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Opened 4 years ago
Closed 3 years ago
#5957 closed defect (fixed)
Ramachandran plot accessing deleted widgets
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Windows-10-10.0.22000 ChimeraX Version: 0.93 (2020-04-03) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.93 (2020-04-03) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:\Users\Lenye\Dropbox\CryoEM- > NitAEBC191-Frankfurt\CynD-C1-WT\WT_model_high_res_superimposed.mrc format > mrc Opened WT_model_high_res_superimposed.mrc, grid size 300,300,300, pixel 1.05, shown at level 0.0119, step 2, values float32 > volume #1 step 1 > open2 C:/Users/Lenye/Desktop/Truncated_S29AI88F_CynD.pdb Summary of feedback from opening <_io.textiowrapper name="C:/Users/Lenye/Desktop/Truncated_S29AI88F_CynD.pdb" mode="rt" encoding="utf-8"> --- warnings | Ignored bad PDB record found on line 284 DEVIATIONS FROM IDEAL VALUES. Ignored bad PDB record found on line 285 GEOMETRY RESTRAINTS LIBRARY: CDL v1.2 Ignored bad PDB record found on line 286 MOLPROBITY STATISTICS. Ignored bad PDB record found on line 59464 END Chain information for Truncated_S29AI88F_CynD.pdb #2 --- Chain | Description A | No description available B H J M O | No description available C D E G I K | No description available > select all 59166 atoms, 60006 bonds, 3 models selected > addh Summary of feedback from adding hydrogens to Truncated_S29AI88F_CynD.pdb #2 --- notes | No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain A; guessing termini instead No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain B; guessing termini instead No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain C; guessing termini instead No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain D; guessing termini instead No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain E; guessing termini instead 7 messages similar to the above omitted Chain-initial residues that are actual N termini: /A SER 3, /B SER 3, /C SER 3, /D SER 3, /E SER 3, /G SER 3, /H SER 3, /I SER 3, /J SER 3, /K SER 3, /M SER 3, /O SER 3 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: Chain-final residues that are not actual C termini: /A ILE 319, /B ILE 319, /C ILE 319, /D ILE 319, /E ILE 319, /G ILE 319, /H ILE 319, /I ILE 319, /J ILE 319, /K ILE 319, /M ILE 319, /O ILE 319 3247 hydrogen bonds /A ILE 319 is not terminus, removing H atom from 'C' /B ILE 319 is not terminus, removing H atom from 'C' /C ILE 319 is not terminus, removing H atom from 'C' /D ILE 319 is not terminus, removing H atom from 'C' /E ILE 319 is not terminus, removing H atom from 'C' 7 messages similar to the above omitted 120 hydrogens added Expected an objects specifier or a keyword Expected an objects specifier or a keyword > select ::name="PHE" 3600 atoms, 3600 bonds, 1 model selected > select clear Expected an objects specifier or a keyword > style stick Changed 59286 atom styles > show cartoons > hide atoms > select /D:83 19 atoms, 18 bonds, 1 model selected > select up 199 atoms, 199 bonds, 1 model selected > toolshed show ISOLDE > set selectionWidth 4 Chain information for Truncated_S29AI88F_CynD.pdb --- Chain | Description 2.2/A | No description available 2.2/B 2.2/H 2.2/J 2.2/M 2.2/O | No description available 2.2/C 2.2/D 2.2/E 2.2/G 2.2/I 2.2/K | No description available Done loading forcefield > select up 199 atoms, 199 bonds, 1 model selected QWidget::repaint: Recursive repaint detected > select /A 4949 atoms, 5019 bonds, 1 model selected > select /B:83 19 atoms, 18 bonds, 1 model selected > select up 199 atoms, 199 bonds, 1 model selected > toolshed show ISOLDE > set selectionWidth 4 Done loading forcefield QWindowsWindow::setGeometry: Unable to set geometry 1920x1035+0+29 (frame: 1938x1082-9-9) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY1". Resulting geometry: 1920x991+0+29 (frame: 1938x1038-9-9) margins: 9, 38, 9, 9 minimum size: 422x1035 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=440,1082 maxtrack=0,0) > select clear > select up 199 atoms, 199 bonds, 1 model selected Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 275, in _model_changed_cb self.update_scatter() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 372, in update_scatter if not self.visible: File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible return self.parent.isVisible() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 275, in _model_changed_cb self.update_scatter() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 372, in update_scatter if not self.visible: File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible return self.parent.isVisible() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() See log for complete Python traceback. [a _lot_ of this deleted] Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 275, in _model_changed_cb self.update_scatter() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 372, in update_scatter if not self.visible: File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible return self.parent.isVisible() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 275, in _model_changed_cb self.update_scatter() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 372, in update_scatter if not self.visible: File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible return self.parent.isVisible() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 275, in _model_changed_cb self.update_scatter() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 372, in update_scatter if not self.visible: File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible return self.parent.isVisible() File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site- packages\chimerax\isolde\isolde.py", line 2198, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 441.37 OpenGL renderer: GeForce RTX 2080 with Max-Q Design/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Acer Model: Predator PT515-51 OS: Microsoft Windows 11 Home Single Language (Build 22000) Memory: 17,098,264,576 MaxProcessMemory: 137,438,953,344 CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz"
Change History (3)
comment:1 by , 4 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Ramachandran plot accessing deleted widgets |
follow-up: 2 comment:2 by , 4 years ago
That's a really? ancient version. If you update to ChimeraX 1.3 and the matching ISOLDE version, this problem should be gone (along with quite a few others).
________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: 19 January 2022 17:15
Cc: DLMLEN001@myuct.ac.za <DLMLEN001@myuct.ac.za>; Tristan Croll <tic20@cam.ac.uk>
Subject: Re: [ChimeraX] #5957: Ramachandran plot accessing deleted widgets (was: ChimeraX bug report submission)
#5957: Ramachandran plot accessing deleted widgets
----------------------------------+---------------------------
Reporter: DLMLEN001@… | Owner: Tristan Croll
Type: defect | Status: assigned
Priority: normal | Milestone:
Component: Third Party | Version:
Resolution: | Keywords:
Blocked By: | Blocking:
Notify when closed: | Platform: all
Project: ChimeraX |
----------------------------------+---------------------------
Changes (by pett):
* status: new => assigned
* component: Unassigned => Third Party
* project: => ChimeraX
* platform: => all
* owner: (none) => Tristan Croll
Old description:
New description:
{{{
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 0.93 (2020-04-03)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 0.93 (2020-04-03)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:\Users\Lenye\Dropbox\CryoEM-
> NitAEBC191-Frankfurt\CynD-C1-WT\WT_model_high_res_superimposed.mrc
format
> mrc
Opened WT_model_high_res_superimposed.mrc, grid size 300,300,300, pixel
1.05,
shown at level 0.0119, step 2, values float32
> volume #1 step 1
> open2 C:/Users/Lenye/Desktop/Truncated_S29AI88F_CynD.pdb
Summary of feedback from opening <_io.textiowrapper
name="C:/Users/Lenye/Desktop/Truncated_S29AI88F_CynD.pdb" mode="rt"
encoding="utf-8">
---
warnings | Ignored bad PDB record found on line 284
DEVIATIONS FROM IDEAL VALUES.
Ignored bad PDB record found on line 285
GEOMETRY RESTRAINTS LIBRARY: CDL v1.2
Ignored bad PDB record found on line 286
MOLPROBITY STATISTICS.
Ignored bad PDB record found on line 59464
END
Chain information for Truncated_S29AI88F_CynD.pdb #2
---
Chain | Description
A | No description available
B H J M O | No description available
C D E G I K | No description available
> select all
59166 atoms, 60006 bonds, 3 models selected
> addh
Summary of feedback from adding hydrogens to Truncated_S29AI88F_CynD.pdb
#2
---
notes | No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2)
chain A;
guessing termini instead
No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain B;
guessing termini instead
No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain C;
guessing termini instead
No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain D;
guessing termini instead
No usable SEQRES records for Truncated_S29AI88F_CynD.pdb (#2) chain E;
guessing termini instead
7 messages similar to the above omitted
Chain-initial residues that are actual N termini: /A SER 3, /B SER 3, /C
SER
3, /D SER 3, /E SER 3, /G SER 3, /H SER 3, /I SER 3, /J SER 3, /K SER 3,
/M
SER 3, /O SER 3
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini: /A ILE 319, /B ILE
319, /C
ILE 319, /D ILE 319, /E ILE 319, /G ILE 319, /H ILE 319, /I ILE 319, /J
ILE
319, /K ILE 319, /M ILE 319, /O ILE 319
3247 hydrogen bonds
/A ILE 319 is not terminus, removing H atom from 'C'
/B ILE 319 is not terminus, removing H atom from 'C'
/C ILE 319 is not terminus, removing H atom from 'C'
/D ILE 319 is not terminus, removing H atom from 'C'
/E ILE 319 is not terminus, removing H atom from 'C'
7 messages similar to the above omitted
120 hydrogens added
Expected an objects specifier or a keyword
Expected an objects specifier or a keyword
> select ::name="PHE"
3600 atoms, 3600 bonds, 1 model selected
> select clear
Expected an objects specifier or a keyword
> style stick
Changed 59286 atom styles
> show cartoons
> hide atoms
> select /D:83
19 atoms, 18 bonds, 1 model selected
> select up
199 atoms, 199 bonds, 1 model selected
> toolshed show ISOLDE
> set selectionWidth 4
Chain information for Truncated_S29AI88F_CynD.pdb
---
Chain | Description
2.2/A | No description available
2.2/B 2.2/H 2.2/J 2.2/M 2.2/O | No description available
2.2/C 2.2/D 2.2/E 2.2/G 2.2/I 2.2/K | No description available
Done loading forcefield
> select up
199 atoms, 199 bonds, 1 model selected
QWidget::repaint: Recursive repaint detected
> select /A
4949 atoms, 5019 bonds, 1 model selected
> select /B:83
19 atoms, 18 bonds, 1 model selected
> select up
199 atoms, 199 bonds, 1 model selected
> toolshed show ISOLDE
> set selectionWidth 4
Done loading forcefield
QWindowsWindow::setGeometry: Unable to set geometry 1920x1035+0+29 (frame:
1938x1082-9-9) on QWidgetWindow/"MainWindowClassWindow" on
"\\\\.\DISPLAY1".
Resulting geometry: 1920x991+0+29 (frame: 1938x1038-9-9) margins: 9, 38,
9, 9
minimum size: 422x1035 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=440,1082
maxtrack=0,0)
> select clear
> select up
199 atoms, 199 bonds, 1 model selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 275, in
_model_changed_cb
self.update_scatter()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 372, in
update_scatter
if not self.visible:
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible
return self.parent.isVisible()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 275, in
_model_changed_cb
self.update_scatter()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 372, in
update_scatter
if not self.visible:
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible
return self.parent.isVisible()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
See log for complete Python traceback.
[a _lot_ of this deleted]
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 275, in
_model_changed_cb
self.update_scatter()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 372, in
update_scatter
if not self.visible:
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible
return self.parent.isVisible()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 275, in
_model_changed_cb
self.update_scatter()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 372, in
update_scatter
if not self.visible:
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible
return self.parent.isVisible()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 275, in
_model_changed_cb
self.update_scatter()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 372, in
update_scatter
if not self.visible:
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 283, in visible
return self.parent.isVisible()
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\validation\ramaplot.py", line 279, in parent
return self.container.parentWidget()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
Error processing trigger "changes":
RuntimeError: wrapped C/C++ object of type QLabel has been deleted
File "C:\Users\Lenye\AppData\Local\UCSF\ChimeraX\0.93\site-
packages\chimerax\isolde\isolde.py", line 2198, in
_update_selected_residue_info_live
self.iw._rebuild_sel_res_pep_info.setText(pep_type)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 441.37
OpenGL renderer: GeForce RTX 2080 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Acer
Model: Predator PT515-51
OS: Microsoft Windows 11 Home Single Language (Build 22000)
Memory: 17,098,264,576
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz"
}}}
--
Comment:
Reported by Lenye Diamini
--
Ticket URL: <https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/5957#comment:1>
ChimeraX <https://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker
comment:3 by , 3 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Ramachandran plot was completely reworked in the ISOLDE 1.4 release.
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Reported by Lenye Diamini