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Opened 12 months ago
Last modified 12 months ago
#16202 assigned defect
ArtiaX: "artiax tomo": slider: float division by zero
| Reported by: | Owned by: | Utz Ermel | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.4-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> artiax start
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
> open
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/amira_seg/029_trim.mrc
No such file/path:
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/amira_seg/029_trim.mrc
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels1.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.
Opened 029_trim_labels1.mrc as #1.1.1, grid size 551,551,361, pixel 4, shown
at level 5e-05, step 2, values uint8
> artiax clip off
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels2.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.
Opened 029_trim_labels2.mrc as #1.1.2, grid size 551,551,361, pixel 4, shown
at level 5e-05, step 2, values uint8
> artiax clip off
> artiax tomo #1.1.2 sliceDirection 0,0,1
> artiax view xy
> hide #!1.1.2 models
> show #!1.1.2 models
> hide #!1.1.1 models
> show #!1.1.1 models
> hide #!1.1.1 models
> show #!1.1.1 models
> hide #!1.1.2 models
> show #!1.1.2 models
> hide #!1.1.1 models
> hide #!1.1.2 models
> show #!1.1.2 models
> hide #!1.1.2 models
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.
Opened 029_trim_labels3.mrc as #1.1.3, grid size 551,551,361, pixel 4, shown
at level 5e-05, step 2, values uint8
> artiax clip off
> artiax tomo #1.1.3 sliceDirection 0,0,1
> artiax view xy
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels4.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.
Opened 029_trim_labels4.mrc as #1.1.4, grid size 551,551,361, pixel 4, shown
at level 5e-05, step 2, values uint8
> artiax clip off
> artiax tomo #1.1.4 sliceDirection 0,0,1
> artiax view xy
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.4 models
> show #!1.1.4 models
> hide #!1.1.4 models
> show #!1.1.4 models
> hide #!1.1.3 models
> hide #!1.1.4 models
> show #!1.1.4 models
> hide #!1.1.4 models
> show #!1.1.3 models
> volume #1.1.4 style surface
> volume #1.1.3 style surface
> volume #1.1.2 style surface
> volume #1.1.1 style surface
> artiax vol2geo
No drawing with a surface is currently selected
> ui mousemode right "mask connected triangles"
[Repeated 2 time(s)]
> ui mousemode right "delete tetra from boundary"
> ui mousemode right "mask connected triangles"
> undo
[Repeated 2 time(s)]
> show #!1.1.4 models
> show #!1.1.3 models
> close #1.1.3
> open
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc
Summary of feedback from opening
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc
---
note |
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.
Opened 029_trim_labels3.mrc as #2, grid size 551,551,361, pixel 4, shown at
level 5e-05, step 2, values uint8
> hide #!1.1.4 models
> show #!1.1.4 models
> hide #!1.1.4 models
> artiax add tomo #2
Opened 029_trim_labels3.mrc as #1.1.3, grid size 551,551,361, pixel 4, shown
at level 5e-05, step 2, values uint8
> artiax clip off
> artiax tomo #1.1.3 sliceDirection 0,0,1
> artiax view xy
> volume #1.1.3 style surface
> volume #1.1.3 style image colorMode auto8 imageMode "full region"
> volume #1.1.3 color #ff7a99 color white color white
> volume #1.1.3 level -0.5682,0 level 0,0 level 0.5546,1
> volume #1.1.3 step 1
> volume #1.1.3 level -0.5682,0 level 0,0 level 0.5665,0.9077
> volume #1.1.3 style mesh
> volume #1.1.3 style image
> volume #1.1.3 style surface
> smoothlines #1.1.3 iterations=50 factor=0.5
Expected a keyword
> smoothlines #1.1.3 iterations=50 factor=0.5
Expected a keyword
> smoothlines surface #1.1.3 iterations=50 factor=0.5
Missing or invalid "models" argument: invalid surfaces specifier
> hide #!1.1.4 models
Opened 029_trim.mrc as #1.1.5, grid size 551,551,361, pixel 4, shown at level
0.156, step 2, values float32
> artiax clip off
> artiax tomo #1.1.5 sliceDirection 0,0,1
> artiax view xy
> hide #!1.1.5 models
> artiax tomo #1.1.3 contrastWidth 0.64638819
> artiax tomo #1.1.3 contrastWidth 1.0
> smoothlines surface #1.1.3 iterations=50 factor=0.5
Missing or invalid "models" argument: invalid surfaces specifier
> smoothlines #1.1.3 iterations=50 factor=0.5
Expected a keyword
> smoothlines #1.1.3 stepFactor=0.5 iterations=50
Expected a keyword
> ui tool show "Surface Zone"
> set bgColor black
> set bgColor white
> set bgColor black
> lighting simple
[Repeated 2 time(s)]
> lighting soft
[Repeated 1 time(s)]
> lighting simple
> lighting full
[Repeated 1 time(s)]
> lighting simple
> show cartoons
> hide cartoons
> style ball
Changed 0 atom styles
> style sphere
Changed 0 atom styles
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lenka/Desktop/movie1.mp4
Movie saved to /Users/lenka/Desktop/movie1.mp4
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/lenka/Desktop/movie2.mp4
Movie saved to /Users/lenka/Desktop/movie2.mp4
> save /Users/lenka/Desktop/image1.png supersample 3
> set bgColor black
> set bgColor gray
> set bgColor black
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting shadows false
> graphics silhouettes false
> lighting shadows true
> lighting flat
> graphics silhouettes false
> view
[Repeated 1 time(s)]
> view orient
> lighting flat
> lighting shadows true intensity 0.5
> lighting full
> lighting soft
> lighting simple
> volume show
[Repeated 1 time(s)]
> volume hide
> volume show
[Repeated 1 time(s)]
> hide #!1.1.1 models
> hide #!1.1.2 models
> hide #!1.1.4 models
> hide #!1.1.5 models
> volume #!1.1.3 style mesh
[Repeated 1 time(s)]
> volume #!1.1.3 style surface
[Repeated 1 time(s)]
> volume #!1.1.3 style image
[Repeated 1 time(s)]
> volume #!1.1.3 style mesh
> volume #!1.1.3 style surface
Color zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
models, 1 maps.
[Repeated 1 time(s)]
> surface dust #1.1.3 size 40
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 0 atomic models, 1 maps.
> vop gaussian #1.1.3 sdev 12
Opened 029_trim_labels3.mrc gaussian as #2, grid size 551,551,361, pixel 4,
shown at step 1, values uint8
> volume #2 level -0.3365
> volume #2 level 0.7213
> volume #2 level -0.8535
> close #2
> smoothlines surface
Missing or invalid "models" argument: invalid surfaces specifier
> smoothlines surface #1.1.3
Missing or invalid "models" argument: invalid surfaces specifier
> artiax invert
> surface smooth #1.1.3
> surface #1.1.3
No atoms specified by #1.1.3
> surface smooth #1.1.3 factor=0.5 iteractions=5
Expected a keyword
> surface smooth #1.1.3 factor=0.5 iteractions5
Expected a keyword
> surface smooth #1.1.3 factor=0.5 iteractions 5
Expected a keyword
> surface smooth #1.1.3 factor=0.5
Expected a keyword
> surface smooth #1.1.3 factor=0.5
Expected a keyword
> surface smooth #1.1.3 factor 0.5
[Repeated 2 time(s)]
> hide #1.3 models
> hide #1.2 models
> hide #!1.1 models
> hide #!1 models
> hide #3 models
> hide #2 models
> hide #4 models
> hide #5 models
> show #2 models
> show #3 models
> show #4 models
> show #5 models
> close #2-5
> show #1.3 models
> show #1.2 models
> hide #1.2 models
> select add #1.3
1 model selected
> hide #1.3 models
> select add #1.1.3
4 models selected
> select subtract #1.3
3 models selected
> hide #!1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> surface smooth #1.1.3 factor 0.5
[Repeated 1 time(s)]
> hide #2 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> hide #3 models
> show #2 models
> show #3 models
> hide #2 models
> hide #3 models
> show #2 models
> show #3 models
> surface smooth #1.1.3 factor 0.5 iterations 5
> hide #3 models
> hide #2 models
> select add #4
4 models selected
> hide #!1.1.3 models
> select add #1.1.3
4 models selected
> select subtract #1.1.3
1 model selected
> select add #1.1.3
4 models selected
> select add #1.1.4
7 models selected
> select subtract #1.1.3
4 models selected
> select subtract #1.1.4
1 model selected
> surface smooth #1.1.3 factor 0.5 iterations 10
> hide #4 models
> select subtract #4
Nothing selected
> select add #5
1 model selected
> hide #5 models
> show #4 models
> show #5 models
> select subtract #5
Nothing selected
> hide #4 models
> hide #5 models
> show #5 models
> show #4 models
> hide #5 models
> hide #4 models
> surface smooth #1.1.3 factor 0.8 iterations 10
> surface smooth #1.1.3 factor 1 iterations 10
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> hide #6 models
> surface smooth #1.1.3 factor 1 iterations 20
> hide #7 models
> hide #8 models
> show #7 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> surface smooth #1.1.3 factor 5 iterations 20
> surface smooth #1.1.3 factor 2 iterations 20
[Repeated 1 time(s)]
> hide #11 models
> hide #10 models
> surface smooth #1.1.3 factor 1 iterations 20
[Repeated 1 time(s)]
> hide #13 models
> hide #12 models
> hide #9 models
> show #9 models
> hide #9 models
> show #13 models
> hide #13 models
> close #9-13
> close #2-6
> surface smooth #1.1.3 factor 1 iterations 20
> hide #2 models
> hide #7 models
> hide #8 models
> show #8 models
> show #7 models
> hide #8 models
> show #8 models
> hide #7 models
> hide #8 models
> show #8 models
> show #7 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> hide #7 models
> show #8 models
> show #7 models
> show #2 models
> hide #7 models
> hide #2 models
> close #2
> close #7
No map chosen to save
> select add #8
1 model selected
> hide #!1 models
> show #!1 models
> select add #1
20 models selected
> select subtract #1
1 model selected
> hide #!1 models
> show #!1.1.3 models
> hide #!1 target m
[Repeated 1 time(s)]
> show #!1 target m
[Repeated 1 time(s)]
> show #1.3 models
> show #1.2 models
> select add #1.2
2 models selected
> open
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc
> format mrc
Summary of feedback from opening
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc
---
note |
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.
Opened 029_trim_labels3.mrc as #2, grid size 551,551,361, pixel 4, shown at
level 5e-05, step 2, values uint8
> hide #!2 models
> show #!2 models
> hide #8 models
> show #8 models
> select subtract #8
1 model selected
> show #!1.1.4 models
> hide #!1.1.4 models
> show #!1.1.4 models
> hide #!1.1.4 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> surface smooth #2 factor 1 iterations 20
> hide #!2 models
> hide #3 models
> show #3 models
> surface smooth #2 factor 1 iterations 10
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #8 models
> show #8 models
> hide #8 models
> hide #3 models
> show #3 models
> hide #4 models
> hide #3 models
> hide #1.3 models
> hide #1.2 models
> select subtract #1.2
Nothing selected
> hide #!1.1.3 models
> hide #!1 models
> hide #!1.1 models
> show #8 models
> select add #8
1 model selected
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #8 models
> show #8 models
> select subtract #8
Nothing selected
> hide #!2 models
> show #4 models
> show #3 models
> hide #8 models
> close #8
> view #4 clip false
[Repeated 1 time(s)]
> show #4 target m
> lighting full
[Repeated 1 time(s)]
> lighting soft
> lighting simple
> hide #3 models
> hide #4 models
> show #3 models
> show #3 target m
[Repeated 2 time(s)]
> show #4 models
> show #1.3 models
> show #!2 models
> hide #3 models
> show #3 models
> hide #1.3 models
> show #1.3 models
> show #1.2 models
> hide #1.2 models
> hide #1.3 models
> show #!2 target m
[Repeated 1 time(s)]
> hide #!2 models
> show #3 target m
> hide #3 target m
> show #3 target m
> view #3 clip false
[Repeated 1 time(s)]
> lighting full
> lighting soft
> lighting simple
> set bgColor black
> set bgColor white
> set bgColor black
> close #3
> close #4
> hide #!1 models
> show #!2 models
> select add #2
2 models selected
> select subtract #2
Nothing selected
> surface smooth #2 factor 1 iterations 20
> hide #!2 models
> hide #3 models
> show #!2 models
> show #3 models
> hide #3 models
> show #3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> save
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3a.mrc
> models #2
> hide #2.1 models
> show #2.1 models
> hide #3 models
> hide #2.1 models
> show #2.1 models
> hide #!2 models
> hide #2.1 models
> show #2.1 models
> show #3 models
> hide #2.1 models
> open
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3a.mrc
Opened 029_trim_labels3a.mrc as #4, grid size 551,551,361, pixel 4, shown at
level 5e-05, step 2, values int16
> hide #!4 models
> hide #3 models
> hide #4.1 models
> show #4.1 models
> show #3 models
> hide #!4 models
> hide #4.1 models
> save
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/surface1.obj
> #3 format obj
[Repeated 1 time(s)]
> save
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/surface1.mrc
> #3 format mrc
Specified models are not volumes (#3)
> close #3
> show #!2 models
> show #!4 models
> hide #!2 models
> select add #4
2 models selected
> select subtract #4
Nothing selected
> hide #!4 models
> hide #2.1 models
> show #!2 models
> select add #2
2 models selected
> show #2.1 models
> select subtract #2
Nothing selected
> hide #!2 models
> hide #2.1 models
> show #2.1 models
> hide #!2 models
> hide #2.1 models
> show #!2 models
> show #2.1 models
> select add #2.1
1 model selected
> show #1.3 models
> hide #1.3 models
> show #!1.1 models
> show #!1.1.2 models
> hide #!1 models
> hide #!1.1 models
> hide #!1.1.2 models
> hide #!2 models
> hide #2.1 models
> select add #2
2 models selected
> select subtract #2.1
1 model selected
> select add #2.1
2 models selected
> select subtract #2
Nothing selected
> select add #2
2 models selected
> select subtract #2.1
1 model selected
> select subtract #2
Nothing selected
> show #!2 models
> hide #!2 models
> show #4.1 models
> show #2.1 models
> hide #!4 models
> hide #4.1 models
> open
> /Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/surface1.obj
Opened OBJ file surface1.obj containing 1 objects, 241668 triangles
> hide #!2 models
> hide #2.1 models
No map chosen to save
> show #2.1 models
> hide #3 models
> show #3 models
> hide #2.1 models
> hide #3 models
> show #3 models
> close #2-4
> show #!1.1.3 models
> select add #1.1.3
3 models selected
> show #!1.1.4 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.4 models
> hide #!1.1.3 models
> show #!1.1.3 models
> close #1.1.3
> show #!1.1.2 models
> show #!1.1.4 models
> show #!1.1.5 models
> hide #!1.1.4 models
> hide #!1.1.2 models
> show #!1.1.1 models
> hide #!1.1.1 models
/Users/lenka/Documents/POSTDOC_EMBL/PROJECTS/_COLLABORATION/Dolezal_MITO/membrainSEG_data/029_seg/029_trim_labels3.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.
Opened 029_trim_labels3.mrc as #1.1.3, grid size 551,551,361, pixel 4, shown
at level 5e-05, step 2, values uint8
> artiax clip off
> artiax tomo #1.1.3 sliceDirection 0,0,1
> artiax view xy
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.5 models
> volume #1.1.3 style surface
> surface smooth #1.1.5 factor 1 iterations 10
> hide #2 models
> show #2 models
> hide #2 models
> close #2
> select add #1.1.3
3 models selected
> select subtract #1.1.3
Nothing selected
> surface smooth #1.1.3 factor 1 iterations 10
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #2 models
> show #2 models
> hide #!1.1.3 models
> show #!1.1.5 models
> artiax invert
[Repeated 3 time(s)]
> ui tool show "Side View"
> view
[Repeated 1 time(s)]
> view orient
[Repeated 1 time(s)]
> view
[Repeated 1 time(s)]
> lighting shadows true
> lighting flat
[Repeated 1 time(s)]
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting shadows false
> lighting full
> lighting flat
[Repeated 1 time(s)]
> graphics silhouettes false
> graphics silhouettes true
> artiax view xy
[Repeated 1 time(s)]
> artiax view xz
> artiax view yz
> artiax view xy
> artiax clip toggle
Clipping thickness set to 300 A around slabs of #1.1.5.
> artiax clip toggle
Clipping thickness set to 300 A around slabs of #1.1.5.
> artiax clip toggle
Clipping thickness set to 300 A around slabs of #1.1.5.
> artiax tomo #1.1.3 slice 139
> artiax tomo #1.1.3 slice 163
> artiax tomo #1.1.5 slice 158
> artiax view yz
[Repeated 1 time(s)]
> artiax view xz
> artiax view xy
> artiax hide surfaces
[Repeated 1 time(s)]
> artiax show surfaces
> artiax view xy
[Repeated 1 time(s)]
> set bgColor black
[Repeated 1 time(s)]
> set bgColor white
> set bgColor black
> set bgColor white
> set bgColor black
> set bgColor white
> set bgColor black
> lighting simple
[Repeated 1 time(s)]
> lighting soft
> lighting full
> lighting soft
> lighting simple
> show cartoons
[Repeated 2 time(s)]
> hide cartoons
> show surfaces
> show cartoons
> lighting flat
> ui tool show "Side View"
[Repeated 1 time(s)]
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting flat
[Repeated 1 time(s)]
> lighting full
[Repeated 2 time(s)]
> lighting flat
> set bgColor black
[Repeated 1 time(s)]
> view
[Repeated 4 time(s)]
> view orient
> volume #!1.1.5 style surface
[Repeated 1 time(s)]
> volume #!1.1.5 style mesh
> volume #!1.1.5 style image
Hide dust shortcut requires a displayed map surface
> volume #!1.1.5 showOutlineBox true
> volume #!1.1.5 showOutlineBox false
> volume #!1.1.5 showOutlineBox true
> ui mousemode right "crop volume"
> ui mousemode right "move planes"
> ui mousemode right "crop volume"
> volume #1.1.5 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 722 tiltedSlabSpacing 4 tiltedSlabPlaneCount 10
> mousemode rightMode "rotate slab"
> volume #1.1.5 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 722 tiltedSlabSpacing 4 tiltedSlabPlaneCount 10
> mousemode rightMode "rotate slab"
> volume #!1.1.5 planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume #!1.1.5 planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> ui tool show "Side View"
> view orient
> view
[Repeated 1 time(s)]
> view orient
> hide #!1.1.5 models
> show #!1.1.5 models
> artiax tomo #1.1.5 pixelSize 4.0
> artiax view xy
clip back plane is in front of front plane
> artiax tomo #1.1.5 pixelSize 13.6
> artiax view xy
> artiax tomo #1.1.5 pixelSize 13.6
> artiax view xy
> artiax tomo #1.1.5 pixelSize 13.6
> artiax view xy
> artiax tomo #1.1.5 pixelSize 13.6
> artiax view xy
> artiax tomo #1.1.5 contrastCenter 1.87560165
> artiax tomo #1.1.5 contrastWidth 4.93227976
> hide #!1.1.5 models
> show #!1.1.5 models
> hide #!1.1.5 models
> show #!1.1.5 models
> show #!1.1.3 models
> artiax tomo #1.1.3 contrastCenter 0.47148289
> artiax tomo #1.1.3 contrastCenter 0.17870722
> artiax tomo #1.1.3 pixelSize 4.0
> artiax view xy
> artiax tomo #1.1.5 pixelSize 4.0
> artiax view xy
> artiax tomo #1.1.5 pixelSize 4.0
> artiax view xy
> artiax tomo #1.1.5 slice 1
[Repeated 1 time(s)]
> artiax tomo #1.1.5 slice 0
[Repeated 1 time(s)]
> select add #1.1.5
3 models selected
> select subtract #1.1.5
Nothing selected
> select add #1.1.5
3 models selected
> select add #2
4 models selected
> select subtract #2
3 models selected
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> close #1.1.5
Opened 029_trim.mrc as #1.1.5, grid size 551,551,361, pixel 4, shown at level
0.156, step 2, values float32
> artiax clip off
> artiax tomo #1.1.5 sliceDirection 0,0,1
> artiax view xy
> artiax tomo #1.1.5 slice 191
> hide #2 models
> artiax tomo #1.1.5 contrastCenter -0.51224806
Large Tomogram, might take time.
Opened Filtered 029_trim.mrc pixels, lp=200.0, hp=5.0 as #1.1.6, grid size
550,551,361, pixel 4, shown at level 0.617, step 1, values float32
> artiax clip off
> artiax filter #1.1.5 200.0 5.0 lpd None hpd None unit pixels lpCutoff
> gaussian hpCutoff gaussian threshold 0.001
> artiax tomo #1.1.6 slice 207
Large Tomogram, might take time.
Opened Averaged over 6 slabs with axis [0. 0. 1.] Filtered 029_trim.mrc
pixels, lp=200.0, hp=5.0 as #1.1.7, grid size 550,551,361, pixel 4, shown at
level 0.48, step 1, values float32
> artiax clip off
> artiax tomo #1.1.7 slice 200
No map chosen to save
> artiax tomo #1.1.7 slice 198
> artiax tomo #1.1.7 contrastCenter -0.197293
> artiax tomo #1.1.7 contrastWidth 2.49184526
> artiax tomo #1.1.7 contrastCenter -0.05353272
> artiax tomo #1.1.7 contrastCenter -0.197293
> artiax tomo #1.1.7 contrastWidth 2.25224485
> artiax tomo #1.1.7 slice 197
> artiax tomo #1.1.7 contrastWidth 2.50781862
> artiax tomo #1.1.7 contrastCenter 0.0263341
> artiax tomo #1.1.7 contrastCenter 0.05828083
> artiax tomo #1.1.7 slice 196
> artiax tomo #1.1.7 contrastCenter -0.53273365
> artiax tomo #1.1.7 contrastWidth 2.25224485
> artiax tomo #1.1.7 contrastCenter -0.03755936
> artiax tomo #1.1.7 contrastWidth 3.06688624
> artiax tomo #1.1.7 contrastCenter 0.17009438
> artiax tomo #1.1.7 contrastWidth 3.19467313
> artiax tomo #1.1.7 contrastWidth 2.85923256
> save /Users/lenka/Desktop/image2.png supersample 3
> save /Users/lenka/Desktop/image3.png supersample 3
> show #2 models
> hide #2 models
> show #2 models
> artiax tomo #1.1.7 slice 182
> artiax tomo #1.1.7 slice 192
> hide #!1.1.7 models
> volume zone #2 range 3
Missing required "near_atoms" argument
> surface zone #2 range 3
Expected a keyword
> surface zone nearAtoms #2 range 3
Missing or invalid "surfaces" argument: invalid surfaces specifier
> volume fill #2
Expected a density maps specifier or a keyword
> show #!1.1.7 models
> hide #!1.1.7 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.4 models
> hide #!1.1.4 models
> color bypolymer
> color bychain
> color byhetero
> show surfaces
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 0 atomic models, 0 maps.
Volume zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
models, 0 maps.
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> artiax tomo #1.1.3 slice 0
> hide #1.1.3.2 models
> show #1.1.3.2 models
> hide #1.1.3.2 models
> show #1.1.3.2 models
> hide #1.1.3.2 models
> show #1.1.3.2 models
> show #1.1.3.1 models
> hide #1.1.3.2 models
> show #1.1.3.2 models
> hide #1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.4 models
> hide #!1.1.4 models
> hide #1.1.3.2 models
> show #1.1.3.1 models
> hide #!1.1.3.1 models
> show #1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3.1 models
> show #1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3.1 models
> show #1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3.1 models
> show #1.1.3.1 models
> hide #1.1.3.1.1 models
> hide #!1.1.3.1 models
> hide #!1.1.3 models
> hide #2 models
> show #!1.1.3 models
> show #1.1.3.1 models
> hide #!1.1.3.1 models
> hide #!1.1.3 models
> show #1.1.3.1 models
> hide #!1.1.3 models
> show #1.1.3.2 models
> hide #1.1.3.2 models
> show #1.1.3.2 models
> hide #1.1.3.1.1 models
> hide #!1.1.3.1 models
> hide #!1.1.3 models
> show #1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3.1 models
> show #1.1.3.1 models
> hide #!1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> show #1.1.3.1 models
> surface smooth #1.1.3 factor 1 iterations 10
> hide #3 models
> hide #1.1.3.2 models
> hide #1.1.3.1.1 models
> hide #!1.1.3.1 models
> show #3 models
> show #1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #3 models
> show #3 models
> hide #4 models
> show #!1.1.7 models
> volume #!1.1.3,7 style surface
[Repeated 2 time(s)]
> volume #1.1.7 style image colorMode auto8 showOutlineBox true tiltedSlabAxis
> 0.3852,-0.3338,-0.8603 tiltedSlabOffset -707.7 tiltedSlabSpacing 4
> tiltedSlabPlaneCount 72
> volume #1.1.7 region 0,0,180,549,550,180 step 1 imageMode "full region"
> volume #!1.1.3,7 planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume #!1.1.3,7 planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume #1.1.3 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 722 tiltedSlabSpacing 4 tiltedSlabPlaneCount 10
> mousemode rightMode "rotate slab"
> volume #1.1.7 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 722 tiltedSlabSpacing 4 tiltedSlabPlaneCount 10
> mousemode rightMode "rotate slab"
> volume #!1.1.3,7 region all imageMode "full region"
> volume unzone #!1.1.3,7
> mousemode rightMode "crop volume"
> volume #1.1.3 orthoplanes xyz positionPlanes 275,275,180 style image region
> all
> mousemode rightMode "move planes"
> volume #1.1.7 orthoplanes xyz positionPlanes 275,275,180 style image region
> all
> mousemode rightMode "move planes"
> volume #1.1.3 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 722 tiltedSlabSpacing 4 tiltedSlabPlaneCount 10
> mousemode rightMode "rotate slab"
> volume #1.1.7 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 722 tiltedSlabSpacing 4 tiltedSlabPlaneCount 10
> mousemode rightMode "rotate slab"
> volume #!1.1.3,7 planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume #!1.1.3,7 planes z style image imageMode "full region"
> mousemode rightMode "move planes"
Volume zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
models, 2 maps.
> volume #!1.1.3,7 region all imageMode "full region"
> volume unzone #!1.1.3,7
> mousemode rightMode "crop volume"
> volume #!1.1.3,7 style image
> volume #!1.1.3,7 style surface
[Repeated 2 time(s)]
> volume #!1.1.3,7 style mesh
> volume #!1.1.3,7 style surface
> hide #!1.1.3 models
> hide #!1.1.7 models
> hide #1.1.3.1 models
> hide #3 models
> show #!1.1.5 models
> show #!1.1.6 models
> show #!1.1.7 models
> hide #!1.1.6 models
> select add #1.1.7
4 models selected
> select subtract #1.1.7
Nothing selected
> show #!1.1.6 models
> hide #!1.1.6 models
> show #!1.1.6 models
> hide #!1.1.5 models
> hide #!1.1.6 models
> show #!1.1.6 models
> show #!1.1.5 models
> close #1.1.7
Large Tomogram, might take time.
Opened Filtered Filtered 029_trim.mrc pixels, lp=200.0, hp=5.0 pixels,
lp=200.0, hp=5.0 as #1.1.7, grid size 550,551,361, pixel 4, shown at level
0.616, step 1, values float32
> artiax clip off
> artiax filter #1.1.6 200.0 5.0 lpd None hpd None unit pixels lpCutoff
> gaussian hpCutoff gaussian threshold 0.001
> artiax view xy
> artiax view xz
> artiax view xy
> ui mousemode right translate
[Repeated 1 time(s)]
> artiax invert
> ui mousemode right select
> artiax invert
> artiax view xy
> hide #!1.1.5 models
> select add #1.1.7
3 models selected
> select subtract #1.1.7
Nothing selected
> show #1.1.7.1 models
> hide #1.1.7.1 models
> show #1.1.7.1 models
> hide #1.1.7.1 models
> show #1.1.6.1 models
> hide #1.1.6.1 models
> show #1.1.6.1 models
> hide #1.1.6.1 models
> hide #!1.1.6 models
> show #!1.1.6 models
> hide #!1.1.6 models
> artiax tomo #1.1.5 slice 205
> artiax tomo #1.1.7 slice 198
> artiax tomo #1.1.7 contrastWidth 3.05404403
> artiax tomo #1.1.7 contrastCenter 0.16413038
> artiax tomo #1.1.7 contrastWidth 3.81755479
> artiax tomo #1.1.7 contrastCenter 0.1239456
> artiax tomo #1.1.7 slice 196
> show #4 models
> hide #4 models
> show #3 models
> show #2 models
> hide #3 models
> show #1.3 models
> hide #2 models
> hide #1.3 models
> show #!1.1.3 models
> select add #1.1.3
3 models selected
> select subtract #1.1.3
Nothing selected
> show #1.1.3.1 models
> hide #!1.1.3 models
> show #!1.1.3 models
> artiax view xy
> show #2 models
> show #3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> volume #!1.1.7 style surface
[Repeated 2 time(s)]
> hide #!1.1.7.1 models
> show #1.1.7.2 models
> vop falloff #1.1.3 factor 1 iterations 10
> volume falloff #1.1.3 factor 1 iterations 10
Expected a keyword
> set projection orthographic
Expected a keyword
> volume #1.1.7 region 0,0,0,549,550,360 step 2 colorMode auto8 imageMode
> "full region"
> volume #1.1.7 style surface
> volume #1.1.7 style mesh
> volume #1.1.7 style image
> volume #1.1.7 maximumIntensityProjection true
> volume #1.1.7 level -1.785,0 level 0.1239,0.5 level 1.422,0.9538
> volume #1.1.7 region 0,0,180,549,550,180 step 1 maximumIntensityProjection
> false showOutlineBox true
> volume #1.1.7 region 0,0,0,549,550,360 step 2
> volume #1.1.7 region 0,0,0,549,550,360 step 1 colorMode opaque8 orthoplanes
> xyz positionPlanes 274,275,180 imageMode orthoplanes
> volume #1.1.7 imageMode "box faces"
> volume #!1.1.7 region all imageMode "full region"
> volume unzone #!1.1.7
> mousemode rightMode "crop volume"
> volume #!1.1.7 region all imageMode "full region"
> volume unzone #!1.1.7
> mousemode rightMode "crop volume"
Volume zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
models, 1 maps.
> volume #!1.1.7 region all imageMode "full region"
> volume unzone #!1.1.7
> mousemode rightMode "crop volume"
> volume #1.1.7 orthoplanes xyz positionPlanes 275,275,180 style image region
> all
> mousemode rightMode "move planes"
> surface smooth solid #1.1.3 factor 1 iterations 10
Missing or invalid "surfaces" argument: invalid surfaces specifier
> surface smooth surface-spec (solid) #1.1.3 factor 1 iterations 10
Missing or invalid "surfaces" argument: invalid surfaces specifier
> surface smooth #1.1.3 solid factor 1 iterations 10
Expected a keyword
> surface smooth #2 solid factor 1 iterations 10
Expected a keyword
> smoothlines #2
Surface model surface smooth does not consist of lines
> surface smooth #2
> hide #5 models
> show #5 models
> hide #3 models
> hide #2 models
> hide #1.1.7.2 models
> hide #1.1.6.2 models
> hide #1.1.3.1 models
> hide #5 models
> show #5 models
> surface smooth #2 solid
Expected a keyword
> surface smooth #2 urface-soec solid
Expected a keyword
> surface smooth #2 surface-spec solid
Expected a keyword
> surface smooth #2 surface-spec solid
Expected a keyword
> surface smooth #2 surface-spec solid
Expected a keyword
> close #2-5
> volume gaussian #1.1.3 sDev 2
Opened 029_trim_labels3.mrc gaussian as #2, grid size 551,551,361, pixel 4,
shown at step 1, values uint8
> volume #2 level -0.6529
> select add #2
2 models selected
> select subtract #2
Nothing selected
> select add #2
2 models selected
> select add #2.1
2 models selected
> select subtract #2.1
1 model selected
> select add #2.1
2 models selected
> select subtract #2
Nothing selected
> select subtract #2.1
Nothing selected
> show #2.1 target m
[Repeated 1 time(s)]
> artiax show surfaces
[Repeated 1 time(s)]
> artiax show markers
> artiax view xy
> artiax view xz
> artiax view xy
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> show #1.1.3.1 models
> show #1.1.3.2 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #1.1.3.2 models
> hide #1.1.3.1 models
> show #1.1.3.1 models
> show #1.1.3.2 models
> hide #1.1.3.2 models
> show #1.1.3.2 models
> hide #2.1 models
> show #2.1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #1.1.3.2 models
> hide #1.1.3.1 models
> hide #!1.1.3 models
> volume #2
> volume #2 level -0.7245
> volume gaussian #1.1.3 sDev 1
Opened 029_trim_labels3.mrc gaussian as #3, grid size 551,551,361, pixel 4,
shown at step 1, values uint8
> close #2
> volume #3 step 2
> volume #3 step 1
> volume #3 level 0.9609
> volume #3 level 0.06122
> volume gaussian #1.1.3 sDev 1.5
Opened 029_trim_labels3.mrc gaussian as #2, grid size 551,551,361, pixel 4,
shown at step 1, values uint8
> volume #2 level -1
> close #2
> artiax view xy
> artiax view xz
> artiax view yz
> artiax view xz
> artiax view xy
> lighting flat
> lighting shadows true intensity 0.5
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting full
> lighting soft
[Repeated 2 time(s)]
> lighting simple
[Repeated 2 time(s)]
> lighting soft
> volume gaussian #1.1.3 sDev 1.1
Opened 029_trim_labels3.mrc gaussian as #2, grid size 551,551,361, pixel 4,
shown at step 1, values uint8
> volume #2 level 0
> volume #2 level 0.06294
> volume #2 level 0.003497
> volume #2 level 0.005245
> volume #3 level 0.5
> volume #3.1 level 0.5
No volumes specified
> volume #3 level 0.5
> volume #2 style image
> volume #2 level 0,0 level 0.1,0.8 level 1,1
> volume #2 level 0,0 level 0.1752,0.3692 level 1,1
> volume #2 level 0,0 level 0.2115,1 level 1,1
> volume #2 style surface
> lighting flat
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting flat
> lighting simple
[Repeated 1 time(s)]
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> graphics silhouettes true
> view
> lighting full
> lighting flat
> lighting full
> lighting flat
> lighting full
> show #!1.1.4 models
> hide #!1.1.4 models
> show #!1.1.4 models
> lighting full
> lighting simple
[Repeated 1 time(s)]
> lighting shadows true
> lighting shadows false
> lighting flat
[Repeated 2 time(s)]
> lighting full
> lighting flat
> lighting soft
> surface smooth #3 iterations 1
> hide #3.1 models
> hide #!2 models
> show #3.1 models
> hide #!3.1 models
> show #3.1 models
> hide #!3.1 models
> show #3.1 models
> hide #!3.1 models
> show #3.1 models
> hide #4 models
> show #4 models
> hide #!1.1.4 models
> hide #4 models
> show #4 models
> hide #4 models
> hide #3.1 models
> volume #1.1.5 region 0,0,180,550,550,180 step 1 colorMode auto8
> showOutlineBox true imageMode "full region"
> volume #1.1.5 region 0,0,0,550,550,360 step 2
> volume #1.1.5 style surface region 0,0,0,550,550,360 step 2
> volume #1.1.5 style mesh
> volume #1.1.5 style image
> volume #1.1.5 level -1.986,0 level -0.5932,0.6385 level 0.9616,1
> volume #1.1.5 region 0,0,0,550,550,360 step 1 colorMode opaque8 orthoplanes
> xyz positionPlanes 275,275,180 imageMode orthoplanes
> volume #1.1.5 imageMode "box faces"
> volume #1.1.5 region 0,0,0,550,550,360 step 2 colorMode auto8 imageMode
> "tilted slab" tiltedSlabAxis 0.2539,-0.03967,-0.9664 tiltedSlabOffset -532.1
> tiltedSlabSpacing 4 tiltedSlabPlaneCount 36
> volume #1.1.6 level 0.7
> volume #1.1.5 level -1.986,0 level -0.6292,0.6077 level 0.9616,1
> artiax tomo #1.1.5 slice 233
> artiax tomo #1.1.5 contrastWidth 2.7597284
> artiax tomo #1.1.5 contrastCenter -0.90369883
> artiax tomo #1.1.5 contrastCenter -0.15994236
> artiax tomo #1.1.5 contrastWidth 2.99459882
> artiax tomo #1.1.5 slice 241
> artiax view xy
> hide #!2 models
> artiax tomo #1.1.5 slice 218
> artiax tomo #1.1.5 slice 243
> volume #!1.1.5 showOutlineBox false
> artiax tomo #1.1.5 sliceDirection 0.25,-0.04,-0.97
> artiax tomo #1.1.5 slice 248
> show #!3 models
> hide #!3 models
> show #3.1 models
> hide #3.1 models
> show #4 models
> hide #4 models
> show #3.1 models
> hide #3.1 models
> show #!1.1.4 models
> hide #!1.1.4 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> artiax tomo #1.1.3 slice 137
> artiax tomo #1.1.3 slice 0
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> show #!1.1.3 models
> hide #!1.1.3 models
> volume #!3#!1.1.5 showOutlineBox false
> volume #!3#!1.1.5 showOutlineBox true
> volume #!3#!1.1.5 showOutlineBox false
> hide #!3 models
> show #4 models
> show #!2 models
> hide #4 models
> volume #!2#!1.1.5 style image
[Repeated 1 time(s)]
> volume #!2#!1.1.5 style mesh
[Repeated 1 time(s)]
> volume #!2#!1.1.5 style image
> volume #!2#!1.1.5 style surface
[Repeated 1 time(s)]
> volume #!2#!1.1.5 style mesh
> transparency #2.1#1.1.5.1 50
> hide #!1.1.5 models
> show #!1.1.5 models
> volume #1.1.5 style image region 0,0,180,550,550,180 step 1 colorMode auto8
> showOutlineBox true imageMode "full region"
> artiax tomo #1.1.5 sliceDirection 0.25,-0.04,-0.97
> artiax tomo #1.1.5 slice 32
> show #!1.1.7 models
> hide #!1.1.5 models
> volume #2 style surface
> volume #1.1.6
> volume #1.1.6 style image colorMode auto8 imageMode "full region"
> volume #1.1.6 region 0,0,180,549,550,180 step 1 showOutlineBox true
> volume #1.1.7 style image region 0,0,180,549,550,180 step 1 colorMode auto8
> imageMode "full region"
> volume #1.1.5 colorMode auto8 imageMode "full region"
> hide #!1.1.6 models
> hide #!1.1.7 models
> show #!1.1.6 models
> hide #!1.1.5 models
> show #!1.1.7 models
> hide #!1.1.6 models
> show #!1.1.6 models
> hide #!1.1.7 models
> volume #1.1.6 level -1.666,0 level -0.327,0.4231 level 1.686,1
> volume #1.1.6 step 2
> volume #1.1.6 step 4
> volume #1.1.6 step 1
> show #!1.1.6 models
> artiax tomo #1.1.6 slice 1
> artiax tomo #1.1.6 slice 0
> artiax tomo #1.1.6 slice 1
[Repeated 6 time(s)]
> artiax tomo #1.1.6 slice 0
> artiax tomo #1.1.6 sliceDirection 0.25,-0.04,-0.97
> artiax tomo #1.1.6 slice 44
> artiax tomo #1.1.6 slice 119
> artiax tomo #1.1.6 slice 91
> show #!1.1.5 models
> artiax tomo #1.1.6 slice 0
> hide #!1.1.5 models
> show #!1.1.5 models
> artiax tomo #1.1.6 slice 0
> artiax view xy
> show #!1.1.4 models
> hide #!1.1.4 models
> artiax tomo #1.1.6 slice 0
> artiax tomo #1.1.6 sliceDirection 0.25,-0.04,-0.97
> artiax tomo #1.1.6 sliceDirection 0.0,0.0,0.0
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?
[Repeated 3 time(s)]
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac14,2
Model Number: Z15S0023WD/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 24 GB
System Firmware Version: 10151.101.3
OS Loader Version: 10151.101.3
Software:
System Software Overview:
System Version: macOS 14.4 (23E214)
Kernel Version: Darwin 23.4.0
Time since boot: 13 days, 1 hour, 30 minutes
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL U2715H:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
DELL U2715H:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
annotated-types: 0.7.0
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.5.0
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
geomdl: 5.3.1
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
pandas: 2.2.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pyarrow: 15.0.2
pycollada: 0.7.2
pydantic: 2.9.2
pydantic-core: 2.23.4
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
starfile: 0.5.6
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (1)
comment:1 by , 12 months ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ArtiaX: "artiax tomo": slider: float division by zero |
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