![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jan 24, 2022:
- 11:28 PM Ticket #6016 (Blast protein error: 'DefaultApi' object has no attribute 'job_id') closed by
- fixed
- 6:23 PM Ticket #5984 (Check for newer versions: 'DefaultApi' object has no attribute ...) closed by
- fixed: DefaultAPI error is no longer in toolshed but in BlastProtein.
- 6:13 PM Ticket #6016 (Blast protein error: 'DefaultApi' object has no attribute 'job_id') created by
- […]
- 5:58 PM Ticket #6011 (Map fitting does not log command) closed by
- fixed: Fixed. Made Fit in Map panel log the equivalent fitmap command. …
- 5:50 PM Ticket #6015 (Old bundle installed) created by
- […]
- 5:49 PM Ticket #5893 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- duplicate: Fixed by …
- 5:44 PM Ticket #5999 (Internal Server Error fetching Toolshed information) closed by
- fixed: Monkeypatch of backend caused unrecoverable error; this has been fixed …
- 5:43 PM Ticket #6000 (Internal Server Error fetching Toolshed information) closed by
- duplicate: Duplicates #5999.
- 5:41 PM Ticket #5995 (Error parsing Blast results) closed by
- fixed: Root cause was the same as #5998; apache could not write into the …
- 5:40 PM Ticket #5998 (Alphafold search broken: 500 Internal Server Error) closed by
- fixed: apache could not write into the directory it was set to use to store …
- 5:08 PM Ticket #6001 (Problems specifying AlphaFold arguments) closed by
- fixed: Fixed the other problem you asked about "." gap characters when using …
- 4:48 PM Ticket #6014 (Selection outline not rendered) created by
- […]
- 4:01 PM Ticket #4899 (RFE: if "typed only" pref is off, command history should list ...) closed by
- fixed: Okay, cxc file commands appear in history if "typed only" is false. …
- 3:22 PM Ticket #6013 (Crash in event loop) created by
- […]
- 2:41 PM ChangeLog edited by
- (diff)
- 12:29 PM Ticket #6010 (Crash in numpy saving image) closed by
- can't reproduce: Thread 0x00004fb0 (most recent call first): File "C:\Program …
- 12:23 PM Ticket #6012 (Crash in rapid_access_shown at startup on Linux) created by
- […]
- 12:22 PM Ticket #6008 (Problem opening DICOM data: object of type 'NoneType' has no len()) closed by
- fixed: Fixed. Code will now sort by TemporalPositionIdentifier instead of …
- 11:40 AM Ticket #6007 (Crash showing status after opening session) closed by
- nonchimerax: Crashed with "access violation" making opengl context in …
- 11:33 AM Ticket #6005 (Crash creating ribbon graphics, possibly during simulation) closed by
- can't reproduce: Duplicate of #6004. Appears to be graphics driver crash.
- 11:31 AM Ticket #6004 (Crash in graphics driver deleting ribbon graphics, possibly during ...) closed by
- nonchimerax: Crash in graphics driver while removing a ribbon in this ChimeraX …
- 11:26 AM Ticket #6002 (Graphics drive crash, macOS 10.15.5, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple graphics driver crash. ChimeraX was using 25 GB of memory.
- 11:18 AM Ticket #6009 (Problem opening DICOM data: object of type 'NoneType' has no len()) closed by
- duplicate
- 11:11 AM Ticket #6006 (Crash in event loop (bad memory access)) closed by
- can't reproduce
- 10:50 AM Ticket #6011 (Map fitting does not log command) created by
- […]
- 10:39 AM Ticket #6003 (Qt crash during exit) closed by
- duplicate
- 2:26 AM Ticket #6010 (Crash in numpy saving image) created by
- […]
Jan 23, 2022:
- 2:56 PM Ticket #6009 (Problem opening DICOM data: object of type 'NoneType' has no len()) created by
- […]
- 2:55 PM Ticket #6008 (Problem opening DICOM data: object of type 'NoneType' has no len()) created by
- […]
- 7:31 AM Ticket #6007 (Crash showing status after opening session) created by
- […]
- 1:07 AM Ticket #6006 (Crash in event loop (bad memory access)) created by
- […]
Jan 22, 2022:
- 6:45 PM Ticket #6005 (Crash creating ribbon graphics, possibly during simulation) created by
- […]
- 6:30 PM Ticket #6004 (Crash in graphics driver deleting ribbon graphics, possibly during ...) created by
- […]
- 2:16 PM Ticket #6003 (Qt crash during exit) created by
- […]
- 12:59 PM Ticket #6002 (Graphics drive crash, macOS 10.15.5, Intel Iris Plus Graphics 640) created by
- […]
- 9:51 AM Ticket #6001 (Problems specifying AlphaFold arguments) created by
- […]
- 7:06 AM Ticket #6000 (Internal Server Error fetching Toolshed information) created by
- […]
- 5:27 AM Ticket #5999 (Internal Server Error fetching Toolshed information) created by
- […]
Jan 21, 2022:
- 4:18 PM Ticket #5989 (Error saving supersampled image after showing Side View) closed by
- can't reproduce: Bug report says user had just the retina display of this Mac laptop. …
- 4:11 PM Ticket #5990 (Qt crash during exit) closed by
- duplicate: ChimeraX crashed when it was quitting. This is a bug in the PyQt …
- 4:08 PM Ticket #5994 (Crash during AlphaFold prediction) closed by
- duplicate: Thread 0x000023fc (most recent call first): File "C:\Program …
- 4:01 PM Ticket #5997 (Crazy silhouettes) closed by
- nonchimerax: This is probably a bug in your graphics driver. Your specific Mac …
- 3:49 PM Ticket #5993 (Crash updating clip caps) closed by
- can't reproduce: Made new ticket for earlier alphafold search error #5998
- 3:40 PM Ticket #5998 (Alphafold search broken: 500 Internal Server Error) created by
- […]
- 3:34 PM Ticket #5996 (Crash getting ring information) closed by
- duplicate: Hi Yen-Li, Unfortunately, the only way to avoid this crash for …
- 3:28 PM Ticket #5992 (Crash creating opengl context while loading toolshed info) closed by
- can't reproduce: There are two threads in this crash report and the "current" thread is …
- 3:08 PM Ticket #5997 (Crazy silhouettes) created by
- […] Ku_1JEY.tif
- 2:51 PM Ticket #5996 (Crash getting ring information) created by
- […]
- 2:46 PM Ticket #5995 (Error parsing Blast results) created by
- […]
- 2:32 PM Ticket #5987 (AlphaFold prediction with Qt 6: 'QWebEngineDownloadRequest' object has ...) closed by
- fixed: Fixed. Made separate qt 5 and qt 6 download code for alphafold predict.
- 1:26 PM Ticket #5994 (Crash during AlphaFold prediction) created by
- […]
- 12:15 PM Ticket #5993 (Crash updating clip caps) created by
- […]
- 9:18 AM Ticket #5992 (Crash creating opengl context while loading toolshed info) created by
- […]
- 9:16 AM Ticket #5988 (Crash showing main window) closed by
- can't reproduce
- 9:07 AM Ticket #5983 (various errors) closed by
- duplicate: Seems like all these errors are moot in 1.3
- 9:04 AM Ticket #5982 (Crash reading mmCIF file) closed by
- can't reproduce
- 9:02 AM Ticket #5991 (cross-eyed stereo) created by
- from Peter Speilmann registration comment: "cross-eyed stero would be …
- 8:10 AM Ticket #5990 (Qt crash during exit) created by
- […]
- 6:57 AM Ticket #5989 (Error saving supersampled image after showing Side View) created by
- […]
- 5:12 AM Ticket #5988 (Crash showing main window) created by
- […]
Jan 20, 2022:
- 10:58 PM Ticket #5986 (Bug reporter broken: error in new locale.getdefaultlocale() code) closed by
- fixed: Fixed. See https://bugs.python.org/issue18378 for a discussion of …
- 10:32 PM Ticket #5987 (AlphaFold prediction with Qt 6: 'QWebEngineDownloadRequest' object has ...) created by
- Could not report this with bug reporter since it is broken. Bug on …
- 10:24 PM Ticket #5986 (Bug reporter broken: error in new locale.getdefaultlocale() code) created by
- Bug reporter has been broken on Mac for the last 16 days in daily …
- 10:23 PM Ticket #5985 (Download page Ubuntu install command is wrong) created by
- The ChimeraX daily build Ubuntu 20.04 install command listed on the …
- 10:14 PM Ticket #5984 (Check for newer versions: 'DefaultApi' object has no attribute ...) created by
- […]
- 6:09 PM Dev2022-1-27 created by
- 6:07 PM 2022-1-27 created by
- 6:06 PM DeveloperMeetings edited by
- (diff)
- 6:05 PM 2022-1-20 edited by
- (diff)
- 5:53 PM Ticket #5972 (Crash setting window size during session restore) closed by
- can't reproduce: ChimeraX set the window size when opening a session and was then …
- 5:48 PM Ticket #5983 (various errors) created by
- […]
- 5:38 PM Ticket #5978 (Crash in _mouse_buttons_down) closed by
- can't reproduce: […] Line 519 in mousemodes.py […] Opened a session with some …
- 3:10 PM Ticket #5982 (Crash reading mmCIF file) created by
- […]
- 2:43 PM Ticket #5966 (Crash destroying open dialog) closed by
- can't reproduce: Hi James, Thanks for getting back to me. Unfortunately, that's still …
- 2:23 PM Ticket #5977 (ISOLDE: KeyError in find_glycan_template_name_and_link) closed by
- fixed: Long-since fixed. Upshot is that the user has an …
- 2:21 PM NTTData edited by
- (diff)
- 2:17 PM Ticket #5976 (REST error contacting Toolshed) closed by
- fixed: Hi Bharath, Thanks for reporting this problem. It was an issue with …
- 2:11 PM Ticket #5970 (REST error contacting Toolshed) closed by
- duplicate
- 2:08 PM Ticket #5981 (Crash after X11 connection broke) created by
- […]
- 2:02 PM NTTData edited by
- (diff)
- 2:02 PM NTTData edited by
- (diff)
- 1:57 PM NTTData edited by
- (diff)
- 1:54 PM Ticket #5973 (Check for new version: name '_getuser' is not defined) closed by
- fixed: Fixed in the current daily build.
- 1:36 PM NTTData edited by
- (diff)
- 1:03 PM Ticket #5975 (REST error contacting Toolshed) closed by
- duplicate
- 12:46 PM Ticket #5971 (REST error contacting Toolshed) closed by
- duplicate
- 12:31 PM Ticket #5950 (Problem installing Chimera 1.3 on Ubuntu 18.04) closed by
- can't reproduce: Sorry, I just tried this on Ubuntu 18.04, and it installed without any …
- 12:21 PM Ticket #5980 (Unknown crash) created by
- […]
- 12:20 PM Ticket #5979 (ChimeraX bug report submission) closed by
- fixed: Should now correctly fail with {{{{"title": "Missing parameter", …
- 12:17 PM 2022-1-20 edited by
- (diff)
- 12:02 PM 2022-1-20 edited by
- (diff)
- 11:59 AM Ticket #5979 (ChimeraX bug report submission) created by
- […]
- 11:58 AM 2022-1-20 edited by
- (diff)
- 11:54 AM 2022-1-20 edited by
- (diff)
- 11:28 AM 2022-1-20 edited by
- (diff)
- 11:25 AM 2022-1-20 edited by
- (diff)
- 11:22 AM 2022-1-20 edited by
- (diff)
- 11:18 AM 2022-1-20 edited by
- (diff)
- 10:35 AM Ticket #5978 (Crash in _mouse_buttons_down) created by
- […]
- 9:23 AM Ticket #5977 (ISOLDE: KeyError in find_glycan_template_name_and_link) created by
- […]
- 9:21 AM Ticket #5976 (REST error contacting Toolshed) created by
- […]
- 9:11 AM Ticket #5975 (REST error contacting Toolshed) created by
- […]
- 8:53 AM Ticket #5974 (REST error contacting Toolshed) created by
- […]
- 5:21 AM Ticket #5973 (Check for new version: name '_getuser' is not defined) created by
- […]
- 4:15 AM Ticket #5972 (Crash setting window size during session restore) created by
- […]
- 3:44 AM Ticket #5971 (REST error contacting Toolshed) created by
- […]
- 1:43 AM Ticket #5970 (REST error contacting Toolshed) created by
- […]
Jan 19, 2022:
- 11:15 PM Ticket #5969 (Crash in event loop) created by
- […]
- 6:48 PM Ticket #5968 (Edwin Rojas-Unable to access toolbox to download) closed by
- fixed: Hi Edwin, I'm not really sure how to do *just* minimization in ISOLDE …
- 5:59 PM Ticket #5968 (Edwin Rojas-Unable to access toolbox to download) created by
- […] Capture.PNG
- 5:44 PM Ticket #5965 (Crash in event loop after swapaa) closed by
- can't reproduce
- 5:40 PM Ticket #5963 (Toolshed down) closed by
- fixed: The Toolshed is back up now.
- 3:33 PM Ticket #5967 (add independent-rotation option to turn, roll commands) created by
- now that we have a "rotate independent" mouse mode, would be nice to …
- 3:22 PM ChangeLog edited by
- (diff)
- 2:12 PM Ticket #5966 (Crash destroying open dialog) created by
- […]
- 2:07 PM Ticket #5925 (Swapaa: name 'critera' is not defined) closed by
- fixed: 'criteria' was misspelled
- 12:01 PM Ticket #5965 (Crash in event loop after swapaa) created by
- […]
- 11:42 AM Ticket #5962 (Graphics driver crash, macOS 11.5.2, Intel Iris Pro) closed by
- nonchimerax: Apple graphics driver crash. Many Gbyte size maps open, ChimeraX …
- 11:31 AM Ticket #5955 (Crash removing dock widget from main window during AlphaFold prediction) closed by
- can't reproduce: I put in some code to better protect against tool window dock widgets …
- 11:10 AM Ticket #5964 (Optimizing ISOLDE map zoning using JAX) created by
- […]
- 10:32 AM Ticket #5960 (Qt crash during exit) closed by
- duplicate
- 10:31 AM Ticket #5959 (Restoring session: invalid load key) closed by
- duplicate
- 10:22 AM Ticket #5958 (Crash checking if change-tracker changed after 'save' command) closed by
- can't reproduce: My thinking now is that it's ctypes temporarily being unable to access …
- 9:12 AM Ticket #5956 (Crash getting ring information for nucleotides) closed by
- fixed: Hi Yen-Li, Thanks for reporting this problem. We have recently put …
- 9:01 AM Ticket #5953 (Crash after H-bonds shown) closed by
- can't reproduce: Wasn't the first time the hbonds command was used in the session.
- 8:41 AM Ticket #5963 (Toolshed down) created by
- […]
- 8:25 AM Ticket #5962 (Graphics driver crash, macOS 11.5.2, Intel Iris Pro) created by
- […]
- 3:48 AM Ticket #5961 (Crash in OpenMM getState) created by
- […]
- 3:40 AM Ticket #5960 (Qt crash during exit) created by
- […]
- 2:47 AM Ticket #5959 (Restoring session: invalid load key) created by
- […]
- 2:07 AM Ticket #5958 (Crash checking if change-tracker changed after 'save' command) created by
- […]
- 12:52 AM Ticket #5957 (Ramachandran plot accessing deleted widgets) created by
- […]
Jan 18, 2022:
- 11:45 PM Ticket #5932 (Add independent center of rotation mouse mode) closed by
- fixed: I added an independent rotation mouse mode that is enabled by the tile …
- 11:42 PM Ticket #2495 (RFE: set independent) closed by
- fixed: Fixed. I made the tile command switch to a new independent rotation …
- 9:22 PM Ticket #5956 (Crash getting ring information for nucleotides) created by
- […]
- 7:52 PM Ticket #5955 (Crash removing dock widget from main window during AlphaFold prediction) created by
- […]
- 7:27 PM Ticket #5954 (Add Phenix douse tool to add waters) created by
- As part of the Phenix R24 grant we will be allowing ChimeraX to call …
- 6:41 PM Ticket #5953 (Crash after H-bonds shown) created by
- […]
- 6:41 PM Ticket #5952 (Render By Attribute tool) created by
- Implement equivalent to Chimera's Render By Attribute tool.
- 5:41 PM Ticket #5951 (Put Qt fatal message output into bug reports) created by
- We see many crashes on Windows in the Qt event loop. Maybe we would …
- 5:27 PM Ticket #5944 (Crash updating clip caps) closed by
- can't reproduce: Hid and showed model in a multimodel PDB file. […] Was checking or …
- 5:19 PM Ticket #5943 (Crash after/during AlphaFold predict) closed by
- can't reproduce: The AlphaFold prediction had not finished -- it logs a message when it …
- 4:53 PM Ticket #5941 (Crash checking if clip planes changed after 'select' command) closed by
- can't reproduce: Maybe it is a graphics driver crash. On Windows the Python …
- 4:44 PM Ticket #5949 (Cannot open new session) closed by
- not a bug: Hi Chitra, For the most part you cannot open a session made by a …
- 4:41 PM ChangeLog edited by
- (diff)
- 4:31 PM Ticket #5938 (Graphics driver crash, macOS 10.15.7, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple graphics driver crash. Graphics window had just been resized.
- 4:30 PM Ticket #5950 (Problem installing Chimera 1.3 on Ubuntu 18.04) created by
- […]
- 4:15 PM Ticket #5945 (Crash parsing atom spec) closed by
- duplicate
- 2:25 PM Ticket #5949 (Cannot open new session) created by
- […]
- 1:54 PM Ticket #5936 (Crash after volume level command) closed by
- can't reproduce: Crash appears to be in Qt event loop. But actually there are about 15 …
- 1:49 PM Ticket #5942 (Crash checking change tracking after closing models) closed by
- can't reproduce
- 12:12 PM Ticket #5939 ("Fake" attribute state manager lacks some methods) closed by
- duplicate
- 11:59 AM Ticket #5934 (Crash updating volume drawings after models close) closed by
- can't reproduce: Thread 0x00002f34 (most recent call first): File "C:\Program …
- 11:42 AM Ticket #5931 (Graphics driver crash, macOS 11.6.1, Intel UHD Graphics 630) closed by
- duplicate: Duplicate of #5930. MacBook Pro using ultrawide external display, …
- 11:39 AM Ticket #5930 (Graphics driver crash, macOS 11.6.1, Intel UHD Graphics 630) closed by
- nonchimerax: Apple graphics driver crash.
- 11:32 AM Ticket #5948 (Make zoom command move clip planes) closed by
- fixed: Fixed. Made zoom command move near/far clip planes if they are enabled.
- 11:30 AM Ticket #5948 (Make zoom command move clip planes) created by
- From: Elaine Meng Subject: view/zoom bug? Date: January 16, 2022 at …
- 11:11 AM Ticket #5937 (Crash in garbage collection during new-object allocation) closed by
- duplicate
- 11:08 AM Ticket #5935 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 11:02 AM Ticket #5933 (Check for new version: name '_getuser' is not defined) closed by
- duplicate
- 10:17 AM 2022-1-20 created by
- 10:15 AM DeveloperMeetings edited by
- (diff)
- 9:20 AM Ticket #5947 (Crash in GL.glUniform1f) created by
- […]
- 9:06 AM Ticket #5946 (Crash after opening session containing volumes) created by
- […]
- 8:03 AM Ticket #5945 (Crash parsing atom spec) created by
- […]
- 6:02 AM Ticket #5944 (Crash updating clip caps) created by
- […]
- 4:38 AM Ticket #5943 (Crash after/during AlphaFold predict) created by
- […]
- 2:55 AM Ticket #5942 (Crash checking change tracking after closing models) created by
- […]
Jan 17, 2022:
- 10:40 PM Ticket #5743 (Quick Start Guide: Linux Python missing bz2 module) closed by
- fixed: This is fixed in the post 1.3 daily build. Our CentOS build …
- 7:56 PM Ticket #5941 (Crash checking if clip planes changed after 'select' command) created by
- […]
- 7:44 PM Ticket #5940 (SMILES server-connection failure) created by
- […]
- 2:21 PM Ticket #5939 ("Fake" attribute state manager lacks some methods) created by
- […]
- 12:55 PM Ticket #5938 (Graphics driver crash, macOS 10.15.7, Intel Iris Graphics 6100) created by
- […]
- 11:08 AM Ticket #5937 (Crash in garbage collection during new-object allocation) created by
- […]
- 8:33 AM Ticket #5936 (Crash after volume level command) created by
- […]
- 2:38 AM Ticket #5935 (Crash showing Rapid Access at startup) created by
- […]
- 2:17 AM Ticket #5934 (Crash updating volume drawings after models close) created by
- […]
Jan 15, 2022:
Jan 14, 2022:
- 6:25 PM Ticket #5932 (Add independent center of rotation mouse mode) created by
- […]
- 5:20 PM Ticket #5931 (Graphics driver crash, macOS 11.6.1, Intel UHD Graphics 630) created by
- […]
- 5:08 PM Ticket #5930 (Graphics driver crash, macOS 11.6.1, Intel UHD Graphics 630) created by
- […]
- 4:38 PM Ticket #5929 (Crash in event loop) created by
- […]
- 3:54 PM Ticket #5928 ("name 'stream' is not defined" opening model positions file) closed by
- fixed: There is a mistake in the ChimeraX code that is trying to print an …
- 3:34 PM Ticket #5926 (ChimeraX 1.3 won't start (Windows 10)) closed by
- nonchimerax: The most common reason ChimeraX fails to start is your system graphics …
- 3:29 PM Ticket #5928 ("name 'stream' is not defined" opening model positions file) created by
- […]
- 2:46 PM Ticket #5927 (Attempt to use either positions or matrix file) closed by
- not a bug: I don't understand what you are trying to do. If you are trying to …
- 1:10 PM Ticket #5924 (Crash in event loop) closed by
- can't reproduce
- 1:09 PM Ticket #5923 (Crash in Clashes GUI generating command) closed by
- can't reproduce
- 1:06 PM Ticket #5922 (Crash fetching Ring's "aromatic" property) closed by
- duplicate: Hi Yen-Li, Thanks for reporting this problem. It was fixed about 3 …
- 10:06 AM Ticket #5927 (Attempt to use either positions or matrix file) created by
- […] model.cmx
- 9:04 AM Ticket #5926 (ChimeraX 1.3 won't start (Windows 10)) created by
- […]
- 8:16 AM Ticket #5925 (Swapaa: name 'critera' is not defined) created by
- […]
- 8:07 AM Ticket #5924 (Crash in event loop) created by
- […]
- 3:40 AM Ticket #5923 (Crash in Clashes GUI generating command) created by
- […]
- 1:38 AM Ticket #5918 (ISOLDE: implicit solvent applied twice if CUDA fails and falls back to ...) closed by
- fixed: SBGRID are fixing the CUDA library error, and the bug in ISOLDE's …
Jan 13, 2022:
- 11:41 PM Ticket #5922 (Crash fetching Ring's "aromatic" property) created by
- […]
- 5:32 PM Ticket #4902 ("key" command does not show color key if Color Key graphical interface ...) closed by
- fixed
- 5:22 PM 2022-1-13 edited by
- (diff)
- 5:18 PM 2022-1-13 edited by
- (diff)
- 5:04 PM Dev2022-1-13 edited by
- (diff)
- 4:47 PM Ticket #5911 (Problem with realsense command: Couldn't resolve requests) closed by
- can't reproduce: Glad someone is trying the realsense depth camera with VR. But they …
- 4:35 PM Ticket #5913 (Crash in ctypes crash after session opened) closed by
- can't reproduce: All the user did was open a session file […] which appears to …
- 3:58 PM Ticket #5919 (Problem reading cube file: could not convert string to float) closed by
- can't reproduce: All I can guess is the user overwrote the file so it was no longer in …
- 3:57 PM Ticket #5921 (Crash after running MatchMaker) closed by
- can't reproduce
- 12:33 PM Ticket #5916 (Crash after running MatchMaker) closed by
- can't reproduce
- 12:18 PM Ticket #5921 (Crash after running MatchMaker) created by
- […]
- 11:11 AM 2022-1-13 edited by
- (diff)
- 11:09 AM 2022-1-13 edited by
- (diff)
- 10:55 AM Ticket #5915 (Swapaa failure setting stick size) closed by
- duplicate: Hi Yen-Li, Thanks for reporting this problem. It was fixed 3 days …
- 10:52 AM Ticket #5914 (Fatal Qt error during app initialization) closed by
- can't reproduce
- 9:57 AM Ticket #5920 (Restoring session with volume not found leads to errors) created by
- If when restoring a session a volume is not found and the user does …
- 9:53 AM Ticket #5910 (Multiple volume/session failures followed by out of memory opening ...) closed by
- nonchimerax: The error says "MemoryError: not enough memory" after opening a …
- 9:46 AM Ticket #5907 (Better starting directory when ChimeraX launched by file association) reopened by
- Should test if same behavior in Windows 11.
- 9:45 AM Ticket #5909 (Crash during/after AlphaFold prediction) closed by
- can't reproduce: Crash in Qt event loop. My best guess is that the Qt html panel for …
- 9:41 AM Ticket #5919 (Problem reading cube file: could not convert string to float) created by
- […]
- 6:55 AM Ticket #5918 (ISOLDE: implicit solvent applied twice if CUDA fails and falls back to ...) created by
- […]
- 3:35 AM Ticket #5916 (Crash after running MatchMaker) created by
- […]
- 3:31 AM Ticket #5890 (openmm.OpenMMException: Error launching CUDA compiler) closed by
- fixed: Great! To my knowledge the first instance of ISOLDE running under WSL2 …
- 2:21 AM Ticket #5915 (Swapaa failure setting stick size) created by
- […]
Jan 12, 2022:
- 11:11 PM Ticket #5914 (Fatal Qt error during app initialization) created by
- […]
- 10:09 PM Ticket #5913 (Crash in ctypes crash after session opened) created by
- […]
- 9:06 PM Ticket #5912 (Crash handling tool window closeEvent after AlphaFold prediction finishes) created by
- […]
- 9:03 PM Ticket #5911 (Problem with realsense command: Couldn't resolve requests) created by
- […]
- 6:59 PM Ticket #5910 (Multiple volume/session failures followed by out of memory opening ...) created by
- […]
- 6:20 PM NTTData edited by
- (diff)
- 6:20 PM NTTData edited by
- (diff)
- 5:46 PM Ticket #5442 (multiple columns of options) closed by
- fixed: Changed the suggested parts of the Clashes interface to use multiple …
- 2:45 PM Ticket #5907 (Better starting directory when ChimeraX launched by file association) closed by
- nonchimerax: After rebooting Windows 10 I observe the same behavior that double …
- 10:38 AM Ticket #5909 (Crash during/after AlphaFold prediction) created by
- […]
- 10:09 AM Ticket #5908 (Crash in event loop after hiding models) closed by
- can't reproduce
- 10:05 AM Ticket #5906 (Calling windowShouldClose: on the delegate for the QNSPanel) closed by
- can't reproduce
- 9:41 AM Ticket #5908 (Crash in event loop after hiding models) created by
- […]
- 4:47 AM Ticket #5907 (Better starting directory when ChimeraX launched by file association) created by
- […]
- 12:30 AM Ticket #5905 (Linux: No module named '_bz2') closed by
- fixed: Added bzip2 development libraries to the CentOS 7 and CentOS 8 images …
Jan 11, 2022:
- 8:55 PM Ticket #5906 (Calling windowShouldClose: on the delegate for the QNSPanel) created by
- […]
- 8:23 PM Ticket #5904 (Graphics driver crash, macOS 10.14.6, Intel Iris Pro) closed by
- nonchimerax: Apple graphics driver crash.
- 5:55 PM Ticket #5903 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 2:36 PM Ticket #5905 (Linux: No module named '_bz2') created by
- […]
- 1:38 PM Ticket #5904 (Graphics driver crash, macOS 10.14.6, Intel Iris Pro) created by
- […]
- 11:47 AM Ticket #5903 (Crash showing Rapid Access at startup) created by
- […]
- 11:27 AM Ticket #5183 (Features covers image on download page for some versions of Chrome) closed by
- can't reproduce: Newer versions of browsers don't seem to have this issue.
- 10:53 AM Ticket #5902 (OpenMM: RuntimeError: Release Object) closed by
- can't reproduce: Yeah... chances are this is already fixed, but if not will have to …
- 10:47 AM Ticket #5889 (openmm.OpenMMException: Error compiling kernel) closed by
- limitation: The error message itself doesn't give much to go on, but I think the …
- 10:18 AM Ticket #5902 (OpenMM: RuntimeError: Release Object) created by
- […]
- 9:58 AM 2022-1-13 created by
- 9:57 AM DeveloperMeetings edited by
- (diff)
- 9:56 AM DeveloperMeetings edited by
- (diff)
- 9:44 AM Ticket #5901 (Unknown crash with unformatted stack trace) closed by
- can't reproduce: Even more uninformative than usual.
- 9:36 AM Ticket #5898 (Crash opening mmCIF) closed by
- can't reproduce
- 9:31 AM Ticket #5901 (Unknown crash with unformatted stack trace) created by
- […]
- 7:14 AM Ticket #5900 (ISOLDE: add real-space map: structure is None) created by
- […]
- 7:13 AM Ticket #5899 (ISOLDE: swap equivalent atoms: Values array length 3 does not match ...) created by
- […]
- 5:30 AM Ticket #5898 (Crash opening mmCIF) created by
- […]
Jan 10, 2022:
- 4:52 PM Ticket #5897 (Add per-residue correlation calculation like Phenix) created by
- On Jan 10, 2022, at 3:48 PM, Yumeng Yan wrote: Hi Tom, ... Another …
- 4:38 PM Ticket #5896 (Add measure correlation command) closed by
- fixed: Added measure correlation command to measure the correlation between …
- 3:41 PM Ticket #5896 (Add measure correlation command) created by
- Yumeng Yan was using fitmap with shift false and rotate false options …
- 3:15 PM Ticket #5892 (Failure reading IMOD file) closed by
- fixed: Fixed in tonight's ChimeraX daily builds. ChimeraX was not correctly …
- 2:08 PM Ticket #5878 (Crash on redraw with Rapid Access still showing) closed by
- can't reproduce: Line 21 of changes.py is also a 'return' statement. This whole ticket …
- 10:57 AM Ticket #5894 (Linux: ImportError: libGLU.so.1: cannot open shared object file: No ...) closed by
- worksforme: User needs to install mesa libGLU package. On Ubuntu 20.04, that is …
- 10:55 AM Ticket #5895 (Add volume surface and mesh gui panel) created by
- On Jan 10, 2022, at 4:47 AM, Kelvin Lau via ChimeraX-users wrote: …
- 10:10 AM Ticket #5885 (Error checking for new version: NameError: name '_getuser' is not defined) closed by
- fixed: Fixed in the daily build.
- 9:34 AM Ticket #5886 (Crash in garbage collection during new-object allocation) closed by
- duplicate
- 9:30 AM Ticket #5884 (Crash in trigger handler after saving image) closed by
- can't reproduce
- 7:07 AM Ticket #5894 (Linux: ImportError: libGLU.so.1: cannot open shared object file: No ...) created by
- […]
- 6:26 AM Ticket #5893 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 4:18 AM Ticket #5892 (Failure reading IMOD file) created by
- […] test3.mod
- 2:29 AM Ticket #5891 (Crash in change-tracking after 'cd' command) created by
- […]
Jan 9, 2022:
Jan 8, 2022:
- 12:19 PM Ticket #5888 (Time out error checking for new ChimeraX version) closed by
- fixed: Ignore network/server errors when checking for new version.
- 12:17 PM Ticket #5889 (openmm.OpenMMException: Error compiling kernel) created by
- […]
Jan 7, 2022:
- 8:10 PM Ticket #5828 (Crash drawing frame) closed by
- can't reproduce: We have seen many crashes on Windows in draw_new_frame() which is …
- 7:55 PM Ticket #5881 (Save TIFF stack: ImageJ hyperstack shape and axes do not match) closed by
- fixed: Fixed. The call to tifffile.py imwrite() specified axis order …
- 7:44 PM Ticket #5888 (Time out error checking for new ChimeraX version) created by
- […]
- 11:53 AM Ticket #5887 (swapna) created by
- Implement swapna command.
- 7:28 AM Ticket #5886 (Crash in garbage collection during new-object allocation) created by
- […]
Jan 6, 2022:
- 11:36 PM Ticket #5885 (Error checking for new version: NameError: name '_getuser' is not defined) created by
- […]
- 10:38 PM Ticket #5884 (Crash in trigger handler after saving image) created by
- […]
- 8:49 PM Ticket #5883 (MemoryError saving map in session) closed by
- limitation: Out of memory error saving a session trying to convert to a byte …
- 8:21 PM Ticket #5880 (Crash after restoring session with Segger session restore error) closed by
- can't reproduce: ChimeraX crashed after opening a session when trying to draw Thread …
- 8:11 PM Ticket #5879 (Could not find virtual screen for QCocoaScreen) closed by
- duplicate: ChimeraX startup failure due to a Qt bug Could not find virtual …
- 8:05 PM Training edited by
- (diff)
- 8:01 PM 2022-1-6 edited by
- (diff)
- 8:00 PM 2022-1-6 edited by
- (diff)
- 7:59 PM 2022-1-6 edited by
- (diff)
- 2:06 PM NTTData edited by
- (diff)
- 2:03 PM NTTData edited by
- (diff)
- 1:23 PM NTTData edited by
- (diff)
- 11:29 AM 2022-1-6 edited by
- (diff)
- 11:28 AM 2022-1-6 edited by
- (diff)
- 11:09 AM 2022-1-6 edited by
- (diff)
- 11:08 AM 2022-1-6 edited by
- (diff)
- 11:01 AM 2022-1-6 edited by
- (diff)
- 10:59 AM 2022-1-6 edited by
- (diff)
- 10:37 AM Ticket #5882 (Qt crash during exit) closed by
- can't reproduce: Hi, Thanks for reporting this problem. We recommend that you …
- 10:35 AM Ticket #5701 ("Remind me later" false on new version check keeps reminding) closed by
- fixed: Fixed on 30 Nov 2021, 86d23b00f0caf436f38e89534da9cffc6882b8ba. The …
- 1:14 AM Ticket #5883 (MemoryError saving map in session) created by
- […]
- 12:57 AM Ticket #5882 (Qt crash during exit) created by
- […]
Jan 5, 2022:
- 4:06 PM Ticket #5796 (Stack overflow, possibly due to screen locking) closed by
- can't reproduce: Leaving ChimeraX running overnight also did not produce a crash. I …
- 4:03 PM Ticket #5881 (Save TIFF stack: ImageJ hyperstack shape and axes do not match) created by
- […]
- 3:15 PM Ticket #5880 (Crash after restoring session with Segger session restore error) created by
- […]
- 1:29 PM Ticket #5879 (Could not find virtual screen for QCocoaScreen) created by
- […]
- 11:23 AM Ticket #5878 (Crash on redraw with Rapid Access still showing) created by
- […]
- 10:07 AM Ticket #5875 (Crash during or after session close, possibly in check_for_changes) closed by
- can't reproduce
- 8:16 AM Ticket #5877 (Notes with markers/blobs) created by
- […]
- 7:32 AM Ticket #5876 (Crash recording spin movie) created by
- […]
- 7:31 AM Ticket #5875 (Crash during or after session close, possibly in check_for_changes) created by
- […]
Jan 4, 2022:
- 6:08 PM Ticket #5874 (Renumber residues) created by
- Hi Eric, Thank you for the update. Is it possible to renumber the …
- 5:33 PM Ticket #5873 (Dual display problem) closed by
- duplicate
- 5:22 PM Ticket #5873 (Dual display problem) created by
- […]
- 5:21 PM Ticket #5864 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Thanks for the information. The update _could_ have been the problem, …
- 5:17 PM Training edited by
- (diff)
- 5:11 PM Training edited by
- (diff)
- 5:04 PM Ticket #5868 (Chain-chooser error) closed by
- fixed: Fixed by …
- 12:30 PM Ticket #5504 (Python shell broken with PyQt 6.2) closed by
- fixed: I improved the qtconsole patch so it works with both PyQt6 and PyQt5 …
- 11:51 AM Ticket #5871 (Coordset slider doesn't start at current coordinate set) closed by
- fixed: Fixed. Code was trying to set the initial slider value but called the …
- 11:29 AM Dev2022-1-13 created by
- 11:27 AM DeveloperMeetings edited by
- (diff)
- 11:26 AM DeveloperMeetings2021 created by
- 11:25 AM DeveloperMeetings edited by
- (diff)
- 11:24 AM GroupMeetings2021 created by
- 11:23 AM DeveloperMeetings edited by
- (diff)
- 11:21 AM 2022-1-6 created by
- 11:20 AM 2021-12-16 edited by
- (diff)
- 11:19 AM DeveloperMeetings edited by
- (diff)
- 10:15 AM Ticket #5872 (Qt crash during exit) closed by
- duplicate
- 10:13 AM Ticket #5870 (Crash in event loop) closed by
- can't reproduce
- 9:56 AM Ticket #5872 (Qt crash during exit) created by
- […]
Jan 3, 2022:
- 6:45 PM Ticket #5871 (Coordset slider doesn't start at current coordinate set) created by
- […]
- 5:22 PM Ticket #5870 (Crash in event loop) created by
- […]
- 5:03 PM Ticket #5869 (Linux flavor) closed by
- not a bug: Ah, I see. I was looking at #5864 and didn't even recognize "Zorin …
- 4:52 PM Ticket #5869 (Linux flavor) created by
- Would it be possible to get the Linux flavor/release (lsb_release -a) …
- 4:46 PM Ticket #5868 (Chain-chooser error) created by
- […]
- 3:31 PM Ticket #5863 (Crash after/during saving session) closed by
- can't reproduce: User was saving a session save F:/ChimeraX/BMA/Simon/3NWV.cxs and it …
- 3:17 PM Ticket #5867 (Wrong download file name) created by
- […]
- 3:11 PM Ticket #5866 (Registration time-format error) created by
- […]
- 2:32 PM Ticket #5865 (CERTIFICATE_VERIFY_FAILED checking for newer version) created by
- […]
- 1:14 PM Ticket #5864 (Crash showing Rapid Access at startup) created by
- […]
- 10:30 AM Ticket #5861 (Crash in garbage collection) closed by
- duplicate
- 10:28 AM Ticket #5860 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 10:24 AM Ticket #5859 (Long atom spec crashes ChimeraX) closed by
- duplicate: Duplicate of #4842
- 10:17 AM Ticket #5857 (Screen change crash) closed by
- can't reproduce: version 0.91
- 9:37 AM Ticket #5855 ('Sequence' object has no attribute 'structure') closed by
- duplicate
Jan 1, 2022:
- 1:29 PM Ticket #5863 (Crash after/during saving session) created by
- […]
- 1:04 PM Ticket #5862 (Web server not responding to new-version check) created by
- […]
- 3:07 AM Ticket #5861 (Crash in garbage collection) created by
- […]
Dec 31, 2021:
- 10:00 PM Ticket #5848 (Crash recording movie) closed by
- nonchimerax: Probably graphics driver crash, Radeon, Windows. Crashed recording a …
- 9:54 PM Ticket #5841 (Crash showing side view) closed by
- duplicate: Side View just shown, got an expose event, was drawn with OpenGL and …
- 9:49 PM Ticket #5842 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) closed by
- duplicate: This ChimeraX error is fixed in the current version 1.3, was fixed …
- 9:46 PM Ticket #5845 (Graphics driver crash, macOS 11.6.1, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple graphics driver crash. Was using 132 Gbytes of memory with a 9 …
- 9:41 PM Ticket #5832 (Graphics driver crash, macOS 10.15.7, GeForce GT 650M) closed by
- nonchimerax: Apple graphics driver crash. Ancient graphics, two displays.
- 6:31 PM Ticket #5826 (Crash in OpenVR waitGetPoses on Linuc) closed by
- nonchimerax: Appears to be a bug in SteamVR on Linux. Sad that that VR is still so …
- 3:16 PM ChangeLog edited by
- (diff)
Dec 30, 2021:
- 4:56 PM Ticket #5860 (Long atom spec crashes ChimeraX) created by
- […]
- 4:55 PM Ticket #5859 (Long atom spec crashes ChimeraX) created by
- […]
- 11:32 AM Ticket #5858 (Chain-selection menus too long when there are many chains, and some ...) created by
- On Dec 30, 2021, at 6:31 AM, Antón Vila-Sanjurjo via ChimeraX-users …
- 10:47 AM Ticket #5857 (Screen change crash) created by
- […]
- 9:50 AM Ticket #5856 (Distances tool not updating) created by
- […]
- 8:28 AM Ticket #5847 (CUDA_ERROR_UNKNOWN starting simulation) closed by
- fixed: Great to hear it's working now. Happy modelling!
Dec 29, 2021:
- 10:21 PM Ticket #5855 ('Sequence' object has no attribute 'structure') created by
- […]
- 5:28 PM Ticket #5854 (Crash creating QWebEngineProfile) created by
- […]
- 3:51 PM Ticket #5853 (Make alphafold predict check that the correct AlphaFold version is ...) created by
- Have ChimeraX AlphaFold prediction google colab script check that the …
- 3:43 PM Ticket #5849 (bare "seq align" throws traceback) closed by
- fixed
- 3:29 PM Ticket #5851 (Crash removing dock widget from main window after/during AlphaFold ...) closed by
- can't reproduce: Maybe Qt6 will fix this? Several successful operations are performed …
- 3:07 PM Ticket #5852 (Ignore non-protein sequences for some operations) created by
- […]
- 1:15 PM Ticket #5851 (Crash removing dock widget from main window after/during AlphaFold ...) created by
- […]
- 11:31 AM Ticket #5846 (CUDA_ERROR_UNKNOWN starting simulation) closed by
- duplicate: Duplicate of #5487.
- 11:30 AM Ticket #5850 (Improve File→Save when multiple alignments open) created by
- […]
- 10:14 AM Ticket #5849 (bare "seq align" throws traceback) created by
- […]
- 9:47 AM Ticket #5844 (dark gray vs. gray) closed by
- not a bug
- 2:24 AM Ticket #5848 (Crash recording movie) created by
- […]
Dec 28, 2021:
- 10:31 PM Ticket #5847 (CUDA_ERROR_UNKNOWN starting simulation) created by
- […]
- 10:29 PM Ticket #5846 (CUDA_ERROR_UNKNOWN starting simulation) created by
- […]
- 2:50 PM Ticket #5845 (Graphics driver crash, macOS 11.6.1, Intel Iris Plus Graphics 640) created by
- […]
- 11:16 AM Ticket #5844 (dark gray vs. gray) created by
- […]
- 8:24 AM Ticket #5843 (VR clipping suggestions) created by
- […]
Dec 27, 2021:
- 10:55 PM Ticket #5831 (Blast session-restore failure) closed by
- fixed: Should be fixed by …
- 10:55 PM Ticket #5836 (Blast session-restore failure) closed by
- fixed: Should be fixed by …
- 5:12 PM Ticket #5842 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) created by
- […]
- 1:57 PM Ticket #5839 (Crash in event loop) closed by
- can't reproduce
- 1:53 PM Ticket #5838 (new-version query not catching exception that getpass.getuser() throws) closed by
- duplicate
- 1:40 PM Ticket #5837 (cant open chimerax) closed by
- limitation: Hi Gustav, I'm sorry, but ChimeraX is not supported on Windows 7. …
- 1:35 PM Ticket #5835 (label-height check bad) closed by
- fixed: Hi Wally! Thanks for reporting this. I've fixed the problem and the …
- 12:09 PM Ticket #5841 (Crash showing side view) created by
- […]
- 11:26 AM Ticket #5840 (SSL failure on startup checking for new version) created by
- […]
- 11:25 AM Ticket #5834 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 11:16 AM Ticket #5833 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 3:09 AM Ticket #5839 (Crash in event loop) created by
- […]
- 2:10 AM Ticket #5838 (new-version query not catching exception that getpass.getuser() throws) created by
- […]
Dec 26, 2021:
- 10:24 PM Ticket #5837 (cant open chimerax) created by
- […]
- 6:19 PM Ticket #5836 (Blast session-restore failure) created by
- […]
- 1:14 PM Ticket #5835 (label-height check bad) created by
- […]
Dec 25, 2021:
- 11:14 PM Ticket #5834 (Long atom spec crashes ChimeraX) created by
- […]
- 11:06 PM Ticket #5833 (Long atom spec crashes ChimeraX) created by
- […]
- 6:32 PM Ticket #5832 (Graphics driver crash, macOS 10.15.7, GeForce GT 650M) created by
- […]
- 1:08 AM Ticket #5831 (Blast session-restore failure) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
