Timeline



Nov 22, 2024:

10:56 PM Ticket #16365 (volume splitbyzone: ArrayMemoryError) created by chimerax-bug-report@…
[…]
10:20 PM Ticket #16364 (Crash in open/save dialog on Windows) created by chimerax-bug-report@…
[…]
8:31 PM Ticket #16363 ('MarkedHistogram' object has no attribute '_min_val') created by chimerax-bug-report@…
[…]
6:51 PM Ticket #16362 (Error setting cavity color) created by Elaine Meng
[…]
6:08 PM Ticket #16361 (Crash in find_close_points_boxes recursion) created by chimerax-bug-report@…
[…]
2:09 PM Ticket #16359 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: ChimeraX crashed in the Qt window toolkit. This is a bug in Qt which …
2:03 PM Ticket #16352 (vop add: ArrayMemoryError) closed by Tom Goddard
limitation: Out of memory allocating a volume from volume add command. Working …
1:47 PM Ticket #16348 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:59 AM NIAID2024 edited by Tom Goddard
(diff)
10:51 AM NIAID2024 edited by Tom Goddard
(diff)
10:50 AM NIAID2024 edited by Tom Goddard
(diff)
10:49 AM NIAID2024 edited by Tom Goddard
(diff)
10:48 AM NIAID2024 edited by Tom Goddard
(diff)
10:22 AM Ticket #16360 (Crash in garbage collection) closed by pett
duplicate
10:14 AM Ticket #16360 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:48 AM Ticket #16358 (ui view fourup: ZeroDivisionError) closed by pett
duplicate
8:45 AM Ticket #16356 (Crash drawing widget) closed by pett
can't reproduce: Hi Nicolas, The version of ChimeraX you are using (0.91) is five …
4:24 AM Ticket #16359 (Crash on Mac waking from sleep) created by helen.duyvesteyn@…
[…]
1:56 AM Ticket #16358 (ui view fourup: ZeroDivisionError) created by chimerax-bug-report@…
[…]
1:56 AM Ticket #16357 (ui view fourup: ZeroDivisionError) created by chimerax-bug-report@…
[…]
1:53 AM Ticket #16356 (Crash drawing widget) created by nicolas.biteau@…
[…]

Nov 21, 2024:

4:35 PM Ticket #16354 (Cannot save preferences file: No space left on device) closed by pett
nonchimerax
4:32 PM Ticket #16353 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Muralikrishna, Thanks for reporting this problem. It is fixed in …
4:27 PM Ticket #16351 (Color byattr: min() arg is an empty sequence) closed by pett
can't reproduce
4:26 PM Ticket #16350 (Crash running open-file dialog) closed by pett
can't reproduce
4:21 PM Ticket #16347 (Crash on Mac waking from sleep) closed by pett
duplicate
3:44 PM Ticket #16346 (Bug with the user-defined selector) closed by pett
can't reproduce: Hi Suli-Anne, Thanks for reporting this problem. Since "name frozen" …
1:33 PM 2024-11-21 edited by Tom Goddard
(diff)
12:41 PM Ticket #16355 (help matchmaker: 'NoneType' object has no attribute 'split') created by chimerax-bug-report@…
[…]
11:57 AM Ticket #16354 (Cannot save preferences file: No space left on device) created by chimerax-bug-report@…
[…]
8:45 AM Ticket #16353 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by muralikrishna.lella@…
[…]
5:37 AM Ticket #16352 (vop add: ArrayMemoryError) created by chimerax-bug-report@…
[…]
1:02 AM Ticket #16351 (Color byattr: min() arg is an empty sequence) created by chimerax-bug-report@…
[…]
12:07 AM Ticket #16350 (Crash running open-file dialog) created by chimerax-bug-report@…
[…]

Nov 20, 2024:

10:16 PM 2024-11-21 edited by Tom Goddard
(diff)
10:15 PM 2024-11-21 edited by Tom Goddard
(diff)
5:05 PM Ticket #16061 (Support chains in "color byattribute") closed by pett
fixed: Implemented chain attributes in the "color byattribute" command. The …
3:54 PM Ticket #16349 (Session save: Unable to restore objects of IHMModel class in ...) created by ccaffalett@…
[…]
1:43 PM Ticket #16348 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
1:19 PM Ticket #16347 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:27 PM Ticket #16346 (Bug with the user-defined selector) created by Suli-Anne.Laurin@…
[…]
11:40 AM Ticket #16333 (Render by Attribute: cannot create weak reference to 'NoneType' object) closed by pett
fixed: Fix: …
11:39 AM ChangeLog edited by Elaine Meng
(diff)
10:25 AM Ticket #16344 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by Tom Goddard
duplicate: Fixed months ago. This bug was only in a few daily builds.
9:58 AM Ticket #16345 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by pett
duplicate
9:52 AM Ticket #16342 (Crash moving window between screens) closed by pett
can't reproduce
9:49 AM Ticket #16341 (Crash on exit) closed by pett
can't reproduce
8:31 AM Ticket #16345 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by chimerax-bug-report@…
[…]
8:30 AM Ticket #16344 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by chimerax-bug-report@…
[…]
7:41 AM Ticket #16343 (SEQCROW: 'Session' object has no attribute 'log') created by chimerax-bug-report@…
[…]
4:37 AM Ticket #16342 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
3:32 AM Ticket #16341 (Crash on exit) created by chimerax-bug-report@…
[…]

Nov 19, 2024:

6:44 PM Ticket #16339 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: ChimeraX crashed due to a bug in the Qt window toolkit. It seems to …
5:36 PM Ticket #16338 (Crash on Mac waking from sleep) closed by pett
duplicate
5:34 PM Ticket #16337 (Crash on Mac waking from sleep) closed by pett
duplicate
5:33 PM Ticket #16336 (Crash closing models) closed by pett
can't reproduce: Some were combinations, but that's not enough to go on.
4:52 PM Dev2024-11-25 edited by pett
(diff)
1:56 PM Ticket #16340 (ISOLDER: Scipy symbol not found while registering command) created by jean-marc.jeckelmann@…
[…]
1:55 PM Ticket #16339 (Crash on Mac waking from sleep) created by ccaffalett@…
[…]
1:37 PM Ticket #16338 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:03 PM Ticket #16337 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
11:55 AM Dev2024-11-25 edited by Tom Goddard
(diff)
11:54 AM Dev2024-11-25 created by Tom Goddard
11:53 AM 2024-11-21 created by Tom Goddard
11:37 AM Ticket #16336 (Crash closing models) created by chimerax-bug-report@…
[…]
11:36 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:25 AM Ticket #16335 (Segmentations: KeyError deleting VolumeImage) created by chimerax-bug-report@…
[…]
11:25 AM Ticket #16334 (DICOM: index is out of bounds) created by chimerax-bug-report@…
[…]
10:59 AM Ticket #16331 (Crash on Mac waking from sleep) closed by pett
duplicate
10:58 AM Ticket #16327 (Session tries to add same model twice) closed by Tom Goddard
can't reproduce: They are using Segger and opened some .seg segmentations from Segger. …
10:58 AM Ticket #16330 (ArtiaX: superqt slider: float division by zero) closed by pett
duplicate
10:49 AM Ticket #16328 (Crash on Mac waking from sleep) closed by pett
duplicate
10:45 AM Ticket #16326 (Crash running open/save dialog) closed by pett
can't reproduce
10:37 AM Ticket #16332 (Covalent vs. coordination bonds) closed by pett
fixed: In the 1.8 build they are covalent, but in the daily build from 10/29 …
10:12 AM Ticket #16333 (Render by Attribute: cannot create weak reference to 'NoneType' object) created by chimerax-bug-report@…
[…]
9:48 AM Ticket #16332 (Covalent vs. coordination bonds) created by pett
The heme iron bonds in mmCIF 6fqf are covalent when they should be …
3:35 AM Ticket #16331 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:45 AM Ticket #16330 (ArtiaX: superqt slider: float division by zero) created by chimerax-bug-report@…
[…]
1:33 AM Ticket #16329 (ArtiaX: superqt slider: float division by zero) created by chimerax-bug-report@…
[…]

Nov 18, 2024:

8:47 PM Ticket #16328 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:03 PM Ticket #16327 (Session tries to add same model twice) created by chimerax-bug-report@…
[…]
4:30 PM Dev2024-11-18 edited by Tom Goddard
(diff)
4:21 PM Ticket #9398 (issues opening 4D heart ultrasound data from Rubinstein) closed by Zach Pearson
fixed: I unfortunately don't remember when I fixed this, but it doesn't give …
3:27 PM Dev2024-11-18 edited by Tom Goddard
(diff)
3:10 PM Dev2024-11-18 edited by Tom Goddard
(diff)
2:49 PM Ticket #16325 (Modeller mismatch failure) closed by pett
fixed: Fixed. Fix available in next daily build and 1.9 release candidate. …
1:57 PM Ticket #16326 (Crash running open/save dialog) created by chimerax-bug-report@…
[…]
12:19 PM Dev2024-11-18 edited by Tom Goddard
(diff)
12:07 PM Ticket #16324 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: Did you have a second display connected to your iMac when ChimeraX …
11:35 AM Ticket #16322 (glBufferData: out of memory) closed by Tom Goddard
can't reproduce: glBufferData() failed allocating 48 bytes on expose event showing …
11:26 AM Ticket #1211 (show nucleotide representations for modified nucleic acids) closed by Greg Couch
fixed: The floating in space bug was fixed in #5732. Not planning to add …
11:05 AM Ticket #16325 (Modeller mismatch failure) created by jmsstarlight@…
I still have some problems with the reconstructions of the loop …
10:55 AM Ticket #16324 (Crash on Mac waking from sleep) created by michelle.moritz@…
[…]
10:39 AM Ticket #16319 (Nov 14 2024 MacOS md5 wrong) closed by Zach Pearson
can't reproduce: Probably a delay in updating the website. Today's build's hash is …
10:37 AM 2024-11-14 edited by Zach Pearson
(diff)
10:13 AM Ticket #16323 (Crash in QListWidgetitem.text()) closed by pett
can't reproduce
10:05 AM Ticket #16320 (Tool window close: tool_instance is None) closed by pett
can't reproduce: No idea what this person is doing, opening the same UniProt over and …
9:50 AM Ticket #16323 (Crash in QListWidgetitem.text()) created by chimerax-bug-report@…
[…]
9:14 AM Ticket #16322 (glBufferData: out of memory) created by chimerax-bug-report@…
[…]
6:50 AM Ticket #16321 (MTZ file missing or corrupted) created by chimerax-bug-report@…
[…]
4:05 AM Ticket #16320 (Tool window close: tool_instance is None) created by chimerax-bug-report@…
[…]

Nov 16, 2024:

1:12 PM Ticket #16319 (Nov 14 2024 MacOS md5 wrong) created by robert@…
[…]

Nov 15, 2024:

1:35 PM Ticket #6977 (PDB two-letter chain ID sometimes not recognized if TER missing) closed by pett
fixed: Now if the chain ID changes between consecutive records, the code just …
11:51 AM Ticket #16315 (KeyError adding standard charges) closed by pett
fixed: Was already catching non-standard-residue charge errors. Now do the …
11:24 AM Ticket #16318 (Crash at startup) closed by pett
can't reproduce: Looks like it crashed in the Chromium process
11:08 AM Dev2024-11-18 edited by Tom Goddard
(diff)
11:02 AM Ticket #16318 (Crash at startup) created by chimerax-bug-report@…
[…]
10:11 AM Ticket #16317 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:04 AM Ticket #16316 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The usual Mac Qt 6.7 crash in …
9:53 AM Ticket #16312 (Crash on Mac waking from sleep, Qt 6.7) closed by Tom Goddard
duplicate: Crash in Qt 6.7 in _NSViewHierarchyDidChangeBackingProperties. I'm …
9:53 AM Ticket #16314 (Crash in Qt rendering after opening a bazillion sequence viewers) closed by pett
can't reproduce: Again, don't know how/why the user is creating this many sequence viewers
9:50 AM Ticket #16313 (Crash in Qt rendering after opening a bazillion sequence viewers) closed by pett
can't reproduce: AFAIK, the user needs to specifically allow that many sequence viewers …
9:48 AM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) closed by Tom Goddard
duplicate
9:48 AM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) reopened by Tom Goddard
8:11 AM Ticket #16317 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
5:38 AM Ticket #16316 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Nov 14, 2024:

6:15 PM Ticket #16315 (KeyError adding standard charges) created by chimerax-bug-report@…
[…]
3:54 PM Ticket #16314 (Crash in Qt rendering after opening a bazillion sequence viewers) created by chimerax-bug-report@…
[…]
3:53 PM Ticket #16313 (Crash in Qt rendering after opening a bazillion sequence viewers) created by chimerax-bug-report@…
[…]
2:21 PM AddTracUser edited by pett
(diff)
1:59 PM Ticket #16312 (Crash on Mac waking from sleep, Qt 6.7) created by chimerax-bug-report@…
[…]
1:48 PM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) closed by Tom Goddard
fixed: The usual Qt 6.7 crash in _NSViewHierarchyDidChangeBackingProperties. …
1:45 PM Ticket #16308 (Crash showing full lighting) closed by Tom Goddard
can't reproduce: Python traceback claims it crashed in _geometry.invert_orthonormal(). …
1:26 PM Ticket #16307 (Crash showing side view) closed by Greg Couch
can't reproduce: Need a reproducible test case. Tried everything from the last close …
1:05 PM Ticket #16309 (Crash on Mac waking from sleep) closed by pett
duplicate
12:55 PM Ticket #16306 (Cannot save preferences file: No such file or directory) closed by pett
can't reproduce: Something weird is going on here. The ChimeraX PID was 2! Virtual …
12:06 PM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) created by chimerax-bug-report@…
[…]
12:05 PM 2024-11-14 edited by Tom Goddard
(diff)
12:04 PM 2024-11-14 edited by Tom Goddard
(diff)
11:45 AM Ticket #16012 (ChimeraX bug report submission) closed by prottinghuis
fixed
11:43 AM Ticket #16011 (using Schol-AR tool, failure to create an augmentation for my project) closed by prottinghuis
fixed
11:40 AM Ticket #16035 (Schol-AR gives "no session file found") closed by prottinghuis
fixed
10:54 AM Ticket #16305 (Crash with XCB errors) closed by Tom Goddard
nonchimerax: Apparently the xcb X11 client library lost the connection to the …
10:46 AM Ticket #16304 (Crash in garbage collection) closed by pett
duplicate
10:37 AM Ticket #16310 (Port WriteDMS) created by bruce.milthorpe@…
per summary
10:31 AM Ticket #16302 (Missing tools) closed by pett
limitation: Hi Bruce, Despite the fact that the ChimeraX Structure Editing menu …
10:30 AM Ticket #16301 (Session save: SphereModel not in MapEraser's get_class()) closed by Tom Goddard
fixed: Fixed in daily build only, not 1.9. User color zoned the map eraser …
7:22 AM Ticket #16309 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
7:06 AM Ticket #16308 (Crash showing full lighting) created by chimerax-bug-report@…
[…]
6:54 AM Ticket #16307 (Crash showing side view) created by chimerax-bug-report@…
[…]
5:35 AM Ticket #16306 (Cannot save preferences file: No such file or directory) created by chimerax-bug-report@…
[…]
3:30 AM Ticket #16305 (Crash with XCB errors) created by chimerax-bug-report@…
[…]
2:08 AM Ticket #16304 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
12:50 AM Ticket #16303 (ISOLDE: 'MDFFMgr' object has no attribute 'was_deleted') created by chimerax-bug-report@…
[…]

Nov 13, 2024:

9:20 PM Ticket #16302 (Missing tools) created by bruce.milthorpe@…
[…]
8:26 PM Ticket #16301 (Session save: SphereModel not in MapEraser's get_class()) created by chimerax-bug-report@…
[…]
12:36 PM ChangeLog edited by Elaine Meng
(diff)
12:35 PM ChangeLog edited by Elaine Meng
(diff)
10:01 AM Ticket #16300 (Inadequate OpenGL version) closed by Tom Goddard
nonchimerax: The only solution is to update your computer graphics driver or use a …
9:56 AM Ticket #16298 (Segger: realpath(): Operation not permitted) closed by Tom Goddard
nonchimerax: This error means ChimeraX has been started in a directory that you …
9:31 AM Ticket #16299 (Segger: realpath(): Operation not permitted) closed by pett
duplicate
9:28 AM Ticket #16297 (Crash moving window between screens) closed by pett
duplicate: Also: "The cached device pixel ratio value was stale on window expose"
2:16 AM Ticket #16300 (Inadequate OpenGL version) created by nogueram819@…
[…]

Nov 12, 2024:

6:22 PM Ticket #16299 (Segger: realpath(): Operation not permitted) created by Irene.Kiburu@…
[…]
3:36 PM Ticket #16298 (Segger: realpath(): Operation not permitted) created by Irene.Kiburu@…
[…]
2:08 PM Ticket #16296 (Color key runs command during session close) closed by pett
fixed
1:14 PM Ticket #16297 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
11:16 AM Ticket #16295 (Crash reading PDB file) closed by pett
can't reproduce
11:15 AM Ticket #16294 (Infinite(?) recursion laying out sequence alignment) closed by pett
duplicate
11:14 AM Ticket #16293 (Infinite(?) recursion laying out sequence alignment) closed by pett
duplicate
11:13 AM Ticket #16292 (Infinite(?) recursion laying out sequence alignment) closed by pett
can't reproduce
11:10 AM Ticket #16291 (Crash getting unique structures during add charge) closed by pett
can't reproduce: Hi Andreu, Thanks for reporting this problem. It would be a bit hard …
10:54 AM Dev2024-11-18 created by Tom Goddard
10:53 AM 2024-11-14 created by Tom Goddard
10:51 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:49 AM Ticket #16283 (Crash on Mac waking from sleep, Qt 6.7) closed by Tom Goddard
duplicate: The usual crash in _NSViewHierarchyDidChangeBackingProperties, in Qt …
10:47 AM Ticket #16288 (QScore: UserError not imported) closed by pett
duplicate
10:42 AM Ticket #16286 (UnicodeDecodeError reading PDB file) closed by pett
can't reproduce
10:39 AM Ticket #16285 (Crash in garbage collection) closed by pett
duplicate
10:38 AM Ticket #16284 (Crash at startup) closed by pett
can't reproduce
10:36 AM Ticket #16282 (Crash in atom.coord() after ISOLDE sim start) closed by pett
can't reproduce
9:21 AM Ticket #16281 (Crash on Mac waking from sleep) closed by pett
duplicate
9:06 AM Ticket #16278 (Crash on Mac waking from sleep) closed by pett
duplicate
9:04 AM Ticket #16277 (Crash running open/save dialog) closed by pett
can't reproduce
5:42 AM Ticket #16296 (Color key runs command during session close) created by chimerax-bug-report@…
[…]
4:20 AM Ticket #16295 (Crash reading PDB file) created by chimerax-bug-report@…
[…]
2:11 AM Ticket #16294 (Infinite(?) recursion laying out sequence alignment) created by chimerax-bug-report@…
[…]
2:11 AM Ticket #16293 (Infinite(?) recursion laying out sequence alignment) created by chimerax-bug-report@…
[…]
2:10 AM Ticket #16292 (Infinite(?) recursion laying out sequence alignment) created by chimerax-bug-report@…
[…]
12:46 AM Ticket #16291 (Crash getting unique structures during add charge) created by andreu.mormaldonado@…
[…]

Nov 11, 2024:

6:50 PM Ticket #16290 (SEQCROW: cannot access local variable 'line' where it is not ...) created by chimerax-bug-report@…
[…]
6:17 PM Ticket #16289 (Graduate Student Using ChimeraX - Encountering Issue w/ Downloading ...) created by e8kwon@…
[…]
10:25 AM Ticket #16288 (QScore: UserError not imported) created by craman@…
[…]
9:58 AM Ticket #16287 (QScore: UserError not imported) created by craman@…
[…]

Nov 10, 2024:

10:34 PM Ticket #16286 (UnicodeDecodeError reading PDB file) created by chimerax-bug-report@…
[…]
9:27 PM Ticket #16285 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:14 PM Ticket #16284 (Crash at startup) created by chimerax-bug-report@…
[…]
6:08 AM Ticket #16283 (Crash on Mac waking from sleep, Qt 6.7) created by chimerax-bug-report@…
[…]
12:33 AM Ticket #16282 (Crash in atom.coord() after ISOLDE sim start) created by chimerax-bug-report@…
[…]

Nov 9, 2024:

4:24 PM Ticket #16281 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Nov 8, 2024:

10:55 PM Ticket #16280 (ISOLDE: cannot access local variable 'o' where it is not associated ...) created by sethh@…
[…]
8:06 PM Ticket #16279 (Add Charge failure) created by johnfranciscortez.jfc@…
[…] Report Log.txt
3:44 PM Ticket #16278 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:19 PM Ticket #16277 (Crash running open/save dialog) created by chimerax-bug-report@…
[…]
1:47 PM Ticket #16276 (Empty residues in trajectory) created by pett
Opening the trajectory in …
11:39 AM Ticket #16256 (Installation Issues with UCSF ChimeraX on Debian 12) closed by Greg Couch
limitation: The debian package for GLIBC is called libc6. Ubuntu 24.04 has …
10:21 AM Ticket #16274 (measure sasa setAttribute true: crash in spheres_surface_area) closed by Tom Goddard
duplicate: Duplicate of #16273
10:17 AM Ticket #16271 (Segger: ArrayMemoryError) closed by Tom Goddard
limitation: Trying to segment a large 1100 by 1100 by 1100 map with Segger on a …
9:57 AM Ticket #16275 (measure sasa setAttribute true: crash in spheres_surface_area) closed by pett
duplicate
9:43 AM Ticket #16275 (measure sasa setAttribute true: crash in spheres_surface_area) created by jheld@…
[…]
9:40 AM Ticket #16274 (measure sasa setAttribute true: crash in spheres_surface_area) created by jheld@…
[…]
9:30 AM Ticket #16273 (measure sasa: crash in spheres_surface_area) created by jheld@…
[…]
9:09 AM Ticket #16270 (Restart required to use new bundle) closed by Zach Pearson
limitation: Unfortunately this is the expected behavior. Python does not support …
8:38 AM Ticket #16269 (install pyKVFinder: HTTPSConnectionPool(host='files.pythonhosted.org', ...) closed by pett
duplicate: Another variant of "pip install pyKVFinder" failing. This older …
8:32 AM Ticket #16268 (python_instances_of_class:access violation) closed by pett
duplicate
8:15 AM Ticket #16272 (SEQCROW: uv_vis_file is a tuple) created by 2529108683@…
[…]
6:53 AM Ticket #16271 (Segger: ArrayMemoryError) created by chimerax-bug-report@…
[…]
6:37 AM Ticket #16270 (Restart required to use new bundle) created by catherineenguyen98@…
[…]

Nov 7, 2024:

9:54 PM Ticket #16269 (install pyKVFinder: HTTPSConnectionPool(host='files.pythonhosted.org', ...) created by chimerax-bug-report@…
[…]
8:35 PM Ticket #16268 (python_instances_of_class:access violation) created by chimerax-bug-report@…
[…]
6:36 PM NIAID2024 edited by Tom Goddard
(diff)
5:20 PM Ticket #9867 (Feature/Region browser requests) closed by pett
fixed: Part of your original set of suggestions in the ticket description was …
4:59 PM Ticket #16267 (Duplicate drawings break orthoplane viewers) created by Zach Pearson
When both the orthoplane viewer and the 3d window are showing the same …
4:08 PM Ticket #16209 (ui view fourup: ZeroDivisionError) closed by Zach Pearson
fixed: This happened when the user opened the segmentations tool without an …
3:55 PM Ticket #16220 (Pip install dependency from a specified repository) closed by Zach Pearson
fixed: Equivalent ticket closed on GitHub
3:54 PM Ticket #16258 (Check for updates: Got an unexpected keyword argument 'arch') closed by Zach Pearson
fixed
1:52 PM NIAID2024 edited by Elaine Meng
(diff)
1:49 PM Ticket #16266 (VR error: CompositorError_IsNotSceneApplication) created by rkrishnan@…
[…]
11:05 AM Ticket #16264 (Crash in garbage collection) closed by pett
duplicate
11:04 AM Ticket #16263 (Crash on Mac waking from sleep) closed by pett
duplicate
11:04 AM Ticket #16263 (Crash on Mac waking from sleep) reopened by pett
11:03 AM Ticket #16263 (Crash on Mac waking from sleep) closed by pett
duplicate
11:02 AM Ticket #16265 (Failed notarizations should not be put in downloads) created by Tom Goddard
Mac notarization failure is supposed to be a build failure so the …
10:59 AM Ticket #16262 (ChimeraX-1.9-rc2024.11.06.app will not open on Mac) closed by pett
fixed: Hi Michael, Thanks for reporting this problem. It has been fixed and …
10:58 AM Ticket #16260 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: Crashed in 1.8, reported with 1.9rc. Phew!
10:55 AM Ticket #16261 (Crash on Mac waking from sleep) closed by pett
duplicate
10:53 AM Ticket #16259 (Quota exceeded saving command history) closed by pett
nonchimerax
10:35 AM Ticket #16264 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:02 AM Ticket #16263 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:55 AM Ticket #16262 (ChimeraX-1.9-rc2024.11.06.app will not open on Mac) created by Michael.Holdsworth@…
[…]
3:17 AM Ticket #16261 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Nov 6, 2024:

10:35 PM Ticket #16260 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
9:04 PM Ticket #16259 (Quota exceeded saving command history) created by chimerax-bug-report@…
[…]
7:19 PM Ticket #16257 (glBufferData: out of memory) closed by Tom Goddard
limitation: Tried to display 1100 by 1100 by 1100 map as surface and failed to …
7:09 PM Ticket #16251 (Crash on Mac waking from sleep, Qt 6.7) closed by Tom Goddard
can't reproduce: Crud. Maybe my previous assessment that Qt 6.7 mostly fixed this …
6:48 PM Dev2024-11-11 created by Tom Goddard
6:47 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:44 PM Ticket #16247 (Graphics crash using ISOLDE, macOS 14.7, AMD Radeon Pro 5500M) closed by Tom Goddard
nonchimerax: Crash in Apple's AMD graphics driver.
6:37 PM Ticket #16242 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:14 AM Ticket #16248 ("similarstructures ligands" does not check if user wants to fetch that ...) closed by Tom Goddard
fixed: Fixed. The Ligands button on the similar structure GUI was asking …
10:46 AM Ticket #16258 (Check for updates: Got an unexpected keyword argument 'arch') created by goddard@…
[…]
9:11 AM Ticket #16257 (glBufferData: out of memory) created by chimerax-bug-report@…
[…]
8:11 AM Ticket #16254 (Crash on Mac waking from sleep) closed by pett
duplicate
6:06 AM Ticket #16256 (Installation Issues with UCSF ChimeraX on Debian 12) created by luciano.pinho@…
[…]
5:30 AM Ticket #16255 (Tsinghua/China forbidden from PyPi) created by chimerax-bug-report@…
[…]
12:06 AM Ticket #16254 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Nov 5, 2024:

12:39 PM DeveloperMeetings edited by Zach Pearson
(diff)
9:42 AM Ticket #16253 (KeyboardInterrupt (during "volume level"?)) closed by pett
not a bug
9:40 AM Ticket #16253 (KeyboardInterrupt (during "volume level"?)) created by chimerax-bug-report@…
[…]
9:19 AM Ticket #16252 (Crash running modal dialog) closed by pett
can't reproduce
9:18 AM Ticket #16251 (Crash on Mac waking from sleep, Qt 6.7) reopened by pett
9:14 AM Ticket #16251 (Crash on Mac waking from sleep, Qt 6.7) closed by pett
can't reproduce
7:34 AM ChangeLog edited by Elaine Meng
(diff)

Nov 4, 2024:

10:52 PM Ticket #16252 (Crash running modal dialog) created by chimerax-bug-report@…
[…]
10:52 PM Ticket #16251 (Crash on Mac waking from sleep, Qt 6.7) created by chimerax-bug-report@…
[…]
7:08 PM Ticket #16250 (KVFinder: error in "pip install" error handling) created by yongquan0043@…
[…]
5:11 PM Ticket #16145 (Session restore: index out of range evaluating header) closed by pett
can't reproduce: There are almost 5000 commands in the log and 20 models open, many of …
4:58 PM Ticket #16249 (Similar Structures sequence plot: weirdness coloring with context menu) created by Elaine Meng
If with the context menu in the sequence plot, I turn on coloring the …
1:42 PM Ticket #16248 ("similarstructures ligands" does not check if user wants to fetch that ...) created by Elaine Meng
I figured it was just an oversight since "similarstructures cluster" …
12:35 PM Ticket #16247 (Graphics crash using ISOLDE, macOS 14.7, AMD Radeon Pro 5500M) created by chimerax-bug-report@…
[…]
12:10 PM Ticket #16246 (Crash in Structure::_delete_atoms()) closed by pett
can't reproduce
11:48 AM Ticket #15580 ('close' with segmentation tool opened tries to reset mouse bindings ...) closed by Zach Pearson
fixed: Should have been fixed in …
11:25 AM Ticket #16241 (Read XTC file: Couldn't allocate enough memory for coords) closed by pett
limitation: Switched to LimitationError
11:20 AM Ticket #16246 (Crash in Structure::_delete_atoms()) created by chimerax-bug-report@…
[…]
11:12 AM Ticket #16245 (Restore new session in old ChimeraX) closed by pett
limitation
11:01 AM Ticket #16243 (Crash on Mac waking from sleep) closed by pett
duplicate
10:55 AM Ticket #16240 (Crash on Mac waking from sleep) closed by pett
duplicate
10:53 AM Ticket #16239 (Crash moving window between displays) closed by pett
duplicate
10:47 AM Ticket #16237 (Crash on Mac waking from sleep) closed by pett
duplicate
10:45 AM Ticket #16236 (Crash running registration dialog) closed by pett
can't reproduce
10:44 AM Ticket #16235 (Crash running registration dialog) closed by pett
can't reproduce
10:43 AM Ticket #16234 (Session save: No bundle information for chimerax.core.tasks.Tasks) closed by pett
duplicate
5:05 AM Ticket #16245 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
3:08 AM Ticket #16244 (ISOLDE: crash using HIP simulation) created by benjamin.seager@…
[…]
1:31 AM Ticket #16243 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:02 AM Ticket #16242 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]

Nov 3, 2024:

11:11 PM Ticket #16241 (Read XTC file: Couldn't allocate enough memory for coords) created by chimerax-bug-report@…
[…]
4:58 PM Ticket #16240 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
10:35 AM Ticket #16239 (Crash moving window between displays) created by chimerax-bug-report@…
[…]
10:15 AM Ticket #16238 (Download DICOM thread garbage collected while running) created by chimerax-bug-report@…
[…]
5:33 AM Ticket #16237 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Nov 3, 2024:

1:24 AM Ticket #16236 (Crash running registration dialog) created by chimerax-bug-report@…
[…]

Nov 2, 2024:

10:49 AM Ticket #15211 (fourup slice view coloring does not track color wells in Volume Viewer) closed by Zach Pearson
fixed: Should be fixed on develop and release: …
3:01 AM Ticket #16235 (Crash running registration dialog) created by chimerax-bug-report@…
[…]

Nov 1, 2024:

2:53 PM Ticket #16233 (Crash while quitting) closed by pett
can't reproduce
2:52 PM Ticket #16232 (Crash on Mac waking from sleep) closed by pett
duplicate
2:51 PM Ticket #16231 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by pett
duplicate: Hi Kira, Thanks for reporting this problem. It has been fixed and …
2:36 PM Ticket #16234 (Session save: No bundle information for chimerax.core.tasks.Tasks) created by chimerax-bug-report@…
[…]
1:59 PM Ticket #16230 (Crash showing cartoons) closed by pett
can't reproduce: Hi Moon, Thanks for reporting this problem. There isn't quite enough …
10:33 AM Ticket #16228 (Crash in event handling during AlphaFold prediction) closed by Tom Goddard
can't reproduce: Thread 24 faulted listing WebEngineError::UserAbortedError in one of …
10:20 AM Ticket #16226 (Segger: gaussian_surface: bounding_grid() missing 1 required ...) closed by Tom Goddard
duplicate: This bug was fixed a few months ago and was present in just a few …
9:33 AM Ticket #16229 (Crash in garbage collection) closed by pett
duplicate
9:30 AM Ticket #16227 (Crash in garbage collection) closed by pett
duplicate
8:03 AM Ticket #16233 (Crash while quitting) created by chimerax-bug-report@…
[…]
4:26 AM Ticket #16232 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:37 AM Ticket #16231 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by kira.yost@…
[…]

Oct 31, 2024:

6:51 PM Ticket #16230 (Crash showing cartoons) created by 745324914@…
[…]
6:42 PM Ticket #16229 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
6:15 PM Ticket #16219 (view sel: 'NoneType' object has no attribute 'get_scene_positions') closed by Tom Goddard
fixed: Fixed in daily build, not in 1.9. I decided to go for a narrow fix …
5:59 PM 2024-10-31 edited by Tom Goddard
(diff)
5:59 PM 2024-10-31 edited by Tom Goddard
(diff)
3:16 PM Ticket #16225 (Crash in QWebEnginePage::triggerAction while running AlphaFold prediction) closed by Tom Goddard
can't reproduce: Probable QWebEngine bug, Qt 6.7. Looks like user did a mouse click …
3:13 PM Ticket #16224 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
2:28 PM Ticket #16228 (Crash in event handling during AlphaFold prediction) created by chimerax-bug-report@…
[…]
2:21 PM Ticket #16227 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:55 PM Ticket #16226 (Segger: gaussian_surface: bounding_grid() missing 1 required ...) created by chimerax-bug-report@…
[…]
1:36 PM ChangeLog edited by pett
(diff)
1:30 PM ChangeLog edited by pett
(diff)
12:07 PM 2024-10-31 edited by Tom Goddard
(diff)
10:06 AM Ticket #16225 (Crash in QWebEnginePage::triggerAction while running AlphaFold prediction) created by chimerax-bug-report@…
[…]
9:52 AM Ticket #16224 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]

Oct 30, 2024:

4:00 PM Ticket #16223 (Similar Structures GUI search tries to use "sequence blast") closed by Tom Goddard
fixed: Fixed. Oops. The Search button on the Similar Structures gui using …
3:56 PM Ticket #16222 (Similar Structures: key error from clicking Traces) closed by Tom Goddard
fixed: Fixed. The C-alpha traces code I added yesterday was not properly …
3:11 PM Ticket #16223 (Similar Structures GUI search tries to use "sequence blast") created by Elaine Meng
oops need to change it to "similarstructures blast" tested in UCSF …
2:39 PM Ticket #3843 (transparency command does not work on nucleotides (target f)) closed by Elaine Meng
duplicate: duplicate of #14769
1:57 PM Ticket #16222 (Similar Structures: key error from clicking Traces) created by Elaine Meng
[…] 2gbp_mmseqs2_pdb.sms
12:43 PM Ticket #16221 (Read CHAI-1 PAE .npy files) created by Tristan Croll
[…] Wnt3a-wntless_with_ptm_as_ligand.zip
12:41 PM Ticket #16220 (Pip install dependency from a specified repository) created by deng.luo@…
Can ChimeraX pyproject.toml or bundle_info.xml install a dependency …
12:28 PM Ticket #16219 (view sel: 'NoneType' object has no attribute 'get_scene_positions') created by chimerax-bug-report@…
[…]
11:16 AM Ticket #16218 (ERROR IN PROTEIN-PROTEIN STRUCTURE PREDICTION USING ALPHA-FOLD) closed by Tom Goddard
worksforme: The error was probably a temporary problem with connecting to the …
10:56 AM Ticket #16218 (ERROR IN PROTEIN-PROTEIN STRUCTURE PREDICTION USING ALPHA-FOLD) created by daniel.sussman@…
Dear Sirs, When running ALPHA-FOLD for a protein-protein structure …
10:56 AM Ticket #16217 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: Yeah, don't like to see this crash again with Qt 6.7. But I think …
10:51 AM Ticket #16215 (Various graphics/GPU errors) closed by Tom Goddard
nonchimerax: Appears Qt html widget used by alphafold prediction had trouble with …
10:48 AM Ticket #16213 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: We believe this crash is fixed in the ChimeraX daily build and 1.9 …
10:44 AM Ticket #16214 (ui view fourup: ZeroDivisionError) closed by Zach Pearson
fixed: This bug comes from the 1.8 release candidate, but it shouldn't affect …
10:38 AM Ticket #16216 (Crash moving window between screens) closed by pett
duplicate
4:07 AM Ticket #16217 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:01 AM Ticket #16216 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
1:46 AM Ticket #16041 ("close #": v.session is None) closed by Zach Pearson
fixed: This should no longer affect any recent daily build.
12:36 AM Ticket #16215 (Various graphics/GPU errors) created by chimerax-bug-report@…
[…]

Oct 29, 2024:

10:26 PM Ticket #16214 (ui view fourup: ZeroDivisionError) created by chimerax-bug-report@…
[…]
11:44 AM Ticket #16213 (Crash on Mac waking from sleep) created by lyuf2@…
[…]
11:24 AM Ticket #16206 (Crash when window moved to new screen) closed by Tom Goddard
duplicate: Crash in Qt 6.6 in _NSViewHierarchyDidChangeBackingProperties.
11:22 AM 2024-10-31 created by Tom Goddard
11:21 AM 2024-10-24 edited by Tom Goddard
(diff)
11:21 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:59 AM Ticket #16212 (build replace: command not found) closed by pett
not a bug: Hi Jianghai, The "build replace" command was added after the 1.8 …
9:53 AM Ticket #16211 (UnicodeDecodeError opening PDB file) closed by pett
can't reproduce: Would need the PDB file
9:51 AM Ticket #16210 (Crash changing QDockWidget geometry) closed by pett
can't reproduce
9:24 AM Ticket #16212 (build replace: command not found) created by jianghai.zhu@…
[…]
6:27 AM Ticket #16211 (UnicodeDecodeError opening PDB file) created by chimerax-bug-report@…
[…]
5:19 AM Ticket #16210 (Crash changing QDockWidget geometry) created by chimerax-bug-report@…
[…]
3:14 AM Ticket #16209 (ui view fourup: ZeroDivisionError) created by kareya@…
[…]

Oct 28, 2024:

9:23 PM Ticket #16208 (similarstructures fromblast cmd claims there are no Blast Protein ...) closed by Tom Goddard
fixed: Fixed. I added an optional first argument to the "similarstructures …
5:26 PM Ticket #16152 ('sym' problems) closed by pett
fixed: mmcif_chain_id is a C++ attribute, so I know of no way to "eliminate" …
4:53 PM Ticket #16208 (similarstructures fromblast cmd claims there are no Blast Protein ...) created by Elaine Meng
[…]
3:47 PM Ticket #16207 (redundant foldseek results?) created by Elaine Meng
I don't know if this is a bug or some issue with the pdb100 database, …
3:40 PM Ticket #16205 (cartoon style nucleic: glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: We've seen this OpenGL error before, only on Linux. It seems to …
3:35 PM Ticket #16203 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
3:32 PM Dev2024-10-28 edited by Tom Goddard
(diff)
3:21 PM Ticket #16206 (Crash when window moved to new screen) created by chimerax-bug-report@…
[…]
2:50 PM Ticket #16195 (Cannot save image to public desktop) closed by Tom Goddard
limitation: Microsoft OneDrive replaces your normal Desktop folder causing …
2:43 PM Ticket #16194 (Crash rendering QToolButton icon: QPainter::begin: Paint device ...) closed by Tom Goddard
can't reproduce: I suspect this is related to the Mac external display issues as high …
2:37 PM Ticket #16204 (AlphaFold PAE: list index out of range) closed by Tom Goddard
duplicate: Was fixed in ChimeraX 1.8.
1:53 PM Ticket #16205 (cartoon style nucleic: glDrawBuffer: invalid operation) created by disha-gajanan.hiregange@…
[…]
1:24 PM Ticket #16204 (AlphaFold PAE: list index out of range) created by chimera-bug-report@…
The following bug report has been submitted: Platform: …
1:05 PM Ticket #16185 (Render by Attribute: attribute monitoring still on in dead tool) closed by pett
fixed: Fixed. Fix available in next daily build. (Fix: …
11:41 AM Ticket #16203 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
11:41 AM Ticket #16202 (ArtiaX: "artiax tomo": slider: float division by zero) created by chimerax-bug-report@…
[…]
10:52 AM Ticket #16200 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by pett
duplicate: Long ago fixed
10:47 AM Ticket #16198 (Render by Attribute: attribute monitoring still on in dead tool) closed by pett
duplicate: Duplicate of #16185
10:46 AM Ticket #16197 (Render by Attribute: attribute monitoring still on in dead tool) closed by pett
duplicate: Duplicate of #16185
10:44 AM Ticket #16196 (Render by Attribute: attribute monitoring still on in dead tool) closed by pett
duplicate: Duplicate of #16185

Oct 27, 2024:

7:57 AM Ticket #16201 (Crash opening .cif file) created by disha-gajanan.hiregange@…
[…]

Oct 25, 2024:

6:18 PM Ticket #16199 (Foldseek: reopening previous AFDB search results, choosing row, ...) closed by Tom Goddard
fixed: Fixed. The Open button was issuing the command "open <uniprot-id>" …
5:32 PM Ticket #16200 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by chimerax-bug-report@…
[…]
4:48 PM Ticket #15795 (Sequence characters not updated appropriately) closed by pett
fixed: Fix: …
4:34 PM Ticket #16199 (Foldseek: reopening previous AFDB search results, choosing row, ...) created by Elaine Meng
[…]
4:30 PM Ticket #16198 (Render by Attribute: attribute monitoring still on in dead tool) created by chimerax-bug-report@…
[…]
4:30 PM Ticket #16197 (Render by Attribute: attribute monitoring still on in dead tool) created by chimerax-bug-report@…
[…]
4:27 PM Ticket #16196 (Render by Attribute: attribute monitoring still on in dead tool) created by chimerax-bug-report@…
[…]
2:47 PM Ticket #15226 (binary wheels generated via pyproject.toml have wrong name on linux) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/a88c567d3fc4bca52753c35aca9336
2:22 PM Ticket #14769 (transparency command doesn't work on nucleotide representations) closed by Greg Couch
fixed: Fixed. Noticed that there is no support for 2d labels, nor undo support.
1:04 PM Ticket #16195 (Cannot save image to public desktop) created by joelcrane@…
[…]
12:13 PM Ticket #16192 (Ca RMSD header wrong) closed by pett
fixed: The actual problem was that there was a typo in the attribute name of …
11:03 AM Ticket #16194 (Crash rendering QToolButton icon: QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
10:40 AM Ticket #16191 (Segger: gaussian_surface: bounding_grid() missing 1 required ...) closed by Tom Goddard
duplicate: Fixed some weeks ago. Daily builds for about a week had some code …
10:30 AM Ticket #16189 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Probable Apple Intel graphics driver crash. Stack trace is missing …
10:29 AM Ticket #16193 (Ca RMSD header wrong) closed by pett
duplicate: Inadvertent duplicate
9:14 AM Ticket #16193 (Ca RMSD header wrong) created by vdalves@…
[…] [[Image(...)]]
9:06 AM Ticket #16190 (Mercury radius) closed by pett
not a bug: Hi Matthew, For metal cations, ChimeraX uses ionic radii values from …
9:02 AM Ticket #16192 (Ca RMSD header wrong) created by vdalves@…
[…] Screenshot from 2024-10-25 16-54-12.png
8:23 AM Ticket #16191 (Segger: gaussian_surface: bounding_grid() missing 1 required ...) created by chimerax-bug-report@…
[…]
5:51 AM Ticket #16190 (Mercury radius) created by mhvg1994@…
[…] Screenshot 2024-10-25 at 2.49.39 pm.png

Oct 24, 2024:

6:17 PM Ticket #1211 (show nucleotide representations for modified nucleic acids) reopened by Greg Couch
In those two examples, the nucleotides that are not slabbed, are not …
6:17 PM Ticket #3843 (transparency command does not work on nucleotides (target f)) reopened by pett
Yes, as per the description in the ticket, this is about the …
6:06 PM Ticket #16112 ("seq align" sequence names may need to be more specific in some ...) closed by pett
fixed: "seq align" now makes its best effort to ensure unique sequence names. …
5:45 PM Ticket #16189 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
5:39 PM Ticket #3843 (transparency command does not work on nucleotides (target f)) closed by Greg Couch
limitation: I think it that it only looks like it doesn't work due to the single …
5:35 PM Ticket #1211 (show nucleotide representations for modified nucleic acids) closed by Greg Couch
fixed: In 1h0q, LKC and LCC are not show as slabs, but TLN, LCG, and LCA are. …
4:52 PM Ticket #15258 (Show missing-structure labels: 'NoneType' object has no attribute ...) closed by Greg Couch
fixed: Fixed by Eric's changes.
4:41 PM Ticket #5493 (H-bonds nowhere near nucleic acid depictions) closed by Greg Couch
limitation: Getting the hydrogen bonds to move to positions on the abstract …
4:29 PM Ticket #5101 (Crash in Nucletides using weakref set) closed by Greg Couch
can't reproduce
4:24 PM Ticket #16176 (Error in glBufferData) closed by Tom Goddard
can't reproduce: OpenGL errors in glBufferData() rendering status line messages at startup.
4:23 PM Ticket #4199 (Modified nucleotides not depicted as ladder) closed by Greg Couch
not a bug: As documented, the ladder code depends on the hbond information. An …
4:18 PM Ticket #16187 (Crash in garbage collection) closed by pett
duplicate
4:17 PM Ticket #16188 (Crash in garbage collection) closed by pett
duplicate: Hi Elizabeth, Thanks for reporting this problem. It has been fixed …
4:02 PM Ticket #9513 (Nucleotide restore state is None) closed by Greg Couch
fixed: This was fixed on 26 October 2023 in the daily build. So it is in the …
2:57 PM Ticket #16188 (Crash in garbage collection) created by elizabeth.bond@…
[…]
2:57 PM Ticket #16187 (Crash in garbage collection) created by elizabeth.bond@…
[…]
2:03 PM Ticket #16179 (Crash in registration dialog) closed by Greg Couch
can't reproduce: wow
2:03 PM Ticket #16183 (Crash showing save dialog) closed by pett
duplicate
1:54 PM Ticket #16181 (Crash in event loop) closed by pett
can't reproduce
1:52 PM Ticket #16180 (Crash in Residue::connects_to() in alignment association) closed by pett
can't reproduce
1:50 PM Ticket #16186 ("xr true": xr.exception.HandleInvalidError: A supplied object handle ...) created by rkrishnan@…
[…]
1:39 PM Ticket #16178 (Crash in "build join peptide" (Residue::connects_to())) closed by pett
can't reproduce
1:36 PM Ticket #16177 (Crash in garbage collection) closed by pett
duplicate
1:33 PM Ticket #16175 (Cannot create profile) closed by pett
wontfix: Hi Qingning, ChimeraX is only supported on Windows 10 and 11. If it …
1:33 PM Ticket #16185 (Render by Attribute: attribute monitoring still on in dead tool) created by riyazbhat@…
[…]
1:08 PM NIAID2024 edited by Elaine Meng
(diff)
1:05 PM NIAID2024 edited by Elaine Meng
(diff)
12:03 PM 2024-10-24 edited by Tom Goddard
(diff)
10:55 AM Ticket #16173 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by pett
duplicate: Duplicate of #15753
9:26 AM Ticket #16184 (Volume not appearing) created by ilina.ivanova@…
[…]
8:40 AM Ticket #16183 (Crash showing save dialog) created by chimerax-bug-report@…
[…]
8:33 AM Ticket #16182 (Crash showing save dialog) created by chimerax-bug-report@…
[…]
6:52 AM Ticket #16181 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:57 AM Ticket #16180 (Crash in Residue::connects_to() in alignment association) created by chimerax-bug-report@…
[…]
5:50 AM Ticket #16179 (Crash in registration dialog) created by chimerax-bug-report@…
[…]
4:59 AM Ticket #16178 (Crash in "build join peptide" (Residue::connects_to())) created by chimerax-bug-report@…
[…]

Oct 23, 2024:

9:31 PM Ticket #16177 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
9:18 PM Ticket #16176 (Error in glBufferData) created by chimerax-bug-report@…
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6:06 PM Ticket #16175 (Cannot create profile) created by yuanqingning@…
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3:41 PM Training edited by Tom Goddard
(diff)
2:37 PM phenix-10-24-24 edited by pett
(diff)
2:36 PM phenix-10-24-24 edited by pett
(diff)
2:34 PM phenix-10-24-24 edited by pett
(diff)
2:33 PM phenix-10-24-24 edited by pett
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2:16 PM phenix-10-24-24 edited by pett
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2:11 PM phenix-10-24-24 edited by pett
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1:59 PM Ticket #16174 (ISOLDE: sim start: Error compiling kernel) created by shfan@…
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1:57 PM phenix-10-24-24 edited by pett
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1:50 PM phenix-10-24-24 edited by pett
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1:45 PM phenix-10-24-24 edited by pett
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1:33 PM phenix-10-24-24 edited by pett
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1:23 PM phenix-10-24-24 created by pett
1:22 PM Features edited by pett
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12:56 PM Ticket #16171 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
12:36 PM Ticket #16173 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by chimerax-bug-report@…
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12:25 PM Ticket #16172 (ISOLDE: structure contains 'LP' (lone pair) element) created by chimerax-bug-report@…
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11:58 AM Ticket #16171 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
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11:11 AM Ticket #16170 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by pett
duplicate: Duplicate of #15753
11:09 AM Ticket #16169 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by pett
duplicate: Duplicate of #15753
10:33 AM Ticket #16167 (Map settings: numpy array comparison) closed by Tom Goddard
fixed: Fixed. Very obscure error caused by using volume tilted slab mouse …
9:56 AM Ticket #16166 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This crash in the Qt 6.6 window toolkit happens when unplugging or …
9:40 AM Ticket #16170 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by chimerax-bug-report@…
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9:37 AM Ticket #16169 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by chimerax-bug-report@…
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8:59 AM Ticket #16168 (Crash in event loop) closed by pett
can't reproduce
8:59 AM ChangeLog edited by Elaine Meng
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8:51 AM ChangeLog edited by Elaine Meng
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8:51 AM Ticket #16165 (swapaa: DunbrackRotamerLibrary' object has no attribute 'display_name') closed by pett
duplicate: Hi Samira, Thanks for reporting this problem. It has been fixed in …
7:58 AM Ticket #16168 (Crash in event loop) created by chimerax-bug-report@…
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4:39 AM Ticket #16167 (Map settings: numpy array comparison) created by pavol.harar@…
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2:43 AM Ticket #16166 (Crash on Mac waking from sleep) created by laura.lp.iq@…
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2:02 AM Ticket #16165 (swapaa: DunbrackRotamerLibrary' object has no attribute 'display_name') created by samira.alsadi@…
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