Phenix

Local EM Fitting

• Support pre-fitted models

Fit Ligand

• Mandatory resolution command arg / tool widget
• Tool's chain ID / res num widgets pass values to command
• Made command fully functional, including checking availability of chain ID + res num
• Interactive search-center adjustment

ChimeraX completed

• Support HTML in table cells
• Sequence viewer expand selection to columns
• If chains have been created, use that info in determining residue principal atom
• Log a message when computing secondary structure
• Label missing segments, and offer control over when they get labeled
• Stop auto-raising Log when logging occurs
• Avoid Modeller tool crash by using takeRow() instead of deleteRow()
• Have render/select histograms update if underlying values change
• Fixed bug showing alignment from MatchMaker if Smith-Waterman was used with selection restriction
• [KVFinder ​http://www.cgl.ucsf.edu/home/meng/jclub/kvfinder.html#/] tool/command
• Also worked on: AmberTools, atom-spec parser, profile grids, match→align