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Opened 13 months ago
Closed 13 months ago
#16168 closed defect (can't reproduce)
Crash in event loop
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation
Thread 0x0000365c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:/Users/aliong/Downloads/3gjb.pdb
Chain information for 3gjb.pdb #1
---
Chain | Description
A | CYTC3
B | CYTC3
Non-standard residues in 3gjb.pdb #1
---
ACT — acetate ion
AKG — 2-oxoglutaric acid
FE2 — Fe (II) ion
SO4 — sulfate ion
> select /A:8-317
2068 atoms, 2124 bonds, 3 pseudobonds, 260 residues, 2 models selected
> select /B:8-319
2171 atoms, 2231 bonds, 2 pseudobonds, 271 residues, 2 models selected
> close session
> open C:/Users/aliong/Downloads/3gjb.cif.gz
File reader requires uncompressed file;
'C:/Users/aliong/Downloads/3gjb.cif.gz' is compressed
> open C:/Users/aliong/Downloads/3gjb.pdb1.gz
Summary of feedback from opening C:/Users/aliong/Downloads/3gjb.pdb1.gz
---
warnings | Start residue of secondary structure not found: HELIX 8 8 SER B 13
GLY B 24 1 12
Start residue of secondary structure not found: HELIX 9 9 GLU B 33 LEU B 49 1
17
Start residue of secondary structure not found: HELIX 10 10 GLY B 61 SER B 66
1 6
Start residue of secondary structure not found: HELIX 11 11 ASP B 69 ASP B 73
5 5
Start residue of secondary structure not found: HELIX 12 12 ILE B 74 MET B 82
1 9
16 messages similar to the above omitted
Cannot find LINK/SSBOND residue HIS (118 )
Cannot find LINK/SSBOND residue HIS (240 )
Cannot find LINK/SSBOND residue FE2 (320 )
Cannot find LINK/SSBOND residue FE2 (320 )
Cannot find LINK/SSBOND residue FE2 (320 )
1 messages similar to the above omitted
Chain information for 3gjb.pdb1.gz #1
---
Chain | Description
A | No description available
Non-standard residues in 3gjb.pdb1.gz #1
---
ACT — acetate ion
AKG — 2-oxoglutaric acid
FE2 — Fe (II) ion
SO4 — sulfate ion
> open "F:/Alphafold Halogenase/Halogenase
> domain_12454/fold_2024_09_20_15_42_model_1.cif"
Chain information for fold_2024_09_20_15_42_model_1.cif #2
---
Chain | Description
A | .
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2024_09_20_15_42_model_1.cif, chain A (#2) with 3gjb.pdb1.gz,
chain A (#1), sequence alignment score = 205.6
RMSD between 109 pruned atom pairs is 1.075 angstroms; (across all 177 pairs:
5.975)
> close session
> open C:/Users/aliong/Downloads/2fcu.pdb1.gz
Summary of feedback from opening C:/Users/aliong/Downloads/2fcu.pdb1.gz
---
warnings | Start residue of secondary structure not found: HELIX 11 11 THR B 8
GLY B 19 1 12
Start residue of secondary structure not found: HELIX 12 12 SER B 28 LEU B 43
1 16
Start residue of secondary structure not found: HELIX 13 13 ASN B 62 TYR B 66
5 5
Start residue of secondary structure not found: HELIX 14 14 ASP B 67 ASP B 71
5 5
Start residue of secondary structure not found: HELIX 15 15 ASP B 72 ILE B 79
1 8
18 messages similar to the above omitted
Chain information for 2fcu.pdb1.gz #1
---
Chain | Description
A | No description available
Non-standard residues in 2fcu.pdb1.gz #1
---
AKG — 2-oxoglutaric acid
DSU —
((2R,3S,4S,5S)-3,4-dihydroxy-5-(hydroxymethyl)-5-((2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methoxy-
tetrahydro-2H-pyran-2-yloxy)-tetrahydrofuran-2-yl)methyl nonanoate
> open "F:/Alphafold Halogenase/Halogenase
> domain_12454/fold_2024_09_20_15_42_model_1.cif"
Chain information for fold_2024_09_20_15_42_model_1.cif #2
---
Chain | Description
A | .
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2024_09_20_15_42_model_1.cif, chain A (#2) with 2fcu.pdb1.gz,
chain A (#1), sequence alignment score = 229
RMSD between 115 pruned atom pairs is 0.852 angstroms; (across all 214 pairs:
7.782)
> close session
> open
> C:/Users/aliong/Downloads/fold_2024_10_23_12_28_halo_12454/fold_2024_10_23_12_28_halo_12454_model_1.cif
Chain information for fold_2024_10_23_12_28_halo_12454_model_1.cif #1
---
Chain | Description
A | .
> open C:/Users/aliong/Downloads/2fcu.pdb1.gz
Summary of feedback from opening C:/Users/aliong/Downloads/2fcu.pdb1.gz
---
warnings | Start residue of secondary structure not found: HELIX 11 11 THR B 8
GLY B 19 1 12
Start residue of secondary structure not found: HELIX 12 12 SER B 28 LEU B 43
1 16
Start residue of secondary structure not found: HELIX 13 13 ASN B 62 TYR B 66
5 5
Start residue of secondary structure not found: HELIX 14 14 ASP B 67 ASP B 71
5 5
Start residue of secondary structure not found: HELIX 15 15 ASP B 72 ILE B 79
1 8
18 messages similar to the above omitted
Chain information for 2fcu.pdb1.gz #2
---
Chain | Description
A | No description available
Non-standard residues in 2fcu.pdb1.gz #2
---
AKG — 2-oxoglutaric acid
DSU —
((2R,3S,4S,5S)-3,4-dihydroxy-5-(hydroxymethyl)-5-((2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methoxy-
tetrahydro-2H-pyran-2-yloxy)-tetrahydrofuran-2-yl)methyl nonanoate
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 2fcu.pdb1.gz, chain A (#2) with
fold_2024_10_23_12_28_halo_12454_model_1.cif, chain A (#1), sequence alignment
score = 387.3
RMSD between 163 pruned atom pairs is 0.938 angstroms; (across all 279 pairs:
6.983)
> view
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
> sequence chain #1/A
Alignment identifier is 1/A
> open C:/Users/aliong/Downloads/3gjb.pdb1.gz
Summary of feedback from opening C:/Users/aliong/Downloads/3gjb.pdb1.gz
---
warnings | Start residue of secondary structure not found: HELIX 8 8 SER B 13
GLY B 24 1 12
Start residue of secondary structure not found: HELIX 9 9 GLU B 33 LEU B 49 1
17
Start residue of secondary structure not found: HELIX 10 10 GLY B 61 SER B 66
1 6
Start residue of secondary structure not found: HELIX 11 11 ASP B 69 ASP B 73
5 5
Start residue of secondary structure not found: HELIX 12 12 ILE B 74 MET B 82
1 9
16 messages similar to the above omitted
Cannot find LINK/SSBOND residue HIS (118 )
Cannot find LINK/SSBOND residue HIS (240 )
Cannot find LINK/SSBOND residue FE2 (320 )
Cannot find LINK/SSBOND residue FE2 (320 )
Cannot find LINK/SSBOND residue FE2 (320 )
1 messages similar to the above omitted
Chain information for 3gjb.pdb1.gz #3
---
Chain | Description
A | No description available
Non-standard residues in 3gjb.pdb1.gz #3
---
ACT — acetate ion
AKG — 2-oxoglutaric acid
FE2 — Fe (II) ion
SO4 — sulfate ion
> matchmaker #1 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3gjb.pdb1.gz, chain A (#3) with
fold_2024_10_23_12_28_halo_12454_model_1.cif, chain A (#1), sequence alignment
score = 398.2
RMSD between 157 pruned atom pairs is 1.040 angstroms; (across all 242 pairs:
5.447)
> matchmaker #3 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 2fcu.pdb1.gz, chain A (#2) with 3gjb.pdb1.gz, chain A (#3),
sequence alignment score = 785.2
RMSD between 197 pruned atom pairs is 0.839 angstroms; (across all 257 pairs:
3.178)
> matchmaker #1 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3gjb.pdb1.gz, chain A (#3) with
fold_2024_10_23_12_28_halo_12454_model_1.cif, chain A (#1), sequence alignment
score = 398.2
RMSD between 157 pruned atom pairs is 1.040 angstroms; (across all 242 pairs:
5.447)
> ui tool show "Show Sequence Viewer"
> sequence chain #3/A
Alignment identifier is 3/A
> close session
> open "F:/Alphafold
> Halogenase/HctB_Halogenase_domain/fold_2024_09_20_15_42_model_1.cif"
Chain information for fold_2024_09_20_15_42_model_1.cif #1
---
Chain | Description
A | .
> open "F:/Alphafold Halogenase/Halogenase
> domain_12454/fold_2024_09_20_15_42_model_1.cif"
Chain information for fold_2024_09_20_15_42_model_1.cif #2
---
Chain | Description
A | .
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2024_09_20_15_42_model_1.cif, chain A (#2) with
fold_2024_09_20_15_42_model_1.cif, chain A (#1), sequence alignment score =
951.7
RMSD between 220 pruned atom pairs is 0.702 angstroms; (across all 230 pairs:
1.040)
> close session
> open "F:/Alphafold Halogenase/Halogenase
> domain_12454/fold_2024_09_20_15_42_model_1_Hal_12454.cif"
Chain information for fold_2024_09_20_15_42_model_1_Hal_12454.cif #1
---
Chain | Description
A | .
> open "F:/Alphafold
> Halogenase/HctB_Halogenase_domain/fold_2024_09_20_15_42_model_1_HctB.cif"
Chain information for fold_2024_09_20_15_42_model_1_HctB.cif #2
---
Chain | Description
A | .
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2024_09_20_15_42_model_1_HctB.cif, chain A (#2) with
fold_2024_09_20_15_42_model_1_Hal_12454.cif, chain A (#1), sequence alignment
score = 951.7
RMSD between 220 pruned atom pairs is 0.702 angstroms; (across all 230 pairs:
1.040)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/A
Alignment identifier is 2/A
> select #2/A:120
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/A:120-129
82 atoms, 83 bonds, 10 residues, 1 model selected
> select #2/A:120
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/A:120-139
162 atoms, 165 bonds, 20 residues, 1 model selected
> close session
> open "F:/Alphafold Halogenase/3gjb.pdb1_CytC3.gz"
Unrecognized file suffix '.pdb1_CytC3'
> open "F:/Alphafold Halogenase/2fcu.pdb1_SyrB2.gz"
Unrecognized file suffix '.pdb1_SyrB2'
> open "F:/Alphafold Halogenase/3gjb.pdb1_CytC3.gz"
Unrecognized file suffix '.pdb1_CytC3'
> open C:/Users/aliong/Downloads/3gjb.pdb1.gz
Summary of feedback from opening C:/Users/aliong/Downloads/3gjb.pdb1.gz
---
warnings | Start residue of secondary structure not found: HELIX 8 8 SER B 13
GLY B 24 1 12
Start residue of secondary structure not found: HELIX 9 9 GLU B 33 LEU B 49 1
17
Start residue of secondary structure not found: HELIX 10 10 GLY B 61 SER B 66
1 6
Start residue of secondary structure not found: HELIX 11 11 ASP B 69 ASP B 73
5 5
Start residue of secondary structure not found: HELIX 12 12 ILE B 74 MET B 82
1 9
16 messages similar to the above omitted
Cannot find LINK/SSBOND residue HIS (118 )
Cannot find LINK/SSBOND residue HIS (240 )
Cannot find LINK/SSBOND residue FE2 (320 )
Cannot find LINK/SSBOND residue FE2 (320 )
Cannot find LINK/SSBOND residue FE2 (320 )
1 messages similar to the above omitted
Chain information for 3gjb.pdb1.gz #1
---
Chain | Description
A | No description available
Non-standard residues in 3gjb.pdb1.gz #1
---
ACT — acetate ion
AKG — 2-oxoglutaric acid
FE2 — Fe (II) ion
SO4 — sulfate ion
> open "F:/Alphafold Halogenase/Halogenase 12454_until
> ACBP/fold_2024_10_23_12_28_halo_12454/fold_2024_10_23_12_28_halo_12454_model_1.cif"
Chain information for fold_2024_10_23_12_28_halo_12454_model_1.cif #2
---
Chain | Description
A | .
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2024_10_23_12_28_halo_12454_model_1.cif, chain A (#2) with
3gjb.pdb1.gz, chain A (#1), sequence alignment score = 398.2
RMSD between 157 pruned atom pairs is 1.040 angstroms; (across all 242 pairs:
5.447)
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
> sequence chain #1/A
Alignment identifier is 1/A
> remove FE2
Unknown command: remove FE2
> select :ACT
12 atoms, 9 bonds, 3 residues, 1 model selected
> select :ACT
12 atoms, 9 bonds, 3 residues, 1 model selected
> hide sel atoms
> select :ACT
12 atoms, 9 bonds, 3 residues, 1 model selected
> select :AKG
20 atoms, 18 bonds, 2 residues, 1 model selected
> hide sel atoms
> select :FE2
1 atom, 1 residue, 1 model selected
> hide sel cartoons
> select :SO4
5 atoms, 4 bonds, 1 residue, 1 model selected
> hide sel atoms
> select :ACT
12 atoms, 9 bonds, 3 residues, 1 model selected
> select :AKG
20 atoms, 18 bonds, 2 residues, 1 model selected
> select :FE2
1 atom, 1 residue, 1 model selected
> select :SO4
5 atoms, 4 bonds, 1 residue, 1 model selected
> select :SO4
5 atoms, 4 bonds, 1 residue, 1 model selected
> select :FE2
1 atom, 1 residue, 1 model selected
> hide sel atoms
> undo
> close session
> open C:/Users/aliong/Downloads/2fcu-assembly1.cif.gz
File reader requires uncompressed file; 'C:/Users/aliong/Downloads/2fcu-
assembly1.cif.gz' is compressed
> open C:/Users/aliong/Downloads/2fcu-assembly1.cif.gz
File reader requires uncompressed file; 'C:/Users/aliong/Downloads/2fcu-
assembly1.cif.gz' is compressed
> open C:/Users/aliong/Downloads/2fcu.pdb1.gz
Summary of feedback from opening C:/Users/aliong/Downloads/2fcu.pdb1.gz
---
warnings | Start residue of secondary structure not found: HELIX 11 11 THR B 8
GLY B 19 1 12
Start residue of secondary structure not found: HELIX 12 12 SER B 28 LEU B 43
1 16
Start residue of secondary structure not found: HELIX 13 13 ASN B 62 TYR B 66
5 5
Start residue of secondary structure not found: HELIX 14 14 ASP B 67 ASP B 71
5 5
Start residue of secondary structure not found: HELIX 15 15 ASP B 72 ILE B 79
1 8
18 messages similar to the above omitted
Chain information for 2fcu.pdb1.gz #1
---
Chain | Description
A | No description available
Non-standard residues in 2fcu.pdb1.gz #1
---
AKG — 2-oxoglutaric acid
DSU —
((2R,3S,4S,5S)-3,4-dihydroxy-5-(hydroxymethyl)-5-((2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methoxy-
tetrahydro-2H-pyran-2-yloxy)-tetrahydrofuran-2-yl)methyl nonanoate
> open "F:/Alphafold Halogenase/Halogenase 12454_until
> ACBP/fold_2024_10_23_12_28_halo_12454/fold_2024_10_23_12_28_halo_12454_model_1.cif"
Chain information for fold_2024_10_23_12_28_halo_12454_model_1.cif #2
---
Chain | Description
A | .
> matchmaker #1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_2024_10_23_12_28_halo_12454_model_1.cif, chain A (#2) with
2fcu.pdb1.gz, chain A (#1), sequence alignment score = 387.3
RMSD between 163 pruned atom pairs is 0.938 angstroms; (across all 279 pairs:
6.983)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/A
Alignment identifier is 2/A
> select :AKG
10 atoms, 9 bonds, 1 residue, 1 model selected
> select :FE2
Nothing selected
> select :ACT
Nothing selected
> select :SO4
Nothing selected
> select :FE2
Nothing selected
> select :AKG
10 atoms, 9 bonds, 1 residue, 1 model selected
> remove ligand
Unknown command: remove ligand
> remove ligands
Unknown command: remove ligands
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> hide sel atoms
> select ::name="HOH"
252 atoms, 252 residues, 1 model selected
> hide sel atoms
> select ::name="DSU"
34 atoms, 35 bonds, 1 residue, 1 model selected
> hide sel atoms
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> hide sel atoms
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 Core Profile Context 22.20.27.09.230330
OpenGL renderer: AMD 15D8:C8
OpenGL vendor: ATI Technologies Inc.
Manufacturer: To Be Filled By O.E.M.
Model: To Be Filled By O.E.M.
OS: Microsoft Windows 10 Enterprise (Build 19045)
Memory: 14,957,674,496
MaxProcessMemory: 137,438,953,344
CPU: 8 AMD Ryzen 5 3400G with Radeon Vega Graphics
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 13 months ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 13 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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