Opened 4 years ago

Closed 4 years ago

#5923 closed defect (can't reproduce)

Crash in Clashes GUI generating command

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Structure Analysis Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_commaWindows fatal exception: ncode 0xd8001010e\

dialWindows fatal exception: ocode 0xg8001010e.

pWindows fatal exception: ycode 0x"8001010e, line 

135Windows fatal exception:  in scode 0xh8001010eo

wWindows fatal exception: _code 0xo8001010ep

eWindows fatal exception: ncode 0x_8001010ef

ile_dialog
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in Windows fatal exception: 
code 0x  File 8001010e"

C:\PrWindows fatal exception: ocode 0xg8001010er

[a tremendous amount of this stuff deleted]

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_comWindows fatal exception: mcode 0xa8001010en

d
  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

amWindows fatal exception:  code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\CWindows fatal exception: hcode 0xi8001010em

eraX_Windows fatal exception: mcode 0xa8001010ei

n.pWindows fatal exception: ycode 0x"8001010e, line 

866 in Windows fatal exception: icode 0xn8001010ei

t
Windows fatal exception:   File code 0x"8001010eC

:\Windows fatal exception: Pcode 0xr8001010eo

gram Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimWindows fatal exception: ecode 0xr8001010ea

X 1.Windows fatal exception: 2code 0x.8001010e5

\biWindows fatal exception: ncode 0x\8001010el

ib\Windows fatal exception: scode 0xi8001010et

e-pWindows fatal exception: acode 0xc8001010ek

ageWindows fatal exception: scode 0x\8001010ec

himerax\ui\gui.py", line 293 in eventWindows fatal exception: _code 0xl8001010eo

op
  File "Windows fatal exception: Ccode 0x:8001010e\

ProgWindows fatal exception: rcode 0xa8001010em

 FiWindows fatal exception: lcode 0xe8001010es

\ChWindows fatal exception: iWindows fatal exception: mcode 0xe8001010er

code 0xa8001010eWindows fatal exception: 

code 0xX8001010e Windows fatal exception: 

1code 0x.Windows fatal exception: 28001010ecode 0x

.8001010e5

\biWindows fatal exception: ncode 0x\8001010el

ibWindows fatal exception: \code 0xs8001010ei

teWindows fatal exception: -code 0xp8001010ea

ckages\ChimeraX_main.py", line 866 in init
  File "C:\Program FilesWindows fatal exception: \code 0xC8001010eh

imeraWindows fatal exception: Xcode 0x 8001010e1

.2.Windows fatal exception: 5code 0x\8001010eb

in\Windows fatal exception: lcode 0xWindows fatal exception: icode 0xb8001010e\

8001010es

iWindows fatal exception: tWindows fatal exception: code 0xecode 0x-8001010e8001010ep



aWindows fatal exception: ccode 0xWindows fatal exception: k8001010eacode 0x

8001010eg

Windows fatal exception: ecode 0xs8001010e\

ChiWindows fatal exception: mcode 0xe8001010er

aX_Windows fatal exception: mcode 0xa8001010ei

n.py", line 1015 in 
  File "Windows fatal exception: Ccode 0x:8001010e\

ProWindows fatal exception: gcode 0xr8001010ea

m FWindows fatal exception: icode 0xl8001010ee

s\CWindows fatal exception: hcode 0xi8001010em

eraWindows fatal exception: Xcode 0x 8001010e1

.2.5\bin\lib\runpy.py", line Windows fatal exception: 87code 0x in 8001010e_

run_Windows fatal exception: ccode 0xo8001010ed

e
  File Windows fatal exception: "code 0xC8001010e:

\PrWindows fatal exception: ocode 0xg8001010er

am Windows fatal exception: Fcode 0xi8001010el

es\CWindows fatal exception: hcode 0xi8001010em

eraX 1.2.5\bin\lib\runpy.py", line 194 in _run_modWindows fatal exception: ucode 0xl8001010ee

_as_Windows fatal exception: mcode 0xa8001010ei

n
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.pWindows fatal exception: ycode 0x"8001010e, line 

432 in gWindows fatal exception: ecode 0xt8001010e_

comWindows fatal exception: mcode 0xa8001010en

d
  File Windows fatal exception: "code 0xC8001010e:

\PrWindows fatal exception: ocode 0xg8001010er

amWindows fatal exception:  code 0xF8001010eil

es\ChimeraX 1.2.5\bin\libWindows fatal exception: \code 0xs8001010ei

teWindows fatal exception: -code 0xp8001010ea

ckWindows fatal exception: acode 0xg8001010ee

s\Windows fatal exception: ccode 0xh8001010ei

merWindows fatal exception: acode 0xx8001010e\

claWindows fatal exception: scode 0xh8001010ee

s\tool.py", line 58 in run_command
  File Windows fatal exception: "code 0xC8001010e:

\ProWindows fatal exception: gcode 0xr8001010ea

m FWindows fatal exception: icode 0xl8001010ee

s\CWindows fatal exception: hcode 0xi8001010em

eraWindows fatal exception: Xcode 0x 8001010e1

.2.Windows fatal exception: 5code 0x\Windows fatal exception: 8001010ecode 0x

b8001010ei

n\lWindows fatal exception: icode 0xb8001010e\

sitWindows fatal exception: ecode 0x-8001010ep

ackWindows fatal exception: acode 0xg8001010ee

s\cWindows fatal exception: hcode 0xi8001010em

erWindows fatal exception: acode 0xx8001010e\

ui\gui.py", line 293 in event_loop
  File "C:\ProgrWindows fatal exception: acode 0xm8001010e 

FiWindows fatal exception: lcode 0xe8001010es

\CWindows fatal exception: hcode 0xi8001010em

eraWindows fatal exception: Xcode 0x 8001010e1

.2.5Windows fatal exception: \code 0xb8001010ein

\libWindows fatal exception: \code 0xs8001010ei

te-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\CWindows fatal exception: hcode 0xi8001010em

eraX 1Windows fatal exception: .code 0x28001010e.

5\biWindows fatal exception: ncode 0x\8001010el

ib\Windows fatal exception: scode 0xi8001010et

e-paWindows fatal exception: ccode 0xk8001010ea

gesWindows fatal exception: \code 0xWindows fatal exception: 8001010ecode 0x

8001010eC

himeWindows fatal exception: rcode 0xa8001010eX

_maWindows fatal exception: icode 0xn8001010e.

py"Windows fatal exception: , line code 0x10158001010e in 


Windows fatal exception:   File code 0x"8001010eC

:\Program Windows fatal exception: Fcode 0xi8001010el

es\ChWindows fatal exception: icode 0xm8001010ee

raX Windows fatal exception: 1code 0x.8001010e2

.5\bWindows fatal exception: icode 0xn8001010e\

libWindows fatal exception: \code 0xr8001010eu

npyWindows fatal exception: .code 0xp8001010ey

", line 87 in _run_code
  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

amWindows fatal exception:  code 0xF8001010ei

lesWindows fatal exception: \code 0xC8001010eh

imeWindows fatal exception: rcode 0xa8001010eX

 1.Windows fatal exception: 2code 0x.8001010e5

\bin\lib\runpy.py", line 194 in _run_module_as_maiWindows fatal exception: ncode 0x
8001010e

Thread 0x00003df4 (most recent call first):
Windows fatal exception:   File code 0x"8001010eC

:\PWindows fatal exception: rcode 0xo8001010eg

ramWindows fatal exception:  code 0xWindows fatal exception: Fcode 0xi8001010el8001010ee

s

\Windows fatal exception: Ccode 0xh8001010ei

merWindows fatal exception: acode 0xX8001010e 

1.Windows fatal exception: 2code 0x.8001010e5

\bWindows fatal exception: icode 0xn8001010e\

libWindows fatal exception: \code 0xs8001010ei

te-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimerWindows fatal exception: acode 0xX8001010e 

1.2.5Windows fatal exception: \code 0xb8001010ei

n\lWindows fatal exception: icode 0xb8001010e\

sWindows fatal exception: icode 0xt8001010ee

-paWindows fatal exception: ccode 0xk8001010eWindows fatal exception: 

code 0xa8001010eWindows fatal exception: gcode 0xe8001010e



s\Windows fatal exception: ccode 0x8001010eh

imeWindows fatal exception: rcode 0xa8001010ex

\clWindows fatal exception: acode 0xs8001010eh

es\Windows fatal exception: tcode 0xo8001010eo

l.pWindows fatal exception: ycode 0x"8001010e, line 

58 in run_command
  File "C:\Program Files\ChimeraX 1.2.Windows fatal exception: 5code 0x\8001010eb

in\Windows fatal exception: lcode 0xi8001010eb

\siWindows fatal exception: tcode 0xe8001010e-

paWindows fatal exception: ccode 0xk8001010ea

gesWindows fatal exception: \code 0xc8001010eh

imeWindows fatal exception: rcode 0xa8001010ex

\ui\gui.py", line 293 in event_loop
  File "C:\ProgrWindows fatal exception: acode 0xm8001010e 

FileWindows fatal exception: scode 0x\8001010eC

himWindows fatal exception: ecode 0xr8001010ea

X 1Windows fatal exception: .code 0x28001010e.

5\bWindows fatal exception: icode 0xn8001010e\

libWindows fatal exception: \code 0xs8001010ei

te-packages\ChimeraX_main.py", line 866 in init
  File "CWindows fatal exception: :code 0x\8001010eP

rograWindows fatal exception: mcode 0x 8001010eF

ilesWindows fatal exception: \code 0xC8001010eh

imeWindows fatal exception: rcode 0xa8001010eX

 1.Windows fatal exception: 2code 0x.8001010e5

\Windows fatal exception: bcode 0xi8001010en

\lib\site-packagWindows fatal exception: ecode 0xs8001010e\

ChimWindows fatal exception: ecode 0xr8001010ea

X_mWindows fatal exception: acode 0xi8001010en

.pyWindows fatal exception: "code 0x, line 8001010e1015

 in code 0x
8001010e  File 

"C:\PrograWindows fatal exception: mcode 0x 8001010eF

ilesWindows fatal exception: \code 0xC8001010eh

imeWindows fatal exception: rcode 0xa8001010eX

 1.Windows fatal exception: 2code 0x.8001010e5

\biWindows fatal exception: ncode 0x\8001010el

ib\Windows fatal exception: rcode 0xu8001010en

py.py", line 87 in _run_code
  File "C:\Program Files\ChimerWindows fatal exception: acode 0xX8001010e 

1.2.Windows fatal exception: 5code 0x\8001010eb

in\Windows fatal exception: lcode 0xi8001010eb

\ruWindows fatal exception: ncode 0xp8001010ey

.pyWindows fatal exception: "code 0x, line 8001010e194

 in _rWindows fatal exception: ucode 0xn8001010e_

module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\ProgWindows fatal exception: rcode 0xa8001010em

 FilWindows fatal exception: ecode 0xs8001010e\

ChimWindows fatal exception: ecode 0xr8001010ea

X 1Windows fatal exception: Windows fatal exception: .code 0x28001010e.code 0x58001010e

\

bWindows fatal exception: icode 0xWindows fatal exception: 8001010ecode 0x

8001010e

nWindows fatal exception: \code 0xl8001010eWindows fatal exception: 

code 0xi8001010eb

\sWindows fatal exception: icode 0xt8001010ee

-pWindows fatal exception: acode 0xc8001010ek

agWindows fatal exception: ecode 0xs8001010e\

chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00003df4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\gui.py", line 432 in get_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in 
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main


Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 30.0.100.9955
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Manufacturer: Dell Inc.
Model: Latitude 7320
OS: Microsoft Windows 10 Pro (Build 19044)
Memory: 16,892,956,672
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i7-1185G7 @ 3.00GHz
OSLanguage: en-US
Locale: ('en_GB', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 4 years ago

Component: Unassigned → Structure Analysis
Description: modified (diff)
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Crash in Clashes GUI generating command

comment:2 by Eric Pettersen, 4 years ago

Resolution: → can't reproduce
Status: accepted → closed
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