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Opened 12 months ago
Closed 12 months ago
#16214 closed defect (fixed)
ui view fourup: ZeroDivisionError
| Reported by: | Owned by: | Zach Pearson | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | DICOM | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.15.0-86-generic-x86_64-with-glibc2.31
ChimeraX Version: 1.8rc202406060152 (2024-06-06 01:52:35 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8rc202406060152 (2024-06-06)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open emd_40220.map
Opened emd_40220.map as #1, grid size 568,652,953, pixel 1.36,1.36,1.36, shown
at step 1, values float32
> volume #1 level 0,0 level 0.02662,0.8 level 0.07601,1
> volume #1 region 0,0,0,567,651,952 step 4
[Repeated 1 time(s)]
> volume #1 level 0.01105
> volume #1 level 0.0001758
> volume #1 level 0.01705
> open 8GLV fromDatabase pdb format mmcif
Summary of feedback from opening 8GLV fetched from pdb
---
note | Fetching compressed mmCIF 8glv from http://files.rcsb.org/download/8glv.cif
8glv title:
96-nm repeat unit of doublet microtubules from Chlamydomonas reinhardtii
flagella [more info...]
Chain information for 8glv #2
---
Chain | Description | UniProt
0A 0C 0E 0G 0I 0K 0M 0O 0Q 0S 0U 0W 0Y 1A 1C 1E 1G 1K 1M 1O 1Q 1S 1U 1W 2A 2C 2E 2G 2I 2K 2M 2Q 2S 2U 2W 2Y 3A 3C 3G 3I 3K 3M 3O 3Q 3S 8H 8J 8L 8N A1 A3 A5 A6 A7 A9 AJ Ah Aj Al An Ap Au Aw Ay B1 B3 B5 B6 B8 BB BG BI BK BM BO BS BU BW BY Ba Bf Bh Bj Bl Bn Bs Bu Bw By C0 C2 C4 C6 C8 CE CG CI CK CM CR CT CV CX CZ Ce Cg Ci Ck Cm Cr Ct Cv Cx Cz D0 D2 D4 D6 D8 DE DG DI DK DM DR DT DV DX DZ De Dg Di Dk Dm Dr Dt Dv Dx Dz E0 E2 E4 E6 E8 ED EF EH EJ EL EQ ES EU EW EY Ed Ef Eh Ej El Eq Es Eu Ew F0 F2 F6 F8 FC FE FG FI FK FP FR FT FV FX Fc Fe Fg Fi Fk Fp Fr Ft Fv Fx G0 G2 G4 G6 G8 GB GD GF GH GJ H2 H4 H6 H8 I0 I2 I4 I8 IK IM IW IY Ij Il Iw Iy J0 J2 J4 J6 J8 JJ JL JU JW JY Jh Jj Jl Ju Jw Jy K0 K4 K6 K8 KH KJ KL KU KW KY Kh Kj Kl Kv Kx L0 L2 L4 L6 LH LJ LT LV LX Lh Lj Lu Lw M0 M2 M4 M6 M8 MG MI MT MV Mg Mi Mt Mv N0 N2 N6 N8 NF NH NJ NS NU NW Nf Nh Nj O0 O2 O4 O6 O8 P4 P6 P8 Q0 Q2 Q4 Q6 Q8 R0 R2 R4 R6 R8 S0 S2 S4 S6 S8 T0 T2 T4 T6 T8 U2 U4 U6 U8 V0 V2 V4 V6 V8 W0 W2 W4 W6 W8 X0 X2 X4 X6 X8 Y0 Y2 Y4 Y6 Y8 Z0 Z2 Z4 Z6 Z8 | Tubulin beta | TBB_CHLRE 1-443
0B 0F 0H 0J 0L 0N 0P 0R 0V 0X 0Z 1B 1D 1F 1H 1L 1N 1P 1R 1T 1V 1X 1Z 2B 2D 2F 2H 2J 2L 2N 2P 2R 2T 2V 2X 2Z 3B 3D 3F 3H 3J 3L 3N 3P 3R 3T 8F 8I 8K 8M A0 A2 A4 A8 AT Ag Ai Ak Am Ao At Av Ax Az B0 B2 B4 B7 B9 BA BF BH BJ BL BN BT BV BX BZ Bb Bg Bi Bk Bm Bo Bt Bv Bx Bz C1 C3 C5 C7 C9 CA CF CH CJ CL CN CS CU CW CY Cf Ch Cj Cl Cs Cu Cw Cy D1 D3 D5 D7 DD DF DH DJ DL DN DQ DS DU DW DY Da Dd Df Dh Dj Dl Dq Ds Du Dw Dy E1 E3 E5 E7 E9 EC EE EG EI EK EP ER ET EV EX Ec Ee Eg Ei Ek Ep Er Et Ev Ex F1 F3 F5 F7 F9 FD FF FH FJ FL FQ FS FU FW FY Fd Ff Fh Fj Fl Fq Fs Fu Fw G1 G3 G5 G7 G9 GC GE GG GI H1 H3 H5 H7 H9 Hu I1 I3 I5 I7 I9 IL IV IX IZ Ii Ik Im Iv Ix Iz J1 J3 J5 J7 J9 JI JK JV JX Ji Jk Jv Jx K1 K3 K5 K7 K9 KI KK KV KX Ki Kk Kw Ky L1 L3 L5 L7 L9 LI LK LU LW Li Lk Lv Lx M1 M3 M5 M7 M9 MF MH MJ MS MU MW Mf Mh Mj Ms Mu Mw N1 N3 N5 N7 N9 NG NI NT NV Ng Ni O1 O3 O5 O7 O9 P3 P5 P7 P9 Q1 Q3 Q5 Q9 R1 R3 R5 R7 R9 S1 S5 S7 S9 T1 T3 T5 T7 U1 U3 U5 U7 U9 V1 V3 V7 V9 W1 W3 W5 W7 W9 X3 X5 X7 X9 Y1 Y3 Y5 Y9 Z1 Z3 Z5 Z7 Z9 | Tubulin alpha | TBA1_CHLRE 1-451
3V 3X 3Z 4B 4D 4F 4H 4J GP GR GT GV GX Nt Nv | PACRG | B1B601_CHLRE 1-307
3W 3Y 4A 4C 4E 4G 4I GO GQ GS GU GW Ns Nu Nw | Cilia- and flagella-associated protein 20 | CFA20_CHLRE 1-190
4O 5D Gd OA | Meiosis-specific nuclear structural protein 1 | A0A2K3CRG7_CHLRE 1-504
4Q 4W Nz | Flagellar associated protein | A8J0X0_CHLRE 1-475
4R Ga Gf Gi Gj OG | Coiled-coil protein associated with protofilament ribbons | Q9M6B0_CHLRE 1-367
4X 5C Go Gp Gq OD OO | Cilia- and flagella-associated protein 45 | CFA45_CHLRE 1-501
5E Gr OQ | FAP34 | A0A2K3E5X9_CHLRE 1-274
5F 7B Gs | Flagellar associated protein | A8IY81_CHLRE 1-390
5H 5I 5J 5K Gv Gw Gx OV | Protein Flattop homolog | FLTOP_CHLRE 1-137
5L 5M 5N Ad Ae Af Eo HG | FAP52 | A0A2K3D260_CHLRE 1-633
5O 5P Gy Gz OY | Nucleoside diphosphate kinase | A8JGW5_CHLRE 1-380
5Q HA OZ | Flagellar associated protein | A8J250_CHLRE 1-197
5S 5T 5U 5V HD HE Oc Od | Flagellar associated protein | A8J098_CHLRE 1-240
5X 5Y 5Z 6A 6B 6C 6D HH HI HJ HK HL Oi Oj Ok | Flagellar associated protein | A8JDK1_CHLRE 1-230
6E HN Om | FAP143 | A0A2K3E1X6_CHLRE 1-268
6F HO On zp zq | Flagellar associated protein | A8HRH3_CHLRE 1-403
6G 6H HP HQ Op | FAP166 | A0A2K3DZF0_CHLRE 7-220
6I 6J 6K 6L 6M 6N 6O 6P HS HT HU HV HW Ot Ou Ov | Flagellar associated protein | A8I1S7_CHLRE 1-352
6Q 6R 6S HY HZ Ha Oy Oz | FAP339 | A0A2K3DTN6_CHLRE 1-87
6T 6U 6V 6W 6X 6Y 6Z Hb Hc Hd He Hf Hg PD PE PF | Protofilament ribbon protein of flagellar microtubules | Q8LKK4_CHLRE 1-635
7C Hj | Flagellar associated protein | A0A835TDA6_9CHLO 1-111
7D 7E Hk Hl PK | Flagellar associated protein | A8JF23_CHLRE 1-146
7G Hn | Flagellar associated protein | A8HSW0_CHLRE 1-235
7H 7X | Flagellar associated protein | A8JHR6_CHLRE 7-477
7I 7J Hp | FAP129 | A0A2K3DZI2_CHLRE 1-483
7K Hq Hr PQ | FAP21 | A0A2K3CNK8_CHLRE 17-458
7M 7N Ht | Flagellar associated protein | A8IXN7_CHLRE 1-139
7P Hv PV | Flagellar associated protein | A8JC52_CHLRE 1-238
7Q Hw PW zn zo | FAP306 | A0A2K3D7C7_CHLRE 1-189
7Y ID Pe | Flagellar associated protein | A8HPK6_CHLRE 1-312
8B 8C IG IH Pi | Flagellar associated protein | A8ICC1_CHLRE 1-242
AA Cb Gg Ll | Dynein axonemal light chain 1 | DNAL1_CHLRE 1-198
AB AY Fb MM MR MY Ma | Outer dynein arm-docking complex subunit 1 | A8IPZ5_CHLRE 1-749
AC AZ Fn LN MO | Outer dynein arm-docking complex protein DC3 | Q7Y0H2_CHLRE 1-184
AD AX Fa Ks Lo | Dynein gamma chain, flagellar outer arm | DYHG_CHLRE 1-4485
AE | IC97/Casc1 N-terminal domain-containing protein | A0A2K3CYR5_CHLRE 1-760
AF | Axonemal inner arm I1 intermediate chain dynein IC138 | Q5XPS1_CHLRE 1-1057
AG | IC140 | A8J3B6_CHLRE 1-1024
AH | Axonemal inner arm dynein I1/f subunit | A8I2N3_CHLRE 1-294
AI Bc Bd GY LC MA | Dynein light chain roadblock LC7b | A8IY95_CHLRE 1-100
AK BQ BR GN L8 LB | Dynein light chain roadblock LC7a | Q9SWQ6_CHLRE 1-105
AL AM AN AO AP AQ Be Bp Bq Br CB CC CD CO FA FB GZ Ge I6 Io Ip Iq Ir Is It Iu KM KN KO KP KQ KR KS KT Kc Kd Ke Kf LD LE LF LG MB MC MD ME | Dynein 8 kDa light chain, flagellar outer arm | DYL1_CHLRE 1-91
AR | Dynein light chain Tctex1 | O64980_CHLRE 1-114
AS | Inner arm dynein light chain | Q6IET4_CHLRE 1-120
AU Ca FN LM ML | Dynein light chain 10 | A8J5C4_CHLRE 1-103
AV | Cilia- and flagella-associated protein 73 | CFA73_CHLRE 1-308
AW | Cilia- and flagella-associated protein 100 | CP100_CHLRE 1-576
Aa Ab Fo Kt Lp | Dynein, 78 kDa intermediate chain, flagellar outer arm | DYI2_CHLRE 1-683
Ac Aq Fz Ku Lq | WD_REPEATS_REGION domain-containing protein | A8IJZ3_CHLRE 1-567
Ar As GA Kz Lr | Flagellar outer dynein arm light chain 2 | O04355_CHLRE 1-136
BC BD GL K2 Lt | Dynein 18 kDa light chain, flagellar outer arm | DYL3_CHLRE 1-159
BE BP GM LA Lz | Dynein 11 kDa light chain, flagellar outer arm | DYL2_CHLRE 1-120
CP CQ FM LL MK | Dynein light chain 9 | Q2VIY5_CHLRE 1-117
Cc Cd Gk MN MX MZ Mb | Outer dynein arm protein 1 | ODA1_CHLRE 1-552
Cn | AAA+ ATPase domain-containing protein | A0A2K3D1N8_CHLRE 1-4625
Co | Dynein-1-beta heavy chain, flagellar inner arm I1 complex | DYH1B_CHLRE 1-4513
Cp Cq | WD_REPEATS_REGION domain-containing protein | A0A2K3DTF4_CHLRE 1-1316
D9 | Inner-arm dynein f/I1 light chain | A0A2K3E783_CHLRE 1-238
DA DP Gl Lm | Heavy chain alpha | A0A2K3DV97_CHLRE 1-4503
DB Db Gt Kr Ln | Flagellar outer dynein arm heavy chain beta | A8J1M5_CHLRE 1-4568
DC Dc HB Ly | Dynein 14 kDa light chain, flagellar outer arm | DYL4_CHLRE 1-129
DO Dn Gu Ls | Dynein 16 kDa light chain, flagellar outer arm | DYL5_CHLRE 1-156
Do MP | FAP44 | A0A2K3DCF8_CHLRE -390-2141 1-2141
Dp MQ | FAP43 | A0A2K3CWA0_CHLRE 1-1950
EA | Dynein regulatory complex protein 1 | DRC1_CHLRE 1-698
EB | Dynein regulatory complex subunit 2 | DRC2_CHLRE 1-573
EM | Dynein regulatory complex subunit 6 | DRC6_CHLRE 1-260
EN EO | Dynein regulatory complex subunit 4 | DRC4_CHLRE 1-471
EZ HF HM | Dynein regulatory complex protein 8 | DRC8_CHLRE 1-166
Ea | ATPase AAA-type core domain-containing protein | A0A2K3DJI6_CHLRE 1-836
Eb | Flagellar associated protein | A0A2K3CXC4_CHLRE 1-1598
Em | Dynein regulatory complex subunit 3 | DRC3_CHLRE 1-524
En | Dynein regulatory complex protein 9 | A0A2K3E6B1_CHLRE 1-406
Ey | Dynein regulatory complex protein 10 | DRC10_CHLRE 1-356
Ez | DRC5 | A0A2K3E7N9_CHLRE 1-390
F4 | DUF4201 domain-containing protein | A0A2K3CQ22_CHLRE 1-409
FO JC | Calmodulin | A8IDP6_CHLRE 1-163
FZ Md Ml | Caltractin | CATR_CHLRE 1-169
Fm | AAA+ ATPase domain-containing protein | A0A2K3CYE9_CHLRE 1-4191
Fy | DUF4201 domain-containing protein | A0A2K3DWC0_CHLRE 1-490
GK | Cilia- and flagella-associated protein 299 | A0A2K3D8T3_CHLRE 1-237
Gb Ny OL ON | Cilia- and flagella-associated protein 53 | CFA53_CHLRE 1-482
Gc Gm Gn | FAP210 | A0A2K3E0E3_CHLRE -5-456
Gh JD Km Ld Mc Mk | Actin | ACT_CHLRE 1-377
H0 Hz JT JZ | Flagellar radial spoke protein 5 | RSP5_CHLRE 1-521
HX Hh JH JM | Flagellar radial spoke protein 1 | RSP1_CHLRE 1-814
Hi Hm JN JO | Flagellar radial spoke protein 2 | RSP2_CHLRE 1-738
Ho Hs JP JQ | Radial spoke protein 3 | A8J2J7_CHLRE 1-516
Hx Hy JR JS | Radial spoke protein 4 | A8I550_CHLRE 1-465
IA IB Ja Jb | Flagellar radial spoke protein 6 | RSP6_CHLRE 1-459
IC IE KD KE | Radial spoke protein 7 | A0A2K3DL29_CHLRE 1-500
IF II IJ IN Jc Jd Je Jf | Radial spoke protein 9 | Q27YU5_CHLRE 1-269
IO IP Jg Jm | Radial spoke protein 10 | Q27YU4_CHLRE 1-216
IQ IR KF KG | Radial spoke protein 11 | Q27YU3_CHLRE 1-204
IS Jn | Peptidyl-prolyl cis-trans isomerase | A8I2U9_CHLRE 1-181
IT | Radial spoke protein 14 | RSP14_CHLRE 1-387
IU Ia Ih In Jo Jp KA KB | Radial spoke protein 16 | A8IKR9_CHLRE 1-346
Ib | UNKNOWN |
Ic Id Jq Jr | Nucleoside diphosphate kinase 6 | Q69B19_CHLRE 1-586
Ie Js | Cytochrome b5 heme-binding domain-containing protein | A0A2K3DCN8_CHLRE 1-230
If Ig Jt Jz | FAP385 | A8JDM3_CHLRE 1-70
JA Ka | FAP207 | A0A2K3DJP7_CHLRE 1-256
JB | FAP253 | A0A2K3D359_CHLRE 1-682
JE JF Kn Ko La Lb | 28 kDa inner dynein arm light chain, axonemal | IDLC_CHLRE 1-253
JG | AAA+ ATPase domain-containing protein | A0A2K3DSC5_CHLRE -203-4105
KC | UNKNOWN |
KZ | Radial spoke protein 15 | A0A2K3DEQ5_CHLRE 1-331
Kb | Radial spike protein 8 | Q27YU6_CHLRE 1-378
Kg | DHC_N2 domain-containing protein | A0A2K3E486_CHLRE 1-4151
Kp LR | Flagellar-associated protein 59 | A0A0A1H1F6_CHLRE 1-925
Kq LS | Flagellar-associated protein 172 | A0A0A1GYE8_CHLRE 1-904
LO | Flagellar associated protein | A0A2K3D574_CHLRE 1-2520
LP LQ | Cilia- and flagella-associated protein 58 | A8HUA7_CHLRE 1-868
LY | FAP251 | A0A2K3DY12_CHLRE 1-906
LZ | Cilia- and flagella-associated protein 61 | CFA61_CHLRE 1-1147
Lc | DHC2 | A0A2K3DE97_CHLRE 1-4165
Le | Subunit of axonemal inner dynein | A4PET3_CHLRE 1-380
Lf | Subunit of axonemal inner dynein | A9ZPM1_CHLRE 1-423
Lg | CFAP91 domain-containing protein | A0A2K3DJU2_CHLRE 1-1298
Me | AAA+ ATPase domain-containing protein | A0A2K3E2P7_CHLRE 1-4185
Mm | AAA+ ATPase domain-containing protein | A0A2K3CUR8_CHLRE 1-4209
za zb zc zd ze zf zg zh zi | Cilia- and flagella-associated protein 77 | CFA77_CHLRE 1-269 1-270
zj zk zl | Flagellar associated protein | A8J6L0_CHLRE 1-286
zr zs | Flagellar associated protein | A8JG37_CHLRE 1-144
zt zu zv zw zx zy zz | FAP1 | A8J0T8_CHLRE 1-196
Non-standard residues in 8glv #2
---
GDP — guanosine-5'-diphosphate
GTP — guanosine-5'-triphosphate
MG — magnesium ion
76 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> save /data2/zhuyun/HumanSperm/Models/CrDMTFull_96nm_8glv.cif relModel #2
> save /data2/zhuyun/HumanSperm/Models/CrDMTFull_96nm_emd40220.mrc models #1
> ui tool show Segmentations
> ui view fourup
> segmentations mouseModes false
Mouse bindings not saved; ignoring 'mouseModes false'
> ui view fourup
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event
self.enterEvent()
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 917, in enterEvent
self.resize3DSegmentationCursor()
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1009, in
resize3DSegmentationCursor
psize = self.view.pixel_size()
^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/view.py", line 1085, in pixel_size
return self.camera.view_width(p) / self.window_size[0]
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
ZeroDivisionError: division by zero
ZeroDivisionError: division by zero
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/view.py", line 1085, in pixel_size
return self.camera.view_width(p) / self.window_size[0]
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
See log for complete Python traceback.
Exception ignored in: <function Texture.__del__ at 0x7f26e043ff60>
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 3076, in __del__
raise OpenGLError('OpenGL texture was not deleted before graphics.Texture
destroyed')
chimerax.graphics.opengl.OpenGLError: OpenGL texture was not deleted before
graphics.Texture destroyed
Exception ignored in: <function Texture.__del__ at 0x7f26e043ff60>
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 3076, in __del__
raise OpenGLError('OpenGL texture was not deleted before graphics.Texture
destroyed')
chimerax.graphics.opengl.OpenGLError: OpenGL texture was not deleted before
graphics.Texture destroyed
> close session
> segmentations mouseModes false
Mouse bindings not saved; ignoring 'mouseModes false'
> segmentations mouseModes false
Mouse bindings not saved; ignoring 'mouseModes false'
> segmentations mouseModes false
Mouse bindings not saved; ignoring 'mouseModes false'
> segmentations mouseModes false
Mouse bindings not saved; ignoring 'mouseModes false'
> open 35888 fromDatabase emdb format ccp4
Summary of feedback from opening 35888 fetched from emdb
---
notes | Fetching compressed map 35888 from ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-35888/map/emd_35888.map.gz
Fetching map header 35888 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-35888/header/emd-35888.xml
Opened emdb 35888 as #1, grid size 619,646,798, pixel 1.37,1.37,1.37, shown at
step 1, values float32, fit PDB 8j07
> volume #1 region 0,0,0,618,645,797 step 4
[Repeated 1 time(s)]
> volume #1 change image level 0,0 level 5.982,0.8 level 16.92,1
> volume #1 level 1.151
> volume #1 level 0.1419
> open 8J07 fromDatabase pdb format mmcif
Summary of feedback from opening 8J07 fetched from pdb
---
note | Fetching compressed mmCIF 8j07 from http://files.rcsb.org/download/8j07.cif
8j07 title:
96nm repeat of human respiratory doublet microtubule and associated axonemal
complexes [more info...]
Chain information for 8j07 #2
---
Chain | Description | UniProt
0 4 | Dynein regulatory complex subunit 4 | DRC4_HUMAN 1-478
1 | Dynein regulatory complex protein 1 | DRC1_HUMAN 1-740
10 | Dynein regulatory complex protein 10 | DRC10_HUMAN 1-449
11 | Dynein regulatory complex protein 11 | DRC11_HUMAN 1-822
12 13 14 8 | Dynein regulatory complex protein 8 | DRC8_HUMAN 1-269
1A 1B 1C | EF-hand domain-containing family member B | EFHB_HUMAN 1-833
1D 1E 1F 1G 1H 1I 1J | Cilia- and flagella-associated protein 45 | CFA45_HUMAN 1-551
1L 1M 1N 1O 1P 1Q | Cilia- and flagella-associated protein 52 | CFA52_HUMAN 1-620
1R 1S 1T | Cilia- and flagella-associated protein 53 | CFA53_HUMAN 1-514
1V 1W | Cilia- and flagella-associated protein 95 | CFA95_HUMAN 1-229
1Y 1Z | Cilia- and flagella-associated protein 107 | CF107_HUMAN 1-194
2 | Dynein regulatory complex subunit 2 | DRC2_HUMAN 1-484
2A 2B 2C 2D 2E 2F 2G | Protein Flattop | FLTOP_HUMAN 1-177
2I 2J | Cilia- and flagella-associated protein 141 | CP141_HUMAN 1-101
2L 2M 2N 2O | Cilia- and flagella-associated protein 161 | CF161_HUMAN 1-301
2Q 2R 2S | Cilia- and flagella- associated protein 210 | CF210_HUMAN 1-552
2U 2V 2W 2X 2Y 2Z | Cilia- and flagella-associated protein 276 | CF276_HUMAN 1-169
3 | Dynein regulatory complex subunit 3 | DRC3_HUMAN 1-523
3A 3B 3C 3D 3E 3F | EF-hand domain-containing protein 1 | EFHC1_HUMAN 1-640
3G 3H 3I 3J 3K 3L 3M | EF-hand domain-containing family member C2 | EFHC2_HUMAN 1-749
3O 3P 3Q 3R 3S 3T 3U | Enkurin | ENKUR_HUMAN 1-256
3W 3X 3Y | Meiosis-specific nuclear structural protein 1 | MNS1_HUMAN 1-495
4A 4B 4C 4D 4E 4F 4G 4H 4I 4J 4K 4L 4M | Protein FAM166B | F166B_HUMAN 1-275
4O 4P 4Q 4R | Nucleoside diphosphate kinase 7 | NDK7_HUMAN 1-376
4S 4T | Piercer of microtubule wall 1 protein | PIRC1_HUMAN 1-136
4U 4V 4W | Piercer of microtubule wall 2 protein | PIRC2_HUMAN 1-121
5 | Dynein regulatory complex subunit 5 | DRC5_HUMAN 1-501
5A 5B 5C | RIB43A-like with coiled-coils protein 2 | RIBC2_HUMAN 1-382
5D 5E 5F | RIB43A-like with coiled-coils protein 1 | RIBC1_HUMAN 1-379
5H 5I 5J | Sperm-associated antigen 8 | SPAG8_HUMAN 1-485
5L 5M | Uncharacterized protein CFAP68 | CFA68_HUMAN 1-150
5O 5P 5Q 5R 5S 5T 5U 5V | Cilia- and flagella-associated protein 77 | CFA77_HUMAN 1-284
5X 5Y | Uncharacterized protein CFAP90 | CFA90_HUMAN 1-147
6A 6C 6E 6G 6I 6K 6L 6N 6O 6Q 6R 6T 6V | Sperm acrosome-associated protein 9 | SACA9_HUMAN 1-222
7 | Dynein regulatory complex subunit 7 | DRC7_HUMAN 1-874
7A 7B 7C 7D 7E 7F 7G | Protein FAM166C | F166C_HUMAN 1-201
7I 7J | Cilia- and flagella-associated protein 144 | CF144_HUMAN 1-134
8A 8B 8C 8D 8E 8F 8G 8H | Tektin-1 | TEKT1_HUMAN 1-418
8J 8K 8L 8M 8N 8O 8P 8Q | Tektin-2 | TEKT2_HUMAN 1-430
9 | Dynein regulatory complex protein 9 | DRC9_HUMAN 1-443
A B C D a b c d | Radial spoke head 1 homolog | RSPH1_HUMAN 1-309
AB AD AF AH AJ AL AN AP AR AT AV AX BB BD BF BH BJ BL BN BP BR BT BV BX CB CD CF CH CJ CL CN CP CR CT CV CX CZ DB DD DF DH DJ DL DN DP DR DT DV DX DZ EB ED EF EH EJ EL EN EP ER ET EV EX EZ FB FD FF FH FJ FL FN FP FR FT FV FX FZ GB GD GF GH GJ GL GN GP GR GT GV GX GZ HB HD HF HH HJ HL HN HP HR HT HV HX HZ IB ID IF IH IJ IL IN IP IR IT IV IX JB JD JF JH JJ JL JN JP JR JT JV JX JZ KB KD KF KH KJ KL KN KP KR KT KV KX KZ LB LD LF LH LJ LL LN LP LR LT LV LX LZ MD MF MH MJ ML MN MP MR MT MV MX MZ NB ND NF NH NJ NL NN NP NR NT NV NX NZ OB OD OF OH OJ OL ON OP OR OT OV OX PB PD PF PH PJ PL PN PP PR PT PV PX QB QD QF QH QJ QL QN QP QR QT QV QX RB RD RF RH RJ RL RN RP RR RT RV RX SB SD SF SH SJ SL SN SP SR ST SV SX TB TD TF TH TJ TL TN TP TR TT TV TX TZ UB UD UF UH UJ UL UN UP UR UT UV UX UZ VB VD VF VH VJ VL VN VP VR VT VV VX VZ WB WD WF WH WJ WL WN WP WR WT WV WX | Tubulin beta-4B chain | TBB4B_HUMAN 1-445
AC AE AG AI AK AM AO AQ AS AU AW AY AZ BA BC BE BG BI BK BM BO BQ BS BU BW BY CC CE CG CI CK CM CO CQ CS CU CW CY DC DE DG DI DK DM DO DQ DS DU DW DY EC EE EG EI EK EM EO EQ ES EU EW EY FC FE FG FI FK FM FO FQ FS FU FW FY GC GE GG GI GK GM GO GQ GS GU GW GY HA HC HE HG HI HK HM HO HQ HS HU HW HY IA IC IE IG II IK IM IO IQ IS IU IW IY JC JE JG JI JK JM JO JQ JS JU JW JY KC KE KG KI KK KM KO KQ KS KU KW KY LC LE LG LI LK LM LO LQ LS LU LW LY MA MC ME MG MI MK MM MO MQ MS MU MW MY NA NC NE NG NI NK NM NO NQ NS NU NW OA OC OE OG OI OK OM OO OQ OS OU OW OY PA PC PE PG PI PK PM PO PQ PS PU PW PY QA QC QE QG QI QK QM QO QQ QS QU QW QY RA RC RE RG RI RK RM RO RQ RS RU RW RY SC SE SG SI SK SM SO SQ SS SU SW SY TC TE TG TI TK TM TO TQ TS TU TW TY UC UE UG UI UK UM UO UQ US UU UW UY VC VE VG VI VK VM VO VQ VS VU VW VY WA WC WE WG WI WK WM WO WQ WS WU WW | Tubulin alpha-1A chain | TBA1A_HUMAN 1-451
E F e f | Radial spoke head protein 3 homolog | RSPH3_HUMAN 1-560
G H I J g h i j | Radial spoke head protein 4 homolog A | RSH4A_HUMAN 1-716
K L k l | Sperm surface protein Sp17 | SP17_HUMAN 1-151
M N O P m n o p | Radial spoke head protein 9 homolog | RSPH9_HUMAN 1-276
Q R q r | Ropporin-1-like protein | ROP1L_HUMAN 1-230
S s | Probable inactive peptidyl-prolyl cis-trans isomerase-like 6 | PPIL6_HUMAN 1-311
T t | Radial spoke head 14 homolog | RSP14_HUMAN 1-348
U V u v | DnaJ homolog subfamily B member 13 | DJB13_HUMAN 1-316
W | Calmodulin-1 | CALM1_HUMAN 1-149
X Y x y | Nucleoside diphosphate kinase homolog 5 | NDK5_HUMAN 1-212
XA XB XC XD XE XF XG XH XI XJ XK XL XM | Cilia- and flagella-associated protein 20 | CFA20_HUMAN 1-193
YB YC YD YF YG YH YI YJ YK YL YM | Parkin coregulated gene protein | PACRG_HUMAN 1-257
Z z | Cytochrome b5 domain-containing protein 1 | CB5D1_HUMAN 1-228
a0 | Unknown |
a1 a2 a3 a4 a5 a6 a7 a8 a9 b0 b1 b2 b3 b4 b5 b6 b7 b8 b9 c0 l1 l2 l3 l4 l5 l6 n1 n2 n3 n4 n5 n6 p1 p2 p3 p4 p5 p6 r1 r2 r3 r4 r5 r6 | DYNLL1 |
c1 | MORN repeat-containing protein 3 | MORN3_HUMAN 1-240
c2 | IQ and ubiquitin-like domain-containing protein | IQUB_HUMAN 1-791
c3 c4 c5 c6 | DPY30 domain-containing protein 2 | DYDC2_HUMAN 1-177
d0 | Cilia- and flagella-associated protein 61 | CFA61_HUMAN 1-1237
d1 | Cilia- and flagella-associated protein 91 | CFA91_HUMAN 1-767
d2 | Cilia- and flagella-associated protein 251 | CF251_HUMAN 1-1149
d3 | Tetratricopeptide repeat protein 29 | TTC29_HUMAN 1-475
d4 | Zinc finger MYND domain-containing protein 12 | ZMY12_HUMAN 1-365
d5 d6 d7 d8 d9 f1 | ACTA2 |
e0 e1 e2 e3 e4 e5 e6 e7 e8 e9 | Axonemal dynein light intermediate polypeptide 1 | IDLC_HUMAN 1-258
f2 | Centrin-2 | CETN2_HUMAN 1-172
g1 | Dynein axonemal heavy chain 12 | E9PG32_HUMAN 1-3960
g2 g4 | Dynein axonemal heavy chain 7 | DYH7_HUMAN 1-4024
g3 | Dynein axonemal heavy chain 3 | DYH3_HUMAN 1-4116
g5 | Dynein axonemal heavy chain 6 | DYH6_HUMAN 1-4158
g6 | Dynein axonemal heavy chain 1 | DYH1_HUMAN 1-4265
h1 h2 | Coiled-coil domain-containing protein 39 | CCD39_HUMAN 1-941
h3 h4 | Coiled-coil domain-containing protein 40 | CCD40_HUMAN 1-1142
i1 | Coiled-coil domain-containing protein 96 | CCD96_HUMAN 1-555
i2 | Coiled-coil domain-containing protein 113 | CC113_HUMAN 1-377
i3 | Cilia- and flagella-associated protein 299 | CF299_HUMAN 1-233
i4 i5 | Cilia- and flagella-associated protein 57 | CFA57_HUMAN 1-1250
i6 i8 | Cilia- and flagella-associated protein 43 | CFA43_HUMAN 1-1665
i7 i9 | Cilia- and flagella-associated protein 44 | CFA44_HUMAN 1-1854
j1 j2 | Cilia- and flagella-associated protein 58 | CFA58_HUMAN 1-872
j3 | Cilia- and flagella-associated protein 73 | CFA73_HUMAN 1-308
j4 | Cilia- and flagella-associated protein 100 | CP100_HUMAN 1-611
k1 | Dynein axonemal intermediate chain 3 | DNAI3_HUMAN 1-891
k2 | Dynein axonemal intermediate chain 4 | DNAI4_HUMAN 1-848
k3 | Dynein axonemal intermediate chain 7 | DNAI7_HUMAN 1-716
k4 m4 o4 q4 | Dynein light chain roadblock-type 1 | DLRB1_HUMAN 1-96
k5 m5 o5 q5 | Dynein light chain roadblock-type 2 | DLRB2_HUMAN 1-96
k8 | Dynein axonemal heavy chain 10 | A0A669KB38_HUMAN 1-4589
k9 | Dynein axonemal heavy chain 2 | DYH2_HUMAN 1-4427
l7 n7 p7 r7 | Dynein light chain Tctex-type protein 2B | DYT2B_HUMAN 1-142
l8 n8 p8 r8 | Dynein light chain Tctex-type 1 | DYLT1_HUMAN 1-113
m0 q0 s0 u0 | Calaxin | CLXN_HUMAN 1-211
m1 o1 q1 s1 | Dynein axonemal intermediate chain 1 | DNAI1_HUMAN 1-699
m2 o2 q2 s2 | Dynein axonemal intermediate chain 2 | DNAI2_HUMAN 1-605
m3 o3 q3 | Dynein axonemal light chain 1 | DNAL1_HUMAN 1-190
m6 o6 q6 s6 u6 | Outer dynein arm-docking complex subunit 1 | ODAD1_HUMAN 1-670
m7 q7 s7 u7 | Outer dynein arm-docking complex subunit 2 | ODAD2_HUMAN 1-1044
m8 o8 q8 s8 u8 | Outer dynein arm-docking complex subunit 3 | ODAD3_HUMAN 1-595
m9 q9 s9 u9 | Outer dynein arm-docking complex subunit 4 | ODAD4_HUMAN 1-672
n0 p0 r0 t0 | Dynein axonemal heavy chain 5 | DYH5_HUMAN 1-4624
n9 p9 r9 t9 | Dynein axonemal heavy chain 9 | DYH9_HUMAN 1-4486
v1 v2 v3 | Thioredoxin domain-containing protein 6 | TXND6_HUMAN 1-330
w | Leucine-rich repeat-containing protein 34 | LRC34_HUMAN 1-464
Non-standard residues in 8j07 #2
---
GDP — guanosine-5'-diphosphate
GTP — guanosine-5'-triphosphate
MG — magnesium ion
> volume #1 level 1.235
> volume #1 step 2
> transparency 50
> save /data2/zhuyun/HumanSperm/Models/hDMTFull_96nm_emd35888.mrc models #1
> volume #1 step 1
> save /data2/zhuyun/HumanSperm/Models/hDMTFull_96nm_8j07.cif relModel #2
> volume #1 step 2
> hide #!1 models
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
> set bgColor #ffffff00
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 500, in
_background_color_changed
label.update_drawing()
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 608, in update_drawing
d.needs_update = True
^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'needs_update'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'needs_update'
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 608, in update_drawing
d.needs_update = True
^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 500, in
_background_color_changed
label.update_drawing()
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 608, in update_drawing
d.needs_update = True
^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'needs_update'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'needs_update'
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 608, in update_drawing
d.needs_update = True
^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 500, in
_background_color_changed
label.update_drawing()
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 608, in update_drawing
d.needs_update = True
^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'needs_update'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'needs_update'
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/segmentations/ui/label.py", line 608, in update_drawing
d.needs_update = True
^^^^^^^^^^^^^^
See log for complete Python traceback.
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
OpenGL version: 3.3.0 NVIDIA 550.67
OpenGL renderer: NVIDIA GeForce RTX 4090 D/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: Supermicro
Model: X11DPi-N(T)
OS: Ubuntu 20.04 Focal Fossa
Architecture: 64bit ELF
Virtual Machine: none
CPU: 40 Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
Cache Size: 14080 KB
Memory:
total used free shared buff/cache available
Mem: 141Gi 26Gi 64Gi 415Mi 50Gi 113Gi
Swap: 2.0Gi 2.0Gi 45Mi
Graphics:
03:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41)
DeviceName: Aspeed Video 2500
Subsystem: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000]
Installed Packages:
alabaster: 0.7.16
annotated-types: 0.7.0
appdirs: 1.4.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2024.6.2
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.4.10
ChimeraX-Atomic: 1.57
ChimeraX-AtomicLibrary: 14.0.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.23.0
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8rc202406060152
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.8.dev0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.16
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StarMap: 1.2.15
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
distro: 1.9.0
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
geomdl: 5.3.1
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
joblib: 1.4.2
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
llvmlite: 0.43.0
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numba: 0.60.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 24.0
pandas: 2.2.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.46
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pyarrow: 16.1.0
pycollada: 0.8
pydantic: 2.7.3
pydantic-core: 2.18.4
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynndescent: 0.5.13
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
pyqtgraph: 0.13.7
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scikit-learn: 1.5.0
scipy: 1.13.0
setuptools: 69.5.1
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
starfile: 0.5.8
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
threadpoolctl: 3.5.0
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4
tqdm: 4.66.4
traitlets: 5.14.2
typing-extensions: 4.12.1
tzdata: 2024.1
umap-learn: 0.5.6
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 12 months ago
| Component: | Unassigned → DICOM |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ui view fourup: ZeroDivisionError |
comment:2 by , 12 months ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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This bug comes from the 1.8 release candidate, but it shouldn't affect any recent daily build or the 1.9 release candidates.