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#5908 closed defect (can't reproduce)

Crash in event loop after hiding models

Reported by:	chimerax-bug-report@…	Owned by:	pett
Priority:	normal	Milestone:
Component:	Core	Version:
Keywords:		Cc:	Tom Goddard
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19043
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x80000003

Thread 0x00003e30 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Current thread 0x00004270 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\Gabriele
> Keller\PowerFolders\50S_Ribosome\Protokoll\Global_S.solf_model.cxs" format
> session

Opened cryosparc_P4_J267__localfilter.mrc as #37, grid size 384,384,384, pixel
1, shown at level 0.88, step 1, values float32  
opened ChimeraX session  

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!37 models

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_23S_rRNA.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_23S_rRNA.pdb  
---  
warnings | CONECT record for nonexistent atom: 97629  
Start residue of secondary structure not found: HELIX 1 1 ILE B 6 LYS B 12 1 7  
Start residue of secondary structure not found: HELIX 2 2 SER B 21 ARG B 23 1
3  
Start residue of secondary structure not found: HELIX 3 3 LEU B 99 LYS B 101 1
3  
Start residue of secondary structure not found: HELIX 4 4 GLY B 176 ALA B 184
1 9  
Start residue of secondary structure not found: HELIX 5 5 ALA B 199 ASN B 201
1 3  
310 messages similar to the above omitted  
  
Chain information for 6skf_23S_rRNA.pdb #38  
---  
Chain | Description  
B | No description available  
  

> hide #!2,38 atoms

> select sequence UGACCCCGG

382 atoms, 424 bonds, 18 residues, 2 models selected  

> select sequence UGACCCCGG

382 atoms, 424 bonds, 18 residues, 2 models selected  

> style sel stick

Changed 382 atom styles  

> view sel

> show sel atoms

> hide sel atoms

> select clear

> select sequence CCCCGG

1008 atoms, 1112 bonds, 48 residues, 2 models selected  

> show sel atoms

> view sel

> select sequence CCCCGG

1008 atoms, 1112 bonds, 48 residues, 2 models selected  

> select clear

> select sequence CCCCGG

1008 atoms, 1112 bonds, 48 residues, 2 models selected  

> view sel

> ui tool show "Side View"

> hide #!38 models

> color sel & #!2 byhetero

> select clear

> save "C:\Users\Gabriele Keller\Desktop\image3.png" supersample 3

> save "C:\Users\Gabriele Keller\Desktop\s.solfconservedregion23S.png" width
> 2400

> show #!38 models

> hide #!2 models

> color #38 #cdcdcd transparency 0

> color #38 #9d9d9d transparency 0

> color #38 #8c8c8c transparency 0

> color #38 #848484 transparency 0

> color #38 #7e7e7e transparency 0

> color #38 #838383 transparency 0

> color #!38 byhetero

> save "C:\Users\Gabriele Keller\Desktop\t.kodaconservedregion23S.png" width
> 2400

> view

> show #1 models

> show #!2 models

> show #3 models

> hide #!2 models

> show #4 models

> show #5 models

> show #!6 models

> show #7 models

> show #8 models

> show #9 models

> show #10 models

> show #11 models

> show #12 models

> show #13 models

> show #14 models

> show #15 models

> show #16 models

> show #17 models

> show #18 models

> show #19 models

> show #20 models

> show #21 models

> show #22 models

> show #23 models

> show #24 models

> show #25 models

> show #26 models

> show #27 models

> show #28 models

> show #29 models

> show #30 models

> show #31 models

> show #32 models

> show #33 models

> show #34 models

> show #!35 models

> show #36 models

> show #1,3-5,7-34,36#!6,35,38 atoms

> hide #36 models

> hide #24 models

> show #24 models

> hide #23 models

> hide #25 models

> hide #1,3-5,7-22,24,26-34#!6,35,38 atoms

> hide #1 models

> hide #3 models

> hide #4 models

> hide #5 models

> hide #!6 models

> hide #7 models

> hide #8 models

> hide #9 models

> hide #10 models

> hide #11 models

> hide #12 models

> hide #13 models

> hide #14 models

> hide #15 models

> hide #16 models

> hide #17 models

> hide #18 models

> hide #19 models

> hide #20 models

> hide #21 models

> hide #22 models

> hide #26 models

> hide #27 models

> hide #28 models

> hide #29 models

> hide #30 models

> hide #31 models

> hide #32 models

> hide #33 models

> hide #34 models

> hide #!35 models

> show #24#!38 atoms

> hide #24#!38 atoms

> select sequence CCCCGG

1008 atoms, 1112 bonds, 48 residues, 2 models selected  

> select sequence CCCCGG

1008 atoms, 1112 bonds, 48 residues, 2 models selected  

> show sel & #!38 atoms

Drag select of 91 residues, 8 atoms, 11 bonds  

> show sel atoms

> select clear

> show #!2 models

> hide #!2 models

> select sequence GAGCG

222 atoms, 248 bonds, 10 residues, 2 models selected  

> select sequence GCGAG

888 atoms, 991 bonds, 1 pseudobond, 40 residues, 3 models selected  

> hide sel & #!38 atoms

> select clear

> hide #24#!38 atoms

> select sequence GCGAG

888 atoms, 991 bonds, 1 pseudobond, 40 residues, 3 models selected  

> show sel & #!38 cartoons

> show sel & #!38 atoms

> show #!2 models

> hide #!38 models

> show sel & #!2 atoms

Drag select of 78 residues  

> show sel atoms

> color sel byhetero

> select clear

> hide #24#!2 atoms

> view

> select clear

> show #3 models

> show #4 models

> show #5 models

> show #!6 models

> show #7 models

> show #8 models

> show #9 models

> show #10 models

> show #11 models

> show #12 models

> show #13 models

> show #14 models

> show #15 models

> show #16 models

> show #17 models

> show #18 models

> show #19 models

> show #20 models

> show #21 models

> show #22 models

> show #23 models

> show #25 models

> show #26 models

> show #27 models

> show #28 models

> show #29 models

> show #30 models

> show #31 models

> show #32 models

> show #33 models

> show #34 models

> show #!35 models

> show #36 models

> show #!38 models

Drag select of 308 residues, 2 pseudobonds  

> show sel atoms

> hide sel atoms

> select clear

Drag select of 72 residues  

> show sel atoms

> select clear

> hide #3-5,7-34,36#!2,6,35,38 atoms

> hide #3 models

> hide #4 models

> hide #5 models

> hide #!6 models

> hide #7 models

> hide #8 models

> hide #9 models

> hide #10 models

> hide #11 models

> hide #12 models

> hide #13 models

> show #13 models

> hide #14 models

> hide #15 models

> hide #16 models

> hide #17 models

> hide #18 models

> show #18 models

> hide #19 models

> hide #20 models

> hide #21 models

> hide #22 models

> hide #23 models

> hide #24 models

> hide #25 models

> hide #26 models

> hide #27 models

> hide #28 models

> hide #29 models

> hide #30 models

> hide #31 models

> hide #32 models

> hide #33 models

> hide #34 models

> hide #!35 models

> hide #36 models

> hide #!38 models

> select #13

637 atoms, 641 bonds, 82 residues, 1 model selected  

> show sel atoms

> color sel byhetero

> select clear

> hide #18 models

> save "C:\Users\Gabriele Keller\Desktop\s.solfconservedregion223S.png" width
> 2400

> show #!38 models

> hide #!2 models

> save "C:\Users\Gabriele Keller\Desktop\t.kodaconservedregion223S.png" width
> 2400

> save "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Protokoll/conserved
> interaction 23S rRNA.cxs"

> close session

> open "C:\Users\Gabriele
> Keller\PowerFolders\50S_Ribosome\Protokoll\Global_S.solf_model.cxs" format
> session

Opened cryosparc_P4_J267__localfilter.mrc as #37, grid size 384,384,384, pixel
1, shown at level 0.88, step 1, values float32  
opened ChimeraX session  

> show #!2 models

> hide #!37 models

Drag select of 41 residues  

> show sel atoms

> color sel byhetero

> ui tool show "Side View"

> select clear

> close session

> open "C:\Users\Gabriele Keller\PowerFolders\50S_Ribosome\Protokoll\conserved
> interaction 23S rRNA.cxs" format session

Opened cryosparc_P4_J267__localfilter.mrc as #37, grid size 384,384,384, pixel
1, shown at level 0.88, step 1, values float32  
opened ChimeraX session  

> save "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Protokoll/conserved
> interaction 23S rRNA.cxs"

> close session

> open "C:\Users\Gabriele
> Keller\PowerFolders\50S_Ribosome\Protokoll\Global_S.solf_model.cxs" format
> session

Opened cryosparc_P4_J267__localfilter.mrc as #37, grid size 384,384,384, pixel
1, shown at level 0.88, step 1, values float32  
opened ChimeraX session  

> show #!2 models

> hide #!37 models

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6O9J_23S_rRNA.pdb"
> "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_23S_rRNA.pdb"
> "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/7AS8_23S_rRNA.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6O9J_23S_rRNA.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS V 14
ALA V 22 1 9  
Start residue of secondary structure not found: HELIX 2 2 HIS V 44 VAL V 47 1
4  
Start residue of secondary structure not found: HELIX 3 3 ALA V 54 PHE V 56 1
3  
Start residue of secondary structure not found: HELIX 4 4 MET C 131 ASN C 133
1 3  
Start residue of secondary structure not found: HELIX 5 5 GLU C 198 MET C 200
1 3  
210 messages similar to the above omitted  
  
Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_23S_rRNA.pdb  
---  
warnings | CONECT record for nonexistent atom: 97629  
Start residue of secondary structure not found: HELIX 1 1 ILE B 6 LYS B 12 1 7  
Start residue of secondary structure not found: HELIX 2 2 SER B 21 ARG B 23 1
3  
Start residue of secondary structure not found: HELIX 3 3 LEU B 99 LYS B 101 1
3  
Start residue of secondary structure not found: HELIX 4 4 GLY B 176 ALA B 184
1 9  
Start residue of secondary structure not found: HELIX 5 5 ALA B 199 ASN B 201
1 3  
310 messages similar to the above omitted  
  
Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/7AS8_23S_rRNA.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY 0 5
ILE 0 19 1 15  
Start residue of secondary structure not found: HELIX 2 2 MET 0 74 ILE 0 83 1
10  
Start residue of secondary structure not found: HELIX 3 3 PRO 0 148 MET 0 150
1 3  
Start residue of secondary structure not found: HELIX 4 4 ASP 0 180 HIS 0 184
1 5  
Start residue of secondary structure not found: HELIX 5 5 PHE 0 187 GLU 0 189
1 3  
247 messages similar to the above omitted  
Cannot find LINK/SSBOND residue CYS (30 )  
Cannot find LINK/SSBOND residue CYS (33 )  
  
Chain information for 6O9J_23S_rRNA.pdb #38  
---  
Chain | Description  
B | No description available  
  
Chain information for 6skf_23S_rRNA.pdb #39  
---  
Chain | Description  
B | No description available  
  
7AS8_23S_rRNA.pdb title:  
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S
subunit with P-TRNA, RQCH, and RQCP/yabo [more info...]  
  
Chain information for 7AS8_23S_rRNA.pdb #40  
---  
Chain | Description  
A | 23S RRNA  
  

> hide #!2,38-40 atoms

> color #39 #737373 transparency 0

> color #39 #767676 transparency 0

> color #38 #0055ff transparency 0

> color #38 #55aaff transparency 0

> color #38 #4993dc transparency 0

> color #38 #00aaff transparency 0

> color #38 #008ed5 transparency 0

> color #38 #0097e3 transparency 0

> color #38 #009dec transparency 0

> color #40 #5500ff transparency 0

> color #40 #5555ff transparency 0

> color #40 #4a4add transparency 0

> hide #!40 models

> hide #!39 models

> hide #!38 models

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_S.solf_global" width 2400

No known data format for file suffix '.solf_global'  

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_S.solf_globa.pngl" width 2400

No known data format for file suffix '.pngl'  

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_S.solf_globa.png" width 2400

> show #!38 models

> show #!39 models

> hide #!38 models

> hide #!2 models

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_T.koda_globa.png" width 2400

> hide #!39 models

> show #!38 models

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_E.coli_globa.png" width 2400

> hide #!38 models

> show #!40 models

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_B.subtilis_globa.png" width
> 2400

> hide #!40 models

> close session

> open "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Coot/Coot final
> refinements/23S_rRNA-coot-102.pdb"

Chain information for 23S_rRNA-coot-102.pdb #1  
---  
Chain | Description  
B | No description available  
  

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/EM_Maps/cryosparc_P4_J267__localfilter.mrc"

Opened cryosparc_P4_J267__localfilter.mrc as #2, grid size 384,384,384, pixel
1, shown at level 0.841, step 2, values float32  

> hide #!2 models

> hide atoms

> color #1 #00761a transparency 0

> ui tool show "Show Sequence Viewer"

> sequence chain /B

Alignment identifier is 1/B  

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> show #!2 models

> volume style mesh

> volume #2 level 1

> transparency 50

> volume style surface

> volume #2 level 0.85

> ui tool show "Side View"

> volume style mesh

> transparency 0

> select /B:523

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /B:523

23 atoms, 25 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> volume #2 step 1

> select clear

> ui tool show "Side View"

> select /B:55

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:54-55

48 atoms, 53 bonds, 2 residues, 1 model selected  

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> view sel

> ui tool show "Side View"

> select clear

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications54.png" width
> 2400

> select /B:523

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /B:523

23 atoms, 25 bonds, 1 residue, 1 model selected  

> view sel

> color sel byhetero

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications523.png" width
> 2400

> select /B:894

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /B:894

23 atoms, 25 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications894.png" width
> 2400

> select /B:934

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:934

24 atoms, 26 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications934.png" width
> 2400

> select /B:1362

21 atoms, 22 bonds, 1 residue, 1 model selected  

> select /B:1362

21 atoms, 22 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1397.png" width
> 2400

> show surfaces

> hide surfaces

> transparency 50

> volume style surface

> transparency 0

> transparency 50

> volume style mesh

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1397.png" width
> 2400

> select /B:1422

23 atoms, 25 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> select /B:1565

23 atoms, 24 bonds, 1 residue, 1 model selected  

> select /B:1565

23 atoms, 24 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> volume style mesh

> volume showOutlineBox true

> volume style surface

> transparency sel 0

> volume style mesh

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1566.png" width
> 2400

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1566.png" width
> 2400

> select /B:1664

23 atoms, 24 bonds, 1 residue, 1 model selected  

> select /B:1664

23 atoms, 24 bonds, 1 residue, 1 model selected  

> volume showOutlineBox false

> view sel

> show sel atoms

> color sel byhetero

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1664.png" width
> 2400

> select /B:2190

23 atoms, 24 bonds, 1 residue, 1 model selected  

> select /B:2190

23 atoms, 24 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2190.png" width
> 2400

> select /B:2578

21 atoms, 22 bonds, 1 residue, 1 model selected  

> select /B:2578

21 atoms, 22 bonds, 1 residue, 1 model selected  

> select /B:2589

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:2589

20 atoms, 21 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2589.png" width
> 2400

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2589.png" width
> 2400

> select /B:2641

21 atoms, 22 bonds, 1 residue, 1 model selected  

> select /B:2641

21 atoms, 22 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2641.png" width
> 2400

> select /B:2708

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:2708

24 atoms, 26 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2708.png" width
> 2400

> volume style surface

> transparency sel 0

> select clear

> select /B:2708

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:2708

24 atoms, 26 bonds, 1 residue, 1 model selected  

> volume #2 color #ffaaff80

> volume style mesh

> volume #2 color #00000080

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2708.png" width
> 2400

> volume #2 color #00761a80

> transparency 0

> transparency 50

> transparency 0

> volume #2 color #000401

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2708.png" width
> 2400

> volume style surface

> transparency 50

> volume #2 color #04040480

> volume #2 color #7a7a7a80

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2708.png" width
> 2400

> volume style mesh

> volume #2 color #00000080

> transparency 0

> transparency 50

> transparency 0

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2708.png" width
> 2400

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:54

24 atoms, 26 bonds, 1 residue, 1 model selected  

> view sel

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications54.png" width
> 2400

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications54.png" width
> 2400

> select /B:523

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /B:523

23 atoms, 25 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications523.png" width
> 2400

> select /B:894

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /B:894

23 atoms, 25 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications894.png" width
> 2400

> select /B:934

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:934

24 atoms, 26 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> select /B:934

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:934

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications934.png" width
> 2400

> select /B:1397

23 atoms, 24 bonds, 1 residue, 1 model selected  

> select /B:1397

23 atoms, 24 bonds, 1 residue, 1 model selected  

> view sel

> show sel atoms

> color sel byhetero

> select /B:1422

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select /B:1422

23 atoms, 25 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1422.png" width
> 2400

> select /B:1565

23 atoms, 24 bonds, 1 residue, 1 model selected  

> select /B:1565

23 atoms, 24 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1566.png" width
> 2400

> select /B:1664

23 atoms, 24 bonds, 1 residue, 1 model selected  

> select /B:1664

23 atoms, 24 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications1664.png" width
> 2400

> select /B:2190

23 atoms, 24 bonds, 1 residue, 1 model selected  

> select /B:2190

23 atoms, 24 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2190.png" width
> 2400

> select /B:2589

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:2589

20 atoms, 21 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2589.png" width
> 2400

> select /B:2641

21 atoms, 22 bonds, 1 residue, 1 model selected  

> select /B:2641

21 atoms, 22 bonds, 1 residue, 1 model selected  

> view sel

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2641.png" width
> 2400

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2641.png" width
> 2400

> select /B:2708

24 atoms, 26 bonds, 1 residue, 1 model selected  

> select /B:2708

24 atoms, 26 bonds, 1 residue, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\23SrRNA_modifications2708.png" width
> 2400

> close session

> open "C:\Users\Gabriele Keller\PowerFolders\50S_Ribosome\Coot\Coot final
> refinements\5S_rRNA-coot-4.pdb" format pdb

Chain information for 5S_rRNA-coot-4.pdb #1  
---  
Chain | Description  
B | No description available  
  

> color #1 #00ad25 transparency 0

> hide atoms

> select sequence CCCGGA

256 atoms, 284 bonds, 12 residues, 1 model selected  

> select sequence CCCGGA

256 atoms, 284 bonds, 12 residues, 1 model selected  

> show sel atoms

> nucleotides sel atoms

> style nucleic & sel stick

Changed 256 atom styles  

> color sel byhetero

> undo

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/EM_Maps/cryosparc_P4_J267__localfilter.mrc"

Opened cryosparc_P4_J267__localfilter.mrc as #2, grid size 384,384,384, pixel
1, shown at level 0.841, step 2, values float32  

> color sel byhetero

> volume style mesh

> color #2 black models transparency 0

> ui tool show "Side View"

> view sel

> select clear

> hide atoms

> ui tool show "Show Sequence Viewer"

> sequence chain /B

Alignment identifier is 1/B  

> select /B:30

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:30-35

128 atoms, 142 bonds, 6 residues, 1 model selected  

> select /B:47

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:47-52

128 atoms, 142 bonds, 6 residues, 1 model selected  

> show sel atoms

> view sel

> hide #!2 models

> select clear

> save "C:\Users\Gabriele Keller\Desktop\5SrRNAwithdensity1.png" width 2400

> show #!2 models

> turn z 90

> turn x 90

> select /B:47

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:47-52

128 atoms, 142 bonds, 6 residues, 1 model selected  

> hide #!2 models

> select clear

> save "C:\Users\Gabriele Keller\Desktop\5SrRNAwithdensity2turnx90.png" width
> 2400

> show #!2 models

> ui tool show "Side View"

> select /B:47

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:47-52

128 atoms, 142 bonds, 6 residues, 1 model selected  

> select clear

> save "C:\Users\Gabriele Keller\Desktop\5SrRNAwithdensity3.png" width 2400

> save "C:\Users\Gabriele Keller\Desktop\5SrRNAwithdensity4.png" width 2400

> select /B:47

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:47-52

128 atoms, 142 bonds, 6 residues, 1 model selected  

> save "C:\Users\Gabriele Keller\Desktop\5SrRNAwithdensity5.png" width 2400

> save "C:\Users\Gabriele Keller\Desktop\5SrRNAwithdensity6.png" width 2400

> select clear

> save "C:\Users\Gabriele Keller\Desktop\5SrRNAwithdensity6.png" width 2400

> save "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/5S_rRNA_map_model_comparison2.cxs"

> close session

> open "C:\Users\Gabriele
> Keller\PowerFolders\50S_Ribosome\Protokoll\Global_S.solf_model.cxs" format
> session

Opened cryosparc_P4_J267__localfilter.mrc as #37, grid size 384,384,384, pixel
1, shown at level 0.88, step 1, values float32  
opened ChimeraX session  

> hide #!37 models

> show #3 models

> select #3

1759 atoms, 1795 bonds, 234 residues, 1 model selected  

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\L2.png" width 2400

> show #4 models

> select #4

2797 atoms, 2864 bonds, 350 residues, 1 model selected  

> hide #3 models

> view sel

> save "C:\Users\Gabriele Keller\Desktop\L3.png" width 2400

> select clear

> save "C:\Users\Gabriele Keller\Desktop\L3.png" width 2400

> select #5

2077 atoms, 2109 bonds, 266 residues, 1 model selected  

> hide #4 models

> show #5 models

> view sel

> select clear

> save "C:\Users\Gabriele Keller\Desktop\L4.png" width 2400

> show #!6 models

> hide #5 models

> select #6

1220 atoms, 1234 bonds, 1 pseudobond, 151 residues, 2 models selected  

> view sel

> save "C:\Users\Gabriele Keller\Desktop\L5.png" width 2400

> select clear

> save "C:\Users\Gabriele Keller\Desktop\L5.png" width 2400

> show #7 models

> select #7

1417 atoms, 1436 bonds, 180 residues, 1 model selected  

> hide #!6 models

> view sel

> ~select #7

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L6.png" width 2400

> show #8 models

> select #8

917 atoms, 926 bonds, 121 residues, 1 model selected  

> view sel

> hide #7 models

> ~select #8

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L7Ae.png" width 2400

> select #9

910 atoms, 919 bonds, 119 residues, 1 model selected  

> show #9 models

> hide #8 models

> show #10 models

> select #10

1353 atoms, 1382 bonds, 168 residues, 1 model selected  

> hide #9 models

> view sel

> ~select #10

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L10e.png" width 2400

> lighting full

> show #11 models

> hide #10 models

> select #11

1117 atoms, 1132 bonds, 140 residues, 1 model selected  

> view sel

> ~select #11

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L13.png" width 2400

> show #12 models

> select #12

1041 atoms, 1061 bonds, 134 residues, 1 model selected  

> hide #11 models

> view sel

> ~select #12

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L14.png" width 2400

> show #13 models

> select #13

637 atoms, 641 bonds, 82 residues, 1 model selected  

> hide #12 models

> view sel

> save "C:\Users\Gabriele Keller\Desktop\L14e.png" width 2400

> ~select #13

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L14e.png" width 2400

> show #14 models

> select #14

751 atoms, 757 bonds, 95 residues, 1 model selected  

> hide #13 models

> view sel

> ~select #14

Nothing selected  

> show #15 models

> select #15

1100 atoms, 1117 bonds, 139 residues, 1 model selected  

> hide #14 models

> view sel

> ~select #15

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L15.png" width 2400

> show #16 models

> select #16

1798 atoms, 1843 bonds, 213 residues, 1 model selected  

> hide #15 models

> view sel

> ~select #16

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L15e.png" width 2400

> show #17 models

> select #17

1541 atoms, 1571 bonds, 193 residues, 1 model selected  

> hide #16 models

> view sel

> ~select #17

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L18.png" width 2400

> show #18 models

> select #18

660 atoms, 672 bonds, 78 residues, 1 model selected  

> hide #17 models

> view sel

> ~select #18

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L18Ae.png" width 2400

> hide #18 models

> show #19 models

> select #19

947 atoms, 961 bonds, 119 residues, 1 model selected  

> view sel

> ~select #19

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L18e.png" width 2400

> show #20 models

> select #20

1187 atoms, 1197 bonds, 147 residues, 1 model selected  

> hide #19 models

> view sel

> ~select #20

Nothing selected  

> ui tool show "Side View"

> save "C:\Users\Gabriele Keller\Desktop\L19e.png" width 2400

> show #21 models

> select #21

776 atoms, 790 bonds, 97 residues, 1 model selected  

> hide #20 models

> view sel

> ~select #21

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L21e.png" width 2400

> show #22 models

> select #22

1265 atoms, 1288 bonds, 155 residues, 1 model selected  

> hide #21 models

> view sel

> ~select #22

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L22.png" width 2400

> show #23 models

> select #23

642 atoms, 650 bonds, 81 residues, 1 model selected  

> hide #22 models

> view sel

> ~select #23

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L23.png" width 2400

> show #24 models

> select #24

924 atoms, 934 bonds, 116 residues, 1 model selected  

> hide #23 models

> view sel

> ~select #24

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L24.png" width 2400

> show #25 models

> select #25

490 atoms, 505 bonds, 59 residues, 1 model selected  

> hide #24 models

> view sel

> ~select #25

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L24e.png" width 2400

> show #26 models

> select #26

546 atoms, 546 bonds, 67 residues, 1 model selected  

> hide #25 models

> view sel

> save "C:\Users\Gabriele Keller\Desktop\L24e.png" width 2400

> save "C:\Users\Gabriele Keller\Desktop\L29.png" width 2400

> ~select #26

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L29.png" width 2400

> show #25 models

> select #25

490 atoms, 505 bonds, 59 residues, 1 model selected  

> hide #26 models

> view sel

> ~select #25

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L24e.png" width 2400

> show #27 models

> select #27

1302 atoms, 1331 bonds, 157 residues, 1 model selected  

> view sel

> hide #25 models

> ~select #27

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L30.png" width 2400

> show #28 models

> select #28

772 atoms, 783 bonds, 99 residues, 1 model selected  

> hide #27 models

> view sel

> ~select #28

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L30e.png" width 2400

> show #29 models

> select #29

681 atoms, 686 bonds, 84 residues, 1 model selected  

> hide #28 models

> view sel

> ~select #29

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L31e.png" width 2400

> show #30 models

> select #30

1080 atoms, 1099 bonds, 130 residues, 1 model selected  

> hide #29 models

> view sel

> ~select #30

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L32e.png" width 2400

> show #31 models

> select #31

698 atoms, 712 bonds, 86 residues, 1 model selected  

> hide #30 models

> view sel

> ~select #31

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L34e.png" width 2400

> show #32 models

> select #32

568 atoms, 583 bonds, 70 residues, 1 model selected  

> hide #31 models

> view sel

> ~select #32

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L37Ae.png" width 2400

> hide #32 models

> show #33 models

> select #33

500 atoms, 510 bonds, 61 residues, 1 model selected  

> view sel

> ~select #33

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L37e.png" width 2400

> show #34 models

> select #34

425 atoms, 434 bonds, 50 residues, 1 model selected  

> hide #33 models

> view sel

> ~select #34

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L39e.png" width 2400

> show #!35 models

> select #35

421 atoms, 422 bonds, 4 pseudobonds, 53 residues, 2 models selected  

> hide #34 models

> view sel

> ~select #35

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L40e.png" width 2400

> show #36 models

> select #36

748 atoms, 758 bonds, 92 residues, 1 model selected  

> hide #!35 models

> view sel

> ~select #36

Nothing selected  

> save "C:\Users\Gabriele Keller\Desktop\L44e.png" width 2400

> close session

> open "C:\Users\Gabriele
> Keller\PowerFolders\50S_Ribosome\Protokoll\Global_S.solf_model.cxs" format
> session

Opened cryosparc_P4_J267__localfilter.mrc as #37, grid size 384,384,384, pixel
1, shown at level 0.88, step 1, values float32  
opened ChimeraX session  

> close session

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_19e.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_19e.pdb  
---  
warnings | CONECT record for nonexistent atom: 43265  
Start residue of secondary structure not found: HELIX 1 1 LEU A 8 ALA A 14 1 7  
Start residue of secondary structure not found: HELIX 2 2 LYS A 25 MET A 27 1
3  
Start residue of secondary structure not found: HELIX 3 3 VAL A 44 ALA A 59 1
16  
Start residue of secondary structure not found: HELIX 4 4 GLN A 76 THR A 86 1
11  
Start residue of secondary structure not found: HELIX 5 5 HIS A 123 ILE A 132
1 10  
120 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 126 126 TYR B 124 ARG B
130 1 7  
Start residue of secondary structure not found: HELIX 127 127 ASP B 146 LYS B
150 1 5  
Start residue of secondary structure not found: HELIX 128 128 THR B 154 LEU B
164 1 11  
Start residue of secondary structure not found: HELIX 129 129 TRP B 167 LYS B
175 1 9  
Start residue of secondary structure not found: HELIX 130 130 LYS B 183 LYS B
185 1 3  
Start residue of secondary structure not found: HELIX 131 131 ILE B 207 ALA B
211 1 5  
7 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 139 139 ALA B 101 ASN B
103 1 3  
Start residue of secondary structure not found: HELIX 140 140 PRO B 143 ALA B
148 1 6  
Start residue of secondary structure not found: HELIX 141 141 LYS B 165 GLU B
174 1 10  
Start residue of secondary structure not found: HELIX 142 142 LYS B 62 THR B
83 1 22  
Start residue of secondary structure not found: HELIX 143 143 PHE B 113 GLY B
115 1 3  
Start residue of secondary structure not found: HELIX 144 144 LYS B 144 GLN B
156 1 13  
9 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 154 154 LYS B 84 ALA B 90
1 7  
Start residue of secondary structure not found: HELIX 155 155 ARG B 108 MET B
122 1 15  
Start residue of secondary structure not found: HELIX 156 156 GLN B 59 ASN B
76 1 18  
Start residue of secondary structure not found: HELIX 157 157 ARG B 79 ASN B
81 1 3  
Start residue of secondary structure not found: HELIX 158 158 LEU B 142 LYS B
155 1 14  
Start residue of secondary structure not found: HELIX 159 159 THR B 173 LEU B
177 1 5  
1 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 161 161 ALA B 33 LYS B 35
1 3  
Start residue of secondary structure not found: HELIX 162 162 ARG B 42 THR B
53 1 12  
Start residue of secondary structure not found: HELIX 163 163 SER B 71 MET B
82 1 12  
Start residue of secondary structure not found: HELIX 164 164 ASP B 88 LYS B
95 1 8  
Start residue of secondary structure not found: HELIX 165 165 MET B 120 ARG B
122 1 3  
Start residue of secondary structure not found: HELIX 166 166 VAL B 131 LEU B
138 1 8  
12 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 179 179 LYS B 5 LYS B 12 1
8  
Start residue of secondary structure not found: HELIX 180 180 VAL B 19 ARG B
32 1 14  
Start residue of secondary structure not found: HELIX 181 181 LEU B 45 LEU B
51 1 7  
Start residue of secondary structure not found: HELIX 182 182 PRO B 82 LYS B
84 1 3  
Start residue of secondary structure not found: HELIX 183 183 LEU B 96 LYS B
107 1 12  
Start residue of secondary structure not found: HELIX 184 184 PRO B 138 LYS B
141 1 4  
12 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 197 197 ILE B 10 GLU B 26
1 17  
Start residue of secondary structure not found: HELIX 198 198 ILE B 30 LEU B
38 1 9  
Start residue of secondary structure not found: HELIX 199 199 ARG B 42 GLN B
44 1 3  
End residue of secondary structure not found: HELIX 200 200 ILE B 50 TYR B 56
1 7  
Start residue of secondary structure not found: HELIX 201 201 GLU B 88 ILE B
95 1 8  
Start residue of secondary structure not found: HELIX 202 202 ILE B 104 ARG B
110 1 7  
End residue of secondary structure not found: HELIX 212 212 GLU B 30 LYS B 44
1 15  
Start residue of secondary structure not found: HELIX 213 213 PRO B 68 SER B
74 1 7  
Start residue of secondary structure not found: HELIX 214 214 PRO B 56 PHE B
58 1 3  
Start residue of secondary structure not found: HELIX 215 215 PRO B 90 HIS B
92 1 3  
Start residue of secondary structure not found: HELIX 216 216 PRO B 30 ILE B
40 1 11  
Start residue of secondary structure not found: HELIX 217 217 LEU B 45 ALA B
57 1 13  
49 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 267 267 ALA B 35 LYS B 43
1 9  
Start residue of secondary structure not found: SHEET 1 1 1 ILE A 31 VAL A 34
0  
Start residue of secondary structure not found: SHEET 2 2 1 TYR A 40 LEU A 42
0  
Start residue of secondary structure not found: SHEET 3 3 1 LEU A 67 VAL A 69
0  
Start residue of secondary structure not found: SHEET 4 4 1 LYS A 89 ILE A 91
0  
Start residue of secondary structure not found: SHEET 5 5 1 LEU A 114 VAL A
116 0  
119 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 125 125 1 LEU B 148 PHE B
151 0  
Start residue of secondary structure not found: SHEET 126 126 1 ARG B 156 THR
B 158 0  
Start residue of secondary structure not found: SHEET 127 127 1 PHE B 41 ILE B
54 0  
Start residue of secondary structure not found: SHEET 128 128 1 GLU B 65 GLU B
74 0  
Start residue of secondary structure not found: SHEET 129 129 1 PHE B 79 GLN B
88 0  
Start residue of secondary structure not found: SHEET 130 130 1 LEU B 93 TRP B
100 0  
22 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 154 154 1 ARG B 8 GLU B 12
0  
Start residue of secondary structure not found: SHEET 155 155 1 GLU B 18 VAL B
21 0  
Start residue of secondary structure not found: SHEET 156 156 1 THR B 25 LYS B
29 0  
Start residue of secondary structure not found: SHEET 157 157 1 GLU B 34 GLU B
38 0  
Start residue of secondary structure not found: SHEET 158 158 1 GLN B 45 PHE B
47 0  
End residue of secondary structure not found: SHEET 159 159 1 LYS B 52 TYR B
56 0  
Start residue of secondary structure not found: SHEET 160 160 1 PHE B 86 VAL B
93 0  
Start residue of secondary structure not found: SHEET 161 161 1 THR B 100 VAL
B 103 0  
Start residue of secondary structure not found: SHEET 162 162 1 GLU B 107 GLU
B 111 0  
Start residue of secondary structure not found: SHEET 163 163 1 ARG B 120 LYS
B 123 0  
Start residue of secondary structure not found: SHEET 164 164 1 VAL B 128 LYS
B 133 0  
45 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 210 210 1 GLU B 112 TRP B
118 0  
Start residue of secondary structure not found: SHEET 211 211 1 TYR B 125 VAL
B 133 0  
Start residue of secondary structure not found: SHEET 212 212 1 ARG B 34 LYS B
39 0  
Start residue of secondary structure not found: SHEET 213 213 1 HIS B 44 VAL B
50 0  
Start residue of secondary structure not found: SHEET 214 214 1 LYS B 57 VAL B
60 0  
Start residue of secondary structure not found: SHEET 215 215 1 ILE B 103 ASP
B 105 0  
12 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 230 230 1 LYS B 82 ILE B
88 0  
Start residue of secondary structure not found: SHEET 231 231 1 LEU B 93 PRO B
95 0  
Start residue of secondary structure not found: SHEET 232 232 1 MET B 18 GLY B
23 0  
Start residue of secondary structure not found: SHEET 233 233 1 LEU B 113 ARG
B 122 0  
Start residue of secondary structure not found: SHEET 234 234 1 TYR B 129 PRO
B 131 0  
Start residue of secondary structure not found: SHEET 235 235 1 ALA B 137 PRO
B 139 0  
7 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 243 243 1 LYS B 51 VAL B
54 0  
Start residue of secondary structure not found: SHEET 244 244 1 GLU B 63 ASP B
70 0  
Start residue of secondary structure not found: SHEET 245 245 1 ARG B 75 GLU B
79 0  
Start residue of secondary structure not found: SHEET 246 246 1 THR B 82 LYS B
84 0  
Start residue of secondary structure not found: SHEET 247 247 1 GLU B 90 PHE B
92 0  
Start residue of secondary structure not found: SHEET 248 248 1 VAL B 100 GLU
B 104 0  
5 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 254 254 1 LYS B 16 MET B
19 0  
Start residue of secondary structure not found: SHEET 255 255 1 LEU B 35 ALA B
39 0  
Start residue of secondary structure not found: SHEET 256 256 1 VAL B 61 PHE B
64 0  
Start residue of secondary structure not found: SHEET 257 257 1 ALA B 83 ASP B
88 0  
Start residue of secondary structure not found: SHEET 258 258 1 VAL B 9 PRO B
14 0  
Start residue of secondary structure not found: SHEET 259 259 1 GLU B 47 ILE B
50 0  
15 messages similar to the above omitted  
  
Chain information for 6skf_rp_19e.pdb #1  
---  
Chain | Description  
B | No description available  
  

> open "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L19e.pdb-coot-1.pdb"

Chimera_docked_L19e.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL19E_SACS2 Q9UX89 50S
ribosomal protein L19e [more info...]  
  
Chain information for Chimera_docked_L19e.pdb-coot-1.pdb #2  
---  
Chain | Description  
A | No description available  
  

> open "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L7Ae.pdb-coot-1.pdb"

Chimera_docked_L7Ae.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL7A_SACS2 P55858 50S
ribosomal protein L7Ae [more info...]  
  
Chain information for Chimera_docked_L7Ae.pdb-coot-1.pdb #3  
---  
Chain | Description  
G | No description available  
  

> hide #2 models

> hide #1 models

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L7Ae.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L7Ae.pdb  
---  
warnings | Bad residue range for secondary structure: HELIX 17 17 ARG A 93 LEU
A 99 1 7  
Bad residue range for secondary structure: HELIX 22 22 LYS A 39 LEU A 58 1 20  
Bad residue range for secondary structure: HELIX 25 25 LEU A 105 ARG A 111 1 7  
Bad residue range for secondary structure: HELIX 29 29 ARG A 12 ALA A 14 1 3  
Bad residue range for secondary structure: HELIX 33 33 LEU A 152 GLU A 154 1 3  
158 messages similar to the above omitted  
  
Chain information for 6skf_rp_L7Ae.pdb #4  
---  
Chain | Description  
A | No description available  
A | No description available  
B | No description available  
B | No description available  
  

> close #4

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L7Ae.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L7Ae.pdb  
---  
warnings | CONECT record for nonexistent atom: 43265  
Start residue of secondary structure not found: HELIX 1 1 LEU A 8 ALA A 14 1 7  
Start residue of secondary structure not found: HELIX 2 2 LYS A 25 MET A 27 1
3  
Start residue of secondary structure not found: HELIX 3 3 VAL A 44 ALA A 59 1
16  
Start residue of secondary structure not found: HELIX 4 4 GLN A 76 THR A 86 1
11  
Start residue of secondary structure not found: HELIX 5 5 HIS A 123 ILE A 132
1 10  
132 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 138 138 LYS B 83 ALA B 94
1 12  
Start residue of secondary structure not found: HELIX 139 139 ALA B 101 ASN B
103 1 3  
Start residue of secondary structure not found: HELIX 140 140 PRO B 143 ALA B
148 1 6  
Start residue of secondary structure not found: HELIX 141 141 LYS B 165 GLU B
174 1 10  
Start residue of secondary structure not found: HELIX 142 142 LYS B 62 THR B
83 1 22  
Start residue of secondary structure not found: HELIX 143 143 PHE B 113 GLY B
115 1 3  
58 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 213 213 PRO B 68 SER B 74
1 7  
Start residue of secondary structure not found: HELIX 214 214 PRO B 56 PHE B
58 1 3  
Start residue of secondary structure not found: HELIX 215 215 PRO B 90 HIS B
92 1 3  
Start residue of secondary structure not found: HELIX 216 216 PRO B 30 ILE B
40 1 11  
Start residue of secondary structure not found: HELIX 217 217 LEU B 45 ALA B
57 1 13  
Start residue of secondary structure not found: HELIX 218 218 LYS B 87 LYS B
106 1 20  
1 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 220 220 GLU B 14 GLU B 23
1 10  
Start residue of secondary structure not found: HELIX 221 221 LYS B 36 PHE B
47 1 12  
Start residue of secondary structure not found: HELIX 222 222 ALA B 76 ARG B
82 1 7  
Start residue of secondary structure not found: HELIX 223 223 PRO B 8 TYR B 16
1 9  
Start residue of secondary structure not found: HELIX 224 224 ARG B 23 ILE B
26 1 4  
Start residue of secondary structure not found: HELIX 225 225 LYS B 33 TYR B
39 1 7  
7 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 233 233 VAL B 43 ARG B 63
1 21  
Start residue of secondary structure not found: HELIX 234 234 GLY B 17 LEU B
26 1 10  
Start residue of secondary structure not found: HELIX 235 235 PRO B 41 LYS B
49 1 9  
Start residue of secondary structure not found: HELIX 236 236 LYS B 61 ARG B
71 1 11  
Start residue of secondary structure not found: HELIX 237 237 ASP B 82 LYS B
88 1 7  
Start residue of secondary structure not found: HELIX 238 238 ILE B 93 ASN B
102 1 10  
229 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 210 210 1 GLU B 112 TRP B
118 0  
Start residue of secondary structure not found: SHEET 211 211 1 TYR B 125 VAL
B 133 0  
Start residue of secondary structure not found: SHEET 212 212 1 ARG B 34 LYS B
39 0  
Start residue of secondary structure not found: SHEET 213 213 1 HIS B 44 VAL B
50 0  
Start residue of secondary structure not found: SHEET 214 214 1 LYS B 57 VAL B
60 0  
Start residue of secondary structure not found: SHEET 215 215 1 ILE B 103 ASP
B 105 0  
3 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 219 219 1 VAL B 80 ALA B
83 0  
Start residue of secondary structure not found: SHEET 220 220 1 GLU B 100 ILE
B 102 0  
Start residue of secondary structure not found: SHEET 221 221 1 VAL B 117 ILE
B 119 0  
Start residue of secondary structure not found: SHEET 222 222 1 ILE B 22 ILE B
24 0  
Start residue of secondary structure not found: SHEET 223 223 1 ILE B 50 LYS B
52 0  
Start residue of secondary structure not found: SHEET 224 224 1 LYS B 4 ARG B
14 0  
1 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 226 226 1 ILE B 52 ILE B
60 0  
Start residue of secondary structure not found: SHEET 227 227 1 LYS B 40 ILE B
43 0  
Start residue of secondary structure not found: SHEET 228 228 1 THR B 62 ARG B
69 0  
Start residue of secondary structure not found: SHEET 229 229 1 ALA B 72 ASP B
79 0  
Start residue of secondary structure not found: SHEET 230 230 1 LYS B 82 ILE B
88 0  
Start residue of secondary structure not found: SHEET 231 231 1 LEU B 93 PRO B
95 0  
7 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 239 239 1 VAL B 51 VAL B
58 0  
Start residue of secondary structure not found: SHEET 240 240 1 LYS B 64 LEU B
70 0  
Start residue of secondary structure not found: SHEET 241 241 1 SER B 28 PRO B
30 0  
Start residue of secondary structure not found: SHEET 242 242 1 ASN B 43 PRO B
45 0  
Start residue of secondary structure not found: SHEET 243 243 1 LYS B 51 VAL B
54 0  
Start residue of secondary structure not found: SHEET 244 244 1 GLU B 63 ASP B
70 0  
6 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 251 251 1 LYS B 3 ARG B 8
0  
Start residue of secondary structure not found: SHEET 252 252 1 LEU B 34 ASP B
38 0  
Start residue of secondary structure not found: SHEET 253 253 1 ILE B 54 GLU B
58 0  
Start residue of secondary structure not found: SHEET 254 254 1 LYS B 16 MET B
19 0  
Start residue of secondary structure not found: SHEET 255 255 1 LEU B 35 ALA B
39 0  
Start residue of secondary structure not found: SHEET 256 256 1 VAL B 61 PHE B
64 0  
8 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 265 265 1 VAL B 23 HIS B
25 0  
Start residue of secondary structure not found: SHEET 266 266 1 VAL B 46 SER B
50 0  
End residue of secondary structure not found: SHEET 267 267 1 ILE B 53 CYS B
56 0  
Start residue of secondary structure not found: SHEET 268 268 1 THR B 62 ALA B
64 0  
End residue of secondary structure not found: SHEET 269 269 1 LEU B 15 CYS B
17 0  
Start residue of secondary structure not found: SHEET 270 270 1 LEU B 39 PRO B
41 0  
Start residue of secondary structure not found: SHEET 271 271 1 LYS B 2 PRO B
4 0  
Start residue of secondary structure not found: SHEET 272 272 1 GLN B 6 CYS B
11 0  
Start residue of secondary structure not found: SHEET 273 273 1 ARG B 16 LYS B
24 0  
Start residue of secondary structure not found: SHEET 274 274 1 LEU B 67 CYS B
71 0  
1 messages similar to the above omitted  
  
Chain information for 6skf_rp_L7Ae.pdb #4  
---  
Chain | Description  
B | No description available  
  

> hide #4 models

> hide #3 models

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L2.pdb"
> "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L3.pdb"
> "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L4.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L2.pdb  
---  
warnings | CONECT record for nonexistent atom: 43265  
Start residue of secondary structure not found: HELIX 1 1 LEU A 8 ALA A 14 1 7  
Start residue of secondary structure not found: HELIX 2 2 LYS A 25 MET A 27 1
3  
Start residue of secondary structure not found: HELIX 3 3 VAL A 44 ALA A 59 1
16  
Start residue of secondary structure not found: HELIX 4 4 GLN A 76 THR A 86 1
11  
Start residue of secondary structure not found: HELIX 5 5 HIS A 123 ILE A 132
1 10  
105 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 116 116 VAL B 108 ARG B
110 1 3  
Start residue of secondary structure not found: HELIX 117 117 GLU B 121 VAL B
135 1 15  
Start residue of secondary structure not found: HELIX 118 118 PRO B 151 LEU B
153 1 3  
Start residue of secondary structure not found: HELIX 119 119 LYS B 173 LYS B
182 1 10  
Start residue of secondary structure not found: HELIX 120 120 ALA B 189 GLU B
191 1 3  
Start residue of secondary structure not found: HELIX 121 121 PRO B 213 TRP B
217 1 5  
8 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 130 130 LYS B 183 LYS B
185 1 3  
Start residue of secondary structure not found: HELIX 131 131 ILE B 207 ALA B
211 1 5  
Start residue of secondary structure not found: HELIX 132 132 VAL B 222 ASN B
224 1 3  
End residue of secondary structure not found: HELIX 133 133 VAL B 227 LEU B
230 1 4  
Start residue of secondary structure not found: HELIX 134 134 LYS B 244 ILE B
253 1 10  
Start residue of secondary structure not found: HELIX 135 135 GLU B 6 ALA B 14
1 9  
Start residue of secondary structure not found: HELIX 136 136 PRO B 16 ARG B
18 1 3  
Start residue of secondary structure not found: HELIX 137 137 ALA B 41 LEU B
48 1 8  
Start residue of secondary structure not found: HELIX 138 138 LYS B 83 ALA B
94 1 12  
3 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 142 142 LYS B 62 THR B 83
1 22  
Start residue of secondary structure not found: HELIX 143 143 PHE B 113 GLY B
115 1 3  
Start residue of secondary structure not found: HELIX 144 144 LYS B 144 GLN B
156 1 13  
Start residue of secondary structure not found: HELIX 145 145 GLN B 13 ASP B
28 1 16  
Start residue of secondary structure not found: HELIX 146 146 THR B 36 ARG B
45 1 10  
Start residue of secondary structure not found: HELIX 147 147 GLU B 60 ILE B
62 1 3  
14 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 162 162 ARG B 42 THR B 53
1 12  
Start residue of secondary structure not found: HELIX 163 163 SER B 71 MET B
82 1 12  
Start residue of secondary structure not found: HELIX 164 164 ASP B 88 LYS B
95 1 8  
Start residue of secondary structure not found: HELIX 165 165 MET B 120 ARG B
122 1 3  
End residue of secondary structure not found: HELIX 166 166 VAL B 131 LEU B
138 1 8  
Start residue of secondary structure not found: HELIX 167 167 PRO B 71 MET B
73 1 3  
Start residue of secondary structure not found: HELIX 168 168 ARG B 124 ARG B
129 1 6  
Start residue of secondary structure not found: HELIX 169 169 VAL B 50 HIS B
52 1 3  
Start residue of secondary structure not found: HELIX 170 170 ASP B 68 ALA B
78 1 11  
Start residue of secondary structure not found: HELIX 171 171 VAL B 50 HIS B
52 1 3  
4 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 176 176 LEU B 78 GLU B 83
1 6  
Start residue of secondary structure not found: HELIX 177 177 PHE B 85 ASP B
90 1 6  
Start residue of secondary structure not found: HELIX 178 178 PRO B 132 ALA B
141 1 10  
Start residue of secondary structure not found: HELIX 179 179 LYS B 5 LYS B 12
1 8  
Start residue of secondary structure not found: HELIX 180 180 VAL B 19 ARG B
32 1 14  
Start residue of secondary structure not found: HELIX 181 181 LEU B 45 LEU B
51 1 7  
Start residue of secondary structure not found: HELIX 182 182 PRO B 82 LYS B
84 1 3  
5 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 188 188 ARG B 187 HIS B
189 1 3  
Start residue of secondary structure not found: HELIX 189 189 ARG B 12 GLU B
16 1 5  
Start residue of secondary structure not found: HELIX 190 190 TYR B 21 LYS B
29 1 9  
Start residue of secondary structure not found: HELIX 191 191 THR B 64 MET B
68 1 5  
Start residue of secondary structure not found: HELIX 192 192 THR B 80 ALA B
97 1 18  
Start residue of secondary structure not found: HELIX 193 193 SER B 116 ASP B
126 1 11  
5 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 199 199 ARG B 42 GLN B 44
1 3  
Start residue of secondary structure not found: HELIX 200 200 ILE B 50 TYR B
56 1 7  
End residue of secondary structure not found: HELIX 201 201 GLU B 88 ILE B 95
1 8  
Start residue of secondary structure not found: HELIX 202 202 ILE B 104 ARG B
110 1 7  
Start residue of secondary structure not found: HELIX 203 203 LEU B 4 LEU B 15
1 12  
Start residue of secondary structure not found: HELIX 204 204 ILE B 29 ALA B
33 1 5  
Start residue of secondary structure not found: HELIX 205 205 ARG B 38 ASP B
47 1 10  
Start residue of secondary structure not found: HELIX 206 206 ALA B 61 LYS B
72 1 12  
8 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 215 215 PRO B 90 HIS B 92
1 3  
Start residue of secondary structure not found: HELIX 216 216 PRO B 30 ILE B
40 1 11  
Start residue of secondary structure not found: HELIX 217 217 LEU B 45 ALA B
57 1 13  
Start residue of secondary structure not found: HELIX 218 218 LYS B 87 LYS B
106 1 20  
Start residue of secondary structure not found: HELIX 219 219 VAL B 110 ARG B
112 1 3  
Start residue of secondary structure not found: HELIX 220 220 GLU B 14 GLU B
23 1 10  
3 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 224 224 ARG B 23 ILE B 26
1 4  
Start residue of secondary structure not found: HELIX 225 225 LYS B 33 TYR B
39 1 7  
Start residue of secondary structure not found: HELIX 226 226 PRO B 97 ASN B
99 1 3  
Start residue of secondary structure not found: HELIX 227 227 GLU B 110 ARG B
118 1 9  
Start residue of secondary structure not found: HELIX 228 228 SER B 35 MET B
43 1 9  
Start residue of secondary structure not found: HELIX 229 229 PRO B 47 LYS B
49 1 3  
8 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 238 238 ILE B 93 ASN B 102
1 10  
Start residue of secondary structure not found: HELIX 239 239 LEU B 107 ASP B
109 1 3  
Start residue of secondary structure not found: HELIX 240 240 GLU B 145 ARG B
153 1 9  
Start residue of secondary structure not found: HELIX 241 241 ALA B 5 THR B 14
1 10  
Start residue of secondary structure not found: HELIX 242 242 ALA B 21 VAL B
30 1 10  
Start residue of secondary structure not found: HELIX 243 243 PRO B 44 SER B
57 1 14  
146 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 132 132 1 VAL B 162 ALA B
166 0  
Start residue of secondary structure not found: SHEET 133 133 1 LEU B 199 VAL
B 204 0  
Start residue of secondary structure not found: SHEET 134 134 1 GLY B 207 GLN
B 211 0  
Start residue of secondary structure not found: SHEET 135 135 1 GLY B 254 GLY
B 257 0  
Start residue of secondary structure not found: SHEET 136 136 1 HIS B 260 GLU
B 263 0  
Start residue of secondary structure not found: SHEET 137 137 1 LEU B 268 GLU
B 273 0  
47 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 186 186 1 LEU B 97 VAL B
99 0  
End residue of secondary structure not found: SHEET 187 187 1 TYR B 128 THR B
130 0  
Start residue of secondary structure not found: SHEET 188 188 1 TYR B 26 LYS B
28 0  
Start residue of secondary structure not found: SHEET 189 189 1 VAL B 37 VAL B
43 0  
Start residue of secondary structure not found: SHEET 190 190 1 MET B 61 VAL B
66 0  
End residue of secondary structure not found: SHEET 191 191 1 VAL B 77 ARG B
84 0  
Start residue of secondary structure not found: SHEET 192 192 1 ARG B 96 LYS B
98 0  
Start residue of secondary structure not found: SHEET 193 193 1 ALA B 103 VAL
B 107 0  
Start residue of secondary structure not found: SHEET 194 194 1 ILE B 9 VAL B
12 0  
Start residue of secondary structure not found: SHEET 195 195 1 GLN B 20 ILE B
27 0  
Start residue of secondary structure not found: SHEET 196 196 1 PHE B 32 THR B
36 0  
11 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 208 208 1 VAL B 36 ILE B
39 0  
Start residue of secondary structure not found: SHEET 209 209 1 TYR B 59 ARG B
67 0  
End residue of secondary structure not found: SHEET 210 210 1 GLU B 112 TRP B
118 0  
Start residue of secondary structure not found: SHEET 211 211 1 TYR B 125 VAL
B 133 0  
Start residue of secondary structure not found: SHEET 212 212 1 ARG B 34 LYS B
39 0  
Start residue of secondary structure not found: SHEET 213 213 1 HIS B 44 VAL B
50 0  
Start residue of secondary structure not found: SHEET 214 214 1 LYS B 57 VAL B
60 0  
Start residue of secondary structure not found: SHEET 215 215 1 ILE B 103 ASP
B 105 0  
End residue of secondary structure not found: SHEET 216 216 1 GLU B 47 ASN B
49 0  
Start residue of secondary structure not found: SHEET 217 217 1 VAL B 62 VAL B
65 0  
Start residue of secondary structure not found: SHEET 218 218 1 SER B 68 LEU B
70 0  
Start residue of secondary structure not found: SHEET 219 219 1 VAL B 80 ALA B
83 0  
Start residue of secondary structure not found: SHEET 220 220 1 GLU B 100 ILE
B 102 0  
Start residue of secondary structure not found: SHEET 221 221 1 VAL B 117 ILE
B 119 0  
29 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 251 251 1 LYS B 3 ARG B 8
0  
Start residue of secondary structure not found: SHEET 252 252 1 LEU B 34 ASP B
38 0  
Start residue of secondary structure not found: SHEET 253 253 1 ILE B 54 GLU B
58 0  
Start residue of secondary structure not found: SHEET 254 254 1 LYS B 16 MET B
19 0  
End residue of secondary structure not found: SHEET 255 255 1 LEU B 35 ALA B
39 0  
End residue of secondary structure not found: SHEET 256 256 1 VAL B 61 PHE B
64 0  
Start residue of secondary structure not found: SHEET 257 257 1 ALA B 83 ASP B
88 0  
Start residue of secondary structure not found: SHEET 258 258 1 VAL B 9 PRO B
14 0  
End residue of secondary structure not found: SHEET 259 259 1 GLU B 47 ILE B
50 0  
End residue of secondary structure not found: SHEET 260 260 1 LYS B 69 GLU B
78 0  
Start residue of secondary structure not found: SHEET 261 261 1 ARG B 83 LEU B
89 0  
Start residue of secondary structure not found: SHEET 262 262 1 GLU B 78 VAL B
82 0  
Start residue of secondary structure not found: SHEET 263 263 1 GLN B 96 ILE B
100 0  
Start residue of secondary structure not found: SHEET 264 264 1 LYS B 13 VAL B
15 0  
Start residue of secondary structure not found: SHEET 265 265 1 VAL B 23 HIS B
25 0  
10 messages similar to the above omitted  
  
Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L3.pdb  
---  
warnings | CONECT record for nonexistent atom: 43265  
Start residue of secondary structure not found: HELIX 1 1 LEU A 8 ALA A 14 1 7  
Start residue of secondary structure not found: HELIX 2 2 LYS A 25 MET A 27 1
3  
Start residue of secondary structure not found: HELIX 3 3 VAL A 44 ALA A 59 1
16  
Start residue of secondary structure not found: HELIX 4 4 GLN A 76 THR A 86 1
11  
Start residue of secondary structure not found: HELIX 5 5 HIS A 123 ILE A 132
1 10  
123 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 136 136 PRO B 16 ARG B 18
1 3  
Start residue of secondary structure not found: HELIX 137 137 ALA B 41 LEU B
48 1 8  
Start residue of secondary structure not found: HELIX 138 138 LYS B 83 ALA B
94 1 12  
Start residue of secondary structure not found: HELIX 139 139 ALA B 101 ASN B
103 1 3  
Start residue of secondary structure not found: HELIX 140 140 PRO B 143 ALA B
148 1 6  
Start residue of secondary structure not found: HELIX 141 141 LYS B 165 GLU B
174 1 10  
End residue of secondary structure not found: HELIX 142 142 LYS B 62 THR B 83
1 22  
Start residue of secondary structure not found: HELIX 143 143 PHE B 113 GLY B
115 1 3  
Start residue of secondary structure not found: HELIX 144 144 LYS B 144 GLN B
156 1 13  
Start residue of secondary structure not found: HELIX 145 145 GLN B 13 ASP B
28 1 16  
Start residue of secondary structure not found: HELIX 146 146 THR B 36 ARG B
45 1 10  
Start residue of secondary structure not found: HELIX 147 147 GLU B 60 ILE B
62 1 3  
28 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 176 176 LEU B 78 GLU B 83
1 6  
Start residue of secondary structure not found: HELIX 177 177 PHE B 85 ASP B
90 1 6  
Start residue of secondary structure not found: HELIX 178 178 PRO B 132 ALA B
141 1 10  
Start residue of secondary structure not found: HELIX 179 179 LYS B 5 LYS B 12
1 8  
Start residue of secondary structure not found: HELIX 180 180 VAL B 19 ARG B
32 1 14  
Start residue of secondary structure not found: HELIX 181 181 LEU B 45 LEU B
51 1 7  
Start residue of secondary structure not found: HELIX 182 182 PRO B 82 LYS B
84 1 3  
216 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 150 150 1 ILE B 54 ARG B
56 0  
Start residue of secondary structure not found: SHEET 151 151 1 ALA B 74 LEU B
79 0  
Start residue of secondary structure not found: SHEET 152 152 1 PHE B 110 PHE
B 112 0  
Start residue of secondary structure not found: SHEET 153 153 1 MET B 134 LEU
B 140 0  
End residue of secondary structure not found: SHEET 154 154 1 ARG B 8 GLU B 12
0  
Start residue of secondary structure not found: SHEET 155 155 1 GLU B 18 VAL B
21 0  
Start residue of secondary structure not found: SHEET 156 156 1 THR B 25 LYS B
29 0  
Start residue of secondary structure not found: SHEET 157 157 1 GLU B 34 GLU B
38 0  
Start residue of secondary structure not found: SHEET 158 158 1 GLN B 45 PHE B
47 0  
Start residue of secondary structure not found: SHEET 159 159 1 LYS B 52 TYR B
56 0  
43 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 204 204 1 VAL B 75 ASN B
77 0  
Start residue of secondary structure not found: SHEET 205 205 1 VAL B 102 ASP
B 104 0  
Start residue of secondary structure not found: SHEET 206 206 1 LYS B 112 LEU
B 114 0  
Start residue of secondary structure not found: SHEET 207 207 1 VAL B 124 LYS
B 126 0  
End residue of secondary structure not found: SHEET 208 208 1 VAL B 36 ILE B
39 0  
Start residue of secondary structure not found: SHEET 209 209 1 TYR B 59 ARG B
67 0  
Start residue of secondary structure not found: SHEET 210 210 1 GLU B 112 TRP
B 118 0  
Start residue of secondary structure not found: SHEET 211 211 1 TYR B 125 VAL
B 133 0  
Start residue of secondary structure not found: SHEET 212 212 1 ARG B 34 LYS B
39 0  
Start residue of secondary structure not found: SHEET 213 213 1 HIS B 44 VAL B
50 0  
5 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 219 219 1 VAL B 80 ALA B
83 0  
Start residue of secondary structure not found: SHEET 220 220 1 GLU B 100 ILE
B 102 0  
Start residue of secondary structure not found: SHEET 221 221 1 VAL B 117 ILE
B 119 0  
Start residue of secondary structure not found: SHEET 222 222 1 ILE B 22 ILE B
24 0  
Start residue of secondary structure not found: SHEET 223 223 1 ILE B 50 LYS B
52 0  
Start residue of secondary structure not found: SHEET 224 224 1 LYS B 4 ARG B
14 0  
6 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 231 231 1 LEU B 93 PRO B
95 0  
Start residue of secondary structure not found: SHEET 232 232 1 MET B 18 GLY B
23 0  
Start residue of secondary structure not found: SHEET 233 233 1 LEU B 113 ARG
B 122 0  
Start residue of secondary structure not found: SHEET 234 234 1 TYR B 129 PRO
B 131 0  
Start residue of secondary structure not found: SHEET 235 235 1 ALA B 137 PRO
B 139 0  
Start residue of secondary structure not found: SHEET 236 236 1 THR B 145 GLU
B 153 0  
3 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 240 240 1 LYS B 64 LEU B
70 0  
Start residue of secondary structure not found: SHEET 241 241 1 SER B 28 PRO B
30 0  
Start residue of secondary structure not found: SHEET 242 242 1 ASN B 43 PRO B
45 0  
Start residue of secondary structure not found: SHEET 243 243 1 LYS B 51 VAL B
54 0  
Start residue of secondary structure not found: SHEET 244 244 1 GLU B 63 ASP B
70 0  
Start residue of secondary structure not found: SHEET 245 245 1 ARG B 75 GLU B
79 0  
6 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 253 253 1 ILE B 54 GLU B
58 0  
Start residue of secondary structure not found: SHEET 254 254 1 LYS B 16 MET B
19 0  
Start residue of secondary structure not found: SHEET 255 255 1 LEU B 35 ALA B
39 0  
Start residue of secondary structure not found: SHEET 256 256 1 VAL B 61 PHE B
64 0  
Start residue of secondary structure not found: SHEET 257 257 1 ALA B 83 ASP B
88 0  
Start residue of secondary structure not found: SHEET 258 258 1 VAL B 9 PRO B
14 0  
11 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 270 270 1 LEU B 39 PRO B
41 0  
Start residue of secondary structure not found: SHEET 271 271 1 LYS B 2 PRO B
4 0  
Start residue of secondary structure not found: SHEET 272 272 1 GLN B 6 CYS B
11 0  
Start residue of secondary structure not found: SHEET 273 273 1 ARG B 16 LYS B
24 0  
Start residue of secondary structure not found: SHEET 274 274 1 LEU B 67 CYS B
71 0  
Start residue of secondary structure not found: SHEET 275 275 1 GLU B 90 VAL B
92 0  
  
Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L4.pdb  
---  
warnings | CONECT record for nonexistent atom: 43265  
Start residue of secondary structure not found: HELIX 1 1 LEU A 8 ALA A 14 1 7  
Start residue of secondary structure not found: HELIX 2 2 LYS A 25 MET A 27 1
3  
Start residue of secondary structure not found: HELIX 3 3 VAL A 44 ALA A 59 1
16  
Start residue of secondary structure not found: HELIX 4 4 GLN A 76 THR A 86 1
11  
Start residue of secondary structure not found: HELIX 5 5 HIS A 123 ILE A 132
1 10  
140 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 158 158 LEU B 142 LYS B
155 1 14  
Start residue of secondary structure not found: HELIX 159 159 THR B 173 LEU B
177 1 5  
Start residue of secondary structure not found: HELIX 160 160 LEU B 11 GLU B
24 1 14  
Start residue of secondary structure not found: HELIX 161 161 ALA B 33 LYS B
35 1 3  
End residue of secondary structure not found: HELIX 162 162 ARG B 42 THR B 53
1 12  
Start residue of secondary structure not found: HELIX 163 163 SER B 71 MET B
82 1 12  
Start residue of secondary structure not found: HELIX 164 164 ASP B 88 LYS B
95 1 8  
Start residue of secondary structure not found: HELIX 165 165 MET B 120 ARG B
122 1 3  
Start residue of secondary structure not found: HELIX 166 166 VAL B 131 LEU B
138 1 8  
Start residue of secondary structure not found: HELIX 167 167 PRO B 71 MET B
73 1 3  
Start residue of secondary structure not found: HELIX 168 168 ARG B 124 ARG B
129 1 6  
8 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 177 177 PHE B 85 ASP B 90
1 6  
Start residue of secondary structure not found: HELIX 178 178 PRO B 132 ALA B
141 1 10  
Start residue of secondary structure not found: HELIX 179 179 LYS B 5 LYS B 12
1 8  
Start residue of secondary structure not found: HELIX 180 180 VAL B 19 ARG B
32 1 14  
Start residue of secondary structure not found: HELIX 181 181 LEU B 45 LEU B
51 1 7  
Start residue of secondary structure not found: HELIX 182 182 PRO B 82 LYS B
84 1 3  
5 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 188 188 ARG B 187 HIS B
189 1 3  
Start residue of secondary structure not found: HELIX 189 189 ARG B 12 GLU B
16 1 5  
Start residue of secondary structure not found: HELIX 190 190 TYR B 21 LYS B
29 1 9  
Start residue of secondary structure not found: HELIX 191 191 THR B 64 MET B
68 1 5  
Start residue of secondary structure not found: HELIX 192 192 THR B 80 ALA B
97 1 18  
End residue of secondary structure not found: HELIX 193 193 SER B 116 ASP B
126 1 11  
Start residue of secondary structure not found: HELIX 194 194 ASP B 141 ILE B
144 1 4  
Start residue of secondary structure not found: HELIX 195 195 ILE B 149 LYS B
154 1 6  
Start residue of secondary structure not found: HELIX 196 196 PRO B 182 LYS B
195 1 14  
Start residue of secondary structure not found: HELIX 197 197 ILE B 10 GLU B
26 1 17  
Start residue of secondary structure not found: HELIX 198 198 ILE B 30 LEU B
38 1 9  
10 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 210 210 ALA B 117 GLY B
129 1 13  
Start residue of secondary structure not found: HELIX 211 211 LYS B 135 GLU B
144 1 10  
Start residue of secondary structure not found: HELIX 212 212 GLU B 30 LYS B
44 1 15  
Start residue of secondary structure not found: HELIX 213 213 PRO B 68 SER B
74 1 7  
Start residue of secondary structure not found: HELIX 214 214 PRO B 56 PHE B
58 1 3  
Start residue of secondary structure not found: HELIX 215 215 PRO B 90 HIS B
92 1 3  
4 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 220 220 GLU B 14 GLU B 23
1 10  
Start residue of secondary structure not found: HELIX 221 221 LYS B 36 PHE B
47 1 12  
Start residue of secondary structure not found: HELIX 222 222 ALA B 76 ARG B
82 1 7  
Start residue of secondary structure not found: HELIX 223 223 PRO B 8 TYR B 16
1 9  
Start residue of secondary structure not found: HELIX 224 224 ARG B 23 ILE B
26 1 4  
Start residue of secondary structure not found: HELIX 225 225 LYS B 33 TYR B
39 1 7  
25 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 251 251 ILE B 61 TRP B 63
1 3  
Start residue of secondary structure not found: HELIX 252 252 VAL B 85 LEU B
88 1 4  
Start residue of secondary structure not found: HELIX 253 253 ALA B 106 LEU B
119 1 14  
Start residue of secondary structure not found: HELIX 254 254 PRO B 51 ARG B
55 1 5  
Start residue of secondary structure not found: HELIX 255 255 LYS B 59 LYS B
61 1 3  
Start residue of secondary structure not found: HELIX 256 256 PRO B 73 ALA B
86 1 14  
4 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 261 261 LYS B 54 ARG B 59
1 6  
Start residue of secondary structure not found: HELIX 262 262 PHE B 7 GLN B 19
1 13  
Start residue of secondary structure not found: HELIX 263 263 VAL B 25 THR B
31 1 7  
Start residue of secondary structure not found: HELIX 264 264 PRO B 5 ILE B 11
1 7  
Start residue of secondary structure not found: HELIX 265 265 PRO B 5 TRP B 8
1 4  
Start residue of secondary structure not found: HELIX 266 266 TRP B 16 ARG B
34 1 19  
125 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 125 125 1 LEU B 148 PHE B
151 0  
Start residue of secondary structure not found: SHEET 126 126 1 ARG B 156 THR
B 158 0  
Start residue of secondary structure not found: SHEET 127 127 1 PHE B 41 ILE B
54 0  
Start residue of secondary structure not found: SHEET 128 128 1 GLU B 65 GLU B
74 0  
End residue of secondary structure not found: SHEET 129 129 1 PHE B 79 GLN B
88 0  
Start residue of secondary structure not found: SHEET 130 130 1 LEU B 93 TRP B
100 0  
Start residue of secondary structure not found: SHEET 131 131 1 ASP B 142 HIS
B 148 0  
Start residue of secondary structure not found: SHEET 132 132 1 VAL B 162 ALA
B 166 0  
Start residue of secondary structure not found: SHEET 133 133 1 LEU B 199 VAL
B 204 0  
Start residue of secondary structure not found: SHEET 134 134 1 GLY B 207 GLN
B 211 0  
83 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 224 224 1 LYS B 4 ARG B 14
0  
Start residue of secondary structure not found: SHEET 225 225 1 LYS B 17 ALA B
27 0  
Start residue of secondary structure not found: SHEET 226 226 1 ILE B 52 ILE B
60 0  
Start residue of secondary structure not found: SHEET 227 227 1 LYS B 40 ILE B
43 0  
Start residue of secondary structure not found: SHEET 228 228 1 THR B 62 ARG B
69 0  
Start residue of secondary structure not found: SHEET 229 229 1 ALA B 72 ASP B
79 0  
6 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 236 236 1 THR B 145 GLU B
153 0  
Start residue of secondary structure not found: SHEET 237 237 1 ILE B 7 PRO B
10 0  
Start residue of secondary structure not found: SHEET 238 238 1 LYS B 25 VAL B
30 0  
Start residue of secondary structure not found: SHEET 239 239 1 VAL B 51 VAL B
58 0  
Start residue of secondary structure not found: SHEET 240 240 1 LYS B 64 LEU B
70 0  
Start residue of secondary structure not found: SHEET 241 241 1 SER B 28 PRO B
30 0  
7 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 249 249 1 LYS B 20 VAL B
23 0  
Start residue of secondary structure not found: SHEET 250 250 1 VAL B 29 PHE B
32 0  
Start residue of secondary structure not found: SHEET 251 251 1 LYS B 3 ARG B
8 0  
Start residue of secondary structure not found: SHEET 252 252 1 LEU B 34 ASP B
38 0  
Start residue of secondary structure not found: SHEET 253 253 1 ILE B 54 GLU B
58 0  
Start residue of secondary structure not found: SHEET 254 254 1 LYS B 16 MET B
19 0  
16 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 271 271 1 LYS B 2 PRO B 4
0  
Start residue of secondary structure not found: SHEET 272 272 1 GLN B 6 CYS B
11 0  
Start residue of secondary structure not found: SHEET 273 273 1 ARG B 16 LYS B
24 0  
Start residue of secondary structure not found: SHEET 274 274 1 LEU B 67 CYS B
71 0  
Start residue of secondary structure not found: SHEET 275 275 1 GLU B 90 VAL B
92 0  
  
Chain information for 6skf_rp_L2.pdb #5  
---  
Chain | Description  
B | No description available  
  
Chain information for 6skf_rp_L3.pdb #6  
---  
Chain | Description  
B | No description available  
  
Chain information for 6skf_rp_L4.pdb #7  
---  
Chain | Description  
B | No description available  
  

> open "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L2.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L3.pdb-coot-10.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L4.pdb-coot-2.pdb"

Chimera_docked_L2.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL2_SACS2 Q9UXA5 50S
ribosomal protein L2 [more info...]  
  
Chain information for Chimera_docked_L2.pdb-coot-1.pdb #8  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L3.pdb-coot-10.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL3_SACS2 Q9UXA8 50S
ribosomal protein L3 [more info...]  
  
Chain information for Chimera_docked_L3.pdb-coot-10.pdb #9  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L4.pdb-coot-2.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL4_SACS2 Q9UXA6 50S
ribosomal protein L4 [more info...]  
  
Chain information for Chimera_docked_L4.pdb-coot-2.pdb #10  
---  
Chain | Description  
A | No description available  
  

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L5_L6andL10e.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_L5_L6andL10e.pdb  
---  
warnings | CONECT record for nonexistent atom: 43265  
Start residue of secondary structure not found: HELIX 1 1 LEU A 8 ALA A 14 1 7  
Start residue of secondary structure not found: HELIX 2 2 LYS A 25 MET A 27 1
3  
Start residue of secondary structure not found: HELIX 3 3 VAL A 44 ALA A 59 1
16  
Start residue of secondary structure not found: HELIX 4 4 GLN A 76 THR A 86 1
11  
Start residue of secondary structure not found: HELIX 5 5 HIS A 123 ILE A 132
1 10  
107 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 113 113 LEU B 99 LYS B 101
1 3  
Start residue of secondary structure not found: HELIX 114 114 GLY B 176 ALA B
184 1 9  
Start residue of secondary structure not found: HELIX 115 115 ALA B 199 ASN B
201 1 3  
End residue of secondary structure not found: HELIX 116 116 VAL B 108 ARG B
110 1 3  
Start residue of secondary structure not found: HELIX 117 117 GLU B 121 VAL B
135 1 15  
Start residue of secondary structure not found: HELIX 118 118 PRO B 151 LEU B
153 1 3  
Start residue of secondary structure not found: HELIX 119 119 LYS B 173 LYS B
182 1 10  
Start residue of secondary structure not found: HELIX 120 120 ALA B 189 GLU B
191 1 3  
Start residue of secondary structure not found: HELIX 121 121 PRO B 213 TRP B
217 1 5  
8 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 130 130 LYS B 183 LYS B
185 1 3  
Start residue of secondary structure not found: HELIX 131 131 ILE B 207 ALA B
211 1 5  
Start residue of secondary structure not found: HELIX 132 132 VAL B 222 ASN B
224 1 3  
Start residue of secondary structure not found: HELIX 133 133 VAL B 227 LEU B
230 1 4  
Start residue of secondary structure not found: HELIX 134 134 LYS B 244 ILE B
253 1 10  
Start residue of secondary structure not found: HELIX 145 145 GLN B 13 ASP B
28 1 16  
3 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 149 149 LYS B 83 ALA B 90
1 8  
Start residue of secondary structure not found: HELIX 150 150 ARG B 108 MET B
122 1 15  
Start residue of secondary structure not found: HELIX 151 151 GLN B 13 ARG B
27 1 15  
Start residue of secondary structure not found: HELIX 152 152 THR B 36 GLU B
44 1 9  
Start residue of secondary structure not found: HELIX 153 153 PRO B 67 LYS B
73 1 7  
Start residue of secondary structure not found: HELIX 154 154 LYS B 84 ALA B
90 1 7  
1 messages similar to the above omitted  
Bad residue range for secondary structure: HELIX 156 156 GLN B 59 ASN B 76 1
18  
Start residue of secondary structure not found: HELIX 160 160 LEU B 11 GLU B
24 1 14  
Start residue of secondary structure not found: HELIX 161 161 ALA B 33 LYS B
35 1 3  
Start residue of secondary structure not found: HELIX 162 162 ARG B 42 THR B
53 1 12  
Start residue of secondary structure not found: HELIX 163 163 SER B 71 MET B
82 1 12  
Start residue of secondary structure not found: HELIX 164 164 ASP B 88 LYS B
95 1 8  
9 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 174 174 GLY B 28 LYS B 31
1 4  
Start residue of secondary structure not found: HELIX 175 175 TRP B 47 TYR B
53 1 7  
Start residue of secondary structure not found: HELIX 176 176 LEU B 78 GLU B
83 1 6  
Start residue of secondary structure not found: HELIX 177 177 PHE B 85 ASP B
90 1 6  
Start residue of secondary structure not found: HELIX 178 178 PRO B 132 ALA B
141 1 10  
Start residue of secondary structure not found: HELIX 179 179 LYS B 5 LYS B 12
1 8  
End residue of secondary structure not found: HELIX 180 180 VAL B 19 ARG B 32
1 14  
End residue of secondary structure not found: HELIX 181 181 LEU B 45 LEU B 51
1 7  
Start residue of secondary structure not found: HELIX 182 182 PRO B 82 LYS B
84 1 3  
Start residue of secondary structure not found: HELIX 183 183 LEU B 96 LYS B
107 1 12  
Start residue of secondary structure not found: HELIX 184 184 PRO B 138 LYS B
141 1 4  
Start residue of secondary structure not found: HELIX 185 185 TRP B 148 ALA B
150 1 3  
Start residue of secondary structure not found: HELIX 186 186 ARG B 157 ARG B
160 1 4  
17 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 204 204 ILE B 29 ALA B 33
1 5  
Start residue of secondary structure not found: HELIX 205 205 ARG B 38 ASP B
47 1 10  
Bad residue range for secondary structure: HELIX 206 206 ALA B 61 LYS B 72 1
12  
Start residue of secondary structure not found: HELIX 207 207 PRO B 78 SER B
80 1 3  
End residue of secondary structure not found: HELIX 208 208 LYS B 85 ARG B 88
1 4  
Start residue of secondary structure not found: HELIX 209 209 LYS B 92 ALA B
111 1 20  
Start residue of secondary structure not found: HELIX 210 210 ALA B 117 GLY B
129 1 13  
Start residue of secondary structure not found: HELIX 211 211 LYS B 135 GLU B
144 1 10  
Start residue of secondary structure not found: HELIX 212 212 GLU B 30 LYS B
44 1 15  
Start residue of secondary structure not found: HELIX 213 213 PRO B 68 SER B
74 1 7  
1 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 215 215 PRO B 90 HIS B 92
1 3  
Start residue of secondary structure not found: HELIX 216 216 PRO B 30 ILE B
40 1 11  
End residue of secondary structure not found: HELIX 217 217 LEU B 45 ALA B 57
1 13  
End residue of secondary structure not found: HELIX 218 218 LYS B 87 LYS B 106
1 20  
Start residue of secondary structure not found: HELIX 219 219 VAL B 110 ARG B
112 1 3  
Start residue of secondary structure not found: HELIX 220 220 GLU B 14 GLU B
23 1 10  
Start residue of secondary structure not found: HELIX 221 221 LYS B 36 PHE B
47 1 12  
Start residue of secondary structure not found: HELIX 222 222 ALA B 76 ARG B
82 1 7  
Start residue of secondary structure not found: HELIX 223 223 PRO B 8 TYR B 16
1 9  
8 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 232 232 ILE B 11 THR B 33
1 23  
Start residue of secondary structure not found: HELIX 233 233 VAL B 43 ARG B
63 1 21  
Start residue of secondary structure not found: HELIX 234 234 GLY B 17 LEU B
26 1 10  
Start residue of secondary structure not found: HELIX 235 235 PRO B 41 LYS B
49 1 9  
Start residue of secondary structure not found: HELIX 236 236 LYS B 61 ARG B
71 1 11  
Start residue of secondary structure not found: HELIX 237 237 ASP B 82 LYS B
88 1 7  
2 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 240 240 GLU B 145 ARG B
153 1 9  
End residue of secondary structure not found: HELIX 241 241 ALA B 5 THR B 14 1
10  
Start residue of secondary structure not found: HELIX 242 242 ALA B 21 VAL B
30 1 10  
Start residue of secondary structure not found: HELIX 243 243 PRO B 44 SER B
57 1 14  
Start residue of secondary structure not found: HELIX 244 244 SER B 68 LEU B
74 1 7  
Start residue of secondary structure not found: HELIX 245 245 ILE B 94 ALA B
96 1 3  
End residue of secondary structure not found: HELIX 246 246 ARG B 24 ALA B 43
1 20  
Start residue of secondary structure not found: HELIX 247 247 THR B 52 ARG B
61 1 10  
Start residue of secondary structure not found: HELIX 248 248 GLU B 3 LYS B 17
1 15  
Start residue of secondary structure not found: HELIX 249 249 PRO B 30 LYS B
33 1 4  
Start residue of secondary structure not found: HELIX 250 250 LYS B 47 LEU B
50 1 4  
Start residue of secondary structure not found: HELIX 251 251 ILE B 61 TRP B
63 1 3  
3 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 255 255 LYS B 59 LYS B 61
1 3  
Start residue of secondary structure not found: HELIX 256 256 PRO B 73 ALA B
86 1 14  
Start residue of secondary structure not found: HELIX 257 257 SER B 9 ARG B 12
1 4  
Start residue of secondary structure not found: HELIX 258 258 LEU B 19 LYS B
33 1 15  
Start residue of secondary structure not found: HELIX 259 259 PRO B 73 SER B
84 1 12  
End residue of secondary structure not found: HELIX 260 260 ALA B 6 GLY B 9 1
4  
Start residue of secondary structure not found: HELIX 261 261 LYS B 54 ARG B
59 1 6  
Start residue of secondary structure not found: HELIX 262 262 PHE B 7 GLN B 19
1 13  
End residue of secondary structure not found: HELIX 263 263 VAL B 25 THR B 31
1 7  
Bad residue range for secondary structure: HELIX 264 264 PRO B 5 ILE B 11 1 7  
End residue of secondary structure not found: HELIX 265 265 PRO B 5 TRP B 8 1
4  
Start residue of secondary structure not found: HELIX 266 266 TRP B 16 ARG B
34 1 19  
Start residue of secondary structure not found: HELIX 267 267 ALA B 35 LYS B
43 1 9  
Start residue of secondary structure not found: SHEET 1 1 1 ILE A 31 VAL A 34
0  
Start residue of secondary structure not found: SHEET 2 2 1 TYR A 40 LEU A 42
0  
Start residue of secondary structure not found: SHEET 3 3 1 LEU A 67 VAL A 69
0  
117 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 121 121 1 GLU B 82 ILE B
85 0  
Start residue of secondary structure not found: SHEET 122 122 1 THR B 96 PRO B
98 0  
Start residue of secondary structure not found: SHEET 123 123 1 LEU B 130 ARG
B 134 0  
End residue of secondary structure not found: SHEET 124 124 1 VAL B 139 GLN B
142 0  
Start residue of secondary structure not found: SHEET 125 125 1 LEU B 148 PHE
B 151 0  
Start residue of secondary structure not found: SHEET 126 126 1 ARG B 156 THR
B 158 0  
Start residue of secondary structure not found: SHEET 127 127 1 PHE B 41 ILE B
54 0  
Start residue of secondary structure not found: SHEET 128 128 1 GLU B 65 GLU B
74 0  
Start residue of secondary structure not found: SHEET 129 129 1 PHE B 79 GLN B
88 0  
15 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 145 145 1 LEU B 142 VAL B
144 0  
Start residue of secondary structure not found: SHEET 146 146 1 LEU B 198 VAL
B 201 0  
Start residue of secondary structure not found: SHEET 147 147 1 ASP B 218 THR
B 221 0  
Start residue of secondary structure not found: SHEET 148 148 1 ILE B 241 THR
B 243 0  
Bad residue range for secondary structure: SHEET 166 166 1 GLY B 171 LYS B 177
0  
Start residue of secondary structure not found: SHEET 167 167 1 ARG B 31 LYS B
34 0  
Start residue of secondary structure not found: SHEET 168 168 1 LEU B 50 ALA B
54 0  
Start residue of secondary structure not found: SHEET 169 169 1 TYR B 77 VAL B
80 0  
Start residue of secondary structure not found: SHEET 170 170 1 SER B 98 ILE B
102 0  
Start residue of secondary structure not found: SHEET 171 171 1 ARG B 31 LYS B
34 0  
4 messages similar to the above omitted  
Bad residue range for secondary structure: SHEET 184 184 1 VAL B 28 VAL B 31 0  
Start residue of secondary structure not found: SHEET 185 185 1 ILE B 37 THR B
39 0  
Start residue of secondary structure not found: SHEET 186 186 1 LEU B 97 VAL B
99 0  
Start residue of secondary structure not found: SHEET 187 187 1 TYR B 128 THR
B 130 0  
Start residue of secondary structure not found: SHEET 188 188 1 TYR B 26 LYS B
28 0  
Start residue of secondary structure not found: SHEET 189 189 1 VAL B 37 VAL B
43 0  
1 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 191 191 1 VAL B 77 ARG B
84 0  
Start residue of secondary structure not found: SHEET 192 192 1 ARG B 96 LYS B
98 0  
Start residue of secondary structure not found: SHEET 193 193 1 ALA B 103 VAL
B 107 0  
Start residue of secondary structure not found: SHEET 194 194 1 ILE B 9 VAL B
12 0  
Start residue of secondary structure not found: SHEET 195 195 1 GLN B 20 ILE B
27 0  
Start residue of secondary structure not found: SHEET 196 196 1 PHE B 32 THR B
36 0  
16 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 214 214 1 LYS B 57 VAL B
60 0  
Start residue of secondary structure not found: SHEET 215 215 1 ILE B 103 ASP
B 105 0  
Start residue of secondary structure not found: SHEET 216 216 1 GLU B 47 ASN B
49 0  
Start residue of secondary structure not found: SHEET 217 217 1 VAL B 62 VAL B
65 0  
Start residue of secondary structure not found: SHEET 218 218 1 SER B 68 LEU B
70 0  
Start residue of secondary structure not found: SHEET 219 219 1 VAL B 80 ALA B
83 0  
2 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 222 222 1 ILE B 22 ILE B
24 0  
Start residue of secondary structure not found: SHEET 223 223 1 ILE B 50 LYS B
52 0  
Start residue of secondary structure not found: SHEET 224 224 1 LYS B 4 ARG B
14 0  
Start residue of secondary structure not found: SHEET 225 225 1 LYS B 17 ALA B
27 0  
Start residue of secondary structure not found: SHEET 226 226 1 ILE B 52 ILE B
60 0  
End residue of secondary structure not found: SHEET 227 227 1 LYS B 40 ILE B
43 0  
Start residue of secondary structure not found: SHEET 228 228 1 THR B 62 ARG B
69 0  
Start residue of secondary structure not found: SHEET 229 229 1 ALA B 72 ASP B
79 0  
Start residue of secondary structure not found: SHEET 230 230 1 LYS B 82 ILE B
88 0  
Start residue of secondary structure not found: SHEET 231 231 1 LEU B 93 PRO B
95 0  
Start residue of secondary structure not found: SHEET 232 232 1 MET B 18 GLY B
23 0  
4 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 237 237 1 ILE B 7 PRO B 10
0  
Start residue of secondary structure not found: SHEET 238 238 1 LYS B 25 VAL B
30 0  
Start residue of secondary structure not found: SHEET 239 239 1 VAL B 51 VAL B
58 0  
Start residue of secondary structure not found: SHEET 240 240 1 LYS B 64 LEU B
70 0  
Start residue of secondary structure not found: SHEET 241 241 1 SER B 28 PRO B
30 0  
Start residue of secondary structure not found: SHEET 242 242 1 ASN B 43 PRO B
45 0  
1 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 244 244 1 GLU B 63 ASP B
70 0  
Start residue of secondary structure not found: SHEET 245 245 1 ARG B 75 GLU B
79 0  
Start residue of secondary structure not found: SHEET 246 246 1 THR B 82 LYS B
84 0  
Start residue of secondary structure not found: SHEET 247 247 1 GLU B 90 PHE B
92 0  
Start residue of secondary structure not found: SHEET 248 248 1 VAL B 100 GLU
B 104 0  
Start residue of secondary structure not found: SHEET 249 249 1 LYS B 20 VAL B
23 0  
4 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 255 255 1 LEU B 35 ALA B
39 0  
Start residue of secondary structure not found: SHEET 256 256 1 VAL B 61 PHE B
64 0  
Start residue of secondary structure not found: SHEET 257 257 1 ALA B 83 ASP B
88 0  
Start residue of secondary structure not found: SHEET 258 258 1 VAL B 9 PRO B
14 0  
Start residue of secondary structure not found: SHEET 259 259 1 GLU B 47 ILE B
50 0  
Start residue of secondary structure not found: SHEET 260 260 1 LYS B 69 GLU B
78 0  
9 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 270 270 1 LEU B 39 PRO B
41 0  
Start residue of secondary structure not found: SHEET 271 271 1 LYS B 2 PRO B
4 0  
Start residue of secondary structure not found: SHEET 272 272 1 GLN B 6 CYS B
11 0  
Start residue of secondary structure not found: SHEET 273 273 1 ARG B 16 LYS B
24 0  
Start residue of secondary structure not found: SHEET 274 274 1 LEU B 67 CYS B
71 0  
Start residue of secondary structure not found: SHEET 275 275 1 GLU B 90 VAL B
92 0  
  
Chain information for 6skf_rp_L5_L6andL10e.pdb #11  
---  
Chain | Description  
B | No description available  
  

> hide #10 models

> hide #9 models

> hide #8 models

> hide #7 models

> hide #6 models

> hide #5 models

> hide #!11 models

> show #!11 models

> open "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L5.pdb-coot-3.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L6.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L10e.pdb-coot-1.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
Modell/Chimera_docked_L5.pdb-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 3 3 LEU A 119
GLY A 121 1 3  
Start residue of secondary structure not found: SHEET 5 5 5 GLY A 132 GLU A
140 0  
  
Chimera_docked_L5.pdb-coot-3.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL5_SACS2 Q9UX93 50S
ribosomal protein L5 [more info...]  
  
Chain information for Chimera_docked_L5.pdb-coot-3.pdb #12  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L6.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL6_SACS2 Q9UX91 50S
ribosomal protein L6 [more info...]  
  
Chain information for Chimera_docked_L6.pdb-coot-1.pdb #13  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L10e.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL10E_SACS2 Q980J7 50S
ribosomal protein L10e [more info...]  
  
Chain information for Chimera_docked_L10e.pdb-coot-1.pdb #14  
---  
Chain | Description  
J | No description available  
  

> hide #!11 models

> show #!11 models

> hide #!11 models

> show #!11 models

> hide #!11 models

> show #!11 models

> hide #!11 models

> show #!11 models

> hide #!12 models

> show #!12 models

> hide #!12 models

> show #!12 models

> hide #!12 models

> show #!12 models

> hide #14 models

> show #14 models

> hide #13 models

> show #13 models

> hide #13 models

> show #13 models

> hide #13 models

> show #13 models

> hide #13 models

> show #13 models

> hide #14 models

> hide #13 models

> hide #!12 models

> hide #!11 models

> open "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_dierestlichen.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/6skf_rp_dierestlichen.pdb  
---  
warnings | CONECT record for nonexistent atom: 43265  
Start residue of secondary structure not found: HELIX 1 1 LEU A 8 ALA A 14 1 7  
Start residue of secondary structure not found: HELIX 2 2 LYS A 25 MET A 27 1
3  
Start residue of secondary structure not found: HELIX 3 3 VAL A 44 ALA A 59 1
16  
Start residue of secondary structure not found: HELIX 4 4 GLN A 76 THR A 86 1
11  
Start residue of secondary structure not found: HELIX 5 5 HIS A 123 ILE A 132
1 10  
105 messages similar to the above omitted  
Bad residue range for secondary structure: HELIX 111 111 ILE B 6 LYS B 12 1 7  
Start residue of secondary structure not found: HELIX 112 112 SER B 21 ARG B
23 1 3  
Start residue of secondary structure not found: HELIX 113 113 LEU B 99 LYS B
101 1 3  
End residue of secondary structure not found: HELIX 114 114 GLY B 176 ALA B
184 1 9  
Start residue of secondary structure not found: HELIX 115 115 ALA B 199 ASN B
201 1 3  
Start residue of secondary structure not found: HELIX 116 116 VAL B 108 ARG B
110 1 3  
End residue of secondary structure not found: HELIX 117 117 GLU B 121 VAL B
135 1 15  
Start residue of secondary structure not found: HELIX 118 118 PRO B 151 LEU B
153 1 3  
Start residue of secondary structure not found: HELIX 119 119 LYS B 173 LYS B
182 1 10  
Start residue of secondary structure not found: HELIX 120 120 ALA B 189 GLU B
191 1 3  
Start residue of secondary structure not found: HELIX 121 121 PRO B 213 TRP B
217 1 5  
Start residue of secondary structure not found: HELIX 122 122 HIS B 224 ALA B
229 1 6  
1 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 125 125 LYS B 107 THR B
121 1 15  
End residue of secondary structure not found: HELIX 126 126 TYR B 124 ARG B
130 1 7  
Start residue of secondary structure not found: HELIX 127 127 ASP B 146 LYS B
150 1 5  
Start residue of secondary structure not found: HELIX 128 128 THR B 154 LEU B
164 1 11  
Start residue of secondary structure not found: HELIX 129 129 TRP B 167 LYS B
175 1 9  
Start residue of secondary structure not found: HELIX 130 130 LYS B 183 LYS B
185 1 3  
Start residue of secondary structure not found: HELIX 131 131 ILE B 207 ALA B
211 1 5  
3 messages similar to the above omitted  
Bad residue range for secondary structure: HELIX 135 135 GLU B 6 ALA B 14 1 9  
End residue of secondary structure not found: HELIX 136 136 PRO B 16 ARG B 18
1 3  
Start residue of secondary structure not found: HELIX 137 137 ALA B 41 LEU B
48 1 8  
Start residue of secondary structure not found: HELIX 138 138 LYS B 83 ALA B
94 1 12  
End residue of secondary structure not found: HELIX 139 139 ALA B 101 ASN B
103 1 3  
Start residue of secondary structure not found: HELIX 140 140 PRO B 143 ALA B
148 1 6  
Start residue of secondary structure not found: HELIX 141 141 LYS B 165 GLU B
174 1 10  
End residue of secondary structure not found: HELIX 142 142 LYS B 62 THR B 83
1 22  
Start residue of secondary structure not found: HELIX 143 143 PHE B 113 GLY B
115 1 3  
Start residue of secondary structure not found: HELIX 144 144 LYS B 144 GLN B
156 1 13  
Start residue of secondary structure not found: HELIX 145 145 GLN B 13 ASP B
28 1 16  
Bad residue range for secondary structure: HELIX 147 147 GLU B 60 ILE B 62 1 3  
Start residue of secondary structure not found: HELIX 149 149 LYS B 83 ALA B
90 1 8  
End residue of secondary structure not found: HELIX 150 150 ARG B 108 MET B
122 1 15  
Start residue of secondary structure not found: HELIX 151 151 GLN B 13 ARG B
27 1 15  
End residue of secondary structure not found: HELIX 155 155 ARG B 108 MET B
122 1 15  
Start residue of secondary structure not found: HELIX 156 156 GLN B 59 ASN B
76 1 18  
End residue of secondary structure not found: HELIX 157 157 ARG B 79 ASN B 81
1 3  
Start residue of secondary structure not found: HELIX 158 158 LEU B 142 LYS B
155 1 14  
Start residue of secondary structure not found: HELIX 159 159 THR B 173 LEU B
177 1 5  
Bad residue range for secondary structure: HELIX 173 173 VAL B 8 LEU B 11 1 4  
Bad residue range for secondary structure: HELIX 184 184 PRO B 138 LYS B 141 1
4  
Bad residue range for secondary structure: HELIX 203 203 LEU B 4 LEU B 15 1 12  
Bad residue range for secondary structure: HELIX 204 204 ILE B 29 ALA B 33 1 5  
Bad residue range for secondary structure: HELIX 206 206 ALA B 61 LYS B 72 1
12  
17 messages similar to the above omitted  
Start residue of secondary structure not found: SHEET 1 1 1 ILE A 31 VAL A 34
0  
Start residue of secondary structure not found: SHEET 2 2 1 TYR A 40 LEU A 42
0  
Start residue of secondary structure not found: SHEET 3 3 1 LEU A 67 VAL A 69
0  
Start residue of secondary structure not found: SHEET 4 4 1 LYS A 89 ILE A 91
0  
Start residue of secondary structure not found: SHEET 5 5 1 LEU A 114 VAL A
116 0  
115 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 124 124 1 VAL B 139 GLN B
142 0  
End residue of secondary structure not found: SHEET 125 125 1 LEU B 148 PHE B
151 0  
Start residue of secondary structure not found: SHEET 126 126 1 ARG B 156 THR
B 158 0  
Start residue of secondary structure not found: SHEET 127 127 1 PHE B 41 ILE B
54 0  
End residue of secondary structure not found: SHEET 128 128 1 GLU B 65 GLU B
74 0  
End residue of secondary structure not found: SHEET 129 129 1 PHE B 79 GLN B
88 0  
End residue of secondary structure not found: SHEET 130 130 1 LEU B 93 TRP B
100 0  
Start residue of secondary structure not found: SHEET 131 131 1 ASP B 142 HIS
B 148 0  
Start residue of secondary structure not found: SHEET 132 132 1 VAL B 162 ALA
B 166 0  
Start residue of secondary structure not found: SHEET 133 133 1 LEU B 199 VAL
B 204 0  
Start residue of secondary structure not found: SHEET 134 134 1 GLY B 207 GLN
B 211 0  
Start residue of secondary structure not found: SHEET 135 135 1 GLY B 254 GLY
B 257 0  
7 messages similar to the above omitted  
Bad residue range for secondary structure: SHEET 143 143 1 LYS B 2 PHE B 6 0  
End residue of secondary structure not found: SHEET 144 144 1 PRO B 12 GLU B
17 0  
Start residue of secondary structure not found: SHEET 145 145 1 LEU B 142 VAL
B 144 0  
Start residue of secondary structure not found: SHEET 146 146 1 LEU B 198 VAL
B 201 0  
Start residue of secondary structure not found: SHEET 147 147 1 ASP B 218 THR
B 221 0  
Start residue of secondary structure not found: SHEET 148 148 1 ILE B 241 THR
B 243 0  
Bad residue range for secondary structure: SHEET 150 150 1 ILE B 54 ARG B 56 0  
End residue of secondary structure not found: SHEET 151 151 1 ALA B 74 LEU B
79 0  
Start residue of secondary structure not found: SHEET 152 152 1 PHE B 110 PHE
B 112 0  
Start residue of secondary structure not found: SHEET 153 153 1 MET B 134 LEU
B 140 0  
End residue of secondary structure not found: SHEET 155 155 1 GLU B 18 VAL B
21 0  
Start residue of secondary structure not found: SHEET 156 156 1 THR B 25 LYS B
29 0  
End residue of secondary structure not found: SHEET 160 160 1 PHE B 86 VAL B
93 0  
Start residue of secondary structure not found: SHEET 161 161 1 THR B 100 VAL
B 103 0  
Start residue of secondary structure not found: SHEET 162 162 1 GLU B 107 GLU
B 111 0  
Start residue of secondary structure not found: SHEET 163 163 1 ARG B 120 LYS
B 123 0  
Start residue of secondary structure not found: SHEET 164 164 1 VAL B 128 LYS
B 133 0  
Bad residue range for secondary structure: SHEET 168 168 1 LEU B 50 ALA B 54 0  
Bad residue range for secondary structure: SHEET 169 169 1 TYR B 77 VAL B 80 0  
Bad residue range for secondary structure: SHEET 170 170 1 SER B 98 ILE B 102
0  
Bad residue range for secondary structure: SHEET 172 172 1 LEU B 50 ALA B 54 0  
Bad residue range for secondary structure: SHEET 173 173 1 TYR B 77 VAL B 80 0  
2 messages similar to the above omitted  
Start residue of secondary structure not found: SHEET 176 176 1 TYR B 45 ALA B
51 0  
Bad residue range for secondary structure: SHEET 177 177 1 MET B 55 ARG B 58 0  
Start residue of secondary structure not found: SHEET 178 178 1 TYR B 82 ILE B
86 0  
Start residue of secondary structure not found: SHEET 179 179 1 GLN B 92 GLU B
96 0  
End residue of secondary structure not found: SHEET 180 180 1 LYS B 118 VAL B
126 0  
End residue of secondary structure not found: SHEET 181 181 1 LEU B 133 VAL B
137 0  
Start residue of secondary structure not found: SHEET 182 182 1 ALA B 160 ASP
B 166 0  
Bad residue range for secondary structure: SHEET 213 213 1 HIS B 44 VAL B 50 0  
Bad residue range for secondary structure: SHEET 214 214 1 LYS B 57 VAL B 60 0  
Bad residue range for secondary structure: SHEET 216 216 1 GLU B 47 ASN B 49 0  
Bad residue range for secondary structure: SHEET 219 219 1 VAL B 80 ALA B 83 0  
Bad residue range for secondary structure: SHEET 223 223 1 ILE B 50 LYS B 52 0  
17 messages similar to the above omitted  
  
Chain information for 6skf_rp_dierestlichen.pdb #15  
---  
Chain | Description  
B | No description available  
  

> color #15 #969696 transparency 0

> open "C:/Users/Gabriele Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L13.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L14.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L14e.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L14e_2nd_chain.pdb-coot-2.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L15.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L15e.pdb-coot-7.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L18.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L18Ae.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L18e.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L19e.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L21e.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L22.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L23.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L24.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L24e.pdb-coot-2.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L29.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L30.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L30e.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L31e.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L32e.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L34e.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L37Ae.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L37e.pdb-coot-1.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L39e.pdb-coot-0.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L40e.pdb-coot-5.pdb" "C:/Users/Gabriele
> Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
> Modell/Chimera_docked_L44e.pdb-coot-0.pdb"

Summary of feedback from opening C:/Users/Gabriele
Keller/PowerFolders/50S_Ribosome/Protokoll/Fertiges
Modell/Chimera_docked_L40e.pdb-coot-5.pdb  
---  
warnings | Cannot find LINK/SSBOND residue CYS (70 )  
Cannot find LINK/SSBOND residue CYS (70 )  
Cannot find LINK/SSBOND residue CYS (67 )  
Cannot find LINK/SSBOND residue CYS (70 )  
Cannot find LINK/SSBOND residue CYS (67 )  
7 messages similar to the above omitted  
  
Chimera_docked_L13.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL13_SACS2 P95991 50S
ribosomal protein L13 [more info...]  
  
Chain information for Chimera_docked_L13.pdb-coot-0.pdb #16  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L14.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL14_SACS2 Q9UX97 50S
ribosomal protein L14 [more info...]  
  
Chain information for Chimera_docked_L14.pdb-coot-1.pdb #17  
---  
Chain | Description  
L | No description available  
  
Chimera_docked_L14e.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL14E_SACS2 Q980C1 50S
ribosomal protein L14e [more info...]  
  
Chain information for Chimera_docked_L14e.pdb-coot-0.pdb #18  
---  
Chain | Description  
A | No description available  
  
Chain information for Chimera_docked_L14e_2nd_chain.pdb-coot-2.pdb #19  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L15.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL15_SACS2 Q9UX85 50S
ribosomal protein L15 [more info...]  
  
Chain information for Chimera_docked_L15.pdb-coot-1.pdb #20  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L15e.pdb-coot-7.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL15E_SACS2 Q9UXD0 50S
ribosomal protein L15e [more info...]  
  
Chain information for Chimera_docked_L15e.pdb-coot-7.pdb #21  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L18.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL18_SACS2 Q9UX88 50S
ribosomal protein L18 [more info...]  
  
Chain information for Chimera_docked_L18.pdb-coot-1.pdb #22  
---  
Chain | Description  
O | No description available  
  
Chimera_docked_L18Ae.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL18A_SACS2 P58222 50S
ribosomal protein L18Ae [more info...]  
  
Chain information for Chimera_docked_L18Ae.pdb-coot-0.pdb #23  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L18e.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL18E_SACS2 P95990 50S
ribosomal protein L18e [more info...]  
  
Chain information for Chimera_docked_L18e.pdb-coot-1.pdb #24  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L19e.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL19E_SACS2 Q9UX89 50S
ribosomal protein L19e [more info...]  
  
Chain information for Chimera_docked_L19e.pdb-coot-1.pdb #25  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L21e.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL21_SACS2 Q9UXE0 50S
ribosomal protein L21e [more info...]  
  
Chain information for Chimera_docked_L21e.pdb-coot-0.pdb #26  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L22.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL22_SACS2 Q9UXA2 50S
ribosomal protein L22 [more info...]  
  
Chain information for Chimera_docked_L22.pdb-coot-1.pdb #27  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L23.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL23_SACS2 Q97ZQ4 50S
ribosomal protein L23 [more info...]  
  
Chain information for Chimera_docked_L23.pdb-coot-1.pdb #28  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L24.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL24_SACS2 Q9UX95 50S
ribosomal protein L24 [more info...]  
  
Chain information for Chimera_docked_L24.pdb-coot-1.pdb #29  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L24e.pdb-coot-2.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL24E_SACS2 Q980Q6 50S
ribosomal protein L24e [more info...]  
  
Chain information for Chimera_docked_L24e.pdb-coot-2.pdb #30  
---  
Chain | Description  
F | No description available  
  
Chimera_docked_L29.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more
info...]  
  
Chain information for Chimera_docked_L29.pdb-coot-1.pdb #31  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L30.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL30_SACS2 Q9UX86 50S
ribosomal protein L30 [more info...]  
  
Chain information for Chimera_docked_L30.pdb-coot-0.pdb #32  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L30e.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL30E_SACS2 Q980R3 50S
ribosomal protein L30e [more info...]  
  
Chain information for Chimera_docked_L30e.pdb-coot-1.pdb #33  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L31e.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL31_SACS2 P58190 50S
ribosomal protein L31e [more info...]  
  
Chain information for Chimera_docked_L31e.pdb-coot-0.pdb #34  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L32e.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL32_SACS2 Q9UX90 50S
ribosomal protein L32e [more info...]  
  
Chain information for Chimera_docked_L32e.pdb-coot-0.pdb #35  
---  
Chain | Description  
Y | No description available  
  
Chimera_docked_L34e.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL34_SACS2 Q97ZQ6 50S
ribosomal protein L34e [more info...]  
  
Chain information for Chimera_docked_L34e.pdb-coot-0.pdb #36  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L37Ae.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL37A_SACS2 Q97ZQ3 50S
ribosomal protein L37Ae [more info...]  
  
Chain information for Chimera_docked_L37Ae.pdb-coot-0.pdb #37  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L37e.pdb-coot-1.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL37_SACS2 Q97ZQ1 50S
ribosomal protein L37e [more info...]  
  
Chain information for Chimera_docked_L37e.pdb-coot-1.pdb #38  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L39e.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) RL39_SACS2 Q980F9 50S
ribosomal protein L39e [more info...]  
  
Chain information for Chimera_docked_L39e.pdb-coot-0.pdb #39  
---  
Chain | Description  
A | No description available  
  
Chimera_docked_L40e.pdb-coot-5.pdb title:  
Structure and biochemical studies of the recombination mediator protein recr
In recfor pathway [more info...]  
  
Chain information for Chimera_docked_L40e.pdb-coot-5.pdb #40  
---  
Chain | Description | UniProt  
G | No description available | RECR_THETN  
  
Non-standard residues in Chimera_docked_L40e.pdb-coot-5.pdb #40  
---  
ZN — zinc ion  
  
Chimera_docked_L44e.pdb-coot-0.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) Q97Z81_SACS2 Q97Z81 50S
ribosomal protein L44e [more info...]  
  
Chain information for Chimera_docked_L44e.pdb-coot-0.pdb #41  
---  
Chain | Description  
A | No description available  
  

> hide #41 models

> hide #!40 models

> hide #39 models

> hide #38 models

> hide #37 models

> hide #36 models

> hide #35 models

> hide #34 models

> hide #33 models

> hide #32 models

> hide #31 models

> hide #30 models

> hide #29 models

> hide #28 models

> hide #27 models

> hide #26 models

> hide #25 models

> hide #24 models

> hide #23 models

> hide #21 models

> hide #22 models

> hide #20 models

> hide #19 models

> select #15

22659 atoms, 22899 bonds, 3 pseudobonds, 2949 residues, 2 models selected  

> view sel

> ~select #15

Nothing selected  

> select #16

1117 atoms, 1132 bonds, 140 residues, 1 model selected  

> view sel

> select #17

1041 atoms, 1061 bonds, 134 residues, 1 model selected  

> view sel

> select #18

637 atoms, 641 bonds, 82 residues, 1 model selected  

> view sel

> show #19 models

> select #19

751 atoms, 757 bonds, 95 residues, 1 model selected  

> hide #18 models

> hide #17 models

> hide #16 models

> view sel

> show #20 models

> select #20

1100 atoms, 1117 bonds, 139 residues, 1 model selected  

> hide #19 models

> view sel

> show #21 models

> select #21

1798 atoms, 1843 bonds, 213 residues, 1 model selected  

> hide #20 models

> view sel

> ~select #21

Nothing selected  

> hide #21 models

> show #22 models

> select #22

1541 atoms, 1571 bonds, 193 residues, 1 model selected  

> view sel

> show #23 models

> select #23

660 atoms, 672 bonds, 78 residues, 1 model selected  

> hide #22 models

> view sel

> show #24 models

> select #24

947 atoms, 961 bonds, 119 residues, 1 model selected  

> hide #23 models

> view sel

> show #25 models

> select #25

1187 atoms, 1197 bonds, 147 residues, 1 model selected  

> hide #24 models

> view sel

> show #26 models

> select #26

776 atoms, 790 bonds, 97 residues, 1 model selected  

> hide #25 models

> view sel

> show #27 models

> select #27

1265 atoms, 1288 bonds, 155 residues, 1 model selected  

> hide #26 models

> view sel

> show #28 models

> select #28

642 atoms, 650 bonds, 81 residues, 1 model selected  

> hide #27 models

> view sel

> show #29 models

> select #29

924 atoms, 934 bonds, 116 residues, 1 model selected  

> hide #28 models

> view sel

> show #30 models

> select #30

490 atoms, 505 bonds, 59 residues, 1 model selected  

> hide #29 models

> view sel

> show #31 models

> select #31

546 atoms, 546 bonds, 67 residues, 1 model selected  

> hide #30 models

> view sel

> show #32 models

> select #32

1302 atoms, 1331 bonds, 157 residues, 1 model selected  

> hide #31 models

> view sel

> show #33 models

> select #33

772 atoms, 783 bonds, 99 residues, 1 model selected  

> hide #32 models

> view sel

> show #34 models

> select #34

681 atoms, 686 bonds, 84 residues, 1 model selected  

> hide #33 models

> view sel

> show #35 models

> select #35

1080 atoms, 1099 bonds, 130 residues, 1 model selected  

> view sel

> hide #34 models

> show #36 models

> select #36

698 atoms, 712 bonds, 86 residues, 1 model selected  

> hide #35 models

> view sel

> show #37 models

> select #37

568 atoms, 583 bonds, 70 residues, 1 model selected  

> hide #36 models

> view sel

> show #38 models

> select #38

500 atoms, 510 bonds, 61 residues, 1 model selected  

> hide #37 models

> view sel

> show #39 models

> select #39

425 atoms, 434 bonds, 50 residues, 1 model selected  

> hide #38 models

> view sel

> show #!40 models

> select #40

421 atoms, 422 bonds, 4 pseudobonds, 53 residues, 2 models selected  

> hide #39 models

> view sel

> hide #!40 models

> ~select #40

Nothing selected  

> show #41 models

> select #41

748 atoms, 758 bonds, 92 residues, 1 model selected  

> view sel

> show #38 models

> select #38

500 atoms, 510 bonds, 61 residues, 1 model selected  

> hide #41 models

> view sel

> show #17 models

> select #17

1041 atoms, 1061 bonds, 134 residues, 1 model selected  

> view sel

> show #!12 models

> hide #!15 models

> show #!11 models

> hide #17 models

> ~select #17

Nothing selected  

> select #12

1220 atoms, 1234 bonds, 1 pseudobond, 151 residues, 2 models selected  

> view sel

> hide #!12 models

> ~select #12

Nothing selected  

> hide #!11 models


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 27.20.100.8853
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel
Manufacturer: HP
Model: HP Laptop 17-by0xxx
OS: Microsoft Windows 10 Home (Build 19043)
Memory: 8,454,639,616
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i3-8130U CPU @ 2.20GHz
OSLanguage: de-DE
Locale: ('de_DE', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by pett, 4 years ago

Cc:	Tom Goddard added
Component:	Unassigned → Core
Owner:	set to pett
Platform:	→ all
Project:	→ ChimeraX
Status:	new → accepted
Summary:	ChimeraX bug report submission → Crash in event loop after hiding models

comment:2 by pett, 4 years ago

Resolution:	→ can't reproduce
Status:	accepted → closed

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