Crash updating volume drawings after models close

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00000e48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000d84 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000033b0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003de8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000018c0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002be0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001e48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bWindows fatal exception: icode 0xn8001010e\

lib\muWindows fatal exception: lcode 0xt8001010ei

prWindows fatal exception: ocode 0xc8001010ee

ssWindows fatal exception: icode 0xn8001010eg

\pWindows fatal exception: ocode 0xo8001010el

.pWindows fatal exception: ycode 0x"8001010e, line 

114 in Windows fatal exception: wcode 0xo8001010er

keWindows fatal exception: rcode 0x
8001010e  File 

"CWindows fatal exception: :code 0x\8001010eP

roWindows fatal exception: gcode 0xr8001010ea

m Windows fatal exception: Fcode 0xi8001010el

esWindows fatal exception: \code 0xC8001010eh

imerWindows fatal exception: acode 0xX8001010e 

1.Windows fatal exception: 3code 0x\8001010eb

inWindows fatal exception: \code 0xl8001010ei

b\Windows fatal exception: tcode 0xh8001010ere

adinWindows fatal exception: gcode 0x.8001010ep

y", line Windows fatal exception: 910code 0x in 8001010er

unWindows fatal exception: 
code 0x  File 8001010e"

C:\Windows fatal exception: Pcode 0xr8001010eo

grWindows fatal exception: acode 0xm 8001010eFWindows fatal exception: 

icode 0xl8001010eWindows fatal exception: e

code 0xs8001010eWindows fatal exception: 

code 0x\8001010eC

hWindows fatal exception: icode 0xm8001010ee

raWindows fatal exception: Xcode 0x 8001010e1

.Windows fatal exception: Windows fatal exception: 3code 0x\b8001010eicode 0xn8001010e\



libWindows fatal exception: \Windows fatal exception: tcode 0xh8001010ecode 0x

r8001010eeWindows fatal exception: a

code 0xdWindows fatal exception: iWindows fatal exception: code 0xncode 0x8001010e8001010e



gWindows fatal exception: .Windows fatal exception: pcode 0xy8001010e"code 0x8001010e

, line 8001010e

973Windows fatal exception: 

 in code 0x_8001010eb

oWindows fatal exception: oWindows fatal exception: Windows fatal exception: tcode 0xs8001010et

code 0xrWindows fatal exception: 8001010ecode 0xa8001010e

pcode 0x

_Windows fatal exception: iWindows fatal exception: ncode 0xn8001010e8001010ee



code 0xr8001010e


Windows fatal exception:   File code 0xWindows fatal exception: 8001010e"code 0xC

:8001010e\Windows fatal exception: P

code 0xr8001010eo

gWindows fatal exception: rWindows fatal exception: acode 0xWindows fatal exception: mcode 0x 8001010e8001010ecode 0x

F

8001010eWindows fatal exception: i

code 0xlWindows fatal exception: e8001010esWindows fatal exception: code 0xcode 0x

\8001010eWindows fatal exception: 

Ccode 0xh8001010eiWindows fatal exception: m

e8001010er

aXcode 0x 8001010e1

.3\Windows fatal exception: bcode 0xi8001010en

\lWindows fatal exception: icode 0xb8001010e\

threading.py", line 930 in _bootstrap

Thread 0x000010fc (most recent call first):
Windows fatal exception:   File code 0x"8001010eC

:\PWindows fatal exception: rcode 0xo8001010eg

raWindows fatal exception: mcode 0x 8001010eF

ilWindows fatal exception: ecode 0xs8001010e\

ChWindows fatal exception: icode 0xm8001010ee

raWindows fatal exception: Xcode 0x 8001010e1

.3Windows fatal exception: \code 0xb8001010ei

n\Windows fatal exception: lcode 0xi8001010eb

\mWindows fatal exception: ucode 0xl8001010et

ipWindows fatal exception: rcode 0xo8001010ec

esWindows fatal exception: scode 0xi8001010en

g\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002bc0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program FileWindows fatal exception: scode 0x\8001010eC


[many, many lines deleted]

Thread 0x00000d84 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000033b0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003de8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000018c0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002be0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001e48 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000010fc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002bc0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000043c4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004048 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000210c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000511c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005120 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005618 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005614 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002f18 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003b30 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004ce8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002f34 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\map\volume.py", line 4010 in _update_drawings
Windows fatal exception: access violation

===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 2567 fromDatabase emdb

Opened emdb 2567 as #1, grid size 192,192,192, pixel 3.3, shown at level 174,
step 1, values float32  

> cd C:\Users\Doulin\Documents\ChimeraBlender

Current working directory is: C:\Users\Doulin\Documents\ChimeraBlender  

> volume #1 level 62.43

> ui tool show "Segment Map"

Segmenting emdb 2567, density threshold 62.429531  
Showing 46 region surfaces  
339 watershed regions, grouped to 46 regions  
Showing emdb 2567.seg - 46 regions, 46 surfaces  

> ui mousemode right select

Drag select of 463, 245 of 12904 triangles, 431, 21 of 11844 triangles, 483,
349 of 12896 triangles, 438, 290 of 6848 triangles, 391, 159 of 6192
triangles, 418, 25 of 5688 triangles, 440, 100 of 5988 triangles, 334, 83 of
4284 triangles, 1 emdb 2567  

> select clear

Grouped 4 regions  
Grouped 3 regions  

> select clear

Grouped 5 regions  
Grouped 2 regions  
Drag select of 481, 5790 of 19132 triangles, 482, 9877 of 18880 triangles,
463, 3125 of 12904 triangles, 431, 687 of 11844 triangles, 430, 2208 of 10624
triangles, 483, 7160 of 12896 triangles, 458, 1633 of 8944 triangles, 484,
427, 342, 7581 of 7656 triangles, 486, 461, 485, 488, 487, 469, 476, 460, 474,
470, 459, 478, 468, 471, 477, 466, 467, 472, 479, 465, 473, 141, 439, 366, 1
emdb 2567  

> select clear

Drag select of 481, 8873 of 19132 triangles, 482, 11888 of 18880 triangles,
463, 5191 of 12904 triangles, 431, 2859 of 11844 triangles, 430, 3478 of 10624
triangles, 483, 8099 of 12896 triangles, 458, 3219 of 8944 triangles, 484,
427, 342, 486, 461, 485, 6260 of 7124 triangles, 488, 487, 469, 476, 460, 474,
470, 459, 478, 468, 471, 477, 466, 467, 472, 479, 465, 473, 141, 439, 3068 of
3308 triangles, 366, 1778 of 2420 triangles, 1 emdb 2567  
Grouped 34 regions  
Grouped 2 regions  

> color #2.2 #ffaaff transparency 0

> ui mousemode right rotate

> color #2.2 #ff557f transparency 0

> color #2.2 #ff007f transparency 0

> color #2.2 magenta transparency 0

> color #2.2 #ffaaff transparency 0

> color #2.2 magenta transparency 0

> color #2.2 #ff55ff transparency 0

> color #2.2 #55aaff transparency 0

> color #2.2 black transparency 0

> color #2.2 #787878 transparency 0

> color #2.2 #ff55ff transparency 0

> color #2.2 #ffaaff transparency 0

> color #2.1 #aaaaff transparency 0

> lighting flat

> lighting soft

> graphics silhouettes false

> graphics silhouettes true

> set bgColor white

> graphics silhouettes false

> ui mousemode right select

> select clear

> ui mousemode right rotate

> save emdb_2567.png 3840 2160

Expected a keyword  

> save emdb_2567.png width 3840 height 2160

> save C:/Users/Doulin/Documents/ChimeraBlender/A_tum/AuTim.cxs includeMaps
> true

> close

> open 7611,7612 fromDatabase emdb

Fetching url
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-7611,7612/map/emd_7611,7612.map.gz
failed:   

> open 7611 7612 fromDatabase emdb

Opened emdb 7611 as #1, grid size 144,144,144, pixel 5, shown at level 3.22,
step 1, values float32  
Opened emdb 7612 as #2, grid size 80,80,60, pixel 5, shown at level 0.219,
step 1, values float32  

> ui mousemode right translate

> select #2

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models #2,1,0,0,1.9099,0,1,0,-10.164,0,0,1,-167

> volume #1 level 2.071

> volume #2 level 0.0782

> view matrix models #2,1,0,0,4.5245,0,1,0,-8.7089,0,0,1,-167.6

> volume #1 level 1.774

> view matrix models #2,1,0,0,0.8777,0,1,0,-10.721,0,0,1,-173.57

> view matrix models #2,1,0,0,1.2184,0,1,0,1.2084,0,0,1,-173.51

> ui tool show "Hide Dust"

> surface dust #1 size 73.24

> ~select #2

Nothing selected  

> surface dust #1 size 73.24

> surface dust #1 size 252.39

> select #1

2 models selected  

> ~select #1

Nothing selected  

> select #2

2 models selected  

> surface dust #1 size 252.39

> ~select #2

Nothing selected  

> ui tool show "Segment Map"

Segmenting emdb 7611, density threshold 1.774484  
Only showing 60 of 93 regions.  
Showing 60 of 93 region surfaces  
431 watershed regions, grouped to 93 regions  
Showing emdb 7611.seg - 93 regions, 60 surfaces  

> hide #!1 models

> hide #!2 models

> close #3

> show #!1 models

> volume #1 level 1.103

> volume #1 level 0.82

> volume #1 level 0.9614

> volume #1 level 0.7846

Segmenting emdb 7611, density threshold 0.784641  
Only showing 60 of 130 regions.  
Showing 60 of 130 region surfaces  
611 watershed regions, grouped to 130 regions  
Showing emdb 7611.seg - 130 regions, 60 surfaces  

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> show #!2 models

> hide #!2 models

> close #3

Segmenting emdb 7611, density threshold 0.784641  
Showing 130 region surfaces  
611 watershed regions, grouped to 130 regions  
Showing emdb 7611.seg - 130 regions, 130 surfaces  

> ui mousemode right select

> select clear

Ungrouped to 3 regions  

> select clear

Ungrouped to 2 regions  

> select clear

Ungrouped to 3 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 2 regions  
Ungrouped to 3 regions  

> select clear

Ungrouped to 4 regions  
Ungrouped to 6 regions  
Ungrouped to 2 regions  
Ungrouped to 3 regions  
Ungrouped to 2 regions  

> select clear

> hide sel

Grouped 4 regions  

> select clear

Grouped 3 regions  
Grouped 2 regions  

> select clear

Drag select of 389, 205 of 4768 triangles, 381, 140 of 3540 triangles, 380,
145 of 3564 triangles, 379, 124 of 3596 triangles, 386, 197 of 3512 triangles,
387, 160 of 3444 triangles, 385, 186 of 3420 triangles, 378, 138 of 3512
triangles, 377, 119 of 3256 triangles, 388, 74 of 3264 triangles, 376, 173 of
3288 triangles, 382, 113 of 3276 triangles, 384, 160 of 3152 triangles, 383,
159 of 3160 triangles, 1 emdb 7611  
Grouped 14 regions  
Grouped 5 regions  
Grouped 4 regions  
Grouped 2 regions  
Grouped 1 regions  

> select clear

Drag select of 764, 19144 of 27340 triangles, 770, 19911 of 24052 triangles,
766, 20601 of 23788 triangles, 765, 18434 of 24176 triangles, 769, 16972 of
22296 triangles, 763, 16686 of 21156 triangles, 768, 14066 of 21424 triangles,
762, 17908 of 22176 triangles, 772, 18715 of 22044 triangles, 761, 16982 of
21684 triangles, 773, 14563 of 21192 triangles, 771, 17523 of 21312 triangles,
767, 11961 of 16868 triangles, 874, 1911 of 3548 triangles, 876, 534 of 3212
triangles, 881, 1049 of 2980 triangles, 878, 1215 of 3000 triangles, 785, 1290
of 2000 triangles, 873, 987 of 2436 triangles, 875, 1552 of 2364 triangles,
872, 1701 of 2748 triangles, 727, 1064 of 1788 triangles, 27, 884 of 1612
triangles, 34, 747 of 1572 triangles, 22, 801 of 1360 triangles, 32, 626 of
1304 triangles, 31, 623 of 1300 triangles, 33, 606 of 1284 triangles, 12, 736
of 1192 triangles, 893, 3567 of 14960 triangles, 1 emdb 7611  

> select clear

Grouped 5 regions  
Grouped 4 regions  
Grouped 5 regions  
Grouped 2 regions  

> hide sel

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!2 models

> hide #!2 models

Drag select of 874, 2850 of 3548 triangles, 876, 881, 878, 2708 of 3000
triangles, 785, 873, 875, 872, 727, 27, 34, 22, 32, 31, 33, 12, 6, 3, 7, 1, 5,
8, 4, 2  
Grouped 24 regions  

> hide sel

Drag select of 709, 40 of 6256 triangles, 887, 25 of 71620 triangles, 888, 59
of 25268 triangles, 893, 35 of 14960 triangles  
Grouped 19 regions  
Grouped 9 regions  

> select clear

Grouped 2 regions  

> select clear

Ungrouped to 2 regions  
Ungrouped to 9 regions  
Ungrouped to 25 regions  
Ungrouped to 74 regions  

> select clear

Drag select of 875, 4, 325 of 376 triangles, 876, 878, 2762 of 3000 triangles,
3, 682 of 900 triangles, 881, 2765 of 2980 triangles, 12, 8, 340 of 384
triangles, 6, 676 of 896 triangles, 31, 1081 of 1300 triangles, 33, 1061 of
1284 triangles, 5, 339 of 384 triangles, 22, 1138 of 1360 triangles, 34, 1319
of 1572 triangles, 727, 1485 of 1788 triangles, 2, 324 of 376 triangles, 27,
1378 of 1612 triangles, 7, 645 of 864 triangles, 1, 672 of 888 triangles, 785,
1580 of 2000 triangles, 32, 1118 of 1304 triangles, 872, 2481 of 2748
triangles, 873, 874, 3308 of 3548 triangles  
Grouped 24 regions  

> hide sel

Drag select of 382, 409 of 3276 triangles, 383, 349 of 3160 triangles, 384,
351 of 3152 triangles, 385, 421 of 3420 triangles, 386, 393 of 3512 triangles,
376, 437 of 3288 triangles, 387, 422 of 3444 triangles, 377, 396 of 3256
triangles, 388, 370 of 3264 triangles, 378, 376 of 3512 triangles, 389, 376 of
4768 triangles, 379, 456 of 3596 triangles, 380, 431 of 3564 triangles, 381,
381 of 3540 triangles  
Grouped 14 regions  
Grouped 2 regions  
Grouped 5 regions  
Grouped 7 regions  
Grouped 6 regions  
Grouped 3 regions  
Grouped 4 regions  
Grouped 8 regions  

> select clear

Grouped 2 regions  
Grouped 1 regions  
Grouped 2 regions  

> select clear

Grouped 1 regions  

> select clear

Grouped 2 regions  
Grouped 4 regions  
Grouped 6 regions  
Grouped 2 regions  
Grouped 7 regions  
Grouped 9 regions  
Grouped 2 regions  

> select clear

Grouped 2 regions  

> select clear

Grouped 2 regions  

> select clear

> color #3.2 #00aaff transparency 0

> select clear

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!2 models

Segmenting emdb 7612, density threshold 0.078200  
Showing 31 region surfaces  
141 watershed regions, grouped to 31 regions  
Showing emdb 7612.seg - 31 regions, 31 surfaces  

> hide #!2 models

> undo

> show #!2 models

> show #!1 models

> hide #!3 models

> show #!3 models

> hide #!3 models

Segmenting emdb 7611, density threshold 0.784641  
Showing 130 region surfaces  
611 watershed regions, grouped to 130 regions  
Showing emdb 7611.seg - 130 regions, 130 surfaces  
Ungrouped to 2 regions  
Ungrouped to 4 regions  
Ungrouped to 3 regions  
Ungrouped to 4 regions  
Ungrouped to 8 regions  
Ungrouped to 2 regions  
Ungrouped to 3 regions  
Ungrouped to 7 regions  
Ungrouped to 2 regions  
Ungrouped to 3 regions  
Ungrouped to 4 regions  
Ungrouped to 2 regions  
Grouped 14 regions  

> hide sel

> hide #!2 models

Drag select of 389, 646 of 4768 triangles, 381, 595 of 3540 triangles, 380,
683 of 3564 triangles, 379, 696 of 3596 triangles, 386, 586 of 3512 triangles,
387, 623 of 3444 triangles, 385, 636 of 3420 triangles, 378, 628 of 3512
triangles, 377, 573 of 3256 triangles, 388, 558 of 3264 triangles, 376, 639 of
3288 triangles, 382, 563 of 3276 triangles, 384, 531 of 3152 triangles, 383,
595 of 3160 triangles, 1 emdb 7611  
Grouped 14 regions  
Grouped 4 regions  
Grouped 3 regions  
Grouped 7 regions  
Grouped 2 regions  
Grouped 5 regions  

> select clear

Ungrouped to 5 regions  

> select clear

Drag select of 740, 76 of 16868 triangles, 853, 180 of 2980 triangles, 844,
271 of 2436 triangles, 852, 6 of 2748 triangles, 732, 195 of 27340 triangles,
1 emdb 7611  
Grouped 7 regions  
Grouped 3 regions  
Grouped 5 regions  
Grouped 3 regions  
Grouped 2 regions  

> hide sel

> close #2

> hide #!1 models

Drag select of 851, 847, 848, 2968 of 3000 triangles, 734, 845, 615, 27, 1573
of 1612 triangles, 34, 1401 of 1572 triangles, 22, 32, 1237 of 1304 triangles,
31, 1153 of 1300 triangles, 33, 1129 of 1284 triangles, 12, 6, 3, 7, 1, 4, 2,
5, 8  

> hide sel

Grouped 3 regions  
Grouped 2 regions  
Grouped 5 regions  
Grouped 2 regions  
Grouped 3 regions  
Grouped 6 regions  
Grouped 9 regions  
Grouped 2 regions  

> select clear

Grouped 2 regions  

> ui mousemode right translate

> ui mousemode right select

> select clear

Grouped 5 regions  
Grouped 8 regions  

> select clear

Grouped 9 regions  

> select clear

Grouped 5 regions  

> select clear

Grouped 4 regions  
Grouped 2 regions  

> select clear

Grouped 12 regions  
Grouped 4 regions  

> select clear

Grouped 2 regions  

> select clear

> ui mousemode right rotate

> save emdb_7611.mrc

> save
> C:/Users/Doulin/Documents/ChimeraBlender/L_pneumophila/emdb_7611_segmented.cxs

> close

> open C:\Users\Doulin\Documents\ChimeraBlender\emdb_7611.mrc format mrc

Opened emdb_7611.mrc as #1, grid size 144,144,144, pixel 5, shown at level
3.22, step 1, values float32  

> volume #1 level 2.187

> close

> open
> C:\Users\Doulin\Documents\ChimeraBlender\L_pneumophila\emdb_7611_segmented.cxs
> format session

Opened emdb 7611 as #1, grid size 144,144,144, pixel 5, shown at level 0.785,
step 1, values float32  
opened ChimeraX session  
Showing emdb 7611.seg - 40 regions, 40 surfaces  

> ui mousemode right select

> hide sel

Drag select of 1, 2, 3, 4, 5, 6, 7, 8, 12, 22, 27, 31, 32, 33, 34, 615, 734,
845, 847, 848, 851  

> hide sel

> hide #!3 models

> show #!3 models

> select #3

41 models selected  

> ~select #3

Nothing selected  

> save emdb_7611.mrc

> open C:/Users/Doulin/Documents/ChimeraBlender/emdb_7611.mrc

Opened emdb_7611.mrc as #2, grid size 144,144,144, pixel 5, shown at level
3.22, step 1, values float32  

> hide #!3 models

> hide #!2 models

> show #!2 models

> volume #2 level 0.364

> close #2

> show #!3 models

> save emdb_7611.cmap

> open C:/Users/Doulin/Documents/ChimeraBlender/emdb_7611.cmap

Opened emdb_7611.cmap as #2, grid size 144,144,144, pixel 5, shown at level
3.22, step 1, values float32  

> hide #!3 models

> volume #2 level 0.7079

> close #2

> show #!3 models

> ui tool show "Segment Map"

Please select one ore more regions to save to .mrc file  
Drag select of 479, 480, 485, 487, 489, 490, 491, 493, 503, 692, 695, 786,
846, 884, 888, 899, 913  
Saving 17 regions to mrc file...  
Opened emdb 7611_17_regions.mrc as #2, grid size 148,148,75, pixel 5, shown at
step 1, values float32  
Wrote emdb 7611_17_regions.mrc  

> open "C:/Users/Doulin/Documents/ChimeraBlender/emdb 7611_17_regions.mrc"

Opened emdb 7611_17_regions.mrc as #4, grid size 148,148,75, pixel 5, shown at
level 3.66, step 1, values float32  

> hide #!4 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> show #!4 models

> show #!1 models

> close #4

> close #2

> close #1

> show #!3 models

> hide #!3 models

> show #!3 models

> close

> open 7612 fromDatabase emdb

Opened emdb 7612 as #1, grid size 80,80,60, pixel 5, shown at level 0.219,
step 1, values float32  

> open 7611 fromDatabase emdb

Opened emdb 7611 as #2, grid size 144,144,144, pixel 5, shown at level 3.22,
step 1, values float32  

> ui mousemode right "translate selected models"

> select #2

2 models selected  

> view matrix models #2,1,0,0,3.5652,0,1,0,5.9292,0,0,1,73.94

> ~select #2

Nothing selected  

> select #1

2 models selected  

> view matrix models #1,1,0,0,-4.5759,0,1,0,4.9417,0,0,1,-127.76

> volume #1 level 0.09847

> volume #2 level 0.7423

> volume #2 level 0.785

> view matrix models #1,1,0,0,-15.047,0,1,0,-2.1685,0,0,1,-114.21

> volume #1 level 0.09438

> volume #1 level 0.07185

> view matrix models #1,1,0,0,-12.055,0,1,0,-2.0802,0,0,1,-95.8

> view matrix models #1,1,0,0,1.2001,0,1,0,-4.6057,0,0,1,-94.632

> view matrix models #1,1,0,0,4.2096,0,1,0,1.0553,0,0,1,-94.305

> view matrix models #1,1,0,0,4.6073,0,1,0,2.4882,0,0,1,-93.756

> hide #!1 models

> ~select #1

Nothing selected  

> show #!1 models

> select #1

2 models selected  

> hide #!2 models

> ui tool show "Segment Map"

Segmenting emdb 7612, density threshold 0.071854  
Showing 31 region surfaces  
141 watershed regions, grouped to 31 regions  
Showing emdb 7612.seg - 31 regions, 31 surfaces  

> hide #!1 models

> ui mousemode right select

Grouped 1 regions  
Grouped 4 regions  
Grouped 6 regions  
Grouped 4 regions  
Grouped 3 regions  
Grouped 2 regions  

> hide sle

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide sel

Ungrouped to 4 regions  
Ungrouped to 16 regions  
Ungrouped to 27 regions  
Ungrouped to 1 regions  
Ungrouped to 2 regions  
Grouped 7 regions  
Grouped 3 regions  
Grouped 5 regions  

> select clear

Grouped 5 regions  
Grouped 3 regions  

> select clear

Grouped 4 regions  
Grouped 2 regions  

> select clear

Grouped 3 regions  
Grouped 2 regions  

> select clear

Grouped 2 regions  
Grouped 3 regions  

> select clear

Grouped 2 regions  

> select clear

Drag select of 1, 407 of 1144 triangles, 6, 406 of 1140 triangles, 3, 395 of
1112 triangles, 4, 390 of 1112 triangles, 2, 394 of 1108 triangles, 5, 395 of
1112 triangles  
Grouped 7 regions  

> select clear

> ui mousemode right translate

> ui mousemode right rotate

> ui mousemode right select

Grouped 2 regions  

> select clear

Saving 4 regions to mrc file...  
Opened emdb 7612_4_regions.mrc as #4, grid size 84,84,50, pixel 5, shown at
step 1, values float32  
Wrote emdb 7612_4_regions.mrc  

QWindowsWindow::setGeometry: Unable to set geometry 2560x1742+0+34 (frame:
2582x1798-11-11) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY1".
Resulting geometry: 2560x1494+0+34 (frame: 2582x1550-11-11) margins: 11, 45,
11, 11 minimum size: 500x871 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=1022,1798 maxtrack=0,0)  

> close


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 497.29
OpenGL renderer: NVIDIA GeForce RTX 3070 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: LENOVO
Model: 82JQ
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 29,909,643,264
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5800H with Radeon Graphics         
OSLanguage: en-US
Locale: ('en_GB', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

[Tom Goddard]

Thread 0x00002f34 (most recent call first):

File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\map\volume.py", line 4010 in _update_drawings

Windows fatal exception: access violation

Last logged command was "close". And right before that was a window geometry error. Not clear how this happened, could they have drag and dropped a session? I think that would have logged a command. Maybe they disconnected an external display. Not enough info to debug.

QWindowsWindow::setGeometry: Unable to set geometry 2560x1742+0+34 (frame:
2582x1798-11-11) on QWidgetWindow/"MainWindowClassWindow" on "

.\DISPLAY1".
Resulting geometry: 2560x1494+0+34 (frame: 2582x1550-11-11) margins: 11, 45,
11, 11 minimum size: 500x871 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=1022,1798 maxtrack=0,0)

close