![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5960 closed defect (duplicate)
Qt crash during exit
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [76943]
Path: /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [76943]
User ID: 136598669
Date/Time: 2022-01-18 15:40:25.655 +0100
OS Version: Mac OS X 10.15.7 (19H1419)
Report Version: 12
Anonymous UUID: 2C0363B2-3B13-A3CD-DA26-CCF16D824886
Sleep/Wake UUID: CAA9A008-E704-44AD-BE84-0544C2789B81
Time Awake Since Boot: 1700000 seconds
Time Since Wake: 790 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00007fa8567d34e0
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x7fa8567d34e0:
MALLOC_LARGE 00007fa8567a9000-00007fa8567c9000 [ 128K] rw-/rwx SM=PRV
-->
MALLOC_TINY 00007fa856800000-00007fa856900000 [ 1024K] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6ebb833a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6ec78e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6eacf93e raise + 26
3 libsystem_platform.dylib 0x00007fff6ec6d5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtCore.abi3.so 0x000000011cbf028c cleanup_on_exit(_object*, _object*) + 12
6 org.python.python 0x000000010f8447f6 cfunction_vectorcall_NOARGS + 214
7 org.python.python 0x000000010f807dad PyVectorcall_Call + 109
8 org.python.python 0x000000010f971b91 atexit_callfuncs + 113
9 org.python.python 0x000000010f917bcf Py_FinalizeEx + 79
10 org.python.python 0x000000010f93967b Py_RunMain + 1659
11 org.python.python 0x000000010f939bdf pymain_main + 223
12 org.python.python 0x000000010f939aeb Py_Main + 43
13 edu.ucsf.cgl.ChimeraX 0x000000010f7dbdc8 main + 120
14 libdyld.dylib 0x00007fff6ea70cc9 start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff6ebbab96 kevent64 + 10
1 QtWebEngineCore 0x000000012318be6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000012318bcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000012311fa94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123129778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012312a150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000123129c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6ebbab96 kevent64 + 10
1 QtWebEngineCore 0x000000012318be6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000012318bcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000127058f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001231812cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001230a91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123129778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012312a150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000123129cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 6:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123129778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012312a150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000123129cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 7:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123129778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012312a150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000123129cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff6ebb4882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ec79425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000123178e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001244305f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001230a920f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6ebbab96 kevent64 + 10
1 QtWebEngineCore 0x000000012318be6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000012318bcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 11:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001231812cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001230a91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001231812cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001230a91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001231812cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012312976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000012312a150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x0000000123129d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 14:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001231812cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001230a91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012311462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001230d87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123133a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 15:
0 libsystem_kernel.dylib 0x00007fff6ebb4882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ec79425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000110e0727b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 16:
0 libsystem_kernel.dylib 0x00007fff6ebb4882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ec79425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000110e0727b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 17:
0 libsystem_kernel.dylib 0x00007fff6ebb4882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ec79425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000110e0727b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 18:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff347bf2b7 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff347bdd71 __CFRunLoopRun + 1329
4 com.apple.CoreFoundation 0x00007fff347bd1e3 CFRunLoopRunSpecific + 466
5 com.apple.AppKit 0x00007fff31bc2ea4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001231812cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012312976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000123129e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x0000000123129c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 20:
0 libsystem_pthread.dylib 0x00007fff6ec74b68 start_wqthread + 0
Thread 21:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123129778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000123129e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x0000000123129c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6ec74b68 start_wqthread + 0
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6ebb1dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ebb2170 mach_msg + 60
2 QtWebEngineCore 0x0000000123181492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123129778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000123129e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x0000000123129cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012317ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff6ec79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ec74b8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001105f6dc0 rcx: 0x00007fa84b64da58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fa84b64da80 rsp: 0x00007fa84b64da58
r8: 0x00007fa84b64df48 r9: 0x9ba3ea932dacbe1f r10: 0x00000001105f6dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000a4e r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6ebb833a rfl: 0x0000000000000246 cr2: 0x000000010fa566c4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x10f7db000 - 0x10f7dbff3 +edu.ucsf.cgl.ChimeraX (1.2.5 - 1.2.5.0) /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
0x10f7e7000 - 0x10fa1dff7 +org.python.python (3.8.8, [c] 2001-2019 Python Software Foundation. - 3.8.8) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/Python
0x10fb75000 - 0x10fb77ff7 +_heapq.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_heapq.cpython-38-darwin.so
0x10fb7f000 - 0x10fb84ff7 +zlib.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/zlib.cpython-38-darwin.so
0x10fb8e000 - 0x10fb90ff7 +_bz2.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bz2.cpython-38-darwin.so
0x10fb99000 - 0x10fbcafff +_lzma.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_lzma.cpython-38-darwin.so
0x10fbd9000 - 0x10fbdaff7 +grp.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/grp.cpython-38-darwin.so
0x10fbe2000 - 0x10fbeafff +math.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/math.cpython-38-darwin.so
0x10fbf6000 - 0x10fbf7ff7 +_bisect.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bisect.cpython-38-darwin.so
0x10fbff000 - 0x10fc03ff7 +_sha512.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha512.cpython-38-darwin.so
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0x7fff6ec8e000 - 0x7fff6eca4ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff6eca6000 - 0x7fff6ecabff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6ecac000 - 0x7fff6ece1ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 2064609
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 440K 2
CG image 88K 16
CoreAnimation 56K 11
CoreGraphics 8K 1
CoreImage 8K 2
CoreUI image data 1184K 19
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 516.1M 472
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 1504K 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 8K 1
OpenGL GLSL 384K 4
STACK GUARD 92K 23
Stack 147.2M 24
Stack Guard 56.0M 1
VM_ALLOCATE 134.0M 102
__DATA 61.7M 536
__DATA_CONST 36K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 479.2M 132
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 536.8M 498
__UNICODE 564K 1
mapped file 392.4M 50
shared memory 676K 23
=========== ======= =======
TOTAL 2.7G 1951
TOTAL, minus reserved VM space 2.3G 1951
System Profile:
Network Service: Apple USB Ethernet Adapter, Ethernet, en6
Thunderbolt Bus: MacBook Pro, Apple Inc., 23.4
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D5434314753364D465238432D50422020
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D5434314753364D465238432D50422020
USB Device: USB 3.0 Bus
USB Device: Microsoft 3-Button Mouse with IntelliEye(TM)
USB Device: Apple USB Ethernet Adapter
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: Hub
USB Device: Apple Internal Keyboard / Trackpad
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: FaceTime HD Camera (Built-in)
Serial ATA Device: APPLE SSD SM768E, 751,28 GB
Model: MacBookPro10,1, BootROM 422.0.0.0.0, 4 processors, Quad-Core Intel Core i7, 2,6 GHz, 16 GB, SMC 2.3f36
Graphics: kHW_IntelHD4000Item, Intel HD Graphics 4000, spdisplays_builtin
Graphics: kHW_NVidiaGeForceGT650MItem, NVIDIA GeForce GT 650M, spdisplays_pcie_device, 1 GB
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xEF), Broadcom BCM43xx 1.0 (7.21.190.33 AirPortDriverBrcm4360-1601.1)
Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/deys/Desktop/putLIsoGstr/RealSpaceRefine_234/newshuffle_real_space_refined_233-coot-0_real_space_refined_234.pdb
Chain information for
newshuffle_real_space_refined_233-coot-0_real_space_refined_234.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
N | No description available
T | No description available
OpenGL version: 4.1 NVIDIA-14.0.32 355.11.11.10.10.143
OpenGL renderer: NVIDIA GeForce GT 650M OpenGL Engine
OpenGL vendor: NVIDIA CorporationHardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro10,1
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2,6 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 422.0.0.0.0
SMC Version (system): 2.3f36
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1419)
Kernel Version: Darwin 19.6.0
Time since boot: 55 days 21:38
Graphics/Displays:
Intel HD Graphics 4000:
Chipset Model: Intel HD Graphics 4000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0166
Revision ID: 0x0009
Automatic Graphics Switching: Supported
gMux Version: 3.2.19 [3.2.8]
Metal: Supported, feature set macOS GPUFamily1 v4
NVIDIA GeForce GT 650M:
Chipset Model: NVIDIA GeForce GT 650M
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 1 GB
Vendor: NVIDIA (0x10de)
Device ID: 0x0fd5
Revision ID: 0x00a2
ROM Revision: 3688
Automatic Graphics Switching: Supported
gMux Version: 3.2.19 [3.2.8]
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Mirror: On
Mirror Status: Hardware Mirror
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
ASUS PB278:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60 Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: GCLMTF018797
Main Display: Yes
Mirror: On
Mirror Status: Master Mirror
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Qt crash during exit |
comment:2 by , 4 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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