0.00 0.00 WT2
Ignored bad PDB record found on line 102750
ATOM 1915d H1 TIP3W2700 -16.977 182.306 31.435 0.00 0.00 WT2
Ignored bad PDB record found on line 102751
ATOM 1915e H2 TIP3W2700 -15.684 183.051 31.695 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19160
Duplicate atom serial number found: 19161
Duplicate atom serial number found: 19162
Duplicate atom serial number found: 19163
Duplicate atom serial number found: 19164
5 messages similar to the above omitted
Ignored bad PDB record found on line 102763
ATOM 1916a H2 TIP3W2704 -14.197 -46.421 -48.680 0.00 0.00 WT2
Ignored bad PDB record found on line 102764
ATOM 1916b OH2 TIP3W2705 163.714 -7.589 92.319 0.00 0.00 WT2
Ignored bad PDB record found on line 102765
ATOM 1916c H1 TIP3W2705 163.412 -7.740 93.215 0.00 0.00 WT2
Ignored bad PDB record found on line 102766
ATOM 1916d H2 TIP3W2705 162.936 -7.720 91.778 0.00 0.00 WT2
Ignored bad PDB record found on line 102767
ATOM 1916e OH2 TIP3W2706 113.571 -52.413 -51.109 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19170
Duplicate atom serial number found: 19171
Duplicate atom serial number found: 19172
Duplicate atom serial number found: 19173
Duplicate atom serial number found: 19174
5 messages similar to the above omitted
Ignored bad PDB record found on line 102779
ATOM 1917a OH2 TIP3W2710 146.659 -20.630 -67.790 0.00 0.00 WT2
Ignored bad PDB record found on line 102780
ATOM 1917b H1 TIP3W2710 147.291 -20.295 -67.154 0.00 0.00 WT2
Ignored bad PDB record found on line 102781
ATOM 1917c H2 TIP3W2710 147.189 -20.866 -68.552 0.00 0.00 WT2
Ignored bad PDB record found on line 102782
ATOM 1917d OH2 TIP3W2711 -19.923 196.540 40.669 0.00 0.00 WT2
Ignored bad PDB record found on line 102783
ATOM 1917e H1 TIP3W2711 -20.179 196.754 39.772 0.00 0.00 WT2
1 messages similar to the above omitted
Duplicate atom serial number found: 19180
Duplicate atom serial number found: 19181
Duplicate atom serial number found: 19182
Duplicate atom serial number found: 19183
Duplicate atom serial number found: 19184
5 messages similar to the above omitted
Ignored bad PDB record found on line 102795
ATOM 1918a H1 TIP3W2715 -12.757 -53.746 -32.131 0.00 0.00 WT2
[much of the log deleted to fit within ticket size limits]
Ignored bad PDB record found on line 628831
ATOM 9985e H2 TIP3W8985 32.893 144.186 84.417 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99860
Duplicate atom serial number found: 99861
Duplicate atom serial number found: 99862
Duplicate atom serial number found: 99863
Duplicate atom serial number found: 99864
5 messages similar to the above omitted
Ignored bad PDB record found on line 628843
ATOM 9986a H2 TIP3W8989 50.431 14.603 129.039 0.00 0.00 WT1C
Ignored bad PDB record found on line 628844
ATOM 9986b OH2 TIP3W8990 24.247 -49.589 -26.616 0.00 0.00 WT1C
Ignored bad PDB record found on line 628845
ATOM 9986c H1 TIP3W8990 23.921 -48.790 -26.203 0.00 0.00 WT1C
Ignored bad PDB record found on line 628846
ATOM 9986d H2 TIP3W8990 23.881 -49.568 -27.501 0.00 0.00 WT1C
Ignored bad PDB record found on line 628847
ATOM 9986e OH2 TIP3W8991 64.412 -69.916 10.151 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99870
Duplicate atom serial number found: 99871
Duplicate atom serial number found: 99872
Duplicate atom serial number found: 99873
Duplicate atom serial number found: 99874
5 messages similar to the above omitted
Ignored bad PDB record found on line 628859
ATOM 9987a OH2 TIP3W8995 6.414 -68.573 32.432 0.00 0.00 WT1C
Ignored bad PDB record found on line 628860
ATOM 9987b H1 TIP3W8995 7.233 -68.401 31.969 0.00 0.00 WT1C
Ignored bad PDB record found on line 628861
ATOM 9987c H2 TIP3W8995 6.536 -69.437 32.825 0.00 0.00 WT1C
Ignored bad PDB record found on line 628862
ATOM 9987d OH2 TIP3W8996 38.240 -6.014 45.498 0.00 0.00 WT1C
Ignored bad PDB record found on line 628863
ATOM 9987e H1 TIP3W8996 38.724 -5.294 45.095 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99880
Duplicate atom serial number found: 99881
Duplicate atom serial number found: 99882
Duplicate atom serial number found: 99883
Duplicate atom serial number found: 99884
5 messages similar to the above omitted
Ignored bad PDB record found on line 628875
ATOM 9988a H1 TIP3W9000 27.809 -39.160 39.441 0.00 0.00 WT1C
Ignored bad PDB record found on line 628876
ATOM 9988b H2 TIP3W9000 29.060 -39.244 40.289 0.00 0.00 WT1C
Ignored bad PDB record found on line 628877
ATOM 9988c OH2 TIP3W9001 81.618 194.283 116.061 0.00 0.00 WT1C
Ignored bad PDB record found on line 628878
ATOM 9988d H1 TIP3W9001 81.977 194.708 115.282 0.00 0.00 WT1C
Ignored bad PDB record found on line 628879
ATOM 9988e H2 TIP3W9001 82.067 193.438 116.101 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99890
Duplicate atom serial number found: 99891
Duplicate atom serial number found: 99892
Duplicate atom serial number found: 99893
Duplicate atom serial number found: 99894
5 messages similar to the above omitted
Ignored bad PDB record found on line 628891
ATOM 9989a H2 TIP3W9005 -16.658 -30.813 101.364 0.00 0.00 WT1C
Ignored bad PDB record found on line 628892
ATOM 9989b OH2 TIP3W9006 49.679 -51.328 49.820 0.00 0.00 WT1C
Ignored bad PDB record found on line 628893
ATOM 9989c H1 TIP3W9006 48.978 -51.300 50.471 0.00 0.00 WT1C
Ignored bad PDB record found on line 628894
ATOM 9989d H2 TIP3W9006 49.980 -52.237 49.831 0.00 0.00 WT1C
Ignored bad PDB record found on line 628895
ATOM 9989e OH2 TIP3W9007 25.385 -55.835 121.040 0.00 0.00 WT1C
97 messages similar to the above omitted
Duplicate atom serial number found: 99900
Duplicate atom serial number found: 99901
Duplicate atom serial number found: 99902
Duplicate atom serial number found: 99903
Duplicate atom serial number found: 99904
5 messages similar to the above omitted
Ignored bad PDB record found on line 629003
ATOM 9990a OH2 TIP3W9043 67.624 203.443 27.837 0.00 0.00 WT1C
Ignored bad PDB record found on line 629004
ATOM 9990b H1 TIP3W9043 68.410 203.847 27.470 0.00 0.00 WT1C
Ignored bad PDB record found on line 629005
ATOM 9990c H2 TIP3W9043 67.429 202.716 27.245 0.00 0.00 WT1C
Ignored bad PDB record found on line 629006
ATOM 9990d OH2 TIP3W9044 51.167 -18.790 117.549 0.00 0.00 WT1C
Ignored bad PDB record found on line 629007
ATOM 9990e H1 TIP3W9044 51.700 -18.001 117.643 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99910
Duplicate atom serial number found: 99911
Duplicate atom serial number found: 99912
Duplicate atom serial number found: 99913
Duplicate atom serial number found: 99914
5 messages similar to the above omitted
Ignored bad PDB record found on line 629019
ATOM 9991a H1 TIP3W9048 78.495 -60.680 66.613 0.00 0.00 WT1C
Ignored bad PDB record found on line 629020
ATOM 9991b H2 TIP3W9048 78.122 -59.354 67.241 0.00 0.00 WT1C
Ignored bad PDB record found on line 629021
ATOM 9991c OH2 TIP3W9050 34.514 201.199 -99.203 0.00 0.00 WT1C
Ignored bad PDB record found on line 629022
ATOM 9991d H1 TIP3W9050 33.997 201.216-100.008 0.00 0.00 WT1C
Ignored bad PDB record found on line 629023
ATOM 9991e H2 TIP3W9050 35.054 201.988 -99.249 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99920
Duplicate atom serial number found: 99921
Duplicate atom serial number found: 99922
Duplicate atom serial number found: 99923
Duplicate atom serial number found: 99924
5 messages similar to the above omitted
Ignored bad PDB record found on line 629035
ATOM 9992a H2 TIP3W9054 66.267 -22.628 33.310 0.00 0.00 WT1C
Ignored bad PDB record found on line 629036
ATOM 9992b OH2 TIP3W9055 9.462 -63.764 -3.384 0.00 0.00 WT1C
Ignored bad PDB record found on line 629037
ATOM 9992c H1 TIP3W9055 8.688 -63.241 -3.591 0.00 0.00 WT1C
Ignored bad PDB record found on line 629038
ATOM 9992d H2 TIP3W9055 9.696 -64.185 -4.212 0.00 0.00 WT1C
Ignored bad PDB record found on line 629039
ATOM 9992e OH2 TIP3W9056 61.643 -29.039 0.994 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99930
Duplicate atom serial number found: 99931
Duplicate atom serial number found: 99932
Duplicate atom serial number found: 99933
Duplicate atom serial number found: 99934
5 messages similar to the above omitted
Ignored bad PDB record found on line 629051
ATOM 9993a OH2 TIP3W9060 44.712 187.688 1.333 0.00 0.00 WT1C
Ignored bad PDB record found on line 629052
ATOM 9993b H1 TIP3W9060 44.472 187.408 2.216 0.00 0.00 WT1C
Ignored bad PDB record found on line 629053
ATOM 9993c H2 TIP3W9060 45.030 188.584 1.443 0.00 0.00 WT1C
Ignored bad PDB record found on line 629054
ATOM 9993d OH2 TIP3W9061 65.151 -38.670 80.592 0.00 0.00 WT1C
Ignored bad PDB record found on line 629055
ATOM 9993e H1 TIP3W9061 65.351 -37.743 80.457 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99940
Duplicate atom serial number found: 99941
Duplicate atom serial number found: 99942
Duplicate atom serial number found: 99943
Duplicate atom serial number found: 99944
5 messages similar to the above omitted
Ignored bad PDB record found on line 629067
ATOM 9994a H1 TIP3W9065 25.223 -52.757 116.660 0.00 0.00 WT1C
Ignored bad PDB record found on line 629068
ATOM 9994b H2 TIP3W9065 26.165 -52.529 115.497 0.00 0.00 WT1C
Ignored bad PDB record found on line 629069
ATOM 9994c OH2 TIP3W9066 12.938 -41.753 39.212 0.00 0.00 WT1C
Ignored bad PDB record found on line 629070
ATOM 9994d H1 TIP3W9066 12.874 -41.792 40.167 0.00 0.00 WT1C
Ignored bad PDB record found on line 629071
ATOM 9994e H2 TIP3W9066 12.936 -40.818 39.009 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99950
Duplicate atom serial number found: 99951
Duplicate atom serial number found: 99952
Duplicate atom serial number found: 99953
Duplicate atom serial number found: 99954
5 messages similar to the above omitted
Ignored bad PDB record found on line 629083
ATOM 9995a H2 TIP3W9070 18.910 206.151 83.214 0.00 0.00 WT1C
Ignored bad PDB record found on line 629084
ATOM 9995b OH2 TIP3W9071 7.243 200.888 96.087 0.00 0.00 WT1C
Ignored bad PDB record found on line 629085
ATOM 9995c H1 TIP3W9071 7.200 199.937 95.996 0.00 0.00 WT1C
Ignored bad PDB record found on line 629086
ATOM 9995d H2 TIP3W9071 7.221 201.217 95.189 0.00 0.00 WT1C
Ignored bad PDB record found on line 629087
ATOM 9995e OH2 TIP3W9072 80.409 24.558 42.277 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99960
Duplicate atom serial number found: 99961
Duplicate atom serial number found: 99962
Duplicate atom serial number found: 99963
Duplicate atom serial number found: 99964
5 messages similar to the above omitted
Ignored bad PDB record found on line 629099
ATOM 9996a OH2 TIP3W9078 39.790 -40.510 29.229 0.00 0.00 WT1C
Ignored bad PDB record found on line 629100
ATOM 9996b H1 TIP3W9078 40.493 -39.877 29.083 0.00 0.00 WT1C
Ignored bad PDB record found on line 629101
ATOM 9996c H2 TIP3W9078 39.536 -40.380 30.142 0.00 0.00 WT1C
Ignored bad PDB record found on line 629102
ATOM 9996d OH2 TIP3W9079 26.654 -55.963 15.492 0.00 0.00 WT1C
Ignored bad PDB record found on line 629103
ATOM 9996e H1 TIP3W9079 27.217 -55.247 15.787 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99970
Duplicate atom serial number found: 99971
Duplicate atom serial number found: 99972
Duplicate atom serial number found: 99973
Duplicate atom serial number found: 99974
5 messages similar to the above omitted
Ignored bad PDB record found on line 629115
ATOM 9997a H1 TIP3W9084 61.717 -34.637 51.044 0.00 0.00 WT1C
Ignored bad PDB record found on line 629116
ATOM 9997b H2 TIP3W9084 61.442 -33.679 52.183 0.00 0.00 WT1C
Ignored bad PDB record found on line 629117
ATOM 9997c OH2 TIP3W9085 29.042 -18.650 58.652 0.00 0.00 WT1C
Ignored bad PDB record found on line 629118
ATOM 9997d H1 TIP3W9085 29.044 -19.563 58.364 0.00 0.00 WT1C
Ignored bad PDB record found on line 629119
ATOM 9997e H2 TIP3W9085 29.242 -18.149 57.861 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99980
Duplicate atom serial number found: 99981
Duplicate atom serial number found: 99982
Duplicate atom serial number found: 99983
Duplicate atom serial number found: 99984
5 messages similar to the above omitted
Ignored bad PDB record found on line 629131
ATOM 9998a H2 TIP3W9089 100.328 -36.237 117.222 0.00 0.00 WT1C
Ignored bad PDB record found on line 629132
ATOM 9998b OH2 TIP3W9090 94.300 -64.579 94.847 0.00 0.00 WT1C
Ignored bad PDB record found on line 629133
ATOM 9998c H1 TIP3W9090 94.728 -63.731 94.733 0.00 0.00 WT1C
Ignored bad PDB record found on line 629134
ATOM 9998d H2 TIP3W9090 93.504 -64.519 94.318 0.00 0.00 WT1C
Ignored bad PDB record found on line 629135
ATOM 9998e OH2 TIP3W9092 26.032 -10.885 39.794 0.00 0.00 WT1C
1 messages similar to the above omitted
Duplicate atom serial number found: 99990
Duplicate atom serial number found: 99991
Duplicate atom serial number found: 99992
Duplicate atom serial number found: 99993
Duplicate atom serial number found: 99994
5 messages similar to the above omitted
Ignored bad PDB record found on line 629147
ATOM 9999a OH2 TIP3W9097 -26.592 -33.405 61.274 0.00 0.00 WT1C
Ignored bad PDB record found on line 629148
ATOM 9999b H1 TIP3W9097 -26.385 -34.329 61.133 0.00 0.00 WT1C
Ignored bad PDB record found on line 629149
ATOM 9999c H2 TIP3W9097 -27.515 -33.403 61.528 0.00 0.00 WT1C
Ignored bad PDB record found on line 629150
ATOM 9999d OH2 TIP3W9098 16.641 183.889 -19.620 0.00 0.00 WT1C
Ignored bad PDB record found on line 629151
ATOM 9999e H1 TIP3W9098 16.465 184.757 -19.982 0.00 0.00 WT1C
419425 messages similar to the above omitted
Chain information for actomyo_2_myos_5actins_step5.pdb #2
---
Chain | Description
A B C D E | No description available
F | No description available
L Q | No description available
M N O R S T | No description available
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
See log for complete Python traceback.
> close #2
Deleting atomic symmetry model...
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
See log for complete Python traceback.
> open
> /Users/henryshuman/Documents/NAMD/myo1c_into_P19_J544/actomyo_2_myos_5actins_end_of_step5.pdb
Chain information for actomyo_2_myos_5actins_end_of_step5.pdb #2
---
Chain | Description
A B C D E | No description available
F | No description available
L Q | No description available
M N O R S T | No description available
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
See log for complete Python traceback.
> ui tool show ISOLDE
> set selectionWidth 4
Deleting atomic symmetry model...
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
See log for complete Python traceback.
Chain information for actomyo_2_myos_5actins_end_of_step5.pdb
---
Chain | Description
2.2/A 2.2/B 2.2/C 2.2/D 2.2/E | No description available
2.2/F | No description available
2.2/L 2.2/Q | No description available
2.2/M 2.2/N 2.2/O 2.2/R 2.2/S 2.2/T | No description available
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type WinAutoResizeQComboBox has been
deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1013, in _update_model_list
mmcb.blockSignals(True)
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Done loading forcefield
> ui tool show ISOLDE
> isolde pepflip
Missing or invalid "atoms" argument: empty atom specifier
> isolde pepflip @271
Flipping the peptide bond for 0 residues
No atoms selected!
> isolde pepflip E271
Missing or invalid "atoms" argument: invalid atoms specifier
> select clear
> isolde pepflip /E 271
Expected fewer arguments
> isolde pepflip /E271
Flipping the peptide bond for 0 residues
No atoms selected!
> isolde pepflip E271
Missing or invalid "atoms" argument: invalid atoms specifier
> select up
11 atoms, 10 bonds, 1 residue, 1 model selected
> select clear
> select up
10 atoms, 9 bonds, 1 residue, 1 model selected
> isolde pepflip E271
Missing or invalid "atoms" argument: invalid atoms specifier
> isolde pepflip :E271
Flipping the peptide bond for 0 residues
No atoms selected!
> isolde pepflip /E:271
Flipping the peptide bond for 1 residues
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 1044, in _update_model_list
self._change_selected_model(model=current_model)
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2478, in _change_selected_model
self._update_iffy_rota_list()
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "/Users/henryshuman/Library/Application Support/ChimeraX/1.2/site-
packages/chimerax/isolde/isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Loading residue template for ADP from internal database
Populating font family aliases took 1753 ms. Replace uses of missing font
family "Carlito" with one that exists to avoid this cost.
ISOLDE: started sim
OpenGL version: 4.1 INTEL-12.10.12
OpenGL renderer: Intel HD Graphics 5000 OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac14,4
Processor Name: Intel Core i5
Processor Speed: 1.4 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 199.0.0.0.0
SMC Version (system): 2.21f92
Software:
System Software Overview:
System Version: macOS 10.14.6 (18G103)
Kernel Version: Darwin 18.7.0
Time since boot: 5 days 4:05
Graphics/Displays:
Intel HD Graphics 5000:
Chipset Model: Intel HD Graphics 5000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0a26
Revision ID: 0x0009
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
iMac:
Display Type: LCD
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DisplayPort
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-Clipper: 0.16.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.2.2
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Flip peptide bond: wrapped C/C++ object of type QTableWidget has been deleted |
comment:2 by , 3 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Totally rebuilt GUI as of 1.4, taking care of this bug amongst others.
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Reported by Henry Shuman