![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 11 months ago
Closed 11 months ago
#16316 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.6-arm64-arm-64bit
ChimeraX Version: 1.9rc202411012347 (2024-11-01 23:47:45 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001fa6d8f40 (most recent call first):
File "/Applications/ChimeraX-1.9-rc2024.11.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9-rc2024.11.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9-rc2024.11.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 61)
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{
"uptime" : 250000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,12",
"coalitionID" : 4939,
"osVersion" : {
"train" : "macOS 14.6",
"build" : "23G80",
"releaseType" : "User"
},
"captureTime" : "2024-11-15 21:37:45.1705 +0800",
"codeSigningMonitor" : 1,
"incident" : "B1A222D2-3B73-466A-B2C7-311FA6015CCE",
"pid" : 44966,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-11-15 18:58:26.7456 +0800",
"procStartAbsTime" : 6033726388786,
"procExitAbsTime" : 6162778816864,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9-rc2024.11.01.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"1E280D4C-DA71-579A-B683-56713B4898CA","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "0DDD6F1D-F3C6-7CA8-05FE-CAEBFAAE94D6",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRd+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWzg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 1,
"sleepWakeUUID" : "6E06C578-E4FC-4B05-889F-C4BD3F24C522",
"sip" : "enabled",
"vmRegionInfo" : "0x7888d0b67bd8 is not in any region. Bytes after previous region: 26974822497241 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_NANO 600020000000-600040000000 [512.0M] rw-\/rwx SM=PRV \n---> \n UNUSED SPACE AT END",
"exception" : {"codes":"0x0000000000000001, 0x00007888d0b67bd8","rawCodes":[1,132529012505560],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00007888d0b67bd8"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":44966},
"vmregioninfo" : "0x7888d0b67bd8 is not in any region. Bytes after previous region: 26974822497241 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_NANO 600020000000-600040000000 [512.0M] rw-\/rwx SM=PRV \n---> \n UNUSED SPACE AT END",
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"faultingThread" : 0,
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"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2487.70.105"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6845423616,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 4857856,
"uuid" : "2b8cc0cb-bced-39d7-aaca-5035567e114d",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6751637504,
"size" : 294912,
"uuid" : "1a1ce00a-89cd-36ba-9678-5038aedd0d8d",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6753824768,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5083136,
"uuid" : "55720ee0-d8c3-33a1-9854-8e61a6f44895",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2602"
},
{
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"arch" : "arm64e",
"base" : 6929932288,
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"size" : 2899968,
"uuid" : "4166f6cb-b599-306c-8568-823bd29a74c3",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6749687808,
"size" : 562440,
"uuid" : "015e99c9-3c3f-3e28-ac31-9c9770316250",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
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"arch" : "arm64e",
"base" : 6771998720,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 12967936,
"uuid" : "c6949f67-60f6-3735-b583-bf1e069a8a0b",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "2602"
},
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"arch" : "arm64e",
"base" : 6749356032,
"size" : 331276,
"uuid" : "5c6386bd-f308-3370-bce9-63d1a89dab87",
"path" : "\/usr\/lib\/libobjc.A.dylib",
"name" : "libobjc.A.dylib"
},
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"arch" : "arm64e",
"base" : 6750273536,
"size" : 307200,
"uuid" : "987af6aa-ab54-39ce-84cf-c6d2d1dc9464",
"path" : "\/usr\/lib\/system\/libxpc.dylib",
"name" : "libxpc.dylib"
}
],
"sharedCache" : {
"base" : 6748930048,
"size" : 4214308864,
"uuid" : "2652ccc8-2581-3c2f-b259-753b7522cfa5"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.7G resident=0K(0%) swapped_out_or_unallocated=1.7G(100%)\nWritable regions: Total=3.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 608K 33 \nColorSync 656K 31 \nCoreAnimation 1072K 62 \nCoreGraphics 64K 4 \nCoreServices 624K 2 \nCoreUI image data 5072K 34 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 2.7G 103 \nMALLOC guard page 192K 12 \nMach message 64K 4 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.6M 36 \nStack 191.2M 36 \nVM_ALLOCATE 280.2M 199 \nVM_ALLOCATE (reserved) 96.0M 3 reserved VM address space (unallocated)\n__AUTH 4538K 635 \n__AUTH_CONST 43.7M 893 \n__CTF 824 1 \n__DATA 29.2M 1045 \n__DATA_CONST 55.3M 1058 \n__DATA_DIRTY 2949K 337 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 556.5M 179 \n__OBJC_RO 71.9M 1 \n__OBJC_RW 2200K 1 \n__TEXT 1.2G 1076 \ndyld private memory 592K 6 \nmapped file 629.0M 108 \nshared memory 3152K 24 \n=========== ======= ======= \nTOTAL 5.8G 5936 \nTOTAL, minus reserved VM space 5.7G 5936 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "04e7d5cda7f27f9d68046b191699b6b4058b710c",
"trialInfo" : {
"rollouts" : [
{
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"factorPackIds" : {
},
"deploymentId" : 240000013
},
{
"rolloutId" : "60da5e84ab0ca017dace9abf",
"factorPackIds" : {
},
"deploymentId" : 240000008
}
],
"experiments" : [
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
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]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9rc202411012347 (2024-11-01)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/jxs/Desktop/bingding pocket/binding pocket.cxs" format session
opened ChimeraX session
> hide #!2 models
> open /Users/jxs/Desktop/ratTAAR9-apo_Rf031.pdb
Chain information for ratTAAR9-apo_Rf031.pdb #5
---
Chain | Description
A | No description available
B | No description available
C | No description available
R | No description available
S | No description available
> show #!1,5 cartoons
> show #!1,5 atoms
> hide #!1,5 atoms
> hide #!5 models
> hide #!1 models
> show #!1 models
> undo
> hide #!5 models
> ui tool show "Side View"
> hide #!2 models
> hide #!1 models
> show #!5 models
> hide #!5 atoms
> show #!5 cartoons
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> open /Users/jxs/Desktop/ratTAAR9-AEP_Rf023.pdb
Chain information for ratTAAR9-AEP_Rf023.pdb #6
---
Chain | Description
A | No description available
B | No description available
C | No description available
R | No description available
> hide #!6 models
> show #!6 models
> hide #!5 models
> open /Users/jxs/Desktop/ratTAAR9-DMCHA_Rf018.pdb
Chain information for ratTAAR9-DMCHA_Rf018.pdb #7
---
Chain | Description
A | No description available
B | No description available
C | No description available
R | No description available
S | No description available
> hide #!6-7 atoms
> show #!6-7 cartoons
> hide #!6 models
> show #!1 models
> hide #!7 models
> show #!5 models
> select add #1
2326 atoms, 2397 bonds, 1 pseudobond, 290 residues, 2 models selected
> select subtract #1
1 model selected
> ui tool show Matchmaker
> matchmaker #!1 to #5
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker ratTAAR9-apo_Rf031.pdb, chain R (#5) with ratTAAR9-MPD_Rf025.pdb,
chain R (#1), sequence alignment score = 1462.2
RMSD between 258 pruned atom pairs is 0.953 angstroms; (across all 288 pairs:
1.452)
> ui tool show Matchmaker
> matchmaker #!6 to #5
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker ratTAAR9-apo_Rf031.pdb, chain B (#5) with ratTAAR9-AEP_Rf023.pdb,
chain B (#6), sequence alignment score = 1700.5
RMSD between 337 pruned atom pairs is 0.557 angstroms; (across all 338 pairs:
0.571)
> show #!6 models
> hide #!1 models
> ui tool show Matchmaker
> matchmaker #!7 to #5
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker ratTAAR9-apo_Rf031.pdb, chain B (#5) with ratTAAR9-DMCHA_Rf018.pdb,
chain B (#7), sequence alignment score = 1717.3
RMSD between 335 pruned atom pairs is 0.937 angstroms; (across all 338 pairs:
0.979)
> show #!1 models
> show #!7 models
> hide #!1 models
> hide #!5 models
> hide #!6 models
> show #!5 models
> hide #!7 models
> transparency 60 cartoons
> show #!6 models
> transparency 60 cartoons
> show #!7 models
> transparency 60 cartoons
> hide #!6 models
> hide #!7 models
> show #!1 models
> transparency 60 cartoons
> cartoon style width 12
> hide #!5 models
> cartoon style width 2
> cartoon style width 1
> cartoon style width 0.5
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> ui tool show "Show Sequence Viewer"
> sequence chain #1/R
Alignment identifier is 1/R
> select #1/R:290
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/R:290
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 7 atom styles
> color (#!1 & sel) byhetero
> select #1/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 7 atom styles
> select #1/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 12 atom styles
> color (#!1 & sel) byhetero
> select clear
> color sel byelement
> color sel byhetero
> select clear
> select #1/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #1/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> select clear
> select #1/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> color (#!1 & sel) byhetero
> select clear
> hide #!1 models
> show #!5 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> ui tool show "Show Sequence Viewer"
> sequence chain #5/R
Alignment identifier is 5/R
> hide #!5 models
> show #!6 models
> hide #!6 models
> show #!5 models
> show #!6 models
> hide #!6 models
> show #!7 models
> hide #!7 models
> hide #!5 models
> show #!2 models
> show #!1 models
> hide #!2 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!1 models
> hide #!6 models
> show #!5 models
> select #5/R:102
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #5/R:102-103
15 atoms, 14 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 15 atom styles
> color sel byhetero
> select #5/R:106
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #5/R:106-107
17 atoms, 17 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 17 atom styles
> color sel byhetero
> select #5/R:192
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #5/R:192
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 6 atom styles
> color sel byhetero
> select #5/R:264
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #5/R:264
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 12 atom styles
> color sel byhetero
> select #5/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #5/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 12 atom styles
> color sel byhetero
> select #5/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #5/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 7 atom styles
> color sel byhetero
> select #5/R:290
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #5/R:290-291
19 atoms, 19 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 19 atom styles
> color sel byhetero
> select clear
> hide #!5 models
> show #!6 models
> ui tool show "Show Sequence Viewer"
> sequence chain #6/R
Alignment identifier is 6/R
> select #6/R:102
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #6/R:102-103
15 atoms, 14 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 15 atom styles
> select #6/R:106
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #6/R:106-107
17 atoms, 17 bonds, 2 residues, 1 model selected
> show sel atoms
> select #6/R:264
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #6/R:264
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #6/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #6/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/R:290
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #6/R:290-291
19 atoms, 19 bonds, 2 residues, 1 model selected
> show sel atoms
> select #6/R:192
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #6/R:192
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> hide #!6 models
> show #!7 models
> ui tool show "Show Sequence Viewer"
> sequence chain #7/R
Alignment identifier is 7/R
> select #7/R:102
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #7/R:102-103
15 atoms, 14 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 15 atom styles
> color sel byhetero
> select #7/R:106
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #7/R:106-107
17 atoms, 17 bonds, 2 residues, 1 model selected
> style sel stick
Changed 17 atom styles
> show sel atoms
> color sel byhetero
> select #7/R:192
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #7/R:192
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 6 atom styles
> color sel byhetero
> select
> #7/R:24-49,56-74,76-84,92-125,130-133,136-159,186-222,235-271,280-303,306-316
1811 atoms, 1855 bonds, 225 residues, 1 model selected
> select clear
> select #7/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #7/R:287
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 7 atom styles
> color sel byhetero
> select #7/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #7/R:283
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 12 atom styles
> color sel byhetero
> select #7/R:290
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #7/R:290-291
19 atoms, 19 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 19 atom styles
> color sel byhetero
> select #7/R:264
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #7/R:264
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 12 atom styles
> color sel byhetero
> select #7/R:261
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #7/R:261
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 14 atom styles
> color sel byhetero
> hide #!7 models
> show #!6 models
> ui tool show "Show Sequence Viewer"
> sequence chain #6/R
Alignment identifier is 6/R
> select #6/R:261
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #6/R:261
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel atoms
> hide #!6 models
> show #!5 models
> ui tool show "Show Sequence Viewer"
> sequence chain #5/R
Alignment identifier is 5/R
> select #5/R:261
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #5/R:261
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 14 atom styles
> color sel byhetero
> hide #!5 models
> show #!1 models
> ui tool show "Show Sequence Viewer"
> sequence chain #1/R
Alignment identifier is 1/R
> select #1/R:307
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #1/R:307
14 atoms, 15 bonds, 1 residue, 1 model selected
> show sel cartoons
> show sel atoms
> style sel stick
Changed 14 atom styles
> color (#!1 & sel) byhetero
> hide #!1 models
> show #!5 models
> select ::name="8IA"
18 atoms, 18 bonds, 2 residues, 2 models selected
> show #!5 atoms
> hide #!5 atoms
> undo
> hide #!5 models
> show #!1 models
> hide #!1 models
> show #!6 models
> select ::name="PEA"
9 atoms, 9 bonds, 1 residue, 1 model selected
> show #6 target ab
> undo
> select ::name="LIG"
16 atoms, 16 bonds, 2 residues, 2 models selected
> style sel & #!6 stick
Changed 9 atom styles
> style sel & #!6 stick
Changed 9 atom styles
> style sel & #!6 stick
Changed 9 atom styles
> hide #!6 models
> show #!7 models
> select ::name="LIG"
16 atoms, 16 bonds, 2 residues, 2 models selected
> select ::name="LIG"
16 atoms, 16 bonds, 2 residues, 2 models selected
> show #7 target ab
> undo
> select add #7
9044 atoms, 9248 bonds, 1 pseudobond, 1145 residues, 4 models selected
> select subtract #7
16 atoms, 16 bonds, 2 residues, 2 models selected
> select add #7
9044 atoms, 9248 bonds, 1 pseudobond, 1145 residues, 4 models selected
> select subtract #7
16 atoms, 16 bonds, 2 residues, 2 models selected
> select add #7
9044 atoms, 9248 bonds, 1 pseudobond, 1145 residues, 4 models selected
> select subtract #7
16 atoms, 16 bonds, 2 residues, 2 models selected
> show #!6 models
> show #!5 models
> show #!1 models
> select add #5
9032 atoms, 9237 bonds, 1 pseudobond, 1144 residues, 4 models selected
> select subtract #5
16 atoms, 16 bonds, 2 residues, 2 models selected
> select add #6
7295 atoms, 7456 bonds, 1 pseudobond, 918 residues, 3 models selected
> select subtract #6
7 atoms, 7 bonds, 1 residue, 1 model selected
> hide #!1 models
> hide #!5 models
> hide #!6 models
> select ::name="LIG"
16 atoms, 16 bonds, 2 residues, 2 models selected
> show #!7 atoms
> hide #!7 atoms
> undo
> select ::name="8IA"
18 atoms, 18 bonds, 2 residues, 2 models selected
> show sel & #!7 atoms
> select add #3
2028 atoms, 2089 bonds, 2 pseudobonds, 264 residues, 3 models selected
> select subtract #3
9 atoms, 9 bonds, 1 residue, 2 models selected
> hide #!7 models
> show #!7 models
> show #!3 models
> hide #!3 models
> hide #!7 models
> show #!6 models
> select ::name="LIG"
16 atoms, 16 bonds, 2 residues, 2 models selected
> show sel & #!6 atoms
> select clear
> show #!5 models
> ui tool show "Side View"
> hide #!5 models
> hide #!6 models
> show #!5 models
> open /Users/jxs/Desktop/mpd/mpd-pdb.py
ChimeraX cannot open a regular Chimera session. An exporter from Chimera to
ChimeraX is available in the latest Chimera release. Use its File->Export
Scene
menu item, and change the resulting dialog's "File Type" to ChimeraX.
> open /Users/jxs/Desktop/ratTAAR9-MPD_Rf025.pdb
Chain information for ratTAAR9-MPD_Rf025.pdb #8
---
Chain | Description
A | No description available
B | No description available
C | No description available
R | No description available
S | No description available
> hide #!5,8 atoms
> show #!5,8 cartoons
> cartoon style width 0.5
> undo
> hide #!5 models
> hide #!8 atoms
> show #!8 cartoons
> cartoon style width 0.5
> select ::name="8IA"
18 atoms, 18 bonds, 2 residues, 2 models selected
> show #!8 atoms
> hide #!8 atoms
> show #!7 models
> hide #!7 models
> show #!6 models
> hide #!8 models
> show #!8 models
> hide #!6 models
> select ::name="HOH"
1 atom, 1 residue, 1 model selected
> show #!8 atoms
> undo
> select ::name="DRG"
7 atoms, 7 bonds, 1 residue, 1 model selected
> show #!8 atoms
> undo
> select ::name="Y01"
35 atoms, 38 bonds, 1 residue, 1 model selected
> show #!8 atoms
> undo
> select add #3
2019 atoms, 2080 bonds, 2 pseudobonds, 263 residues, 2 models selected
> select subtract #3
1 model selected
> show #!1 models
> hide #!1 models
> select ::name="LIG"
23 atoms, 23 bonds, 3 residues, 3 models selected
> show sel & #!8 atoms
> ui tool show "Show Sequence Viewer"
> sequence chain #1/R #8/R
Alignment identifier is 1
> select #1/R:102 #8/R:102
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/R:102-103 #8/R:102-103
30 atoms, 28 bonds, 4 residues, 2 models selected
1 [ID: 1] region 2 chains [84-85] RMSD: 5.175
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 15 atom styles
> color (#!8 & sel) byhetero
> select #1/R:106 #8/R:106
12 atoms, 10 bonds, 2 residues, 2 models selected
> select #1/R:106-107 #8/R:106-107
34 atoms, 34 bonds, 4 residues, 2 models selected
1 [ID: 1] region 2 chains [88-89] RMSD: 3.908
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 17 atom styles
> color (#!8 & sel) byhetero
> select #1/R:192 #8/R:192
12 atoms, 10 bonds, 2 residues, 2 models selected
> select #1/R:192 #8/R:192
12 atoms, 10 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [152] RMSD: 2.397
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 6 atom styles
> color (#!8 & sel) byhetero
> select #1/R:261 #8/R:261
28 atoms, 30 bonds, 2 residues, 2 models selected
> select #1/R:261 #8/R:261
28 atoms, 30 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [221] RMSD: 2.632
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 14 atom styles
> color (#!8 & sel) byhetero
> select #1/R:264 #8/R:264
24 atoms, 24 bonds, 2 residues, 2 models selected
> select #1/R:264 #8/R:264
24 atoms, 24 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [224] RMSD: 2.592
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 12 atom styles
> color (#!8 & sel) byhetero
> select #1/R:283 #8/R:283
24 atoms, 24 bonds, 2 residues, 2 models selected
> select #1/R:283 #8/R:283
24 atoms, 24 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [243] RMSD: 4.177
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 12 atom styles
> color (#!8 & sel) byhetero
> select #1/R:287 #8/R:287
14 atoms, 12 bonds, 2 residues, 2 models selected
> select #1/R:287 #8/R:287
14 atoms, 12 bonds, 2 residues, 2 models selected
1 [ID: 1] region 2 chains [247] RMSD: 4.661
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 7 atom styles
> color (#!8 & sel) byhetero
> select #1/R:290 #8/R:290
14 atoms, 12 bonds, 2 residues, 2 models selected
> select #1/R:290-291 #8/R:290-291
38 atoms, 38 bonds, 4 residues, 2 models selected
1 [ID: 1] region 2 chains [250-251] RMSD: 4.546
> show sel & #!8 atoms
> style sel & #!8 stick
Changed 19 atom styles
> color (#!8 & sel) byhetero
> select clear
> save "/Users/jxs/Desktop/binding pocket.cxs"
> open "/Users/jxs/Desktop/binding pocket.cxs"
opened ChimeraX session
> save "/Users/jxs/Desktop/binding pocket.cxs"
> open "/Users/jxs/Desktop/binding pocket.cxs"
opened ChimeraX session
> open "/Users/jxs/Desktop/binding pocket.cxs"
opened ChimeraX session
> select #5/A#6/A#7/A#8/A
7712 atoms, 7856 bonds, 932 residues, 4 models selected
> delete atoms (#!8 & sel)
> delete bonds (#!8 & sel)
> select #5/B#6/B#7/B#8/B
10400 atoms, 10588 bonds, 1352 residues, 4 models selected
> delete atoms (#!8 & sel)
> delete bonds (#!8 & sel)
> select #5/C#6/C#7/C#8/C
1700 atoms, 1724 bonds, 220 residues, 4 models selected
> delete atoms (#!8 & sel)
> delete bonds (#!8 & sel)
> select #5/S#7/S#8/S
5262 atoms, 5397 bonds, 684 residues, 3 models selected
> delete atoms (#!8 & sel)
> delete bonds (#!8 & sel)
> save "/Users/jxs/Desktop/binding pocket-2.cxs"
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9rc202411012347 (2024-11-01)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,12
Model Number: MXCR3CH/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 10151.140.19
OS Loader Version: 10151.140.19
Software:
System Software Overview:
System Version: macOS 14.6 (23G80)
Kernel Version: Darwin 23.6.0
Time since boot: 15天20小时53分钟
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.7.1
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.7
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.7
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9rc202411012347
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.5
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2
ChimeraX-Label: 1.1.11
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.2.4
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.7
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.54.1
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.12.1
html2text: 2024.2.26
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.1
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.1
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 11 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 11 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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The usual Mac Qt 6.7 crash in _NSViewHierarchyDidChangeBackingProperties. This is the 5th report in 10 days.