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#5955 closed defect (can't reproduce)
Crash removing dock widget from main window during AlphaFold prediction
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Eric Pettersen | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3rc202111110135 (2021-11-11 01:35:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00007000174e3000 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000164e0000 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000154dd000 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000144da000 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000134d7000 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000124d4000 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000114d1000 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x0000000105869e00 (most recent call first):
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2285 in destroy
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2156 in _destroy
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 787 in remove_tool
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 353 in remove_tool
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/tools.py", line 154 in delete
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 654 in close_request
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2251 in
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [56965]
Path: /Volumes/VOLUME/*/ChimeraX-1.3-rc2021.11.11.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [56965]
User ID: 501
Date/Time: 2022-01-18 22:47:10.783 -0500
OS Version: macOS 11.6 (20G165)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: 7335E145-4B6B-EC59-C01C-8833B54B3601
Sleep/Wake UUID: A1145924-4432-4117-A655-9F31772E7F69
Time Awake Since Boot: 91000 seconds
Time Since Wake: 14000 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
Calling windowShouldClose: on the delegate for the QNSPanel 0x7fcadf236a10
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2048f92e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff204be5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff203a2bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20503d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWidgets 0x000000010dc98741 QMainWindow::removeDockWidget(QDockWidget*) + 33
6 QtWidgets.abi3.so 0x000000010d77229f meth_QMainWindow_removeDockWidget(_object*, _object*) + 95
7 org.python.python 0x000000010146e06d cfunction_call + 125
8 org.python.python 0x000000010142f17d _PyObject_MakeTpCall + 365
9 org.python.python 0x000000010150761c call_function + 876
10 org.python.python 0x0000000101504ab3 _PyEval_EvalFrameDefault + 25219
11 org.python.python 0x000000010142f948 function_code_fastcall + 104
12 org.python.python 0x000000010150758c call_function + 732
13 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
14 org.python.python 0x000000010142f948 function_code_fastcall + 104
15 org.python.python 0x000000010150758c call_function + 732
16 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
17 org.python.python 0x000000010142f948 function_code_fastcall + 104
18 org.python.python 0x000000010143198a method_vectorcall + 202
19 org.python.python 0x000000010150758c call_function + 732
20 org.python.python 0x0000000101504ab3 _PyEval_EvalFrameDefault + 25219
21 org.python.python 0x000000010142f948 function_code_fastcall + 104
22 org.python.python 0x000000010143198a method_vectorcall + 202
23 org.python.python 0x000000010150758c call_function + 732
24 org.python.python 0x0000000101504ab3 _PyEval_EvalFrameDefault + 25219
25 org.python.python 0x000000010142f948 function_code_fastcall + 104
26 org.python.python 0x000000010150758c call_function + 732
27 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
28 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
29 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
30 org.python.python 0x000000010143198a method_vectorcall + 202
31 org.python.python 0x000000010150758c call_function + 732
32 org.python.python 0x0000000101504ab3 _PyEval_EvalFrameDefault + 25219
33 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
34 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
35 sip.cpython-39-darwin.so 0x0000000105256a47 sip_api_call_procedure_method + 199
36 QtWidgets.abi3.so 0x000000010d6c1688 sipQDockWidget::closeEvent(QCloseEvent*) + 104
37 QtWidgets 0x000000010db850f9 QWidget::event(QEvent*) + 1209
38 QtWidgets 0x000000010dc63d27 QDockWidget::event(QEvent*) + 791
39 QtWidgets.abi3.so 0x000000010d6c067f sipQDockWidget::event(QEvent*) + 191
40 QtWidgets 0x000000010db4a9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
41 QtWidgets 0x000000010db4be11 QApplication::notify(QObject*, QEvent*) + 497
42 QtWidgets.abi3.so 0x000000010d6fddb9 sipQApplication::notify(QObject*, QEvent*) + 233
43 QtCore 0x0000000104d33a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
44 QtWidgets 0x000000010db73fd5 QWidgetPrivate::close_helper(QWidgetPrivate::CloseMode) + 165
45 QtWidgets 0x000000010dba286d QWidgetWindow::event(QEvent*) + 621
46 QtWidgets 0x000000010db4a9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
47 QtWidgets 0x000000010db4be11 QApplication::notify(QObject*, QEvent*) + 497
48 QtWidgets.abi3.so 0x000000010d6fddb9 sipQApplication::notify(QObject*, QEvent*) + 233
49 QtCore 0x0000000104d33a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
50 QtGui 0x000000010e1b6b9e QGuiApplicationPrivate::processWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 2494
51 QtGui 0x000000010e1978f3 bool QWindowSystemInterfacePrivate::handleWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 115
52 libqcocoa.dylib 0x000000011b9e974e QCocoaWindow::windowShouldClose() + 190
53 libqcocoa.dylib 0x000000011b9fe5c5 -[QNSWindowDelegate windowShouldClose:] + 69
54 com.apple.AppKit 0x00007fff2314e7c9 __19-[NSWindow __close]_block_invoke + 153
55 com.apple.AppKit 0x00007fff2314e723 -[NSWindow __close] + 284
56 com.apple.AppKit 0x00007fff22fde2bb -[NSApplication(NSResponder) sendAction:to:from:] + 288
57 com.apple.AppKit 0x00007fff22fde15f -[NSControl sendAction:to:] + 86
58 com.apple.AppKit 0x00007fff22fde091 __26-[NSCell _sendActionFrom:]_block_invoke + 131
59 com.apple.AppKit 0x00007fff22fddf98 -[NSCell _sendActionFrom:] + 171
60 com.apple.AppKit 0x00007fff22fddede -[NSButtonCell _sendActionFrom:] + 96
61 com.apple.AppKit 0x00007fff22fdafc7 NSControlTrackMouse + 1820
62 com.apple.AppKit 0x00007fff22fda883 -[NSCell trackMouse:inRect:ofView:untilMouseUp:] + 130
63 com.apple.AppKit 0x00007fff22fda74a -[NSButtonCell trackMouse:inRect:ofView:untilMouseUp:] + 697
64 com.apple.AppKit 0x00007fff22fd9a72 -[NSControl mouseDown:] + 722
65 com.apple.AppKit 0x00007fff22fd7e5e -[NSWindow(NSEventRouting) _handleMouseDownEvent:isDelayedEvent:] + 4961
66 com.apple.AppKit 0x00007fff22f47648 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 2594
67 com.apple.AppKit 0x00007fff22f46a06 -[NSWindow(NSEventRouting) sendEvent:] + 347
68 libqcocoa.dylib 0x000000011b9fddf5 -[QNSPanel sendEvent:] + 549
69 com.apple.AppKit 0x00007fff22f44e14 -[NSApplication(NSEvent) sendEvent:] + 352
70 libqcocoa.dylib 0x000000011ba0412a -[QNSApplication sendEvent:] + 74
71 com.apple.AppKit 0x00007fff2321dbe1 -[NSApplication _handleEvent:] + 65
72 com.apple.AppKit 0x00007fff22dadc8e -[NSApplication run] + 623
73 libqcocoa.dylib 0x000000011ba0062f QCocoaEventDispatcher::processEvents(QFlags) + 2495
74 QtCore 0x0000000104d2facf QEventLoop::exec(QFlags) + 431
75 QtCore 0x0000000104d34042 QCoreApplication::exec() + 130
76 QtWidgets.abi3.so 0x000000010d7ef702 meth_QApplication_exec_(_object*, _object*) + 82
77 org.python.python 0x000000010146e06d cfunction_call + 125
78 org.python.python 0x000000010142f17d _PyObject_MakeTpCall + 365
79 org.python.python 0x000000010150761c call_function + 876
80 org.python.python 0x0000000101504ab3 _PyEval_EvalFrameDefault + 25219
81 org.python.python 0x000000010142f948 function_code_fastcall + 104
82 org.python.python 0x000000010143198a method_vectorcall + 202
83 org.python.python 0x000000010150758c call_function + 732
84 org.python.python 0x0000000101504ab3 _PyEval_EvalFrameDefault + 25219
85 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
86 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
87 org.python.python 0x000000010150758c call_function + 732
88 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
89 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
90 org.python.python 0x00000001014fe70b PyEval_EvalCode + 139
91 org.python.python 0x00000001014fb592 builtin_exec + 626
92 org.python.python 0x000000010146d86a cfunction_vectorcall_FASTCALL + 218
93 org.python.python 0x000000010150758c call_function + 732
94 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
95 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
96 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
97 org.python.python 0x000000010150758c call_function + 732
98 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
99 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
100 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
101 org.python.python 0x000000010156de20 pymain_run_module + 208
102 org.python.python 0x000000010156d537 Py_RunMain + 1431
103 org.python.python 0x000000010156db3f pymain_main + 223
104 org.python.python 0x000000010156da4b Py_Main + 43
105 edu.ucsf.cgl.ChimeraX 0x00000001013e7dc8 main + 120
106 libdyld.dylib 0x00007fff204d9f3d start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff204921d2 kevent64 + 10
1 QtWebEngineCore 0x0000000111345e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000111345cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001112d9a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001112e3778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x00000001112e4150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x00000001112e3c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff204921d2 kevent64 + 10
1 QtWebEngineCore 0x0000000111345e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000111345cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000115212f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112631db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 5:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000111332e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001125ea5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 6:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011126320f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 7:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff204921d2 kevent64 + 10
1 QtWebEngineCore 0x0000000111345e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000111345cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 8:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011126320f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112631db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112631db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112e376a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x00000001112e4150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x00000001112e3d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 12:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112631db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112631db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 14:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff205b649f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff205b4b7f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff205b3f8c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22f4323a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 15:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112e376a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x00000001112e3e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x00000001112e3c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 16:
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010155dc76 PyThread_acquire_lock_timed + 454
3 _queue.cpython-39-darwin.so 0x000000013e3b557e _queue_SimpleQueue_get_impl + 526
4 _queue.cpython-39-darwin.so 0x000000013e3b5126 _queue_SimpleQueue_get + 198
5 org.python.python 0x000000010146d934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
6 org.python.python 0x000000010150758c call_function + 732
7 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
8 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x00000001015051c3 _PyEval_EvalFrameDefault + 27027
11 org.python.python 0x000000010142f948 function_code_fastcall + 104
12 org.python.python 0x000000010150758c call_function + 732
13 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
14 org.python.python 0x000000010142f948 function_code_fastcall + 104
15 org.python.python 0x000000010150758c call_function + 732
16 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
17 org.python.python 0x000000010142f948 function_code_fastcall + 104
18 org.python.python 0x00000001014319d2 method_vectorcall + 274
19 org.python.python 0x00000001015ac3c6 t_bootstrap + 70
20 org.python.python 0x000000010155d8c9 pythread_wrapper + 25
21 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
22 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 17:
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010155dc76 PyThread_acquire_lock_timed + 454
3 _queue.cpython-39-darwin.so 0x000000013e3b557e _queue_SimpleQueue_get_impl + 526
4 _queue.cpython-39-darwin.so 0x000000013e3b5126 _queue_SimpleQueue_get + 198
5 org.python.python 0x000000010146d934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
6 org.python.python 0x000000010150758c call_function + 732
7 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
8 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x00000001015051c3 _PyEval_EvalFrameDefault + 27027
11 org.python.python 0x000000010142f948 function_code_fastcall + 104
12 org.python.python 0x000000010150758c call_function + 732
13 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
14 org.python.python 0x000000010142f948 function_code_fastcall + 104
15 org.python.python 0x000000010150758c call_function + 732
16 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
17 org.python.python 0x000000010142f948 function_code_fastcall + 104
18 org.python.python 0x00000001014319d2 method_vectorcall + 274
19 org.python.python 0x00000001015ac3c6 t_bootstrap + 70
20 org.python.python 0x000000010155d8c9 pythread_wrapper + 25
21 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
22 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 18:
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010155dc76 PyThread_acquire_lock_timed + 454
3 _queue.cpython-39-darwin.so 0x000000013e3b557e _queue_SimpleQueue_get_impl + 526
4 _queue.cpython-39-darwin.so 0x000000013e3b5126 _queue_SimpleQueue_get + 198
5 org.python.python 0x000000010146d934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
6 org.python.python 0x000000010150758c call_function + 732
7 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
8 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x00000001015051c3 _PyEval_EvalFrameDefault + 27027
11 org.python.python 0x000000010142f948 function_code_fastcall + 104
12 org.python.python 0x000000010150758c call_function + 732
13 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
14 org.python.python 0x000000010142f948 function_code_fastcall + 104
15 org.python.python 0x000000010150758c call_function + 732
16 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
17 org.python.python 0x000000010142f948 function_code_fastcall + 104
18 org.python.python 0x00000001014319d2 method_vectorcall + 274
19 org.python.python 0x00000001015ac3c6 t_bootstrap + 70
20 org.python.python 0x000000010155d8c9 pythread_wrapper + 25
21 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
22 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 19:
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010155dc76 PyThread_acquire_lock_timed + 454
3 _queue.cpython-39-darwin.so 0x000000013e3b557e _queue_SimpleQueue_get_impl + 526
4 _queue.cpython-39-darwin.so 0x000000013e3b5126 _queue_SimpleQueue_get + 198
5 org.python.python 0x000000010146d934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
6 org.python.python 0x000000010150758c call_function + 732
7 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
8 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x00000001015051c3 _PyEval_EvalFrameDefault + 27027
11 org.python.python 0x000000010142f948 function_code_fastcall + 104
12 org.python.python 0x000000010150758c call_function + 732
13 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
14 org.python.python 0x000000010142f948 function_code_fastcall + 104
15 org.python.python 0x000000010150758c call_function + 732
16 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
17 org.python.python 0x000000010142f948 function_code_fastcall + 104
18 org.python.python 0x00000001014319d2 method_vectorcall + 274
19 org.python.python 0x00000001015ac3c6 t_bootstrap + 70
20 org.python.python 0x000000010155d8c9 pythread_wrapper + 25
21 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
22 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff2048f9ca poll + 10
1 select.cpython-39-darwin.so 0x0000000103ff0802 select_poll_poll + 482
2 org.python.python 0x000000010143806f method_vectorcall_FASTCALL + 335
3 org.python.python 0x000000010150758c call_function + 732
4 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
5 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
6 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
7 org.python.python 0x000000010150758c call_function + 732
8 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
9 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
10 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
11 org.python.python 0x000000010150758c call_function + 732
12 org.python.python 0x0000000101504be1 _PyEval_EvalFrameDefault + 25521
13 org.python.python 0x0000000101508283 _PyEval_EvalCode + 2611
14 org.python.python 0x000000010142f8d1 _PyFunction_Vectorcall + 289
15 org.python.python 0x000000010150758c call_function + 732
16 org.python.python 0x0000000101504ab3 _PyEval_EvalFrameDefault + 25219
17 org.python.python 0x000000010142f948 function_code_fastcall + 104
18 org.python.python 0x0000000101431a79 method_vectorcall + 441
19 org.python.python 0x00000001015051c3 _PyEval_EvalFrameDefault + 27027
20 org.python.python 0x000000010142f948 function_code_fastcall + 104
21 org.python.python 0x000000010150758c call_function + 732
22 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
23 org.python.python 0x000000010142f948 function_code_fastcall + 104
24 org.python.python 0x000000010150758c call_function + 732
25 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
26 org.python.python 0x000000010142f948 function_code_fastcall + 104
27 org.python.python 0x00000001014319d2 method_vectorcall + 274
28 org.python.python 0x00000001015ac3c6 t_bootstrap + 70
29 org.python.python 0x000000010155d8c9 pythread_wrapper + 25
30 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
31 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010155dc76 PyThread_acquire_lock_timed + 454
3 _queue.cpython-39-darwin.so 0x000000013e3b557e _queue_SimpleQueue_get_impl + 526
4 _queue.cpython-39-darwin.so 0x000000013e3b5126 _queue_SimpleQueue_get + 198
5 org.python.python 0x000000010146d934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
6 org.python.python 0x000000010144bbba calliter_iternext + 74
7 org.python.python 0x00000001015043fb _PyEval_EvalFrameDefault + 23499
8 org.python.python 0x000000010142f948 function_code_fastcall + 104
9 org.python.python 0x00000001015051c3 _PyEval_EvalFrameDefault + 27027
10 org.python.python 0x000000010142f948 function_code_fastcall + 104
11 org.python.python 0x000000010150758c call_function + 732
12 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
13 org.python.python 0x000000010142f948 function_code_fastcall + 104
14 org.python.python 0x000000010150758c call_function + 732
15 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
16 org.python.python 0x000000010142f948 function_code_fastcall + 104
17 org.python.python 0x00000001014319d2 method_vectorcall + 274
18 org.python.python 0x00000001015ac3c6 t_bootstrap + 70
19 org.python.python 0x000000010155d8c9 pythread_wrapper + 25
20 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
21 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 22:
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010155dc76 PyThread_acquire_lock_timed + 454
3 _queue.cpython-39-darwin.so 0x000000013e3b557e _queue_SimpleQueue_get_impl + 526
4 _queue.cpython-39-darwin.so 0x000000013e3b5126 _queue_SimpleQueue_get + 198
5 org.python.python 0x000000010146d934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
6 org.python.python 0x000000010150758c call_function + 732
7 org.python.python 0x0000000101504b4b _PyEval_EvalFrameDefault + 25371
8 org.python.python 0x000000010142f948 function_code_fastcall + 104
9 org.python.python 0x00000001015051c3 _PyEval_EvalFrameDefault + 27027
10 org.python.python 0x000000010142f948 function_code_fastcall + 104
11 org.python.python 0x000000010150758c call_function + 732
12 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
13 org.python.python 0x000000010142f948 function_code_fastcall + 104
14 org.python.python 0x000000010150758c call_function + 732
15 org.python.python 0x0000000101504a92 _PyEval_EvalFrameDefault + 25186
16 org.python.python 0x000000010142f948 function_code_fastcall + 104
17 org.python.python 0x00000001014319d2 method_vectorcall + 274
18 org.python.python 0x00000001015ac3c6 t_bootstrap + 70
19 org.python.python 0x000000010155d8c9 pythread_wrapper + 25
20 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
21 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 23:: CacheThread_BlockFile
0 libsystem_kernel.dylib 0x00007fff204921d2 kevent64 + 10
1 QtWebEngineCore 0x0000000111345e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000111345cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 24:
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x0000000105be2a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 25:: ChromiumEnv.StorageService
0 libsystem_kernel.dylib 0x00007fff2048bcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204bee49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000111332e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001129a8e08 leveldb_env::ChromiumEnv::BGThread() + 264
4 QtWebEngineCore 0x00000001129a8cf9 leveldb_env::ChromiumEnv::BGThreadWrapper(void*) + 9
5 QtWebEngineCore 0x00000001129abb40 leveldb_env::Thread::ThreadMain() + 16
6 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 26:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011133b2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001112631db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001112ce62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001112927cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x00000001112eda7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 27:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001112e3778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x00000001112e4150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x00000001112e3cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 28:
0 libsystem_pthread.dylib 0x00007fff204ba420 start_wqthread + 0
Thread 29:: Dispatch queue: com.apple.root.user-interactive-qos
0 libsystem_kernel.dylib 0x00007fff2048930e semaphore_timedwait_trap + 10
1 libdispatch.dylib 0x00007fff20314d15 _dispatch_sema4_timedwait + 72
2 libdispatch.dylib 0x00007fff20315145 _dispatch_semaphore_wait_slow + 58
3 com.apple.AppKit 0x00007fff236b737a __22-[NSCGSLocalFence set]_block_invoke_2 + 128
4 com.apple.QuartzCore 0x00007fff26d27c86 CA::Transaction::run_commit_handlers(CATransactionPhase) + 92
5 com.apple.QuartzCore 0x00007fff26e90ce5 CA::Context::commit_transaction(CA::Transaction*, double, double*) + 913
6 com.apple.QuartzCore 0x00007fff26d26b6f CA::Transaction::commit() + 713
7 com.apple.AppKit 0x00007fff22e0f765 NSPerformVisuallyAtomicChange + 154
8 com.apple.AppKit 0x00007fff2303f69d __42-[NSAnimation(NSInternal) _runInNewThread]_block_invoke + 80
9 libdispatch.dylib 0x00007fff20313623 _dispatch_call_block_and_release + 12
10 libdispatch.dylib 0x00007fff20314806 _dispatch_client_callout + 8
11 libdispatch.dylib 0x00007fff20323976 _dispatch_root_queue_drain + 676
12 libdispatch.dylib 0x00007fff20323f70 _dispatch_worker_thread2 + 92
13 libsystem_pthread.dylib 0x00007fff204bb417 _pthread_wqthread + 244
14 libsystem_pthread.dylib 0x00007fff204ba42f start_wqthread + 15
Thread 30:
0 libsystem_pthread.dylib 0x00007fff204ba420 start_wqthread + 0
Thread 31:
0 libsystem_pthread.dylib 0x00007fff204ba420 start_wqthread + 0
Thread 32:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204892ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2048962c mach_msg + 60
2 QtWebEngineCore 0x000000011133b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001112e3778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x00000001112e3e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x00000001112e3cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000111336e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204be8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204ba443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000105869e00 rcx: 0x00007fcad7955a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007fcad7955a80 rsp: 0x00007fcad7955a58
r8: 0x00007fcad7955f48 r9: 0x7bcc2480fa9ac73c r10: 0x0000000105869e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007fcad6406860 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2048f92e rfl: 0x0000000000000246 cr2: 0x00000001016587b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
4c 3e ff 41 8d 54 14 ff-48 c1 e2 20 48 09 ca 48 L>.A.T..H.. H..H
83 c4 18 5b 41 5c 41 5d-41 5e 41 5f 5d c3 0f 1f ...[A\A]A^A_]...
84 00 00 00 00 00 55 48-89 e5 41 57 41 56 53 50 ......UH..AWAVSP
49 89 f6 48 89 fb 48 8b-03 45 31 ff 31 f6 eb 0f I..H..H..E1.1...
66 0f 1f 44 00 00 48 8b-03 48 89 df 44 89 fe ff f..D..H..H..D...
90 98 00 00 00 48 85 c0-74 44 48 8b 08 48 89 c7 .....H..tDH..H..
[ff]51 68 4c 39 f0 74 0e-41 ff c7 eb d9 66 0f 1f .QhL9.t.A....f.. /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/MacOS/ChimeraX
0x1013f3000 - 0x101657fff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x1017ba000 - 0x1017bcfff +_heapq.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x1017c4000 - 0x1017c8fff +binascii.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x1017d2000 - 0x1017d7fff +zlib.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x1017e1000 - 0x1017e3fff +_bz2.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x1017ec000 - 0x10181dfff +_lzma.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x10182c000 - 0x10182dfff +grp.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x101836000 - 0x10183bfff +_struct.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x101848000 - 0x101850fff +math.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x10185c000 - 0x10185dfff +_bisect.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x101865000 - 0x101866fff +_random.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x10186f000 - 0x101873fff +_sha512.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x10187c000 - 0x101881fff +_json.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x10188b000 - 0x101c46fff +_multiarray_umath.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x101d7f000 - 0x101e96fff +libgfortran.3.dylib (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x101f04000 - 0x101f3afff +libquadmath.0.dylib (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x101f4e000 - 0x101f63fff +libgcc_s.1.dylib (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x103f73000 - 0x103f82fff +_datetime.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x103f93000 - 0x103faafff +_pickle.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x103fbb000 - 0x103fcafff +_multiarray_tests.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x103fe3000 - 0x103fe5fff +_posixsubprocess.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x103fee000 - 0x103ff2fff +select.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x103ffc000 - 0x10400dfff +_ctypes.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x104024000 - 0x104027fff +lapack_lite.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/lapack_lite.cpython-39-darwin.so
0x104034000 - 0x10404ffff +_umath_linalg.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x104068000 - 0x10407bfff +_pocketfft_internal.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x104087000 - 0x1040fafff +mtrand.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x10415d000 - 0x10417cfff +bit_generator.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x10419f000 - 0x1041d2fff +_common.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x1041f0000 - 0x1041f6fff +_hashlib.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x104204000 - 0x10425cfff +libssl.1.1.dylib (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
0x10428b000 - 0x1044a1fff +libcrypto.1.1.dylib (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libcrypto.1.1.dylib
0x10453f000 - 0x104545fff +_blake2.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so
0x10454f000 - 0x1045a2fff +_bounded_integers.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_bounded_integers.cpython-39-darwin.so
0x1045d2000 - 0x1045e1fff +_mt19937.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_mt19937.cpython-39-darwin.so
0x1045f4000 - 0x104603fff +_philox.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_philox.cpython-39-darwin.so
0x104615000 - 0x104624fff +_pcg64.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_pcg64.cpython-39-darwin.so
0x104638000 - 0x10463ffff +_sfc64.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_sfc64.cpython-39-darwin.so
0x104650000 - 0x1046dbfff +_generator.cpython-39-darwin.so (0) /var/folders/*/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_generator.cpython-39-darwin.so
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0x7fff69746000 - 0x7fff6974afff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bb91000 - 0x7fff6bb97fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bb98000 - 0x7fff6bb9cfff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bb9d000 - 0x7fff6bbacfff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bbad000 - 0x7fff6bbaffff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bbb0000 - 0x7fff6bbb8fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bbb9000 - 0x7fff6bbecfff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bbed000 - 0x7fff6bc29fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bc2a000 - 0x7fff6bdbdfff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bdbe000 - 0x7fff6bdc8fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bdc9000 - 0x7fff6bf46fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bf47000 - 0x7fff6bf6ffff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d208000 - 0x7fff6d260fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e30a000 - 0x7fff6e311fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e312000 - 0x7fff6e3f9fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f97b000 - 0x7fff6f98dfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73c8b000 - 0x7fff73c96fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73eac000 - 0x7fff73ec4fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77a3c000 - 0x7fff77a43fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 3960K 12
CG image 516K 53
CoreAnimation 188K 35
CoreGraphics 16K 3
CoreServices 624K 2
CoreUI image data 5272K 53
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 574.6M 511
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 32K 5
OpenGL GLSL 384K 5
STACK GUARD 128K 32
Stack 275.2M 33
Stack Guard 56.0M 1
VM_ALLOCATE 79.8M 110
__DATA 30.6M 578
__DATA_CONST 24.1M 271
__DATA_DIRTY 1270K 176
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 590.9M 133
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 581.3M 557
__UNICODE 588K 1
mapped file 582.5M 62
shared memory 2968K 25
=========== ======= =======
TOTAL 2.9G 2681
TOTAL, minus reserved VM space 2.8G 2681
===== Log before crash start =====
UCSF ChimeraX version: 1.3rc202111110135 (2021-11-11)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show AlphaFold
> alphafold search
> MGPDRVTARELCENDDLATSLVLDPYLGFRTHKMNVSPVPPLRRQQHLRSALETFLRQRDLEAAYRALTLGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMETNGAKIVSTRAWKKNEKLELLVGCIAELREADEGLLRAGENDFAIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTCERKGEGAFRTRPREPALPPRPLDKYQLRETKRRLQQGLDSGSRQGLLGPRACVHPSPLRRDPFCAACQPLRLPACSARPDTSPLWLQWLPQPQPRVRPRKRRRPRPRRAPVLSTHHAARVSLHRWGGCGPHCRLRGEALVALGQPPHARWAPQQDWHWARRYGLPYVVRVDLRRLAPAPPATPAPAGTPGPILIPKQALAFAPFSPPKRLRLVVSHGSIDLDVGGEEL
> alphafold predict
> MGPDRVTARELCENDDLATSLVLDPYLGFRTHKMNVSPVPPLRRQQHLRSALETFLRQRDLEAAYRALTLGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMETNGAKIVSTRAWKKNEKLELLVGCIAELREADEGLLRAGENDFAIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTCERKGEGAFRTRPREPALPPRPLDKYQLRETKRRLQQGLDSGSRQGLLGPRACVHPSPLRRDPFCAACQPLRLPACSARPDTSPLWLQWLPQPQPRVRPRKRRRPRPRRAPVLSTHHAARVSLHRWGGCGPHCRLRGEALVALGQPPHARWAPQQDWHWARRYGLPYVVRVDLRRLAPAPPATPAPAGTPGPILIPKQALAFAPFSPPKRLRLVVSHGSIDLDVGGEEL
ChimeraX REST job id: job_wx17slu_
BlastProtein finished.
Traceback (most recent call last):
File
"/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/gui.py", line 676, in customEvent
func(*args, **kw)
File
"/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/blastprotein/job.py", line 72, in on_finish
BlastProteinResults.from_job(
File
"/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/blastprotein/ui/results.py", line 83, in from_job
return cls(
File
"/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/blastprotein/ui/results.py", line 79, in __init__
self._build_ui()
File
"/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/blastprotein/ui/results.py", line 197, in _build_ui
param_str = self._format_param_str()
File
"/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/blastprotein/ui/results.py", line 174, in _format_param_str
model_no = int(float(values[0].split('/')[0][1:]))
AttributeError: 'NoneType' object has no attribute 'split'
AttributeError: 'NoneType' object has no attribute 'split'
File
"/private/var/folders/6s/crhmk5fd4qgctk_lvc_bfv400000gn/T/AppTranslocation/D0784587-996A-4293-853B-A7CC10053353/d/ChimeraX-1.3-rc2021.11.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/blastprotein/ui/results.py", line 174, in _format_param_str
model_no = int(float(values[0].split('/')[0][1:]))
See log for complete Python traceback.
Running AlphaFold prediction
Chain information for best_model.pdb #1
---
Chain | Description
A | No description available
AlphaFold prediction finished
Results in /Users/shanu/Downloads/ChimeraX/AlphaFold/prediction_5
> alphafold predict
> MGPDRVTARELCENDDLATSLVLDPYLGFRTHKMNVSPVPPLRRQQHLRSALETFLRQRDLEAAYRALTLGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMETNGAKIVSTRAWKKNEKLELLVGCIAELREADEGLLRAGENNFSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTCERKGEGAFRTRPREPALPPRPLDKYQLRETKRRLQQGLDSGSRQGLLGPRACVHPSPLRRDPFCAACQPLRLPACSARPDTSPLWLQWLPQPQPRVRPRKRRRPRPRRAPVLSTHHAARVSLHRWGGCGPHCRLRGEALVALGQPPHARWAPQQDWHWARRYGLPYVVRVDLRRLAPAPPATPAPAGTPGPILIPKQALAFAPFSPPKRLRLVVSHGSIDLDVGGEEL
Running AlphaFold prediction
Chain information for best_model.pdb #2
---
Chain | Description
A | No description available
AlphaFold prediction finished
Results in /Users/shanu/Downloads/ChimeraX/AlphaFold/prediction_6
> close session
> ui tool show AlphaFold
> alphafold predict
> MGPDRVTARELCENDDLATSLVLDPYLGFWTHKMNVSPVPPLRRQQHLRSALETFLRQRDLEAAYRALTLGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMETNGAKIVSTRAWKKNEKLELLVGCIAELREADEGLLRAGENDFSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTCERKGEGAFRTRPREPALPPRPLDKYQLRETKRRLQQGLDSGSRQGLLGPRACVHPSPLRRDPFCAACQPLRLPACSARPDTSPLWLQWLPQPQPRVRPRKRRRPRPRRAPVLSTHHAARVSLHRWGGCGPHCRLRGEALVALGQPPHARWAPQQDWHWARRYGLPYVVRVDLRRLAPAPPATPAPAGTPGPILIPKQALAFAPFSPPKRLRLVVSHGSIDLDVGGEEL
Running AlphaFold prediction
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202111110135 (2021-11-11)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.2
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 3.1 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 429.140.8.0.0
SMC Version (system): 2.44f6
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 5 days 12:18
Graphics/Displays:
Intel Iris Plus Graphics 650:
Chipset Model: Intel Iris Plus Graphics 650
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5927
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
LED Cinema Display:
Display Type: LCD
Resolution: 1280 x 720
UI Looks like: 1280 x 720
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 2A10350B6JL
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DVI or HDMI
Adapter Firmware Version: 3.0c
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.1.5
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111110135
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.5.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (6)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash removing dock widget from main window during AlphaFold prediction |
comment:2 by , 4 years ago
ChimeraX crashed when you were closing a window. Do you recall which window you were closing? Was it an AlphaFold Run panel, or was it the main ChimeraX window?
The crash was in QMainWindow::removeDockWidget() -- here is the Qt source code for that
void QMainWindow::removeDockWidget(QDockWidget *dockwidget)
{
if (dockwidget) {
d_func()->layout->removeWidget(dockwidget);
dockwidget->hide();
}
}
One simple explanation for the crash would be that either the dock widget (e.g. AlphaFold Run panel) was already destroyed, or the main ChimeraX window was already destroyed. ChimeraX makes the dock widgets as children of the main window, so I think if the main window was deleted, all the children would be deleted first. So my best guess is the dock widget is already deleted.
comment:3 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
I put in some code to better protect against tool window dock widgets being destroyed twice. I don't think this will fix this crash but it seems like a good safety measure.
follow-up: 4 comment:4 by , 4 years ago
The self.tool_window = None is done only after other calls like
self.main_window._tool_window_destroyed(self.tool_window)
self.main_window.removeDockWidget(self.dock_widget)
and if those calls somehow triggered a callback that called destroy again the check for tool_window won't prevent double destroys. But I agree with your conclusion, this isn't likely to fix the crash.
Another scenario is that the tool window has not been destroyed but somehow the dock widget was already destroyed. Our destroy code could check if the dock widget is already destroyed and that has a better chance of fixing this crash, but I didn't do it because it makes the code messy without any way to test if it fixes anything.
comment:5 by , 4 years ago
Okay, perhaps there is some small chance there.
If the dock widget can get destroyed without our destroy() routine getting called, we've got bigger problems!
follow-up: 6 comment:6 by , 4 years ago
There are also other dock_widget methods called before removeDockWidget() that would seem likely to cause a crash if the dock_widget was already destroyed. Still the Qt source code for removeDockWidget() code is very simple, and suggests to me that the cause is using a deleted dock widget.
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Reported by Sudheshna Bodapati