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#5944 closed defect (can't reproduce)

Crash updating clip caps

Reported by:	chimerax-bug-report@…	Owned by:	Tom Goddard
Priority:	normal	Milestone:
Component:	Graphics	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19042
ChimeraX Version: 1.3.dev202110261153 (2021-10-26 11:53:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: code 0x8001010e

, line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bWindows fatal exception: in\lib\site-packages\ChimeraX_main.pcode 0xy", line 1018 in 8001010e


  File Windows fatal exception: "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py"code 0x, line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
8001010e

Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:Windows fatal exception: code 0x8001010e

\Program Files\ChimeWindows fatal exception: raX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_ccode 0xommand\dialo8001010eg.py", line 135 in show_open_

file_dialog
  File "C:\Program Files\ChimWindows fatal exception: eraX 1.3.dev202110261153\bin\lib\site-packages\chimeraxcode 0x\open_command\dialog.py", line 107 in 
8001010e  File "C:\Program Files\ChimeraX 1.3

.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
Windows fatal exception:   File "C:\code 0x8001010e

ProWindows fatal exception: code 0x8001010e

gram Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: code 0x8001010e

, line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: , line 316 in code 0x8001010e

event_loop
Windows fatal exception: code 0x8001010e

  File Windows fatal exception: code 0x8001010e

"C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: , line 867 in inicode 0xt
8001010e

  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraWindows fatal exception: X_main.py"code 0x, line 1018 in 8001010e


  File Windows fatal exception: code 0x8001010e

"Windows fatal exception: code 0x8001010e

C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py"Windows fatal exception: , line 87 in _run_code
code 0x  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line 135 in show_open_file_dialog
code 0x  File "C:\Program Files\ChimeraX 1.3.de8001010ev20211Windows fatal exception: 0

261153\bin\libWindows fatal exception: code 0x8001010e

code 0xWindows fatal exception: code 0x8001010e

\Windows fatal exception: site-packages\chimerax\open_command\dialog.py"code 0x, line 8001010e107

 in 
Windows fatal exception: code 0x8001010e

8001010eWindows fatal exception: code 0x8001010e

  File Windows fatal exception: code 0x8001010e

"Windows fatal exception: code 0x8001010e

CWindows fatal exception: code 0x8001010e

:Windows fatal exception: code 0x8001010e

\Windows fatal exception: code 0x8001010e

PWindows fatal exception: code 0x8001010e



rogram Files\ChimeraX 1.3.dev202110261153\Windows fatal exception: bin\lib\site-packages\chimerax\ui\gui.py", line 316 in code 0xevent_Windows fatal exception: code 0x8001010e

lWindows fatal exception: code 0x8001010e

8001010eWindows fatal exception: code 0x8001010e

oWindows fatal exception: code 0x8001010e

oWindows fatal exception: code 0x8001010e

pWindows fatal exception: code 0x8001010e


Windows fatal exception: code 0x8001010e

  File Windows fatal exception: code 0x8001010e

"Windows fatal exception: code 0x8001010e

C:\Program Fil

es\ChimWindows fatal exception: code 0x8001010e

eraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in iniWindows fatal exception: t
Windows fatal exception: code 0x  File "C:\Pcode 0xrogram8001010e Files8001010e\ChimeraX 1.3.dev202

1102611Windows fatal exception: code 0x8001010e

53\bin\lib\site-

packageWindows fatal exception: code 0x8001010e

Windows fatal exception: Windows fatal exception: code 0x8001010e

sWindows fatal exception: code 0x8001010e

\CWindows fatal exception: code 0x8001010e

code 0xWindows fatal exception: code 0x8001010e

hWindows fatal exception: code 0x8001010e

imWindows fatal exception: code 0x8001010e

8001010eWindows fatal exception: code 0x8001010e

eraX_main.py"

, line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.deWindows fatal exception: code 0x8001010e

v202110261153\bin\lib\runpy.py"Windows fatal exception: , line 87 in _run_codecode 0x
8001010e

  File "CWindows fatal exception: code 0x8001010e

:\ProgWindows fatal exception: code 0x8001010e

Windows fatal exception: Windows fatal exception: code 0x8001010e

code 0xWindows fatal exception: code 0x8001010e

8001010eWindows fatal exception: 

code 0x8001010e

rWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e



Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

aWindows fatal exception: code 0x8001010e

m FilesWindows fatal exception: code 0x8001010e

Windows fatal exception: Windows fatal exception: code 0x8001010e

\Windows fatal exception: code 0x8001010e

code 0xWindows fatal exception: code 0x8001010e

CWindows fatal exception: code 0x8001010e

8001010eWindows fatal exception: code 0x8001010e



Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e

hWindows fatal exception: code 0x8001010e

imWindows fatal exception: code 0x8001010e



eraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_mainWindows fatal exception: code 0x8001010e


Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0xThread 0x00000910 (most recent call first):
8001010e

  File "C:\PrWindows fatal exception: ogram Files\CWindows fatal exception: code 0x8001010e

code 0x8001010eWindows fatal exception: code 0x8001010e



Windows fatal exception: code 0x8001010e

Windows fatal exception: Windows fatal exception: code 0x8001010e

code 0x8001010e

himeraX 1.3.dWindows fatal exception: ev2021102611code 0x58001010e

3\biWindows fatal exception: code 0x8001010e

Windows fatal exception: Windows fatal exception: code 0x8001010e

nWindows fatal exception: \lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dcode 0xialog
8001010e  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py"

, line 107 in 
Windows fatal exception: Windows fatal exception: code 0x8001010e

code 0xWindows fatal exception: code 0x8001010e

  File Windows fatal exception: code 0x8001010e

8001010eWindows fatal exception: code 0x8001010e

"

C:\PWindows fatal exception: code 0x8001010e

roWindows fatal exception: code 0x8001010e

Windows fatal exception: Windows fatal exception: code 0x8001010e

gWindows fatal exception: code 0x8001010e

rWindows fatal exception: code 0xam code 0x8001010e

Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.Windows fatal exception: py"8001010e, line 316 in 

eventWindows fatal exception: code 0x8001010e

_lWindows fatal exception: code 0x8001010e

ooWindows fatal exception: code 0x8001010e

p
code 0x  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py"8001010e, line 

867 in init
  File "C:\Program Files\ChimWindows fatal exception: eraX 1.3.dev202110261153\bincode 0x\lib\site-packages\ChimeraX_main.py"8001010e, line 1018 in 
  File Windows fatal exception: code 0x8001010e

"C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py"Windows fatal exception: , line 87 in _runcode 0x_code
  File "C:\Program Files\C8001010ehimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main


Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraWindows fatal exception: code 0x8001010e

X 1.3.dev202110261153\bin\lib\site-packages\chiWindows fatal exception: code 0x8001010e

merax\open_command\dialog.py"Windows fatal exception: , line 135 in show_open_file_dialog
code 0x  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py"8001010e, line 107 in 


  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\uiWindows fatal exception: code 0x\8001010e

gui.py", line 316 in Windows fatal exception: code 0x8001010e

event_loop
Windows fatal exception:   File "C:\Prcode 0xogram Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\Chi8001010emeraX_main.py"

, line 867 in init
Windows fatal exception: code 0x8001010e

  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\surface\cap.py", line 28 in update_clip_caps
Windows fatal exception: access violation

===== Log before crash start =====
UCSF ChimeraX version: 1.3.dev202110261153 (2021-10-26)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:/Users/martinl/Desktop/NKG2A/membrane/NKG2A-CD_FULL_MEMBRANE_SYSTEM/membrane150_CONFORMATION2/6_proteins_alignedtomembrane.pdb

Chain information for 6_proteins_alignedtomembrane.pdb  
---  
Chain | Description  
1.2/J | No description available  
1.2/K | No description available  
  

> select #1.1

124992 atoms, 95112 bonds, 29088 residues, 1 model selected  

> hide #1.1 models

> ~select #1.1

Nothing selected  

> show #1.1 models

> hide #1.2 models

> show #1.2 models

> hide #1.1 models

> show #1.1 models

> hide #1.1 models

> show #1.1 models

> hide #1.1 models

> show #1.1 models

> select #1.1

124992 atoms, 95112 bonds, 29088 residues, 1 model selected  

> ~select #1.1

Nothing selected  

> select #1.2

2769 atoms, 2832 bonds, 348 residues, 1 model selected  

> select sel : delete atoms sel

> delete bonds sel

> save
> C:/Users/martinl/Desktop/NKG2A/membrane/NKG2A-CD_FULL_MEMBRANE_SYSTEM/membrane150_CONFORMATION2/6_membrane_hole_0.6A.pdb

> hide #1.1 models

> show #1.1 models


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3.dev202110261153 (2021-10-26)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:\\\Users\\\martinl\\\Desktop\\\NKG2A\\\membrane\\\NKG2A-CD_FULL_MEMBRANE_SYSTEM\\\membrane150_CONFORMATION2\\\6_proteins_alignedtomembrane.pdb

Chain information for 6_proteins_alignedtomembrane.pdb  
---  
Chain | Description  
1.2/J | No description available  
1.2/K | No description available  
  




OpenGL version: 3.3.14761 Core Profile Forward-Compatible Context 21.30.14 30.0.13014.8
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.
Manufacturer: LENOVO
Model: 20U8S16U00
OS: Microsoft Windows 10 Pro (Build 19042)
Memory: 7,910,981,632
MaxProcessMemory: 137,438,953,344
CPU: 6 AMD Ryzen 5 4500U with Radeon Graphics         
OSLanguage: en-US
Locale: ('sl_SI', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1
    charset-normalizer: 2.0.7
    ChimeraX-AddCharge: 1.1.4
    ChimeraX-AddH: 2.1.10
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.1.6
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3.dev202110261153
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.3
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.4
    ChimeraX-ModelPanel: 1.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.8
    ChimeraX-PDB: 2.6.4
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.5
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.6
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.10.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.5.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.2.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.8.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.0
    ParmEd: 3.2.0
    parso: 0.8.2
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.21
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.1
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.2
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 4 years ago

Component:	Unassigned → Graphics
Owner:	set to Tom Goddard
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Crash updating clip caps

comment:2 by Tom Goddard, 4 years ago

Resolution:	→ can't reproduce
Status:	assigned → closed

Hid and showed model in a multimodel PDB file.

> hide #1.1 models
> show #1.1 models

Was checking or recomputing clip caps

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110261153\bin\lib\site-packages\chimerax\surface\cap.py", line 28 in update_clip_caps
Windows fatal exception: access violation

The code in update_clip_caps() is all Python. Some C++ could have been called to compute a clip cap, but unlikely since the log does not indicate any clipping was done. Maybe it crashed in garbage collection.

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