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Opened 11 months ago
Closed 11 months ago
#16360 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.7-arm64-arm-64bit
ChimeraX Version: 1.8rc202405140121 (2024-05-14 01:21:02 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001fa46e100 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in __iter__
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/split.py", line 264 in atom_residues
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/split.py", line 206 in molecule_from_atoms
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/split.py", line 100 in
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/split.py", line 100 in split_molecule
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/split.py", line 63 in split
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3209 in run
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 319 in execute
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 146 in keyPressEvent
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 285 in event_loop
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1006 in init
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1169 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, lxml._elementpath, lxml.etree, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize (total: 59)
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"procLaunch" : "2024-11-22 18:09:13.2829 +0000",
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"procPath" : "\/Applications\/ChimeraX.app\/Contents\/MacOS\/ChimeraX",
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"exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
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"name" : "libqsvg.dylib"
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"name" : "libqpdf.dylib"
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"name" : "numpy_formathandler.cpython-311-darwin.so"
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"path" : "\/Applications\/ChimeraX.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
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"name" : "_pdbio.cpython-311-darwin.so"
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"name" : "mmcif.cpython-311-darwin.so"
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},
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"name" : "_version.cpython-311-darwin.so"
},
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"arch" : "arm64",
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"uuid" : "87eed069-25fc-30f6-aa30-1e54859d92e2",
"path" : "\/Applications\/ChimeraX.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
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},
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"name" : "_cmsgpack.cpython-311-darwin.so"
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"uuid" : "b7e7745c-591e-3260-a098-888499cc833d",
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"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
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}
===== Log before crash start =====
UCSF ChimeraX version: 1.8rc202405140121 (2024-05-14)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/adminndavey/Downloads/FAT_DOMAIN (1).pdb"
23 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
5 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
6 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
8 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
19 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Chain information for FAT_DOMAIN (1).pdb
---
Chain | Description
1.1/0 | 1OW6_A_D
1.2/1 | 3RF3_A_C
1.3/2 | 1OW8_C_F
1.4/3 | 1OW8_A_D
1.5/4 | 3B71_B_E
1.6/5 | 3U3F_C_G
1.7/6 | 3S90_B_D
1.8/7 | 4XEK_A_C
1.9/8 | 1OW6_C_F
1.10/9 | 3TJ6_A_B
1.1/D 1.4/D 1.11/D 1.26/D | No description available
1.2/D | No description available
1.3/D | No description available
1.5/D 1.9/D 1.27/D | No description available
1.6/D 1.28/D | No description available
1.7/D | No description available
1.8/D | No description available
1.10/D | No description available
1.12/D | No description available
1.13/D | No description available
1.14/D | No description available
1.15/D | No description available
1.16/D | No description available
1.17/D | No description available
1.18/D | No description available
1.19/D 1.20/D | No description available
1.21/D | No description available
1.22/D | No description available
1.23/D | No description available
1.24/D | No description available
1.25/D | No description available
1.11/a | 3B71_A_D
1.12/b | 4XEF_D_F
1.13/c | 3U3F_A_I
1.14/d | 1XWJ_A_B
1.15/e | 4XEF_A_C
1.16/f | 3GM1_A_F
1.17/g | 3RF3_B_D
1.18/h | 4XEV_A_C
1.19/i | 5W93_A_D
1.20/j | 5W93_B_E
1.21/k | 3U3F_B_J
1.22/l | 4R32_A_C
1.23/m | 6PW8_A_B
1.24/n | 4XEV_D_F
1.25/o | 3GM1_B_D
1.26/p | 1OW7_A_D
1.27/q | 3B71_C_F
1.28/r | 3U3F_D_H
> split
Split FAT_DOMAIN (1).pdb (#1.1) into 2 models
Split FAT_DOMAIN (1).pdb (#1.2) into 2 models
Split FAT_DOMAIN (1).pdb (#1.3) into 2 models
Split FAT_DOMAIN (1).pdb (#1.4) into 2 models
Split FAT_DOMAIN (1).pdb (#1.5) into 2 models
Split FAT_DOMAIN (1).pdb (#1.6) into 2 models
Split FAT_DOMAIN (1).pdb (#1.7) into 2 models
Split FAT_DOMAIN (1).pdb (#1.8) into 2 models
Split FAT_DOMAIN (1).pdb (#1.9) into 2 models
Split FAT_DOMAIN (1).pdb (#1.10) into 2 models
Split FAT_DOMAIN (1).pdb (#1.11) into 2 models
Split FAT_DOMAIN (1).pdb (#1.12) into 2 models
Split FAT_DOMAIN (1).pdb (#1.13) into 2 models
Split FAT_DOMAIN (1).pdb (#1.14) into 2 models
Split FAT_DOMAIN (1).pdb (#1.15) into 2 models
Split FAT_DOMAIN (1).pdb (#1.16) into 2 models
Split FAT_DOMAIN (1).pdb (#1.17) into 2 models
Split FAT_DOMAIN (1).pdb (#1.18) into 2 models
Split FAT_DOMAIN (1).pdb (#1.19) into 2 models
Split FAT_DOMAIN (1).pdb (#1.20) into 2 models
Split FAT_DOMAIN (1).pdb (#1.21) into 2 models
Split FAT_DOMAIN (1).pdb (#1.22) into 2 models
Split FAT_DOMAIN (1).pdb (#1.23) into 2 models
Split FAT_DOMAIN (1).pdb (#1.24) into 2 models
Split FAT_DOMAIN (1).pdb (#1.25) into 2 models
Split FAT_DOMAIN (1).pdb (#1.26) into 2 models
Split FAT_DOMAIN (1).pdb (#1.27) into 2 models
Split FAT_DOMAIN (1).pdb (#1.28) into 2 models
Chain information for FAT_DOMAIN (1).pdb 0 #1.1.1
---
Chain | Description
0 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.1.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 1 #1.2.1
---
Chain | Description
1 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.2.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 2 #1.3.1
---
Chain | Description
2 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.3.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 3 #1.4.1
---
Chain | Description
3 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.4.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 4 #1.5.1
---
Chain | Description
4 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.5.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 5 #1.6.1
---
Chain | Description
5 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.6.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 6 #1.7.1
---
Chain | Description
6 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.7.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 7 #1.8.1
---
Chain | Description
7 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.8.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 8 #1.9.1
---
Chain | Description
8 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.9.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 9 #1.10.1
---
Chain | Description
9 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.10.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.11.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb a #1.11.2
---
Chain | Description
a | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.12.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb b #1.12.2
---
Chain | Description
b | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.13.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb c #1.13.2
---
Chain | Description
c | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.14.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb d #1.14.2
---
Chain | Description
d | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.15.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb e #1.15.2
---
Chain | Description
e | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.16.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb f #1.16.2
---
Chain | Description
f | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.17.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb g #1.17.2
---
Chain | Description
g | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.18.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb h #1.18.2
---
Chain | Description
h | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.19.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb i #1.19.2
---
Chain | Description
i | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.20.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb j #1.20.2
---
Chain | Description
j | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.21.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb k #1.21.2
---
Chain | Description
k | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.22.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb l #1.22.2
---
Chain | Description
l | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.23.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb m #1.23.2
---
Chain | Description
m | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.24.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb n #1.24.2
---
Chain | Description
n | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.25.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb o #1.25.2
---
Chain | Description
o | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.26.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb p #1.26.2
---
Chain | Description
p | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.27.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb q #1.27.2
---
Chain | Description
q | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.28.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb r #1.28.2
---
Chain | Description
r | No description available
> close session
> open "/Users/adminndavey/Downloads/FAT_DOMAIN (1).pdb"
23 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
5 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
6 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
8 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
19 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Chain information for FAT_DOMAIN (1).pdb
---
Chain | Description
1.1/0 | 1OW6_A_D
1.2/1 | 3RF3_A_C
1.3/2 | 1OW8_C_F
1.4/3 | 1OW8_A_D
1.5/4 | 3B71_B_E
1.6/5 | 3U3F_C_G
1.7/6 | 3S90_B_D
1.8/7 | 4XEK_A_C
1.9/8 | 1OW6_C_F
1.10/9 | 3TJ6_A_B
1.1/D 1.4/D 1.11/D 1.26/D | No description available
1.2/D | No description available
1.3/D | No description available
1.5/D 1.9/D 1.27/D | No description available
1.6/D 1.28/D | No description available
1.7/D | No description available
1.8/D | No description available
1.10/D | No description available
1.12/D | No description available
1.13/D | No description available
1.14/D | No description available
1.15/D | No description available
1.16/D | No description available
1.17/D | No description available
1.18/D | No description available
1.19/D 1.20/D | No description available
1.21/D | No description available
1.22/D | No description available
1.23/D | No description available
1.24/D | No description available
1.25/D | No description available
1.11/a | 3B71_A_D
1.12/b | 4XEF_D_F
1.13/c | 3U3F_A_I
1.14/d | 1XWJ_A_B
1.15/e | 4XEF_A_C
1.16/f | 3GM1_A_F
1.17/g | 3RF3_B_D
1.18/h | 4XEV_A_C
1.19/i | 5W93_A_D
1.20/j | 5W93_B_E
1.21/k | 3U3F_B_J
1.22/l | 4R32_A_C
1.23/m | 6PW8_A_B
1.24/n | 4XEV_D_F
1.25/o | 3GM1_B_D
1.26/p | 1OW7_A_D
1.27/q | 3B71_C_F
1.28/r | 3U3F_D_H
> hide #1.1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #1.1-9,11-17,19-23,25-28#!1#!1.10,18,24 target m
> show #!1.10 models
> hide #!1.10 models
> show #1.9 models
> hide #1.9 models
> show #1.9 models
> show #1.8 models
> show #1.7 models
> show #!1.10 models
> show #1.11 models
> show #1.13 models
> hide #1.13 models
> show #1.14 models
> show #1.16 models
> show #1.12 models
> show #1.13 models
> show #1.15 models
> color #1.7-9,11-16#!1.10 byhetero
> color #1.7-9,11-16#!1.10 bychain
> ui tool show "Show Sequence Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> hide #1.11 models
> select add #1.13
1049 atoms, 1052 bonds, 142 residues, 1 model selected
> hide #1.15 models
> show #1.15 models
> hide #1.15 models
> show #1.15 models
> hide #1.15 models
> show #1.15 models
> hide #1.15 models
> show #1.15 models
> select add #1.15
2165 atoms, 2167 bonds, 297 residues, 2 models selected
> hide #1.14 models
> show #1.14 models
> hide #1.14 models
> hide #1.16 models
> hide #1.7 models
> show #1.7 models
> hide #1.7 models
> hide #1.8 models
> show #1.8 models
> hide #1.8 models
> hide #1.9 models
> hide #!1.10 models
> show #!1.10 models
> hide #1.12 models
> rename #1.10 3TJ6
> rename #1.13 3U3F
> rename #1.15 4XEF
> select subtract #1.13
1116 atoms, 1115 bonds, 155 residues, 1 model selected
> select subtract #1.15
Nothing selected
> select add #1.10
2291 atoms, 2175 bonds, 1 pseudobond, 417 residues, 2 models selected
> select subtract #1.10
Nothing selected
> select add #1.10
2291 atoms, 2175 bonds, 1 pseudobond, 417 residues, 2 models selected
> select subtract #1.10
Nothing selected
> sequence chain #1.10/D
Alignment identifier is 1.10/D
> select #1.10/D:217-257
327 atoms, 329 bonds, 41 residues, 1 model selected
> select #1.10/D:135-257
977 atoms, 986 bonds, 123 residues, 1 model selected
> cartoon hide sel
> save "/Users/adminndavey/Desktop/Structures/FAT domain.cxs"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> close #1.11-12
> close #1.1-9
> close #1.14
> close #1.16-17,19-23,25-28#1.18,24
> save "/Users/adminndavey/Desktop/Structures/FAT domain.cxs"
> split
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8rc202405140121 (2024-05-14)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/adminndavey/Desktop/Structures/FAT domain.cxs"
Log from Fri Nov 22 18:14:17 2024UCSF ChimeraX version: 1.8rc202405140121
(2024-05-14)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/adminndavey/Downloads/FAT_DOMAIN (1).pdb"
23 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
5 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
6 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
8 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
19 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Chain information for FAT_DOMAIN (1).pdb
---
Chain | Description
1.1/0 | 1OW6_A_D
1.2/1 | 3RF3_A_C
1.3/2 | 1OW8_C_F
1.4/3 | 1OW8_A_D
1.5/4 | 3B71_B_E
1.6/5 | 3U3F_C_G
1.7/6 | 3S90_B_D
1.8/7 | 4XEK_A_C
1.9/8 | 1OW6_C_F
1.10/9 | 3TJ6_A_B
1.1/D 1.4/D 1.11/D 1.26/D | No description available
1.2/D | No description available
1.3/D | No description available
1.5/D 1.9/D 1.27/D | No description available
1.6/D 1.28/D | No description available
1.7/D | No description available
1.8/D | No description available
1.10/D | No description available
1.12/D | No description available
1.13/D | No description available
1.14/D | No description available
1.15/D | No description available
1.16/D | No description available
1.17/D | No description available
1.18/D | No description available
1.19/D 1.20/D | No description available
1.21/D | No description available
1.22/D | No description available
1.23/D | No description available
1.24/D | No description available
1.25/D | No description available
1.11/a | 3B71_A_D
1.12/b | 4XEF_D_F
1.13/c | 3U3F_A_I
1.14/d | 1XWJ_A_B
1.15/e | 4XEF_A_C
1.16/f | 3GM1_A_F
1.17/g | 3RF3_B_D
1.18/h | 4XEV_A_C
1.19/i | 5W93_A_D
1.20/j | 5W93_B_E
1.21/k | 3U3F_B_J
1.22/l | 4R32_A_C
1.23/m | 6PW8_A_B
1.24/n | 4XEV_D_F
1.25/o | 3GM1_B_D
1.26/p | 1OW7_A_D
1.27/q | 3B71_C_F
1.28/r | 3U3F_D_H
> split
Split FAT_DOMAIN (1).pdb (#1.1) into 2 models
Split FAT_DOMAIN (1).pdb (#1.2) into 2 models
Split FAT_DOMAIN (1).pdb (#1.3) into 2 models
Split FAT_DOMAIN (1).pdb (#1.4) into 2 models
Split FAT_DOMAIN (1).pdb (#1.5) into 2 models
Split FAT_DOMAIN (1).pdb (#1.6) into 2 models
Split FAT_DOMAIN (1).pdb (#1.7) into 2 models
Split FAT_DOMAIN (1).pdb (#1.8) into 2 models
Split FAT_DOMAIN (1).pdb (#1.9) into 2 models
Split FAT_DOMAIN (1).pdb (#1.10) into 2 models
Split FAT_DOMAIN (1).pdb (#1.11) into 2 models
Split FAT_DOMAIN (1).pdb (#1.12) into 2 models
Split FAT_DOMAIN (1).pdb (#1.13) into 2 models
Split FAT_DOMAIN (1).pdb (#1.14) into 2 models
Split FAT_DOMAIN (1).pdb (#1.15) into 2 models
Split FAT_DOMAIN (1).pdb (#1.16) into 2 models
Split FAT_DOMAIN (1).pdb (#1.17) into 2 models
Split FAT_DOMAIN (1).pdb (#1.18) into 2 models
Split FAT_DOMAIN (1).pdb (#1.19) into 2 models
Split FAT_DOMAIN (1).pdb (#1.20) into 2 models
Split FAT_DOMAIN (1).pdb (#1.21) into 2 models
Split FAT_DOMAIN (1).pdb (#1.22) into 2 models
Split FAT_DOMAIN (1).pdb (#1.23) into 2 models
Split FAT_DOMAIN (1).pdb (#1.24) into 2 models
Split FAT_DOMAIN (1).pdb (#1.25) into 2 models
Split FAT_DOMAIN (1).pdb (#1.26) into 2 models
Split FAT_DOMAIN (1).pdb (#1.27) into 2 models
Split FAT_DOMAIN (1).pdb (#1.28) into 2 models
Chain information for FAT_DOMAIN (1).pdb 0 #1.1.1
---
Chain | Description
0 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.1.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 1 #1.2.1
---
Chain | Description
1 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.2.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 2 #1.3.1
---
Chain | Description
2 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.3.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 3 #1.4.1
---
Chain | Description
3 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.4.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 4 #1.5.1
---
Chain | Description
4 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.5.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 5 #1.6.1
---
Chain | Description
5 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.6.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 6 #1.7.1
---
Chain | Description
6 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.7.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 7 #1.8.1
---
Chain | Description
7 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.8.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 8 #1.9.1
---
Chain | Description
8 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.9.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb 9 #1.10.1
---
Chain | Description
9 | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.10.2
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.11.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb a #1.11.2
---
Chain | Description
a | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.12.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb b #1.12.2
---
Chain | Description
b | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.13.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb c #1.13.2
---
Chain | Description
c | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.14.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb d #1.14.2
---
Chain | Description
d | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.15.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb e #1.15.2
---
Chain | Description
e | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.16.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb f #1.16.2
---
Chain | Description
f | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.17.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb g #1.17.2
---
Chain | Description
g | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.18.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb h #1.18.2
---
Chain | Description
h | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.19.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb i #1.19.2
---
Chain | Description
i | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.20.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb j #1.20.2
---
Chain | Description
j | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.21.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb k #1.21.2
---
Chain | Description
k | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.22.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb l #1.22.2
---
Chain | Description
l | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.23.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb m #1.23.2
---
Chain | Description
m | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.24.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb n #1.24.2
---
Chain | Description
n | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.25.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb o #1.25.2
---
Chain | Description
o | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.26.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb p #1.26.2
---
Chain | Description
p | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.27.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb q #1.27.2
---
Chain | Description
q | No description available
Chain information for FAT_DOMAIN (1).pdb D #1.28.1
---
Chain | Description
D | No description available
Chain information for FAT_DOMAIN (1).pdb r #1.28.2
---
Chain | Description
r | No description available
> close session
> open "/Users/adminndavey/Downloads/FAT_DOMAIN (1).pdb"
23 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
5 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
6 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
8 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
19 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Chain information for FAT_DOMAIN (1).pdb
---
Chain | Description
1.1/0 | 1OW6_A_D
1.2/1 | 3RF3_A_C
1.3/2 | 1OW8_C_F
1.4/3 | 1OW8_A_D
1.5/4 | 3B71_B_E
1.6/5 | 3U3F_C_G
1.7/6 | 3S90_B_D
1.8/7 | 4XEK_A_C
1.9/8 | 1OW6_C_F
1.10/9 | 3TJ6_A_B
1.1/D 1.4/D 1.11/D 1.26/D | No description available
1.2/D | No description available
1.3/D | No description available
1.5/D 1.9/D 1.27/D | No description available
1.6/D 1.28/D | No description available
1.7/D | No description available
1.8/D | No description available
1.10/D | No description available
1.12/D | No description available
1.13/D | No description available
1.14/D | No description available
1.15/D | No description available
1.16/D | No description available
1.17/D | No description available
1.18/D | No description available
1.19/D 1.20/D | No description available
1.21/D | No description available
1.22/D | No description available
1.23/D | No description available
1.24/D | No description available
1.25/D | No description available
1.11/a | 3B71_A_D
1.12/b | 4XEF_D_F
1.13/c | 3U3F_A_I
1.14/d | 1XWJ_A_B
1.15/e | 4XEF_A_C
1.16/f | 3GM1_A_F
1.17/g | 3RF3_B_D
1.18/h | 4XEV_A_C
1.19/i | 5W93_A_D
1.20/j | 5W93_B_E
1.21/k | 3U3F_B_J
1.22/l | 4R32_A_C
1.23/m | 6PW8_A_B
1.24/n | 4XEV_D_F
1.25/o | 3GM1_B_D
1.26/p | 1OW7_A_D
1.27/q | 3B71_C_F
1.28/r | 3U3F_D_H
> hide #1.1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #1.1-9,11-17,19-23,25-28#!1#!1.10,18,24 target m
> show #!1.10 models
> hide #!1.10 models
> show #1.9 models
> hide #1.9 models
> show #1.9 models
> show #1.8 models
> show #1.7 models
> show #!1.10 models
> show #1.11 models
> show #1.13 models
> hide #1.13 models
> show #1.14 models
> show #1.16 models
> show #1.12 models
> show #1.13 models
> show #1.15 models
> color #1.7-9,11-16#!1.10 byhetero
> color #1.7-9,11-16#!1.10 bychain
> ui tool show "Show Sequence Viewer"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> hide #1.11 models
> select add #1.13
1049 atoms, 1052 bonds, 142 residues, 1 model selected
> hide #1.15 models
> show #1.15 models
> hide #1.15 models
> show #1.15 models
> hide #1.15 models
> show #1.15 models
> hide #1.15 models
> show #1.15 models
> select add #1.15
2165 atoms, 2167 bonds, 297 residues, 2 models selected
> hide #1.14 models
> show #1.14 models
> hide #1.14 models
> hide #1.16 models
> hide #1.7 models
> show #1.7 models
> hide #1.7 models
> hide #1.8 models
> show #1.8 models
> hide #1.8 models
> hide #1.9 models
> hide #!1.10 models
> show #!1.10 models
> hide #1.12 models
> rename #1.10 3TJ6
> rename #1.13 3U3F
> rename #1.15 4XEF
> select subtract #1.13
1116 atoms, 1115 bonds, 155 residues, 1 model selected
> select subtract #1.15
Nothing selected
> select add #1.10
2291 atoms, 2175 bonds, 1 pseudobond, 417 residues, 2 models selected
> select subtract #1.10
Nothing selected
> select add #1.10
2291 atoms, 2175 bonds, 1 pseudobond, 417 residues, 2 models selected
> select subtract #1.10
Nothing selected
> sequence chain #1.10/D
Alignment identifier is 1.10/D
> select #1.10/D:217-257
327 atoms, 329 bonds, 41 residues, 1 model selected
> select #1.10/D:135-257
977 atoms, 986 bonds, 123 residues, 1 model selected
> cartoon hide sel
> save "/Users/adminndavey/Desktop/Structures/FAT domain.cxs"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> close #1.11-12
> close #1.1-9
> close #1.14
> close #1.16-17,19-23,25-28#1.18,24
> save "/Users/adminndavey/Desktop/Structures/FAT domain.cxs"
——— End of log from Fri Nov 22 18:14:17 2024 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,9
Model Number: Z17K001T0B/A
Chip: Apple M2 Pro
Total Number of Cores: 10 (6 performance and 4 efficiency)
Memory: 32 GB
System Firmware Version: 11881.1.1
OS Loader Version: 8422.141.2.700.1
Software:
System Software Overview:
System Version: macOS 13.7 (22H123)
Kernel Version: Darwin 22.6.0
Time since boot: 1 day, 5 hours, 25 minutes
Graphics/Displays:
Apple M2 Pro:
Chipset Model: Apple M2 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2418D:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57
ChimeraX-AtomicLibrary: 14.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.3
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.4
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8rc202405140121
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.1
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.16
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.4
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 1.3.4
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.51.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.2
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.10
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.1
prompt-toolkit: 3.0.43
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4
traitlets: 5.14.2
typing-extensions: 4.11.0
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.10
Change History (2)
comment:1 by , 11 months ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 11 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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