Opened 4 years ago
Closed 4 years ago
#5884 closed defect (can't reproduce)
Crash in trigger handler after saving image
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Core | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.19043 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0x8001010e code 0xWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e 8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010ecode 0x code 0x8001010e8001010e Windows fatal exception: Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e code 0xWindows fatal exception: code 0x8001010e 8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0xWindows fatal exception: code 0x8001010e 8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x 8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e 8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e 8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0xWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x 8001010e Windows fatal exception: Windows fatal exception: code 0x8001010ecode 0x 8001010e Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e 8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x 8001010e code 0xWindows fatal exception: code 0x8001010e8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e 8001010ecode 0x 8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e 8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0xWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e8001010e Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x 8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0xWindows fatal exception: code 0xcode 0xWindows fatal exception: 8001010ecode 0x8001010e8001010e Windows fatal exception: code 0x8001010e8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0xWindows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0xWindows fatal exception: code 0x8001010e 8001010e 8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010e code 0xWindows fatal exception: code 0x8001010e 8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\cWindows fatal exception: himerax\open_command\dialog.py"code 0x, line Windows fatal exception: 107code 0x in 8001010e Windows fatal exception: File code 0x"8001010e8001010eC :\Windows fatal exception: Pcode 0xr8001010eo grWindows fatal exception: acode 0xm8001010e FWindows fatal exception: icode 0xl8001010ee s\ ChWindows fatal exception: icode 0xm8001010ee raWindows fatal exception: Xcode 0x 8001010e1 .3Windows fatal exception: \code 0xbWindows fatal exception: code 0xin\lib\site-p8001010ea c8001010ek agWindows fatal exception: code 0x8001010e es\chimerax\ui\gui.py"Windows fatal exception: , line code 0xWindows fatal exception: code 0x8001010e 301Windows fatal exception: 8001010ecode 0x 8001010e in event_loop Windows fatal exception: File code 0x8001010e "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChWindows fatal exception: code 0xWindows fatal exception: 8001010e imeraX_main.py"Windows fatal exception: , line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"code 0x, line 1018 in File 8001010e"C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:Windows fatal exception: code 0x8001010ecode 0x \8001010eP rogWindows fatal exception: rcode 0xa8001010em FWindows fatal exception: icode 0xlWindows fatal exception: code 0xes\ChimeraX 1.3\bin\lib\runpy.py"8001010e, line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0xWindows fatal exception: code 0x8001010e 00006d40Windows fatal exception: code 0x8001010e8001010e (most recent call first): Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e File "Windows fatal exception: code 0x8001010e CWindows fatal exception: code 0x8001010e :\Program Files\ChimeraX 1.3\binWindows fatal exception: \code 0xl8001010ei b\Windows fatal exception: scode 0xi8001010et e-Windows fatal exception: pcode 0xa8001010ec kaWindows fatal exception: gcode 0xe8001010es \chWindows fatal exception: icode 0xm8001010ee rWindows fatal exception: acode 0xx8001010e\ open_command\dialog.py"Windows fatal exception: code 0x8001010e , line 135 in sWindows fatal exception: code 0x8001010e hoWindows fatal exception: wcode 0x_8001010eo pen_file_diaWindows fatal exception: code 0x8001010e log Windows fatal exception: code 0x8001010e File Windows fatal exception: code 0x8001010e "Windows fatal exception: code 0x8001010e CWindows fatal exception: code 0x8001010e :Windows fatal exception: code 0x8001010e \Windows fatal exception: code 0x8001010e PWindows fatal exception: code 0x8001010e rogram Files\ChimeraX 1.3\bin\lib\site-packages\chimWindows fatal exception: ecode 0xr8001010ea x\Windows fatal exception: ocode 0xp8001010ee n_Windows fatal exception: ccode 0xo8001010em mand\dialoWindows fatal exception: gcode 0x.8001010ep y"Windows fatal exception: , line code 0x1078001010e in code 0x 8001010e File "CWindows fatal exception: Windows fatal exception: code 0x8001010e :Windows fatal exception: code 0x8001010e \Windows fatal exception: code 0x8001010e PWindows fatal exception: code 0x8001010e rogram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"code 0x, line 301 in event_loop File 8001010e"C:\Program Files\ChimeraX 1.3\bin\lib\site-pa ckagWindows fatal exception: ecode 0xs8001010e\ ChWindows fatal exception: icode 0xm8001010ee raX_main.py"Windows fatal exception: , line 867 in init code 0x File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"8001010e, line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_moWindows fatal exception: dcode 0xu8001010ele_as _mWindows fatal exception: code 0x8001010eain Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\Windows fatal exception: scode 0xi8001010et e-packages\chimerax\open_coWindows fatal exception: mmand\dialcode 0xog.py", line 135 in show_open_file_dialog 8001010e File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-Windows fatal exception: code 0x8001010e packages\chimerax\ui\gui.py", line 301 in event_loop Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: , line 867 in init code 0x8001010e File "C:\Windows fatal exception: code 0x8001010e Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00006d40 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line 228 in _activate Windows fatal exception: access violation ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "C:\Users\Abinaya Balakrishnan\Downloads\3hvp.pdb" format pdb 3hvp.pdb title: Conserved folding In retroviral proteases. Crystal structure of A synthetic hiv-1 protease [more info...] Chain information for 3hvp.pdb #1 --- Chain | Description | UniProt A | unliganded hiv-1 protease | POL_HV1A2 > set bgColor white > set bgColor black > set bgColor white > lighting simple > lighting soft > lighting full > lighting simple > lighting full > lighting simple > lighting full > windowsize 500 500 > windowsize 500 500 > save "C:/Users/Abinaya Balakrishnan/Desktop/IDP/Chimera X/HIV Protease.cxs" > save "C:\Users\Abinaya Balakrishnan\Desktop\image1.png" supersample 3 > help help:index.html > ui mousemode right "crop volume" > view orient > volume step 1 No volumes specified > volume step 2 No volumes specified > view orient > rainbow > color bypolymer > color bynucleotide > color bypolymer > coulombic Using Amber 20 recommended default charges and atom types for standard residues Assigning partial charges to residue ABA (net charge +0) with am1-bcc method Running ANTECHAMBER command: C:/Program Files/ChimeraX 1.3/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i C:\Users\ABINAY~1\AppData\Local\Temp\tmpzagjqca1\ante.in.mol2 -fi mol2 -o C:\Users\ABINAY~1\AppData\Local\Temp\tmpzagjqca1\ante.out.mol2 -fo mol2 -c bcc -nc 0 -j 5 -s 2 -dr n (ABA) `` (ABA) `Welcome to antechamber 20.0: molecular input file processor.` (ABA) `` (ABA) `Info: Finished reading file (C:\Users\ABINAY~1\AppData\Local\Temp\tmpzagjqca1\ante.in.mol2); atoms read (25), bonds read (24).` (ABA) `Info: Determining atomic numbers from atomic symbols which are case sensitive.` (ABA) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/bondtype" -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac` (ABA) `bash.exe: warning: could not find /tmp, please create!` (ABA) `` (ABA) `` (ABA) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/atomtype" -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff` (ABA) `bash.exe: warning: could not find /tmp, please create!` Failure running ANTECHAMBER for residue ABA Check reply log for details > rainbow > color bypolymer > rainbow > color bypolymer > style stick Changed 758 atom styles > show cartoons > color cyan > color light gray > color #aaff90ff > color #fffac6ff > color #c2c2ffff > color #cfffedff > color #fff9acff > color #baff70ff > color #b9ff6fff > color #c9ff8fff > color #bcff75ff > color #d6ff93ff > color #e0ffaeff > color #e6ffc1ff > color #e6ffcbff > color #faffe0ff > color #ffe5e0ff > color #ffb6acff > color #fff1acff > color #ffd0a1ff > color #ffffffff > color #d6e7f4ff > color #ccccccff > color #f0f0f0ff > color #828790ff > color #f0f0f0ff > color #828790ff > color #ffd0a1ff > color #fcce9fff > color #facc9eff > color #f8ca9dff > color #efc397ff > color #eabf94ff > color #e3b98fff > color #dcb38bff > color #d5ae86ff > color #d0aa83ff > color #c7a27eff > color #be9b78ff > color #ba9875ff > color #b99775ff > color #b89674ff > color #b69473ff > color #b59472ff > color #b69473ff > color #ba9875ff > color #c6a27dff > color #cea882ff > view orient > windowsize 500 500 > save "C:\Users\Abinaya Balakrishnan\Desktop\image2.png" supersample 3 > save "C:/Users/Abinaya Balakrishnan/Desktop/IDP/Chimera X/HIV protease.jpg" > width 500 height 500 supersample 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.148201 Core Profile Forward-Compatible Context 20.50.02.08 27.20.15002.8001 OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics OpenGL vendor: ATI Technologies Inc. Manufacturer: HP Model: HP Laptop 15g-dx0xxx OS: Microsoft Windows 10 Home Single Language (Build 19043) Memory: 8,224,260,096 MaxProcessMemory: 137,438,953,344 CPU: 8 AMD Ryzen 5 2500U with Radeon Vega Mobile Gfx OSLanguage: en-US Locale: ('en_IN', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
Cc: | added |
---|---|
Component: | Unassigned → Core |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash in trigger handler after saving image |
comment:2 by , 4 years ago
Resolution: | → can't reproduce |
---|---|
Status: | accepted → closed |
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