Swapaa failure setting stick size

[yen-li.li@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19042
ChimeraX Version: 1.4.dev202112170201 (2021-12-17 02:01:48 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.4.dev202112170201 (2021-12-17)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open C:\Users\lilyy\Desktop\Fig4_NTD-CTD.cxs format session

Log from Wed Jan 12 19:37:22 2022UCSF ChimeraX version: 1.4.dev202112170201
(2021-12-17)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open C:\Users\lilyy\Desktop\Fig4_NTD-CTD.cxs format session

Log from Wed Jan 12 19:03:52 2022UCSF ChimeraX version: 1.4.dev202112170201
(2021-12-17)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "E:\Figures\lab meeting_100121\A3G-helix6loop3.cxs" format session

Opened csJ245_denmod_map.ccp4 as #2, grid size 185,198,138, pixel 0.835, shown
at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 0 as #3.1, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 1 as #3.2, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 2 as #3.3, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Log from Thu Sep 30 02:09:54 2021UCSF ChimeraX version: 1.3.dev202109251824
(2021-09-25)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open C:\Users\lilyy\Desktop\A3G-helix6loop3.cxs format session

Opened csJ245_denmod_map.ccp4 as #2, grid size 185,198,138, pixel 0.835, shown
at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 0 as #3.1, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 1 as #3.2, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 2 as #3.3, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Log from Mon Sep 27 19:08:38 2021UCSF ChimeraX version: 1.3.dev202109251824
(2021-09-25)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open C:\Users\lilyy\Desktop\A3G-helix6loop3.cxs format session

Opened csJ245_denmod_map.ccp4 as #2, grid size 185,198,138, pixel 0.835, shown
at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 0 as #3.1, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 1 as #3.2, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 2 as #3.3, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Log from Mon Sep 27 18:54:46 2021UCSF ChimeraX version: 1.3.dev202109251824
(2021-09-25)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open E:\Krios\20210423\csrelion\6221\coot\csJ245rsr86-coot-0.pdb format pdb

Chain information for csJ245rsr86-coot-0.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
  

> open E:\Krios\20210423\csrelion\6221\phenix\csJ245_denmod_map.ccp4 format
> ccp4

Opened csJ245_denmod_map.ccp4 as #2, grid size 185,198,138, pixel 0.835, shown
at level 0.491, step 1, values float32  

> hide atoms

> show cartoons

> transparency 50

> select #1/A:243-270,153-155,176-191, 290-304

1007 atoms, 1020 bonds, 62 residues, 1 model selected  

> style sel stick

Changed 1007 atom styles  

> show sel atoms

> select clear

> volume #2 level 1.27

> volume #2 level 0.2845

> ui tool show "Color Zone"

No atoms selected for color zoning  

> select #1/A:243-270,153-155,176-191, 290-304

1007 atoms, 1020 bonds, 62 residues, 1 model selected  

> color zone #2 near sel distance 5.01

> transparency 0

> transparency 50

> color zone #2 near sel distance 3.32

> transparency 0

> transparency 50

> hide #!2 models

> show #!2 models

> color zone #2 near sel distance 2.52

> color zone #2 near sel distance 2.4

[Repeated 1 time(s)]

> volume splitbyzone #2

Opened csJ245_denmod_map.ccp4 0 as #3.1, grid size 185,198,138, pixel 0.835,
shown at level 0.284, step 1, values float32  
Opened csJ245_denmod_map.ccp4 1 as #3.2, grid size 185,198,138, pixel 0.835,
shown at level 0.284, step 1, values float32  

> hide #!3 models

> hide #!3.2 models

> show #!3.2 models

> hide #!3.1 models

> transparency #3.2.1 50

> select clear

> hide #1 ribbons

> select clear

[Repeated 1 time(s)]

> set bgColor white

No atoms selected for color zoning  

> select #1/A:243-270,153-155,176-191, 290-304

1007 atoms, 1020 bonds, 62 residues, 1 model selected  

> color zone #3.2 near sel distance 2.11

> transparency #3.2.1 0

> hide #!3 models

> show #!3 models

> hide #!3.2 models

> show #!3.2 models

> transparency #3.2.1 50

> color zone #3.2 near sel distance 1.63

> transparency #3.2.1 0

> transparency #3.2.1 50

> volume #3.1 level 0.2845

> select #1

14932 atoms, 15144 bonds, 10 pseudobonds, 915 residues, 2 models selected  

> ~select #1

Nothing selected  

> select #1

14932 atoms, 15144 bonds, 10 pseudobonds, 915 residues, 2 models selected  

> hide #!3.1 models

> volume #3.2 level 1.061

> close #3

> select #1/A:243-270,153-155,176-191, 288-304

1037 atoms, 1051 bonds, 64 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 1037 atom styles  

> select #1/A:243-270,153-155,176-191, 288-304

1037 atoms, 1051 bonds, 64 residues, 1 model selected  

> show #!2 models

> color zone #2 near sel distance 2.4

> color zone #2 near sel distance 5.07

> transparency 0

> transparency 50

Alignment identifier is 1/A  

> show ZN

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show ligands

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> select #1/A:243-270,153-155,176-191, 288-304, 401

1038 atoms, 1051 bonds, 3 pseudobonds, 65 residues, 2 models selected  

> show #1/A:401

> select clear

No atoms selected for color zoning  

> select #1/A:243-270,153-155,176-191, 288-304, 401

1038 atoms, 1051 bonds, 3 pseudobonds, 65 residues, 2 models selected  

> color zone #2 near sel distance 3.32

> transparency 0

> transparency 50

> color zone #2 near sel distance 2.74

> color zone #2 near sel distance 2.52

[Repeated 1 time(s)]

> hide #!2 models

> show #!2 models

> color zone #2 near sel distance 2.48

> hide #!2 models

> show #!2 models

> volume #2 level 0.364

> transparency 0

> transparency 50

> volume #2 level 0.7455

> volume #2 level 0.6501

> color zone #2 near sel distance 2.48

> color zone #2 near sel distance 2.11

> volume #2 level 0.6

> color zone #2 near sel distance 2.48

[Repeated 1 time(s)]

> transparency 0

> transparency 50

> color zone #2 near sel distance 2.11

> transparency 0

> transparency 50

Need to color zone map before it can be split  

> select #1/A:243-270,153-155,176-191, 288-304, 401

1038 atoms, 1051 bonds, 3 pseudobonds, 65 residues, 2 models selected  

Need to color zone map before it can be split  

> color zone #2 near sel distance 2.11

> volume splitbyzone #2

Opened csJ245_denmod_map.ccp4 0 as #3.1, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 1 as #3.2, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  
Opened csJ245_denmod_map.ccp4 2 as #3.3, grid size 185,198,138, pixel 0.835,
shown at level 0.6, step 1, values float32  

> hide #!3.2 models

> show #!3.2 models

> hide #!3.3 models

> show #!3.3 models

> hide #!3.3 models

> show #!3.3 models

> hide #!3.3 models

> show #!3.3 models

> hide #!3.3 models

> show #!3.3 models

> hide #!3.1 models

> transparency #3.2.1#3.3.1 50

> color zone #2 near sel distance 2.4

[Repeated 1 time(s)]

> color zone #3.2 near sel distance 2.01

> color zone #3.3 near sel distance 2.6

> color zone #3.3 near sel distance 4.68

[Repeated 1 time(s)]

> transparency #3.2.1#3.3.1 0

> transparency #3.2.1#3.3.1 50

> select up

1666 atoms, 1694 bonds, 3 pseudobonds, 102 residues, 2 models selected  

> select up

6377 atoms, 6485 bonds, 3 pseudobonds, 386 residues, 2 models selected  

> volume #!3.2-3 style mesh

> volume #3 subdivideSurface true subdivisionLevels 1

> select #1/A:243-270,153-155,176-191, 288-304, 401

1038 atoms, 1051 bonds, 3 pseudobonds, 65 residues, 2 models selected  

> color byhetero

> select clear

> ui tool show "Surface Zone"

No atoms selected for zoning  

> select #1/A:243-270,153-155,176-191, 288-304, 401

1038 atoms, 1051 bonds, 3 pseudobonds, 65 residues, 2 models selected  

> surface zone #3.2 nearAtoms sel distance 2.44

> surface zone #3.2 nearAtoms sel distance 1.73

> select #1/A:243-270,153-155,176-191, 288-304, 401

1038 atoms, 1051 bonds, 3 pseudobonds, 65 residues, 2 models selected  

> show #1/A:243-270,153-155,176-191, 288-304, 401 ribbons

> select clear

No atoms selected for zoning  

[Repeated 1 time(s)]

> save C:/Users/lilyy/Desktop/A3G-helix6loop3.cxs includeMaps true

> color #1 #b17dc1

> color #1 #bb1177

> color #1 #77bb99

> color #1 #77bb66

> color #1 mediumslateblue

> color byhetero

> color #3.2 #b299ec80 models

> color #3.3 #b2b4e380 models

> color #3.3 #b299ec80 models

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 color #7b68ee

> ~label

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 bgColor #7b68ee

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 color white bgColor
> #7b68ee

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 color black

> ~label

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 color black

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 bgColor #7b68ee

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 color white bgColor
> #7b68ee

> ui mousemode right "move label"

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 color white bgColor
> yellow

> label #1/A:256,264,250,154,249,288,291,257,401 height 1 color white bgColor
> green

> select /A:264@OD1

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:264@OD2

1 atom, 1 residue, 1 model selected  

> save C:/Users/lilyy/Desktop/A3G-helix6loop3.cxs

> ui tool show H-Bonds

> hbonds sel restrict cross intraMol false intraRes false reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 csJ245rsr86-coot-0.pdb
    
    0 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    

  
0 hydrogen bonds found  

> select /A:256@HH21

1 atom, 1 residue, 1 model selected  

> ui tool show H-Bonds

> hbonds sel restrict cross intraMol false intraRes false reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 csJ245rsr86-coot-0.pdb
    
    0 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    

  
0 hydrogen bonds found  

> hbonds sel restrict cross intraRes false reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 csJ245rsr86-coot-0.pdb
    
    0 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    

  
0 hydrogen bonds found  

> hbonds sel restrict cross intraRes false reveal true log true
    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 csJ245rsr86-coot-0.pdb
    
    0 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    

  
0 hydrogen bonds found  

> ui mousemode right distance

> distance /A:256@HH21 /A:264@OD2

Distance between /A ARG 256 HH21 and ASP 264 OD2: 2.541Å  

> ~distance

> ui tool show Contacts

> contacts sel restrict cross intraMol false reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: False
    
    0 contacts
    atom1  atom2  overlap  distance
    

  
No contacts  

> select clear

> select /A:256@HH21

1 atom, 1 residue, 1 model selected  

> ui tool show Contacts

> contacts sel restrict cross intraMol false reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: False
    
    0 contacts
    atom1  atom2  overlap  distance
    

  
No contacts  

> contacts sel restrict cross intraMol false reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: False
    
    0 contacts
    atom1  atom2  overlap  distance
    

  
No contacts  

> ui mousemode right distance

> distance /A:256@HH21 /A:264@OD2

Distance between /A ARG 256 HH21 and ASP 264 OD2: 2.541Å  

> distance /A:256@HE /A:264@OD2

Distance between /A ARG 256 HE and ASP 264 OD2: 2.010Å  

> ui mousemode right distance

> distance /A:249@HE2 /A:250@NE2

Distance between /A LYS 249 HE2 and HIS 250 NE2: 2.563Å  

> ~distance

> distance /A:154@HH /A:264@OD2

Distance between /A TYR 154 HH and ASP 264 OD2: 20.981Å  

> ~distance

> ui mousemode right distance

> distance /A:264@OD2 /A:256@HH21

Distance between /A ASP 264 OD2 and ARG 256 HH21: 2.541Å  

> distance /A:264@OD1 /A:256@HH21

Distance between /A ASP 264 OD1 and ARG 256 HH21: 2.811Å  

> save C:/Users/lilyy/Desktop/A3G-helix6loop3.cxs includeMaps true

——— End of log from Mon Sep 27 18:54:46 2021 ———

opened ChimeraX session  

> select #1/A:401

1 atom, 1 residue, 1 model selected  

> ui tool show "Surface Zone"

> surface zone #3.3 nearAtoms sel distance 5.01

[Repeated 1 time(s)]

> surface dust #3.2 size 8.35

> surface dust #3.3 size 8.35

> ui tool show "Hide Dust"

> surface dust #3.2 size 0.83

> surface undust #3.2

> hide #!3.3 models

> show #!3.3 models

> surface zone #3.3 nearAtoms sel distance 5.01

> surface dust #3.2 size 8.35

> surface dust #3.3 size 8.35

> surface zone #3.3 nearAtoms sel distance 5.01

> select clear

> select #1/A:154

21 atoms, 21 bonds, 1 residue, 1 model selected  

> surface zone #3.2 nearAtoms sel distance 2.1

> select #1/A:243-270,153-155,176-191, 288-304, 401

1038 atoms, 1051 bonds, 5 pseudobonds, 65 residues, 3 models selected  

> surface zone #3.2 nearAtoms sel distance 2.1

> select clear

> surface dust #3.2 size 8.35

> surface dust #3.3 size 8.35

> surface dust #3.2 size 8.35

> surface dust #3.3 size 8.35

> select #1/A:401

1 atom, 1 residue, 1 model selected  

> surface zone #3.3 nearAtoms sel distance 5.01

> select clear

> save C:/Users/lilyy/Desktop/A3G-helix6loop3.cxs includeMaps true

——— End of log from Mon Sep 27 19:08:38 2021 ———

opened ChimeraX session  

> ~distance

> label #1/A:180 height 1 bgColor green

> save C:\Users\lilyy\Desktop\image1.png supersample 3

> save C:/Users/lilyy/Desktop/A3G-helix6loop3.cxs

——— End of log from Thu Sep 30 02:09:54 2021 ———

opened ChimeraX session  

> open
> E:\Krios\20210423\csrelion\6221\coot\csJ245RNA1a-rsr237-ERRASER330-M0_real_space_refined_646-coot0.pdb
> format pdb

Chain information for
csJ245RNA1a-rsr237-ERRASER330-M0_real_space_refined_646-coot0.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
K | No description available  
  

> close #2-3#3.1-3

> select #4

7840 atoms, 8076 bonds, 10 pseudobonds, 933 residues, 2 models selected  

> hide sel atoms

> show sel cartoons

> hide sel cartoons

> select #4/B:40-44

55 atoms, 58 bonds, 5 residues, 1 model selected  

> select #4/B:41-45

52 atoms, 54 bonds, 5 residues, 1 model selected  

> show sel cartoons

> select #4/K

174 atoms, 196 bonds, 8 residues, 1 model selected  

> style sel stick

Changed 174 atom styles  

> show sel atoms

> hide sel atoms

> hide #!4 models

> show #!4 models

> select #4/K:4

22 atoms, 24 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 22 atom styles  

> show sel atoms

> select #4/A:153-155,176-191,239-243,243-270,288-304

564 atoms, 579 bonds, 68 residues, 1 model selected  

> show sel cartoons

> hide #!1 models

> select #4/A:154,180,191,238,249-250,256-257,264,269-270,288,291,401

125 atoms, 119 bonds, 3 pseudobonds, 14 residues, 2 models selected  

> style sel stick

Changed 125 atom styles  

> show sel atoms

> color sel byhetero

> select #4:44

43 atoms, 41 bonds, 5 residues, 1 model selected  

> style sel stick

Changed 43 atom styles  

> show sel atoms

> hide #4:44

> hide #4/B:44

> select #4/B:44

12 atoms, 12 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 12 atom styles  

> show sel atoms

> select clear

> select #4/B:44

12 atoms, 12 bonds, 1 residue, 1 model selected  

> color sel byhetero

> hide #!4 models

> show #!1 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> hide #!1 models

> show #!4 models

> show #!1 models

> hide #!4 models

> show #!4 models

> hide #!1 models

> hide #!4 models

> show #!1 models

> show #!4 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> color #4/A 7b68ee

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword  

> color #4/A #7b68ee

> color #4/B #82ac10

> color #4/K gold

> color sel byhetero

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

22 atoms, 24 bonds, 1 residue, 1 model selected  

> color sel byhetero

> select clear

> select #4/A:154,180,191,238,249-250,256-257,264,269-270,288,291,401

125 atoms, 119 bonds, 3 pseudobonds, 14 residues, 2 models selected  

> color sel byhetero

> select #4/A:154,180,191,238,249-250,256-257,264,269-270,288,291,401
> #4/B:41-44 #4/K:4

190 atoms, 188 bonds, 3 pseudobonds, 19 residues, 2 models selected  

> save C:/Users/lilyy/Desktop/Fig4_NTD-CTD.cxs

——— End of log from Wed Jan 12 19:03:52 2022 ———

opened ChimeraX session  

> hide #1/A:176-177 ribbons

> select clear

> ui tool show "Side View"

> select #1/A

6377 atoms, 6485 bonds, 6 pseudobonds, 386 residues, 2 models selected  

> show #!4 surfaces

> select #4

7840 atoms, 8076 bonds, 10 pseudobonds, 933 residues, 8 models selected  

> transparency #4 50

> hide #4 surfaces

> close #1

> rename #4 id #1

> save C:\Users\lilyy\Desktop\image1.png supersample 3

> select clear

> save C:/Users/lilyy/Desktop/Fig4_NTD-CTD.cxs

——— End of log from Wed Jan 12 19:37:22 2022 ———

opened ChimeraX session  

> select /A:264@CG

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 2 models selected  

> swapaa interactive #1/A:264 ASP

/A ASP 264: phi -63.7, psi -40.8 trans  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4.dev202112170201\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 297, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX 1.4.dev202112170201\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4.dev202112170201\bin\lib\site-
packages\chimerax\swap_res\cmd.py", line 134, in rotamers  
size(session, rot_objects, stick_radius=0.1)  
File "C:\Program Files\ChimeraX 1.4.dev202112170201\bin\lib\site-
packages\chimerax\std_commands\size.py", line 61, in size  
is_delta, amount = stick_radius  
TypeError: cannot unpack non-iterable float object  
  
TypeError: cannot unpack non-iterable float object  
  
File "C:\Program Files\ChimeraX 1.4.dev202112170201\bin\lib\site-
packages\chimerax\std_commands\size.py", line 61, in size  
is_delta, amount = stick_radius  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 471.68
OpenGL renderer: NVIDIA GeForce RTX 2060 SUPER/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Home (Build 19042)
Memory: 34,261,569,536
MaxProcessMemory: 137,438,953,344
CPU: 16 Intel(R) Core(TM) i9-9900K CPU @ 3.60GHz
OSLanguage: en-US
Locale: ('zh_TW', 'cp950')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.32
    ChimeraX-AtomicLibrary: 5.0
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4.dev202112170201
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.1
    ChimeraX-ModelPanel: 1.3.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.8
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.7.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.15.2
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.24
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

[pett]

Hi Yen-Li,

Thanks for reporting this problem. It was fixed 3 days after the version you're running, so if you get a current daily build then you will be able to use the Rotamers tool.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab