![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5983 closed defect (duplicate)
various errors
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | Eric Pettersen | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19041
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/Isolde_B_gj1.pdb"
Chain information for Isolde_B_gj1.pdb #1
---
Chain | Description
B | No description available
> set bgColor white
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/denmod32_map.ccp4"
Opened denmod32_map.ccp4 as #2, grid size 134,154,163, pixel 1.3,1.3,1.3,
shown at level 0.314, step 1, values float32
> addh
Summary of feedback from adding hydrogens to Isolde_B_gj1.pdb #1
---
notes | No usable SEQRES records for Isolde_B_gj1.pdb (#1) chain B; guessing
termini instead
Chain-initial residues that are actual N termini: /B ASN 4
Chain-initial residues that are not actual N termini: /B ASP 210
Chain-final residues that are actual C termini: /B GLN 428
Chain-final residues that are not actual C termini: /B TYR 180
264 hydrogen bonds
Adding 'H' to /B ASP 210
2998 hydrogens added
> hide HC
> clipper associate #2 toModel #1
Opened denmod32_map.ccp4 as #1.1.1.1, grid size 134,154,163, pixel
1.3,1.3,1.3, shown at level 0.255, step 1, values float32
Chain information for Isolde_B_gj1.pdb
---
Chain | Description
1.2/B | No description available
> isolde start
> set selectionWidth 4
Done loading forcefield
> select #1
6022 atoms, 6079 bonds, 1 pseudobond, 396 residues, 13 models selected
ISOLDE: started sim
> select clear
No rotamer preview selected! Ignoring command.
ISOLDE: paused sim
ISOLDE: resumed sim
No rotamer preview selected! Ignoring command.
> select clear
ISOLDE: paused sim
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2158, in _apply_backrub
apply_backrub(self, mdff_mgr, res)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 410, in
apply_backrub
b = Backrub(r, mdff_p, clash_weight=clash_weight, map_weight=map_weight)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 81, in __init__
raise TypeError('Backrub requires N- and C-terminal flanking residues to be
present!')
TypeError: Backrub requires N- and C-terminal flanking residues to be present!
Error processing trigger "sim paused":
TypeError: Backrub requires N- and C-terminal flanking residues to be present!
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 81, in __init__
raise TypeError('Backrub requires N- and C-terminal flanking residues to be
present!')
See log for complete Python traceback.
> select #1
6022 atoms, 6079 bonds, 1 pseudobond, 396 residues, 19 models selected
> select clear
ISOLDE: resumed sim
ISOLDE: paused sim
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2158, in _apply_backrub
apply_backrub(self, mdff_mgr, res)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 410, in
apply_backrub
b = Backrub(r, mdff_p, clash_weight=clash_weight, map_weight=map_weight)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 81, in __init__
raise TypeError('Backrub requires N- and C-terminal flanking residues to be
present!')
TypeError: Backrub requires N- and C-terminal flanking residues to be present!
Error processing trigger "sim paused":
TypeError: Backrub requires N- and C-terminal flanking residues to be present!
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 81, in __init__
raise TypeError('Backrub requires N- and C-terminal flanking residues to be
present!')
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2158, in _apply_backrub
apply_backrub(self, mdff_mgr, res)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 410, in
apply_backrub
b = Backrub(r, mdff_p, clash_weight=clash_weight, map_weight=map_weight)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 81, in __init__
raise TypeError('Backrub requires N- and C-terminal flanking residues to be
present!')
TypeError: Backrub requires N- and C-terminal flanking residues to be present!
Error processing trigger "sim paused":
TypeError: Backrub requires N- and C-terminal flanking residues to be present!
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\refine\backrub_rotamer.py", line 81, in __init__
raise TypeError('Backrub requires N- and C-terminal flanking residues to be
present!')
See log for complete Python traceback.
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
No rotamer preview selected! Ignoring command.
> select #1
6022 atoms, 6079 bonds, 1 pseudobond, 396 residues, 19 models selected
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
> select clear
ISOLDE: paused sim
ISOLDE: resumed sim
> select clear
ISOLDE: stopped sim
> save "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/Isolde_B_gj2.pdb"
> relModel #1.2
> close #1.2
Deleting atomic symmetry model...
Deleting atomic symmetry model...
> close #1
Deleting atomic symmetry model...
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/Isolde_C_gj1.pdb"
Chain information for Isolde_C_gj1.pdb #1
---
Chain | Description
C | No description available
Chain information for Isolde_C_gj1.pdb
---
Chain | Description
1.2/C | No description available
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/denmod32_map.ccp4"
Opened denmod32_map.ccp4 as #2, grid size 134,154,163, pixel 1.3,1.3,1.3,
shown at level 0.314, step 1, values float32
> addh
Summary of feedback from adding hydrogens to Isolde_C_gj1.pdb #1.2
---
notes | No usable SEQRES records for Isolde_C_gj1.pdb (#1.2) chain C; guessing
termini instead
Chain-initial residues that are actual N termini: /C ASN 4
Chain-initial residues that are not actual N termini: /C ASP 210
Chain-final residues that are actual C termini: /C GLN 428
Chain-final residues that are not actual C termini: /C TYR 180
264 hydrogen bonds
Adding 'H' to /C ASP 210
2998 hydrogens added
> hide HC
> clipper associate #2 toModel #1
Opened denmod32_map.ccp4 as #1.1.1.1, grid size 134,154,163, pixel
1.3,1.3,1.3, shown at step 1, values float32
> select #1
6022 atoms, 6079 bonds, 1 pseudobond, 396 residues, 13 models selected
ISOLDE: started sim
> select clear
> select clear
> select clear
No rotamer preview selected! Ignoring command.
No rotamer preview selected! Ignoring command.
> select clear
> select clear
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
Unable to flip peptide bond after 50 rounds. Giving up.
> select clear
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
> select clear
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: paused sim
ISOLDE: resumed sim
ISOLDE: stopped sim
ISOLDE: started sim
ISOLDE: stopped sim
> select clear
ISOLDE: started sim
ISOLDE: stopped sim
ISOLDE: started sim
ISOLDE: stopped sim
> select #1
6022 atoms, 6079 bonds, 1 pseudobond, 396 residues, 19 models selected
> select clear
> save "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/isolde_C_gj2.pdb"
> relModel #1.2
ISOLDE: started sim
ISOLDE: stopped sim
> save "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/isolde_C_gj2.pdb"
> relModel #1.2
> close #1
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\validation\ramaplot.py", line 112, in
_selection_changed_cb
residues = self.current_model.residues
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 83, in get_attr
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None
AttributeError: Execution of 'Structure' object's 'residues' property raised
AttributeError
Error processing trigger "selection changed":
AttributeError: Execution of 'Structure' object's 'residues' property raised
AttributeError
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 83, in get_attr
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/Isolde_D_gj1.pdb"
Chain information for Isolde_D_gj1.pdb #1
---
Chain | Description
D | No description available
Chain information for Isolde_D_gj1.pdb
---
Chain | Description
1.2/D | No description available
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/denmod32_map.ccp4"
Opened denmod32_map.ccp4 as #2, grid size 134,154,163, pixel 1.3,1.3,1.3,
shown at level 0.314, step 1, values float32
> addh
Summary of feedback from adding hydrogens to Isolde_D_gj1.pdb #1.2
---
notes | No usable SEQRES records for Isolde_D_gj1.pdb (#1.2) chain D; guessing
termini instead
Chain-initial residues that are actual N termini: /D ASN 4
Chain-initial residues that are not actual N termini: /D ASP 210
Chain-final residues that are actual C termini: /D GLN 428
Chain-final residues that are not actual C termini: /D TYR 180
264 hydrogen bonds
Adding 'H' to /D ASP 210
2998 hydrogens added
> hide HC
> clipper associate #2 toModel #1
Opened denmod32_map.ccp4 as #1.1.1.1, grid size 134,154,163, pixel
1.3,1.3,1.3, shown at step 1, values float32
> isolde start
> set selectionWidth 4
Done loading forcefield
> select #!
Expected an objects specifier or a keyword
> select clear
> select #1
6022 atoms, 6079 bonds, 1 pseudobond, 396 residues, 13 models selected
ISOLDE: started sim
> select clear
Unable to flip peptide bond after 50 rounds. Giving up.
ISOLDE: stopped sim
> save "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/Isolde_D_gj2.pdb"
> relModel #1.2
> close #1
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\validation\ramaplot.py", line 112, in
_selection_changed_cb
residues = self.current_model.residues
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 61, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 57, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 83, in get_attr
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None
AttributeError: Execution of 'Structure' object's 'residues' property raised
AttributeError
Error processing trigger "selection changed":
AttributeError: Execution of 'Structure' object's 'residues' property raised
AttributeError
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\attributes.py", line 83, in get_attr
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
QWindowsWindow::setGeometry: Unable to set geometry 1920x1045+0+23 (frame:
1936x1084-8-8) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY1".
Resulting geometry: 1920x1017+0+23 (frame: 1936x1056-8-8) margins: 8, 31, 8, 8
minimum size: 458x1045 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=474,1084
maxtrack=0,0)
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/Isolde_E_gj1.pdb"
Chain information for Isolde_E_gj1.pdb #1
---
Chain | Description
E | No description available
Chain information for Isolde_E_gj1.pdb
---
Chain | Description
1.2/E | No description available
> open "D:/P22 procapsid model building/RSR35/RSR35_A_to_G/denmod32_map.ccp4"
Opened denmod32_map.ccp4 as #2, grid size 134,154,163, pixel 1.3,1.3,1.3,
shown at level 0.314, step 1, values float32
> clipper associate #2 toModel #1
Opened denmod32_map.ccp4 as #1.1.1.1, grid size 134,154,163, pixel
1.3,1.3,1.3, shown at step 1, values float32
> isolde start
> set selectionWidth 4
Done loading forcefield
> isolde start
> addh
Summary of feedback from adding hydrogens to Isolde_E_gj1.pdb #1.2
---
notes | No usable SEQRES records for Isolde_E_gj1.pdb (#1.2) chain E; guessing
termini instead
Chain-initial residues that are actual N termini: /E ASN 4
Chain-initial residues that are not actual N termini: /E ASP 210
Chain-final residues that are actual C termini: /E GLN 428
Chain-final residues that are not actual C termini: /E TYR 180
264 hydrogen bonds
Adding 'H' to /E ASP 210
2998 hydrogens added
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
> addh
Summary of feedback from adding hydrogens to Isolde_E_gj1.pdb #1.2
---
notes | No usable SEQRES records for Isolde_E_gj1.pdb (#1.2) chain E; guessing
termini instead
Chain-initial residues that are actual N termini: /E ASN 4
Chain-initial residues that are not actual N termini: /E ASP 210
Chain-final residues that are actual C termini: /E GLN 428
Chain-final residues that are not actual C termini: /E TYR 180
257 hydrogen bonds
0 hydrogens added
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
> close
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
> open "D:\P22 procapsid model building\RSR35\RSR35_A_to_G\Isolde_E_gj1.pdb"
> format pdb
Chain information for Isolde_E_gj1.pdb #1
---
Chain | Description
E | No description available
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Chain information for Isolde_E_gj1.pdb
---
Chain | Description
1.2/E | No description available
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb
self._update_iffy_rota_list()
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
Error processing trigger "changes done":
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted
File "C:\Users\김기정\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list
if not table.isVisible():
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 1060 3GB/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Micro-Star International Co., Ltd.
Model: H110 Gaming Trident 3 (MS-B906)
OS: Microsoft Windows 10 Pro (Build 19043)
Memory: 17,127,264,256
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-7400 CPU @ 3.00GHz
OSLanguage: ko-KR
Locale: ('ko_KR', 'cp949')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-Clipper: 0.16.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.2.2
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pywin32: 228
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Third Party |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → various errors |
comment:2 by , 4 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
Seems like all these errors are moot in 1.3