![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5845 closed defect (nonchimerax)
Graphics driver crash, macOS 11.6.1, Intel Iris Plus Graphics 640
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x0000000115254e00 (most recent call first):
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/platform/baseplatform.py", line 415 in __call__
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1215 in flush
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1624 in draw_xor_rectangle
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 310 in draw_xor_rectangle
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mouse_modes/std_modes.py", line 118 in _draw_drag_rectangle
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mouse_modes/std_modes.py", line 45 in mouse_drag
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mouse_modes/mousemodes.py", line 537 in _dispatch_mouse_event
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mouse_modes/mousemodes.py", line 638 in
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py", line 57 in event
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [1688]
Path: /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [1688]
User ID: 502
Date/Time: 2021-12-28 09:58:00.804 +0000
OS Version: macOS 11.6.1 (20G224)
Report Version: 12
Anonymous UUID: 7EAC39F2-F359-CFD4-244F-DCA698C2FF3C
Time Awake Since Boot: 3400 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2045b92e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff2048a5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff2036ebd5 raise + 26
3 libsystem_platform.dylib 0x00007fff204cfd7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff203df406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff463d8096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff463cf21c gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5fd02c89 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff463d072d gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ef93d3a IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ef93b4e intelSubmitCommands + 171
12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5f0b9978 gldPresentFramebufferData + 120
13 GLEngine 0x00007fff6bdb9fb3 glFlush_Exec + 104
14 libffi.dylib 0x00007fff2da6a8f5 ffi_call_unix64 + 85
15 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
16 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
17 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
18 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
19 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
20 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
21 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
22 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
23 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
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494 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
495 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
496 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
497 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
498 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
499 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
500 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
501 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
502 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
503 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
504 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
505 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
506 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
507 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
508 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
509 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
510 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
511 libffi.dylib 0x00007fff2da6a22d ffi_call_int + 699
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff2045e1d2 kevent64 + 10
1 QtWebEngineCore 0x000000011c712e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011c712cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011c6a6a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c6b0778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011c6b1150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011c6b0c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff2045e1d2 kevent64 + 10
1 QtWebEngineCore 0x000000011c712e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011c712cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001205dff06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6301db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c6b0778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011c6b1150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011c6b0cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20457cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2048ae49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011c6ffe18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000011d9b75f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c63020f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff2045e1d2 kevent64 + 10
1 QtWebEngineCore 0x000000011c712e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011c712cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6301db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6301db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6301db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6b076a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011c6b1150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011c6b0d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 13:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6301db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6301db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011c69b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011c65f7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011c6baa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2058249f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff20580b7f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff2057ff8c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22f0f23a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff204552ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045562c mach_msg + 60
2 QtWebEngineCore 0x000000011c708492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011c7082cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011c6b076a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011c6b0e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011c6b0c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000011c703e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 17:
0 libsystem_kernel.dylib 0x00007fff20457cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2048ae49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000010d492a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2048a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20486443 thread_start + 15
Thread 18:
0 libsystem_pthread.dylib 0x00007fff20486420 start_wqthread + 0
Thread 19:
0 libsystem_pthread.dylib 0x00007fff20486420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000115254e00 rcx: 0x00007fccce03fa58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007fccce03fa80 rsp: 0x00007fccce03fa58
r8: 0x00007fccce03ff48 r9: 0x831f0837f348eb41 r10: 0x0000000115254e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007fccd2a0b518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff2045b92e rfl: 0x0000000000000246 cr2: 0x000000014d8ad000
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
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0x10c7ce000 - 0x10ca32fff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
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0x10cbbc000 - 0x10cbbefff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x10cbc7000 - 0x10cbf8fff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
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0x10cc40000 - 0x10cc41fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
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0x110faa000 - 0x1110c1fff +libgfortran.3.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x11112f000 - 0x111165fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
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0x11319e000 - 0x1131adfff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x1131be000 - 0x1131d5fff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x1131e6000 - 0x1131f5fff +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x11320e000 - 0x113210fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
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0x7fff3ce79000 - 0x7fff3ce96fff com.apple.sidecar-core (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3ce97000 - 0x7fff3ce9afff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d2b2000 - 0x7fff3d2b8fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d429000 - 0x7fff3d440fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d5f3000 - 0x7fff3d5fefff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d613000 - 0x7fff3d625fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d626000 - 0x7fff3d629fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d642000 - 0x7fff3d7b1fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d7b2000 - 0x7fff3da0dfff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3da0e000 - 0x7fff3db24fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3db25000 - 0x7fff3db36fff com.apple.sidecar-ui (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e159000 - 0x7fff3e1bbfff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e1bc000 - 0x7fff3e1e1fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e42d000 - 0x7fff3e58ffff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e590000 - 0x7fff3e871fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e89d000 - 0x7fff3e9c9fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e9ca000 - 0x7fff3ee6afff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3ee6b000 - 0x7fff3ef53fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fc9a000 - 0x7fff3fd17fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40eb2000 - 0x7fff40eb5fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff412da000 - 0x7fff412f8fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff43887000 - 0x7fff43afafff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44363000 - 0x7fff44367fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45cde000 - 0x7fff45ce1fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff463cd000 - 0x7fff463d8fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47a03000 - 0x7fff47a43fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff48291000 - 0x7fff482acfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff51679000 - 0x7fff516a6fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff516a7000 - 0x7fff516c1fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff516c2000 - 0x7fff51761fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51951000 - 0x7fff51954fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53fe9000 - 0x7fff5401ffff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55616000 - 0x7fff55619fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5dd51000 - 0x7fff5e1e0fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.4 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5ef79000 - 0x7fff5ff60fff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.4 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff69712000 - 0x7fff69716fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bb5d000 - 0x7fff6bb63fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bb64000 - 0x7fff6bb68fff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bb69000 - 0x7fff6bb78fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bb79000 - 0x7fff6bb7bfff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bb7c000 - 0x7fff6bb84fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bb85000 - 0x7fff6bbb8fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bbb9000 - 0x7fff6bbf5fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bbf6000 - 0x7fff6bd89fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bd8a000 - 0x7fff6bd94fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bd95000 - 0x7fff6bf12fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bf13000 - 0x7fff6bf3bfff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d1d4000 - 0x7fff6d22cfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e2d6000 - 0x7fff6e2ddfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e2de000 - 0x7fff6e3c5fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f947000 - 0x7fff6f959fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73c5b000 - 0x7fff73c66fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73e7c000 - 0x7fff73e94fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77a0c000 - 0x7fff77a13fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=129.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=129.7G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 288K 20
CoreAnimation 88K 13
CoreGraphics 12K 2
CoreUI image data 3572K 27
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 129.0G 3517
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 128.4M 2 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 384K 4
STACK GUARD 76K 19
Stack 130.1M 20
Stack Guard 56.0M 1
VM_ALLOCATE 406.6M 91
__DATA 31.3M 606
__DATA_CONST 24.1M 273
__DATA_DIRTY 1274K 177
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 595.9M 160
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 594.1M 581
__UNICODE 588K 1
mapped file 717.9M 109
shared memory 2968K 25
=========== ======= =======
TOTAL 131.8G 5676
TOTAL, minus reserved VM space 131.6G 5676
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/u1772901/Dropbox/postdoc/Project
> NASP-H3/H4_H3_structures/AlphaFold_&_MD/Refold_strechedOut/MyMod_solv_ions.pdb"
Summary of feedback from opening /Users/u1772901/Dropbox/postdoc/Project
NASP-H3/H4_H3_structures/AlphaFold_&_MD/Refold_strechedOut/MyMod_solv_ions.pdb
---
warning | Ignored bad PDB record found on line 2
REMARK THIS IS A SIMULATION BOX
MyMod_solv_ions.pdb title:
Protein in water [more info...]
Chain information for MyMod_solv_ions.pdb #1
---
Chain | Description
? | No description available
Non-standard residues in MyMod_solv_ions.pdb #1
---
CL — (CL)
SOL — (SOL)
> ui tool show "Side View"
> select ::name="SOL"
8794215 atoms, 5862810 bonds, 2931405 residues, 1 model selected
> hide sel atoms
> show sel atoms
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/u1772901/Dropbox/postdoc/Project
> NASP-H3/H4_H3_structures/AlphaFold_&_MD/Fold_synthetic_3helix/H3_core_3helix.pdb"
Chain information for H3_core_3helix.pdb #1
---
Chain | Description
A | No description available
OpenGL version: 4.1 INTEL-16.5.4
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 447.40.12.0.0
SMC Version (system): 2.43f11
Software:
System Software Overview:
System Version: macOS 11.6.1 (20G224)
Kernel Version: Darwin 20.6.0
Time since boot: 13:50
Graphics/Displays:
Intel Iris Plus Graphics 640:
Chipset Model: Intel Iris Plus Graphics 640
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5926
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-Clipper: 0.17.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.3
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
MolecularDynamicsViewer: 1.2
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset drawing drag rectangle |
comment:2 by , 4 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset drawing drag rectangle → Graphics driver crash, macOS 11.6.1, Intel Iris Plus Graphics 640 |
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Apple graphics driver crash. Was using 132 Gbytes of memory with a 9 million atom structure open.