The following bug report has been submitted:
Platform: Windows-10-10.0.19042
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #1
---
Chain | Description | UniProt
A B C | protein (black beetle virus capsid protein) | COAT_BBV
D E F | protein (black beetle virus capsid protein) | COAT_BBV
N | RNA (5'-R(*up*CP*up*up*ap*up*ap*up*CP*U)-3') |
Non-standard residues in 2bbv #1
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> color byattribute chain
No known/registered numeric attribute chain
> color bychain
> log metadata #1
Metadata for 2bbv #1
---
Title | The refined three-dimensional structure of an insect virus At 2.8
angstroms resolution
Citations | Wery, J.P., Reddy, V.S., Hosur, M.V., Johnson, J.E. (1994). The
refined three-dimensional structure of an insect virus at 2.8 A resolution.
J.Mol.Biol., 235, 565-586. PMID: 8289282. DOI: 10.1006/jmbi.1994.1014
Fisher, A.J., Johnson, J.E. (1993). Ordered Duplex RNA Controls Capsid
Architecture in an Icosahedral Animal Virus. Nature, 361, 176
Kaesberg, P., Dasgupta, R., Sgro, J.-Y., Wery, J.-P., Selling, B.H., Hosur,
M.V., Johnson, J.E. (1990). Structural Homology Among Four Nodaviruses as
Deduced by Sequencing and X-Ray Crystallography. J.Mol.Biol., 214, 423
Hosur, M.V., Schmidt, T., Tucker, R.C., Johnson, J.E., Gallagher, T.M.,
Selling, B.H., Rueckert, R.R. (1987). Structure of an Insect Virus at 3.0
Angstroms Resolution. Proteins, 2, 167
Non-standard residue | CA — calcium ion
Source (natural) | Black beetle virus
Experimental method | X-ray diffraction
Resolution | 2.800Å
> log metadata #1
Metadata for 2bbv #1
---
Title | The refined three-dimensional structure of an insect virus At 2.8
angstroms resolution
Citations | Wery, J.P., Reddy, V.S., Hosur, M.V., Johnson, J.E. (1994). The
refined three-dimensional structure of an insect virus at 2.8 A resolution.
J.Mol.Biol., 235, 565-586. PMID: 8289282. DOI: 10.1006/jmbi.1994.1014
Fisher, A.J., Johnson, J.E. (1993). Ordered Duplex RNA Controls Capsid
Architecture in an Icosahedral Animal Virus. Nature, 361, 176
Kaesberg, P., Dasgupta, R., Sgro, J.-Y., Wery, J.-P., Selling, B.H., Hosur,
M.V., Johnson, J.E. (1990). Structural Homology Among Four Nodaviruses as
Deduced by Sequencing and X-Ray Crystallography. J.Mol.Biol., 214, 423
Hosur, M.V., Schmidt, T., Tucker, R.C., Johnson, J.E., Gallagher, T.M.,
Selling, B.H., Rueckert, R.R. (1987). Structure of an Insect Virus at 3.0
Angstroms Resolution. Proteins, 2, 167
Non-standard residue | CA — calcium ion
Source (natural) | Black beetle virus
Experimental method | X-ray diffraction
Resolution | 2.800Å
> select /A:56-363
2311 atoms, 2372 bonds, 308 residues, 1 model selected
> select /B:56-363
2311 atoms, 2372 bonds, 308 residues, 1 model selected
> select /C:20-363
2406 atoms, 2469 bonds, 1 pseudobond, 321 residues, 2 models selected
> select /D:364-379
125 atoms, 126 bonds, 16 residues, 1 model selected
> select /E:364-379
125 atoms, 126 bonds, 16 residues, 1 model selected
> style /b stick
Changed 2382 atom styles
> select /B:56-363
2311 atoms, 2372 bonds, 308 residues, 1 model selected
> select clear
> select /A:270@CB
1 atom, 1 residue, 1 model selected
> select /B:294@N
1 atom, 1 residue, 1 model selected
> select clear
> select /A:135@CG2
1 atom, 1 residue, 1 model selected
> select /A:135@CD1
1 atom, 1 residue, 1 model selected
> select add /A:129@CD
2 atoms, 2 residues, 1 model selected
> select add /A:108@O
3 atoms, 3 residues, 1 model selected
> select add /A:104@OD1
4 atoms, 4 residues, 1 model selected
> select add /A:377@O
5 atoms, 5 residues, 1 model selected
> select add /A:137@CA
6 atoms, 6 residues, 1 model selected
> select add /A:224@CD2
7 atoms, 7 residues, 1 model selected
> select add /A:135@CG2
8 atoms, 7 residues, 1 model selected
> select add /A:136@N
9 atoms, 8 residues, 1 model selected
> select add /A:136@O
10 atoms, 8 residues, 1 model selected
> select clear
> style /b cartoon
Expected a keyword
> style /b cartoons
Expected a keyword
> style /b stick
Changed 2382 atom styles
> style /b sphere
Changed 2382 atom styles
> style /b ball stick
Expected a keyword
> style /b ball
Changed 2382 atom styles
> select /A:137@CG2
1 atom, 1 residue, 1 model selected
> select /A:135@CD1
1 atom, 1 residue, 1 model selected
> select add /A:129@CG
2 atoms, 2 residues, 1 model selected
> select add /A:132@OG1
3 atoms, 3 residues, 1 model selected
> select add /A:137@CG2
4 atoms, 4 residues, 1 model selected
> select add /A:137@OG1
5 atoms, 4 residues, 1 model selected
> select add /A:136@OG
6 atoms, 5 residues, 1 model selected
> select add /A:136@CB
7 atoms, 5 residues, 1 model selected
> style sel stick
Changed 7 atom styles
> style sel ball
Changed 7 atom styles
> style sel sphere
Changed 7 atom styles
> style sel stick
Changed 7 atom styles
> style sel sphere
Changed 7 atom styles
> select clear
> color /n teal
> color /b red
> hide /c
> show /c
> ribbon /c
> hide /c
> ui windowfill toggle
[Repeated 1 time(s)]
> select /N:4@C5'
1 atom, 1 residue, 1 model selected
> select /N:4
20 atoms, 21 bonds, 1 residue, 1 model selected
> select /N:
Expected an objects specifier or a keyword
> select /N:3
20 atoms, 21 bonds, 1 residue, 1 model selected
> select /N:1
17 atoms, 18 bonds, 1 residue, 1 model selected
> select /N:1@C4'
1 atom, 1 residue, 1 model selected
> style sel stick
Changed 1 atom style
> sytle /n stick
Unknown command: sytle /n stick
> sytle /N stick
Unknown command: sytle /N stick
> sTYle /N stick
Unknown command: sTYle /N stick
> style /n stick
Changed 201 atom styles
> style /n sphere
Changed 201 atom styles
> style /n stick
Changed 201 atom styles
> style /n sphere
Changed 201 atom styles
> select up
17 atoms, 18 bonds, 1 residue, 1 model selected
> solor sel gold
Unknown command: solor sel gold
> color sel gold
> select clear
> undo
[Repeated 1 time(s)]
> redo
[Repeated 1 time(s)]
> surface #1
> surface #2
No atoms specified by #2
> surface #1
> surface #1 color /n fromatoms
Invalid "color" argument: Invalid color name or specifier
> color /n fromatoms
> lighting simple
> undo
[Repeated 9 time(s)]
> color /n fromatoms
[Repeated 1 time(s)]
> style solvent sphere
Changed 208 atom styles
> color solvent red
[Repeated 1 time(s)]
> color solvent gold
> sym #1
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly| 60 copies of chains A-F,N
2| icosahedral asymmetric unit| 1 copy of chains A-F,N
3| icosahedral pentamer| 5 copies of chains A-F,N
4| icosahedral 23 hexamer| 6 copies of chains A-F,N
5| icosahedral asymmetric unit, std point frame| 1 copy of chains A-F,N
6| crystal asymmetric unit, crystal frame| 5 copies of chains A-F,N
> sym #1 assembly 3
[Repeated 1 time(s)]
> newmodel false copies false
Unknown command: newmodel false copies false
> newmodel false copies
Unknown command: newmodel false copies
> newmodel false copies
Unknown command: newmodel false copies
> view
> set bgColor white
> set silhouettes true
> save C:\Users\lijia/Desktop/2bbv.png
> movie record
> turn y 2 180
> wait 180
> movie encode C:\Users\lijia\Desktop\movie1.mp4
Movie saved to \C:Users\\...\Desktop\movie1.mp4
> measure buriedarea /a withAtoms2 /b
Buried area between /a and /b = 14796
area /a = 65737, area /b = 74944, area both = 1.1109e+05
> interfaces #1 & protein
6 buried areas: C A 1675, C B 1671, A B 1663, C F 739, A D 714, B E 699
> close
> set bgColor black
> set silhouettes false
> remove 6z6b
Unknown command: remove 6z6b
> open 6z6b format mmcif fromDatabase pdb
6z6b title:
Structure of full-length La Crosse virus L protein (polymerase) [more info...]
Chain information for 6z6b #1
---
Chain | Description | UniProt
BBB UUU | RNA (5'-R(P*ap*GP*up*ap*GP*up*GP*up*GP*C)-3') |
CCC HHH | RNA (5'-R(P*up*up*ap*GP*up*ap*GP*up*ap*CP*ap*CP*up*ap*CP*U)-3') |
DDD XXX | RNA (5'-R(*GP*CP*up*ap*CP*up*ap*A)-3') |
EEE PPP | RNA-directed RNA polymerase L | L_BUNLC
Non-standard residues in 6z6b #1
---
ZN — zinc ion
6z6b mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> close
> open 6z6b format mmcif fromDatabase pdb
6z6b title:
Structure of full-length La Crosse virus L protein (polymerase) [more info...]
Chain information for 6z6b #1
---
Chain | Description | UniProt
BBB UUU | RNA (5'-R(P*ap*GP*up*ap*GP*up*GP*up*GP*C)-3') |
CCC HHH | RNA (5'-R(P*up*up*ap*GP*up*ap*GP*up*ap*CP*ap*CP*up*ap*CP*U)-3') |
DDD XXX | RNA (5'-R(*GP*CP*up*ap*CP*up*ap*A)-3') |
EEE PPP | RNA-directed RNA polymerase L | L_BUNLC
Non-standard residues in 6z6b #1
---
ZN — zinc ion
6z6b mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> close session
> ui tool show "Selection Inspector"
> show cartoons
[Repeated 1 time(s)]
> hide cartoons
> ui mousemode right rotate
> ui mousemode right select
> ui mousemode right rotate
> open 2bbv format mmcif fromDatabase pdb
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #1
---
Chain | Description | UniProt
A B C | protein (black beetle virus capsid protein) | COAT_BBV
D E F | protein (black beetle virus capsid protein) | COAT_BBV
N | RNA (5'-R(*up*CP*up*up*ap*up*ap*up*CP*U)-3') |
Non-standard residues in 2bbv #1
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> ui mousemode right select
> select /A:382@O
1 atom, 1 residue, 1 model selected
> select /A:129@CG
1 atom, 1 residue, 1 model selected
> ui mousemode right rotate
Drag select of 10 atoms
Drag select of 864 atoms, 3 pseudobonds
> select /A:277@ND2
1 atom, 1 residue, 1 model selected
> select /C:204@O
1 atom, 1 residue, 1 model selected
> select /B:207@CG2
1 atom, 1 residue, 1 model selected
Drag select of 10 atoms
> ui mousemode right select
> select /B:339@SG
1 atom, 1 residue, 1 model selected
Drag select of 34 atoms
Drag select of 155 atoms
Drag select of 94 atoms
> select clear
> select /A:249@CB
1 atom, 1 residue, 1 model selected
> select /F:378@CD2
1 atom, 1 residue, 1 model selected
> select /A:338@O
1 atom, 1 residue, 1 model selected
> select /A:68@NZ
1 atom, 1 residue, 1 model selected
> select /A:82@NZ
1 atom, 1 residue, 1 model selected
> select /A:60@CB
1 atom, 1 residue, 1 model selected
> select clear
> select /B:341@CG
1 atom, 1 residue, 1 model selected
> select /F:371@C
1 atom, 1 residue, 1 model selected
> select /F:375@NZ
1 atom, 1 residue, 1 model selected
> select /A:337@CB
1 atom, 1 residue, 1 model selected
> select /A:68@CB
1 atom, 1 residue, 1 model selected
> ui mousemode right rotate
> ui mousemode right translate
> ui mousemode right zoom
[Repeated 1 time(s)]
> ui mousemode right "translate selected models"
> view matrix models #1,1,0,0,-10.966,0,1,0,5.3233,0,0,1,-35.267
> view matrix models #1,1,0,0,16.315,0,1,0,-7.4724,0,0,1,16.707
> view matrix models #1,1,0,0,-2.5146,0,1,0,1.1531,0,0,1,-2.689
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.11849,0.367,-0.92264,105.34,0.34257,0.85703,0.38489,-44.201,0.93199,-0.36168,-0.024175,144.55
> ui mousemode right "move picked models"
> view matrix models
> #1,0.11849,0.367,-0.92264,92.695,0.34257,0.85703,0.38489,-37.872,0.93199,-0.36168,-0.024175,88.541
> ui mousemode right "translate selected atoms"
> ui mousemode right pivot
> ui mousemode right distance
> distance /B:182@CE /B:181@CG
Distance between /B MET 182 CE and LEU 181 CG: 9.579Å
> style sel stick
Changed 1 atom style
> style /b stick
Changed 2382 atom styles
> ui mousemode right distance
[Repeated 3 time(s)]
> distance /B:305@CG2 /B:108@ND2
Distance between /B THR 305 CG2 and ASN 108 ND2: 5.959Å
> ui mousemode right label
> label #1/B:108
> label #1/B:305
> ui mousemode right "move label"
> ui mousemode right "color key"
> ui mousemode right "move label"
> ui mousemode right clip
> ui mousemode right zone
> zone /D:365
> zone label false
> zone /A:75
> zone /A:76
[Repeated 1 time(s)]
> zone /A:77
> zone /A:78
[Repeated 1 time(s)]
> zone /A:95
> zone /A:96
> zone /A:95
> zone /A:96
> zone /A:95
> ui mousemode right "clip rotate"
> ui mousemode right zone
> zone label false
> zone /A:94
> zone /A:96
> zone label false
> zone clear
> zone /A:201
> zone label false
> zone /B:163
> zone /A:278
> zone /A:278 residueDistance 3.83 labelDistance 3.07 surfaceDistance 6.13
> zone /A:278
[Repeated 1 time(s)]
> zone label false
> ui mousemode right "resize markers"
> ui mousemode right "mark maximum"
> ui mousemode right "mark plane"
> select /C:172
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /C:172
8 atoms, 7 bonds, 1 residue, 1 model selected
> ui mousemode right "mark surface"
[Repeated 1 time(s)]
> ui mousemode right "mark center"
> ui mousemode right "mark point"
> ui mousemode right "link markers"
> ui mousemode right "resize markers"
> ui mousemode right "delete markers"
> volume appearance chest
No volumes specified
> color sel bynucleotide
> nucleotides sel stubs
> ui windowfill toggle
[Repeated 1 time(s)]
> select ::name="A"
44 atoms, 48 bonds, 2 residues, 1 model selected
> select /N
201 atoms, 222 bonds, 10 residues, 1 model selected
> color sel bynucleotide
[Repeated 3 time(s)]
> nucleotides sel stubs
> nucleotides sel ladder
> nucleotides sel tube/slab shape muffler
> nucleotides sel tube/slab shape ellipsoid
> nucleotides sel tube/slab shape box
> nucleotides sel slab
> style nucleic & sel stick
Changed 201 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 201 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 201 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 201 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 201 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 201 atom styles
> nucleotides sel ladder
> nucleotides sel tube/slab shape ellipsoid
> color sel bynucleotide
> cartoon sel
> color sel red
> label sel attribute name
> view sel
> ui tool show "Blast Protein"
> ui tool show H-Bonds
> hbonds reveal true
970 hydrogen bonds found
> save C:/Users/lijia/Desktop/1.cxs
> close
> open C:\Users\lijia\Desktop\1.cxs format session
Unable to restore session, resetting.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\session.py", line 725, in restore
obj = sm.restore_snapshot(self, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 245, in restore_snapshot
return BlastProteinTool.from_snapshot(session, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 221, in from_snapshot
tmp = cls(
TypeError: __init__() missing 1 required positional argument: 'str'
opened ChimeraX session
> open C:\Users\lijia\Desktop\1.cxs format session
Unable to restore session, resetting.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\session.py", line 725, in restore
obj = sm.restore_snapshot(self, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 245, in restore_snapshot
return BlastProteinTool.from_snapshot(session, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 221, in from_snapshot
tmp = cls(
TypeError: __init__() missing 1 required positional argument: 'str'
opened ChimeraX session
> open C:\Users\lijia\Desktop\1.cxs format session
Unable to restore session, resetting.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\session.py", line 725, in restore
obj = sm.restore_snapshot(self, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 245, in restore_snapshot
return BlastProteinTool.from_snapshot(session, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 221, in from_snapshot
tmp = cls(
TypeError: __init__() missing 1 required positional argument: 'str'
opened ChimeraX session
> open C:\Users\lijia\Desktop\1.cxs format session
Unable to restore session, resetting.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\core\session.py", line 725, in restore
obj = sm.restore_snapshot(self, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 245, in restore_snapshot
return BlastProteinTool.from_snapshot(session, data)
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-
packages\chimerax\blastprotein\ui\tool.py", line 221, in from_snapshot
tmp = cls(
TypeError: __init__() missing 1 required positional argument: 'str'
opened ChimeraX session
OpenGL version: 3.3.0 NVIDIA 457.49
OpenGL renderer: GeForce 940MX/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: LENOVO
Model: 20FWA00QCD
OS: Microsoft Windows 10 专业版 (Build 19042)
Memory: 8,400,510,976
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-6300HQ CPU @ 2.30GHz
OSLanguage: zh-CN
Locale: ('zh_CN', 'cp936')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Should be fixed by this commit. The blastprotein tool used to require a tool name on initialization which would be passed down to results windows. Now the results windows manage their own names, so this vestigial code is no longer required. Bug went unnoticed for ~3 months. May require uploading a new version of Blastprotein to the toolshed.