![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 11 months ago
Closed 11 months ago
#16313 closed defect (can't reproduce)
Crash in Qt rendering after opening a bazillion sequence viewers
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.5.2-arm64-arm-64bit
ChimeraX Version: 1.9.dev202407140612 (2024-07-14 06:12:12 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x0000000206ce6080 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 329 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1037 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1200 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.alignment_algs._nw (total: 57)
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"procRole" : "Foreground",
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"incident" : "E0CB5923-270A-4222-B6BB-439D89D727AF",
"pid" : 1630,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-11-06 17:32:05.4303 -0700",
"procStartAbsTime" : 9256130907,
"procExitAbsTime" : 2539879548513,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "774140C4-5666-10FC-43B6-C4F3AD708ED8",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 6827,
"sleepWakeUUID" : "29254AE4-3190-4F99-A262-9B10B9B3BC11",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"ChimeraX","byPid":1630},
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"faultingThread" : 0,
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===== Log before crash start =====
UCSF ChimeraX version: 1.9.dev202407140612 (2024-07-14)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/jnwachuk/Desktop/Model
> Angelo/cryosparc_P3_J332_003_volume_map_sharp(8).mrc"
Opened cryosparc_P3_J332_003_volume_map_sharp(8).mrc as #1, grid size
512,512,512, pixel 0.75, shown at level 0.363, step 2, values float32
> open "/Users/jnwachuk/Desktop/Model Angelo/job002.cif"
Summary of feedback from opening /Users/jnwachuk/Desktop/Model
Angelo/job002.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for job002.cif #2
---
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> lighting soft
> lighting full
> style stick
Changed 131652 atom styles
> show cartoons
> save /Users/jnwachuk/Desktop/image107.png supersample 3
> hide #!1 models
> show #!1 models
> hide #!1 models
> save /Users/jnwachuk/Desktop/image108.png supersample 3
> show #!1 models
> hide #2 models
> lighting soft
> save /Users/jnwachuk/Desktop/image109.png supersample 3
> surface dust #1 size 7.5
> save /Users/jnwachuk/Desktop/image110.png supersample 3
> lighting soft
> lighting full
> lighting soft
> lighting full
> lighting soft
> lighting full
> lighting soft
> lighting full
> save /Users/jnwachuk/Desktop/image111.png supersample 3
> show #2 models
> select add #1
2 models selected
> select subtract #1
Nothing selected
> hide #!1 models
> select /all
Nothing selected
> select /
Expected an objects specifier or a keyword
> select /#1
Expected an objects specifier or a keyword
> open "/Users/jnwachuk/Desktop/Model Angelo/job002.cif"
Summary of feedback from opening /Users/jnwachuk/Desktop/Model
Angelo/job002.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for job002.cif #3
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
5 | No description available
6 | No description available
7 JQ | No description available
9 A8 | No description available
A | No description available
A0 E0 | No description available
A2 u | No description available
A3 BW | No description available
A6 Cm EJ | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG AZ Dj | No description available
AI | No description available
AL L5 MH Mw | No description available
AM IH | No description available
AN | No description available
AS C7 | No description available
AT | No description available
AY | No description available
Ab | No description available
Ah | No description available
Ai | No description available
An | No description available
Ao Dr | No description available
Ap | No description available
At | No description available
Ay BF | No description available
Az | No description available
B | No description available
B1 Bi JG K2 LK | No description available
B4 | No description available
B7 Bh | No description available
BD | No description available
BE Be j | No description available
BI | No description available
BL | No description available
BS | No description available
BZ | No description available
Bd | No description available
Bg | No description available
Bw | No description available
By CA CS CX Ca Cd D6 DE ET Eg FK FU Jk KF KN Kv Lg Lh Mf | No description available
C | No description available
C2 Fa | No description available
C3 | No description available
CD EO | No description available
CG J9 LG La MN | No description available
CI | No description available
CJ Dt KI Kn Ko LA LX MI MU Mr NE Ns | No description available
CK | No description available
Cf EM s | No description available
Co DF d i | No description available
Cr | No description available
Cs | No description available
Cu | No description available
Cy | No description available
D | No description available
D4 Dn | No description available
DD | No description available
DV | No description available
Dk | No description available
Dy | No description available
EH Fu J2 JV Jd Kz L8 Ld Lx M5 NG | No description available
EW | No description available
EY | No description available
F | No description available
F0 | No description available
F1 | No description available
F2 | No description available
F3 | No description available
F4 | No description available
F5 | No description available
F6 | No description available
F7 | No description available
F8 | No description available
F9 | No description available
G | No description available
G0 | No description available
G1 | No description available
G2 | No description available
G3 | No description available
G4 | No description available
G5 | No description available
G6 | No description available
G7 | No description available
G8 | No description available
G9 | No description available
GA | No description available
GB | No description available
GC | No description available
GD | No description available
GE | No description available
GF | No description available
GG | No description available
GH | No description available
GI | No description available
GJ | No description available
GK | No description available
GL | No description available
GM | No description available
GN | No description available
GO | No description available
GP | No description available
GQ | No description available
GR | No description available
GS | No description available
GT | No description available
GU | No description available
GV | No description available
GW | No description available
GX | No description available
GY | No description available
GZ | No description available
Ga | No description available
Gb | No description available
Gc | No description available
Gd | No description available
Ge | No description available
Gf | No description available
Gg | No description available
Gh | No description available
Gi | No description available
Gj | No description available
Gk | No description available
Gl | No description available
Gm | No description available
Gn | No description available
Go | No description available
Gp | No description available
Gq | No description available
Gr | No description available
Gs | No description available
Gt | No description available
Gu | No description available
Gv | No description available
Gw | No description available
Gx | No description available
Gy | No description available
Gz | No description available
H | No description available
H0 | No description available
H1 | No description available
H2 | No description available
H3 | No description available
H4 | No description available
H5 | No description available
H6 | No description available
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H8 | No description available
H9 | No description available
HA | No description available
HB | No description available
HC | No description available
HD | No description available
HE | No description available
HF | No description available
HG | No description available
HH | No description available
HI | No description available
HJ | No description available
HK | No description available
HL | No description available
HM | No description available
HN | No description available
HO | No description available
HP | No description available
HQ | No description available
HR | No description available
HS | No description available
HT | No description available
HU | No description available
HV | No description available
HW | No description available
HX | No description available
HY | No description available
HZ | No description available
Ha | No description available
Hb | No description available
Hc | No description available
Hd | No description available
He | No description available
Hf | No description available
Hg | No description available
Hh | No description available
Hi | No description available
Hj | No description available
Hk | No description available
Hl | No description available
Hm | No description available
Hn | No description available
Ho | No description available
Hp | No description available
Hq | No description available
Hr | No description available
Hs | No description available
Ht | No description available
Hu | No description available
Hv | No description available
Hw | No description available
Hx | No description available
Hy | No description available
Hz | No description available
I | No description available
I0 | No description available
I1 | No description available
I2 | No description available
I3 | No description available
I4 | No description available
I5 | No description available
I6 | No description available
I7 | No description available
I8 | No description available
I9 | No description available
IA | No description available
IB | No description available
IC | No description available
ID | No description available
IE | No description available
IF | No description available
IG | No description available
II | No description available
IJ | No description available
IK | No description available
IL | No description available
IM | No description available
IN | No description available
IO | No description available
IP | No description available
IQ | No description available
IR | No description available
IS | No description available
IT | No description available
IU | No description available
IV | No description available
IW | No description available
IX | No description available
IY | No description available
IZ | No description available
Ia | No description available
Ib | No description available
Ic | No description available
Id | No description available
Ie | No description available
If | No description available
Ig | No description available
Ih | No description available
Ii | No description available
Ij | No description available
Ik | No description available
Il | No description available
Im | No description available
In | No description available
Io | No description available
Ip | No description available
Iq | No description available
Ir | No description available
Is | No description available
It | No description available
Iu | No description available
Iv | No description available
Iw | No description available
Ix | No description available
Iy | No description available
Iz | No description available
J | No description available
J0 KE | No description available
J1 | No description available
J3 | No description available
J4 | No description available
J5 Jx Kg | No description available
J6 Jz KK | No description available
J7 | No description available
JA | No description available
JB | No description available
JC | No description available
JD | No description available
JE | No description available
JF | No description available
JH | No description available
JI | No description available
JJ | No description available
JK | No description available
JL | No description available
JM | No description available
JN | No description available
JO | No description available
JP | No description available
JR | No description available
JS | No description available
JT | No description available
JU L2 L3 L4 L6 Lu MQ N2 | No description available
JW | No description available
JX Jr NZ | No description available
JY | No description available
JZ | No description available
Ja Op | No description available
Jb | No description available
Jc | No description available
Je | No description available
Jf | No description available
Jg | No description available
Jh | No description available
Ji | No description available
Jj | No description available
Jl | No description available
Jm | No description available
Jn | No description available
Jo | No description available
Jp | No description available
Jq | No description available
Js LW M6 M7 MX N8 NU Nl O3 OU OY | No description available
Jt | No description available
Ju | No description available
Jv | No description available
Jw | No description available
Jy | No description available
K | No description available
K1 Kl Ln Ly M4 MP N7 OV PA | No description available
K3 | No description available
K4 KD KQ L9 LH Lk MM | No description available
K7 | No description available
KA | No description available
KB Le Ma Mp N0 O6 | No description available
KC RC SG SM | No description available
KG | No description available
KH M8 On | No description available
KL Lp NH | No description available
KP | No description available
KS RG | No description available
Kb | No description available
Ke | No description available
Ki | No description available
Ku | No description available
Kx | No description available
Ky | No description available
L | No description available
L0 OB | No description available
LB | No description available
LD | No description available
LJ | No description available
LL | No description available
LM Nb | No description available
LO | No description available
LR | No description available
LT MJ N1 OG | No description available
LU | No description available
Li MC MD | No description available
Lm | No description available
Ls Nt SO | No description available
M | No description available
M1 | No description available
MG Qy | No description available
Mk | No description available
Mx | No description available
NJ | No description available
NY | No description available
Na | No description available
Nr | No description available
O | No description available
OJ | No description available
P0 | No description available
P1 | No description available
P2 | No description available
P3 | No description available
P4 | No description available
P5 | No description available
P6 | No description available
P7 | No description available
P8 | No description available
P9 | No description available
PK | No description available
PL | No description available
PM | No description available
PN | No description available
PO | No description available
PP | No description available
PQ | No description available
PR | No description available
PS | No description available
PT | No description available
PU | No description available
PV | No description available
PW | No description available
PX | No description available
PY | No description available
PZ | No description available
Pa | No description available
Pb | No description available
Pc | No description available
Pd | No description available
Pe | No description available
Pf | No description available
Pg | No description available
Ph | No description available
Pi | No description available
Pj | No description available
Pk | No description available
Pl | No description available
Pm | No description available
Pn | No description available
Po | No description available
Pp | No description available
Pq | No description available
Pr | No description available
Ps | No description available
Pt | No description available
Pu | No description available
Pv | No description available
Pw | No description available
Px | No description available
Py | No description available
Pz | No description available
Q | No description available
Q0 | No description available
Q1 | No description available
Q2 | No description available
Q3 | No description available
Q4 | No description available
Q5 | No description available
Q6 | No description available
Q7 | No description available
Q8 | No description available
Q9 | No description available
QA | No description available
QB | No description available
QC | No description available
QD | No description available
QE | No description available
QF | No description available
QG | No description available
QH | No description available
QI | No description available
QJ | No description available
QK | No description available
QL | No description available
QM | No description available
QN | No description available
QO | No description available
QP | No description available
QQ | No description available
QR | No description available
QS | No description available
QT | No description available
QU | No description available
QV | No description available
QW | No description available
QX | No description available
QY | No description available
QZ | No description available
Qa | No description available
Qb | No description available
Qc | No description available
Qd | No description available
Qe | No description available
Qf | No description available
Qg | No description available
Qh | No description available
Qi | No description available
Qj | No description available
Qk | No description available
Ql | No description available
Qm | No description available
Qn | No description available
Qo | No description available
Qp | No description available
Qq | No description available
Qr | No description available
Qs | No description available
Qt | No description available
Qu | No description available
Qv | No description available
Qw | No description available
Qx | No description available
Qz | No description available
R | No description available
R0 | No description available
R1 | No description available
R2 | No description available
R3 | No description available
R4 | No description available
R5 | No description available
R6 | No description available
R7 | No description available
R8 | No description available
R9 | No description available
RA | No description available
RB | No description available
RD | No description available
RE | No description available
RF | No description available
RH | No description available
RI | No description available
RJ | No description available
RK | No description available
RL | No description available
RM | No description available
RN | No description available
RO SZ | No description available
RP | No description available
RQ | No description available
RR | No description available
RS | No description available
RT | No description available
RU | No description available
RV | No description available
RW | No description available
RX | No description available
RY | No description available
RZ | No description available
Ra | No description available
Rb | No description available
Rc | No description available
Rd | No description available
Re | No description available
Rf | No description available
Rg | No description available
Rh | No description available
Ri | No description available
Rj | No description available
Rk | No description available
Rl | No description available
Rm | No description available
Rn | No description available
Ro | No description available
Rp | No description available
Rq | No description available
Rr | No description available
Rs | No description available
Rt | No description available
Ru | No description available
Rv | No description available
Rw | No description available
Rx | No description available
Ry | No description available
Rz | No description available
S | No description available
SA | No description available
SB | No description available
SC | No description available
SD | No description available
SE | No description available
SF | No description available
SH | No description available
SI | No description available
SJ | No description available
SK | No description available
SL | No description available
SN | No description available
SP | No description available
SQ | No description available
SR | No description available
SS | No description available
ST | No description available
SU | No description available
SV | No description available
SW | No description available
SX | No description available
SY | No description available
Sa | No description available
Sb | No description available
Sc | No description available
Sd | No description available
Se | No description available
Sf | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
e | No description available
h | No description available
q | No description available
r | No description available
t | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> show #!1 models
> hide #!1 models
> hide #2 models
> show #2 models
> hide #3 models
> select /#2
Expected an objects specifier or a keyword
> select /#2
Expected an objects specifier or a keyword
> select #2
131652 atoms, 141235 bonds, 10210 residues, 1 model selected
Alignment identifier is 2/A
Alignment identifier is 2/B
Alignment identifier is 2/C
Alignment identifier is 2/D
Alignment identifier is 2/F
Alignment identifier is 2/G
Alignment identifier is 2/H
Alignment identifier is 2/I
Alignment identifier is 2/J
Alignment identifier is 2/K
Alignment identifier is 2/L
Alignment identifier is 2/M
Alignment identifier is 2/O
Alignment identifier is 2/Q
Alignment identifier is 2/R
Alignment identifier is 2/S
Alignment identifier is 2/U
Alignment identifier is 2/V
Alignment identifier is 2/W
Alignment identifier is 2/X
Alignment identifier is 2/Y
Alignment identifier is 2/Z
Alignment identifier is 2/a
Alignment identifier is 2/b
Alignment identifier is 2/c
Alignment identifier is 1
Alignment identifier is 2/e
Alignment identifier is 2/h
Alignment identifier is 2
Alignment identifier is 2/q
Alignment identifier is 2/r
Alignment identifier is 3
Alignment identifier is 2/t
Alignment identifier is 4
Alignment identifier is 2/v
Alignment identifier is 2/w
Alignment identifier is 2/x
Alignment identifier is 2/y
Alignment identifier is 2/z
Alignment identifier is 2/0
Alignment identifier is 2/1
Alignment identifier is 2/2
Alignment identifier is 2/5
Alignment identifier is 2/6
Alignment identifier is 5
Alignment identifier is 6
Alignment identifier is 2/AC
Alignment identifier is 2/AD
Alignment identifier is 2/AE
Alignment identifier is 2/AF
Alignment identifier is 7
Alignment identifier is 2/AI
Alignment identifier is 8
Alignment identifier is 9
Alignment identifier is 2/AN
Alignment identifier is 10
Alignment identifier is 2/AT
Alignment identifier is 2/AY
Alignment identifier is 2/Ab
Alignment identifier is 2/Ah
Alignment identifier is 2/Ai
Alignment identifier is 2/An
Alignment identifier is 11
Alignment identifier is 2/Ap
Alignment identifier is 2/At
Alignment identifier is 12
Alignment identifier is 2/Az
Alignment identifier is 13
Alignment identifier is 14
Alignment identifier is 15
Alignment identifier is 2/BD
Alignment identifier is 2/BI
Alignment identifier is 2/BL
Alignment identifier is 2/BS
Alignment identifier is 2/BZ
Alignment identifier is 2/Bd
Alignment identifier is 2/Bg
Alignment identifier is 16
Alignment identifier is 17
Alignment identifier is 2/Bw
Alignment identifier is 18
Alignment identifier is 2/B4
Alignment identifier is 19
Alignment identifier is 20
Alignment identifier is 2/CI
Alignment identifier is 21
Alignment identifier is 2/CK
Alignment identifier is 2/Cr
Alignment identifier is 2/Cs
Alignment identifier is 2/Cu
Alignment identifier is 2/Cy
Alignment identifier is 22
Alignment identifier is 2/C3
Alignment identifier is 2/DD
Alignment identifier is 2/DV
Alignment identifier is 2/Dk
Alignment identifier is 23
Alignment identifier is 2/Dy
Alignment identifier is 24
Alignment identifier is 2/EW
Alignment identifier is 2/EY
Alignment identifier is 2/F0
Alignment identifier is 2/F1
Alignment identifier is 2/F2
Alignment identifier is 2/F3
Alignment identifier is 2/F4
Alignment identifier is 2/F5
Alignment identifier is 2/F6
Alignment identifier is 2/F7
Alignment identifier is 2/F8
Alignment identifier is 2/F9
Alignment identifier is 2/GA
Alignment identifier is 2/GB
Alignment identifier is 2/GC
Alignment identifier is 2/GD
Alignment identifier is 2/GE
Alignment identifier is 2/GF
Alignment identifier is 2/GG
Alignment identifier is 2/GH
Alignment identifier is 2/GI
Alignment identifier is 2/GJ
Alignment identifier is 2/GK
Alignment identifier is 2/GL
Alignment identifier is 2/GM
Alignment identifier is 2/GN
Alignment identifier is 2/GO
Alignment identifier is 2/GP
Alignment identifier is 2/GQ
Alignment identifier is 2/GR
Alignment identifier is 2/GS
Alignment identifier is 2/GT
Alignment identifier is 2/GU
Alignment identifier is 2/GV
Alignment identifier is 2/GW
Alignment identifier is 2/GX
Alignment identifier is 2/GY
Alignment identifier is 2/GZ
Alignment identifier is 2/Ga
Alignment identifier is 2/Gb
Alignment identifier is 2/Gc
Alignment identifier is 2/Gd
Alignment identifier is 2/Ge
Alignment identifier is 2/Gf
Alignment identifier is 2/Gg
Alignment identifier is 2/Gh
Alignment identifier is 2/Gi
Alignment identifier is 2/Gj
Alignment identifier is 2/Gk
Alignment identifier is 2/Gl
Alignment identifier is 2/Gm
Alignment identifier is 2/Gn
Alignment identifier is 2/Go
Alignment identifier is 2/Gp
Alignment identifier is 2/Gq
Alignment identifier is 2/Gr
Alignment identifier is 2/Gs
Alignment identifier is 2/Gt
Alignment identifier is 2/Gu
Alignment identifier is 2/Gv
Alignment identifier is 2/Gw
Alignment identifier is 2/Gx
Alignment identifier is 2/Gy
Alignment identifier is 2/Gz
Alignment identifier is 2/G0
Alignment identifier is 2/G1
Alignment identifier is 2/G2
Alignment identifier is 2/G3
Alignment identifier is 2/G4
Alignment identifier is 2/G5
Alignment identifier is 2/G6
Alignment identifier is 2/G7
Alignment identifier is 2/G8
Alignment identifier is 2/G9
Alignment identifier is 2/HA
Alignment identifier is 2/HB
Alignment identifier is 2/HC
Alignment identifier is 2/HD
Alignment identifier is 2/HE
Alignment identifier is 2/HF
Alignment identifier is 2/HG
Alignment identifier is 2/HH
Alignment identifier is 2/HI
Alignment identifier is 2/HJ
Alignment identifier is 2/HK
Alignment identifier is 2/HL
Alignment identifier is 2/HM
Alignment identifier is 2/HN
Alignment identifier is 2/HO
Alignment identifier is 2/HP
Alignment identifier is 2/HQ
Alignment identifier is 2/HR
Alignment identifier is 2/HS
Alignment identifier is 2/HT
Alignment identifier is 2/HU
Alignment identifier is 2/HV
Alignment identifier is 2/HW
Alignment identifier is 2/HX
Alignment identifier is 2/HY
Alignment identifier is 2/HZ
Alignment identifier is 2/Ha
Alignment identifier is 2/Hb
Alignment identifier is 2/Hc
Alignment identifier is 2/Hd
Alignment identifier is 2/He
Alignment identifier is 2/Hf
Alignment identifier is 2/Hg
Alignment identifier is 2/Hh
Alignment identifier is 2/Hi
Alignment identifier is 2/Hj
Alignment identifier is 2/Hk
Alignment identifier is 2/Hl
Alignment identifier is 2/Hm
Alignment identifier is 2/Hn
Alignment identifier is 2/Ho
Alignment identifier is 2/Hp
Alignment identifier is 2/Hq
Alignment identifier is 2/Hr
Alignment identifier is 2/Hs
Alignment identifier is 2/Ht
Alignment identifier is 2/Hu
Alignment identifier is 2/Hv
Alignment identifier is 2/Hw
Alignment identifier is 2/Hx
Alignment identifier is 2/Hy
Alignment identifier is 2/Hz
Alignment identifier is 2/H0
Alignment identifier is 2/H1
Alignment identifier is 2/H2
Alignment identifier is 2/H3
Alignment identifier is 2/H4
Alignment identifier is 2/H5
Alignment identifier is 2/H6
Alignment identifier is 2/H7
Alignment identifier is 2/H8
Alignment identifier is 2/H9
Alignment identifier is 2/IA
Alignment identifier is 2/IB
Alignment identifier is 2/IC
Alignment identifier is 2/ID
Alignment identifier is 2/IE
Alignment identifier is 2/IF
Alignment identifier is 2/IG
Alignment identifier is 2/II
Alignment identifier is 2/IJ
Alignment identifier is 2/IK
Alignment identifier is 2/IL
Alignment identifier is 2/IM
Alignment identifier is 2/IN
Alignment identifier is 2/IO
Alignment identifier is 2/IP
Alignment identifier is 2/IQ
Alignment identifier is 2/IR
Alignment identifier is 2/IS
Alignment identifier is 2/IT
Alignment identifier is 2/IU
Alignment identifier is 2/IV
Alignment identifier is 2/IW
Alignment identifier is 2/IX
Alignment identifier is 2/IY
Alignment identifier is 2/IZ
Alignment identifier is 2/Ia
Alignment identifier is 2/Ib
Alignment identifier is 2/Ic
Alignment identifier is 2/Id
Alignment identifier is 2/Ie
Alignment identifier is 2/If
Alignment identifier is 2/Ig
Alignment identifier is 2/Ih
Alignment identifier is 2/Ii
Alignment identifier is 2/Ij
Alignment identifier is 2/Ik
Alignment identifier is 2/Il
Alignment identifier is 2/Im
Alignment identifier is 2/In
Alignment identifier is 2/Io
Alignment identifier is 2/Ip
Alignment identifier is 2/Iq
Alignment identifier is 2/Ir
Alignment identifier is 2/Is
Alignment identifier is 2/It
Alignment identifier is 2/Iu
Alignment identifier is 2/Iv
Alignment identifier is 2/Iw
Alignment identifier is 2/Ix
Alignment identifier is 2/Iy
Alignment identifier is 2/Iz
Alignment identifier is 2/I0
Alignment identifier is 2/I1
Alignment identifier is 2/I2
Alignment identifier is 2/I3
Alignment identifier is 2/I4
Alignment identifier is 2/I5
Alignment identifier is 2/I6
Alignment identifier is 2/I7
Alignment identifier is 2/I8
Alignment identifier is 2/I9
Alignment identifier is 2/JA
Alignment identifier is 2/JB
Alignment identifier is 2/JC
Alignment identifier is 2/JD
Alignment identifier is 2/JE
Alignment identifier is 2/JF
Alignment identifier is 2/JH
Alignment identifier is 2/JI
Alignment identifier is 2/JJ
Alignment identifier is 2/JK
Alignment identifier is 2/JL
Alignment identifier is 2/JM
Alignment identifier is 2/JN
Alignment identifier is 2/JO
Alignment identifier is 2/JP
Alignment identifier is 2/JR
Alignment identifier is 2/JS
Alignment identifier is 2/JT
Alignment identifier is 25
Alignment identifier is 2/JW
Alignment identifier is 26
Alignment identifier is 2/JY
Alignment identifier is 2/JZ
Alignment identifier is 27
Alignment identifier is 2/Jb
Alignment identifier is 2/Jc
Alignment identifier is 2/Je
Alignment identifier is 2/Jf
Alignment identifier is 2/Jg
Alignment identifier is 2/Jh
Alignment identifier is 2/Ji
Alignment identifier is 2/Jj
Alignment identifier is 2/Jl
Alignment identifier is 2/Jm
Alignment identifier is 2/Jn
Alignment identifier is 2/Jo
Alignment identifier is 2/Jp
Alignment identifier is 2/Jq
Alignment identifier is 28
Alignment identifier is 2/Jt
Alignment identifier is 2/Ju
Alignment identifier is 2/Jv
Alignment identifier is 2/Jw
Alignment identifier is 29
Alignment identifier is 2/Jy
Alignment identifier is 30
Alignment identifier is 31
Alignment identifier is 2/J1
Alignment identifier is 2/J3
Alignment identifier is 2/J4
Alignment identifier is 2/J7
Alignment identifier is 2/KA
Alignment identifier is 32
Alignment identifier is 33
Alignment identifier is 34
Alignment identifier is 2/KG
Alignment identifier is 35
Alignment identifier is 36
Alignment identifier is 2/KP
Alignment identifier is 37
Alignment identifier is 2/Kb
Alignment identifier is 2/Ke
Alignment identifier is 2/Ki
Alignment identifier is 38
Alignment identifier is 2/Ku
Alignment identifier is 2/Kx
Alignment identifier is 2/Ky
Alignment identifier is 2/K3
Alignment identifier is 2/K7
Alignment identifier is 2/LB
Alignment identifier is 2/LD
Alignment identifier is 2/LJ
Alignment identifier is 2/LL
Alignment identifier is 39
Alignment identifier is 2/LO
Alignment identifier is 2/LR
Alignment identifier is 40
Alignment identifier is 2/LU
Alignment identifier is 41
Alignment identifier is 2/Lm
Alignment identifier is 42
Alignment identifier is 43
Alignment identifier is 44
Alignment identifier is 2/Mk
Alignment identifier is 2/Mx
Alignment identifier is 2/M1
Alignment identifier is 2/NJ
Alignment identifier is 2/NY
Alignment identifier is 2/Na
Alignment identifier is 2/Nr
Alignment identifier is 2/OJ
Alignment identifier is 2/PK
Alignment identifier is 2/PL
Alignment identifier is 2/PM
Alignment identifier is 2/PN
Alignment identifier is 2/PO
Alignment identifier is 2/PP
Alignment identifier is 2/PQ
Alignment identifier is 2/PR
Alignment identifier is 2/PS
Alignment identifier is 2/PT
Alignment identifier is 2/PU
Alignment identifier is 2/PV
Alignment identifier is 2/PW
Alignment identifier is 2/PX
Alignment identifier is 2/PY
Alignment identifier is 2/PZ
Alignment identifier is 2/Pa
Alignment identifier is 2/Pb
Alignment identifier is 2/Pc
Alignment identifier is 2/Pd
Alignment identifier is 2/Pe
Alignment identifier is 2/Pf
Alignment identifier is 2/Pg
Alignment identifier is 2/Ph
Alignment identifier is 2/Pi
Alignment identifier is 2/Pj
Alignment identifier is 2/Pk
Alignment identifier is 2/Pl
Alignment identifier is 2/Pm
Alignment identifier is 2/Pn
Alignment identifier is 2/Po
Alignment identifier is 2/Pp
Alignment identifier is 2/Pq
Alignment identifier is 2/Pr
Alignment identifier is 2/Ps
Alignment identifier is 2/Pt
Alignment identifier is 2/Pu
Alignment identifier is 2/Pv
Alignment identifier is 2/Pw
Alignment identifier is 2/Px
Alignment identifier is 2/Py
Alignment identifier is 2/Pz
Alignment identifier is 2/P0
Alignment identifier is 2/P1
Alignment identifier is 2/P2
Alignment identifier is 2/P3
Alignment identifier is 2/P4
Alignment identifier is 2/P5
Alignment identifier is 2/P6
Alignment identifier is 2/P7
Alignment identifier is 2/P8
Alignment identifier is 2/P9
Alignment identifier is 2/QA
Alignment identifier is 2/QB
Alignment identifier is 2/QC
Alignment identifier is 2/QD
Alignment identifier is 2/QE
Alignment identifier is 2/QF
Alignment identifier is 2/QG
Alignment identifier is 2/QH
Alignment identifier is 2/QI
Alignment identifier is 2/QJ
Alignment identifier is 2/QK
Alignment identifier is 2/QL
Alignment identifier is 2/QM
Alignment identifier is 2/QN
Alignment identifier is 2/QO
Alignment identifier is 2/QP
Alignment identifier is 2/QQ
Alignment identifier is 2/QR
Alignment identifier is 2/QS
Alignment identifier is 2/QT
Alignment identifier is 2/QU
Alignment identifier is 2/QV
Alignment identifier is 2/QW
Alignment identifier is 2/QX
Alignment identifier is 2/QY
Alignment identifier is 2/QZ
Alignment identifier is 2/Qa
Alignment identifier is 2/Qb
Alignment identifier is 2/Qc
Alignment identifier is 2/Qd
Alignment identifier is 2/Qe
Alignment identifier is 2/Qf
Alignment identifier is 2/Qg
Alignment identifier is 2/Qh
Alignment identifier is 2/Qi
Alignment identifier is 2/Qj
Alignment identifier is 2/Qk
Alignment identifier is 2/Ql
Alignment identifier is 2/Qm
Alignment identifier is 2/Qn
Alignment identifier is 2/Qo
Alignment identifier is 2/Qp
Alignment identifier is 2/Qq
Alignment identifier is 2/Qr
Alignment identifier is 2/Qs
Alignment identifier is 2/Qt
Alignment identifier is 2/Qu
Alignment identifier is 2/Qv
Alignment identifier is 2/Qw
Alignment identifier is 2/Qx
Alignment identifier is 2/Qz
Alignment identifier is 2/Q0
Alignment identifier is 2/Q1
Alignment identifier is 2/Q2
Alignment identifier is 2/Q3
Alignment identifier is 2/Q4
Alignment identifier is 2/Q5
Alignment identifier is 2/Q6
Alignment identifier is 2/Q7
Alignment identifier is 2/Q8
Alignment identifier is 2/Q9
Alignment identifier is 2/RA
Alignment identifier is 2/RB
Alignment identifier is 2/RD
Alignment identifier is 2/RE
Alignment identifier is 2/RF
Alignment identifier is 2/RH
Alignment identifier is 2/RI
Alignment identifier is 2/RJ
Alignment identifier is 2/RK
Alignment identifier is 2/RL
Alignment identifier is 2/RM
Alignment identifier is 2/RN
Alignment identifier is 45
Alignment identifier is 2/RP
Alignment identifier is 2/RQ
Alignment identifier is 2/RR
Alignment identifier is 2/RS
Alignment identifier is 2/RT
Alignment identifier is 2/RU
Alignment identifier is 2/RV
Alignment identifier is 2/RW
Alignment identifier is 2/RX
Alignment identifier is 2/RY
Alignment identifier is 2/RZ
Alignment identifier is 2/Ra
Alignment identifier is 2/Rb
Alignment identifier is 2/Rc
Alignment identifier is 2/Rd
Alignment identifier is 2/Re
Alignment identifier is 2/Rf
Alignment identifier is 2/Rg
Alignment identifier is 2/Rh
Alignment identifier is 2/Ri
Alignment identifier is 2/Rj
Alignment identifier is 2/Rk
Alignment identifier is 2/Rl
Alignment identifier is 2/Rm
Alignment identifier is 2/Rn
Alignment identifier is 2/Ro
Alignment identifier is 2/Rp
Alignment identifier is 2/Rq
Alignment identifier is 2/Rr
Alignment identifier is 2/Rs
Alignment identifier is 2/Rt
Alignment identifier is 2/Ru
Alignment identifier is 2/Rv
Alignment identifier is 2/Rw
Alignment identifier is 2/Rx
Alignment identifier is 2/Ry
Alignment identifier is 2/Rz
Alignment identifier is 2/R0
Alignment identifier is 2/R1
Alignment identifier is 2/R2
Alignment identifier is 2/R3
Alignment identifier is 2/R4
Alignment identifier is 2/R5
Alignment identifier is 2/R6
Alignment identifier is 2/R7
Alignment identifier is 2/R8
Alignment identifier is 2/R9
Alignment identifier is 2/SA
Alignment identifier is 2/SB
Alignment identifier is 2/SC
Alignment identifier is 2/SD
Alignment identifier is 2/SE
Alignment identifier is 2/SF
Alignment identifier is 2/SH
Alignment identifier is 2/SI
Alignment identifier is 2/SJ
Alignment identifier is 2/SK
Alignment identifier is 2/SL
Alignment identifier is 2/SN
Alignment identifier is 2/SP
Alignment identifier is 2/SQ
Alignment identifier is 2/SR
Alignment identifier is 2/SS
Alignment identifier is 2/ST
Alignment identifier is 2/SU
Alignment identifier is 2/SV
Alignment identifier is 2/SW
Alignment identifier is 2/SX
Alignment identifier is 2/SY
Alignment identifier is 2/Sa
Alignment identifier is 2/Sb
Alignment identifier is 2/Sc
Alignment identifier is 2/Sd
Alignment identifier is 2/Se
Alignment identifier is 2/Sf
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.9.dev202407140612 (2024-07-14)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/jnwachuk/Desktop/Model Angelo/job002.cif"
Summary of feedback from opening /Users/jnwachuk/Desktop/Model
Angelo/job002.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for job002.cif #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
5 | No description available
6 | No description available
7 JQ | No description available
9 A8 | No description available
A | No description available
A0 E0 | No description available
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AF | No description available
AG AZ Dj | No description available
AI | No description available
AL L5 MH Mw | No description available
AM IH | No description available
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AS C7 | No description available
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Ap | No description available
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Ay BF | No description available
Az | No description available
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B1 Bi JG K2 LK | No description available
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B7 Bh | No description available
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BE Be j | No description available
BI | No description available
BL | No description available
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Bg | No description available
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By CA CS CX Ca Cd D6 DE ET Eg FK FU Jk KF KN Kv Lg Lh Mf | No description available
C | No description available
C2 Fa | No description available
C3 | No description available
CD EO | No description available
CG J9 LG La MN | No description available
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CJ Dt KI Kn Ko LA LX MI MU Mr NE Ns | No description available
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Co DF d i | No description available
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EH Fu J2 JV Jd Kz L8 Ld Lx M5 NG | No description available
EW | No description available
EY | No description available
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GN | No description available
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GW | No description available
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Gl | No description available
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Gp | No description available
Gq | No description available
Gr | No description available
Gs | No description available
Gt | No description available
Gu | No description available
Gv | No description available
Gw | No description available
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Gy | No description available
Gz | No description available
H | No description available
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HX | No description available
HY | No description available
HZ | No description available
Ha | No description available
Hb | No description available
Hc | No description available
Hd | No description available
He | No description available
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Hg | No description available
Hh | No description available
Hi | No description available
Hj | No description available
Hk | No description available
Hl | No description available
Hm | No description available
Hn | No description available
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Hp | No description available
Hq | No description available
Hr | No description available
Hs | No description available
Ht | No description available
Hu | No description available
Hv | No description available
Hw | No description available
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Hy | No description available
Hz | No description available
I | No description available
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I3 | No description available
I4 | No description available
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I6 | No description available
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IB | No description available
IC | No description available
ID | No description available
IE | No description available
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IG | No description available
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IJ | No description available
IK | No description available
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IM | No description available
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IO | No description available
IP | No description available
IQ | No description available
IR | No description available
IS | No description available
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IW | No description available
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IY | No description available
IZ | No description available
Ia | No description available
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Ic | No description available
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If | No description available
Ig | No description available
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J5 Jx Kg | No description available
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JU L2 L3 L4 L6 Lu MQ N2 | No description available
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JX Jr NZ | No description available
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JZ | No description available
Ja Op | No description available
Jb | No description available
Jc | No description available
Je | No description available
Jf | No description available
Jg | No description available
Jh | No description available
Ji | No description available
Jj | No description available
Jl | No description available
Jm | No description available
Jn | No description available
Jo | No description available
Jp | No description available
Jq | No description available
Js LW M6 M7 MX N8 NU Nl O3 OU OY | No description available
Jt | No description available
Ju | No description available
Jv | No description available
Jw | No description available
Jy | No description available
K | No description available
K1 Kl Ln Ly M4 MP N7 OV PA | No description available
K3 | No description available
K4 KD KQ L9 LH Lk MM | No description available
K7 | No description available
KA | No description available
KB Le Ma Mp N0 O6 | No description available
KC RC SG SM | No description available
KG | No description available
KH M8 On | No description available
KL Lp NH | No description available
KP | No description available
KS RG | No description available
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Ke | No description available
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Kx | No description available
Ky | No description available
L | No description available
L0 OB | No description available
LB | No description available
LD | No description available
LJ | No description available
LL | No description available
LM Nb | No description available
LO | No description available
LR | No description available
LT MJ N1 OG | No description available
LU | No description available
Li MC MD | No description available
Lm | No description available
Ls Nt SO | No description available
M | No description available
M1 | No description available
MG Qy | No description available
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NJ | No description available
NY | No description available
Na | No description available
Nr | No description available
O | No description available
OJ | No description available
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PK | No description available
PL | No description available
PM | No description available
PN | No description available
PO | No description available
PP | No description available
PQ | No description available
PR | No description available
PS | No description available
PT | No description available
PU | No description available
PV | No description available
PW | No description available
PX | No description available
PY | No description available
PZ | No description available
Pa | No description available
Pb | No description available
Pc | No description available
Pd | No description available
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Pi | No description available
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Pk | No description available
Pl | No description available
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Pn | No description available
Po | No description available
Pp | No description available
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Pr | No description available
Ps | No description available
Pt | No description available
Pu | No description available
Pv | No description available
Pw | No description available
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Py | No description available
Pz | No description available
Q | No description available
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QA | No description available
QB | No description available
QC | No description available
QD | No description available
QE | No description available
QF | No description available
QG | No description available
QH | No description available
QI | No description available
QJ | No description available
QK | No description available
QL | No description available
QM | No description available
QN | No description available
QO | No description available
QP | No description available
QQ | No description available
QR | No description available
QS | No description available
QT | No description available
QU | No description available
QV | No description available
QW | No description available
QX | No description available
QY | No description available
QZ | No description available
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Qc | No description available
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Qg | No description available
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Qi | No description available
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Qs | No description available
Qt | No description available
Qu | No description available
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R | No description available
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RE | No description available
RF | No description available
RH | No description available
RI | No description available
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RK | No description available
RL | No description available
RM | No description available
RN | No description available
RO SZ | No description available
RP | No description available
RQ | No description available
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RS | No description available
RT | No description available
RU | No description available
RV | No description available
RW | No description available
RX | No description available
RY | No description available
RZ | No description available
Ra | No description available
Rb | No description available
Rc | No description available
Rd | No description available
Re | No description available
Rf | No description available
Rg | No description available
Rh | No description available
Ri | No description available
Rj | No description available
Rk | No description available
Rl | No description available
Rm | No description available
Rn | No description available
Ro | No description available
Rp | No description available
Rq | No description available
Rr | No description available
Rs | No description available
Rt | No description available
Ru | No description available
Rv | No description available
Rw | No description available
Rx | No description available
Ry | No description available
Rz | No description available
S | No description available
SA | No description available
SB | No description available
SC | No description available
SD | No description available
SE | No description available
SF | No description available
SH | No description available
SI | No description available
SJ | No description available
SK | No description available
SL | No description available
SN | No description available
SP | No description available
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SS | No description available
ST | No description available
SU | No description available
SV | No description available
SW | No description available
SX | No description available
SY | No description available
Sa | No description available
Sb | No description available
Sc | No description available
Sd | No description available
Se | No description available
Sf | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
e | No description available
h | No description available
q | No description available
r | No description available
t | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.0, Qt 6.7.1
Qt runtime version: 6.7.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,9
Model Number: Z17G002HTLL/A
Chip: Apple M2 Pro
Total Number of Cores: 10 (6 performance and 4 efficiency)
Memory: 32 GB
System Firmware Version: 10151.1.1
OS Loader Version: 8422.141.2
Software:
System Software Overview:
System Version: macOS 13.5.2 (22G91)
Kernel Version: Darwin 22.6.0
Time since boot: 7 days, 23 hours, 27 minutes
Graphics/Displays:
Apple M2 Pro:
Chipset Model: Apple M2 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.13
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.3
ChimeraX-AtomicLibrary: 14.1.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9.dev202407140612
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-DeepMutationalScan: 1.0
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-Foldseek: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.2
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.7
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.5
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.1.5
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.12.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.3
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.17
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.7
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.2
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.1
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.3
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.1
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt_toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
Pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject_hooks: 1.1.0
PyQt6-commercial: 6.7.0
PyQt6-Qt6: 6.7.2
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.2
PyQt6-WebEngineSubwheel-Qt6: 6.7.2
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.2
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
Sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia_utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing_extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.2
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 11 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in Qt rendering after opening a bazillion sequence viewers |
comment:2 by , 11 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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AFAIK, the user needs to specifically allow that many sequence viewers to be created.