Session save: SphereModel not in MapEraser's get_class()

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.9rc202411041924 (2024-11-04 19:24:57 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.9rc202411041924 (2024-11-04)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open "D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"

Opened cryosparc_P309_J105_003_volume_map_sharp.mrc as #1, grid size
256,256,256, pixel 0.73, shown at level 0.265, step 1, values float32  
Log from Wed Nov 13 15:54:35 2024 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9rc202411041924 (2024-11-04)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "D:/GHSR/A&M/结构/ligand1
> Anamorelin/cryosparc_P309_J105_003_volume_map_sharp.mrc"

Opened cryosparc_P309_J105_003_volume_map_sharp.mrc as #1, grid size
256,256,256, pixel 0.73, shown at level 0.201, step 1, values float32  

> open "D:/GHSR/A&M/结构/ligand1 Anamorelin/GSHR-Ananmorelin-J105-coot-7.pdb"

Chain information for GSHR-Ananmorelin-J105-coot-7.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
G | No description available  
N | No description available  
R | No description available  
  

> set bgColor black

> set bgColor white

> hide #!1 models

> show #!1 models

> hide #!1 models

> volume #1 level 0.3676

> volume #1 level 0.312

> hide #!1 models

> hide surfaces

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> hide sel surfaces

[Repeated 1 time(s)]

> hide sel cartoons

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> show sel atoms

> hide sel cartoons

> show sel cartoons

[Repeated 1 time(s)]

> hide sel cartoons

> hide sel surfaces

> show #!1 models

> hide #!1 models

> hide sel surfaces

> show sel surfaces

> hide sel surfaces

[Repeated 2 time(s)]

> show sel surfaces

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> show sel cartoons

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> color (#!2 & sel) #4f3c89ff

> color (#!2 & sel) #ccaed2ff

> color (#!2 & sel) #7a4069ff

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> show #!1 models

> volume #1 level 0.2327

> surface dust #1 size 7.3

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> hide #!1 models

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> show sel atoms

> select ::name="CLR"

148 atoms, 154 bonds, 2 residues, 1 model selected  

> show sel atoms

> select /B:3-340

5108 atoms, 5155 bonds, 338 residues, 1 model selected  

> color (#!2 & sel) #77aa44ff

> color (#!2 & sel) #996666ff

> color (#!2 & sel) #966d8aff

> color (#!2 & sel) #4f3c89ff

> color (#!2 & sel) #44ff33ff

> color (#!2 & sel) #966d8aff

> color (#!2 & sel) #ffffffff

> color (#!2 & sel) #4f3c89ff

> color (#!2 & sel) #44ff33ff

> color (#!2 & sel) #966d8aff

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> color (#!2 & sel) #ccaed2ff

> color (#!2 & sel) #ccccaaff

> color (#!2 & sel) #9999ccff

> color (#!2 & sel) #99c0c2ff

> color (#!2 & sel) #9999ccff

> color (#!2 & sel) #66bb99ff

> color (#!2 & sel) #6b9794ff

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /B:3-340

5108 atoms, 5155 bonds, 338 residues, 1 model selected  

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> color (#!2 & sel) #7a4069ff

> color (#!2 & sel) #77aa44ff

> color (#!2 & sel) #ddeeccff

> color (#!2 & sel) #deceacff

> color (#!2 & sel) #6b9794ff

> color (#!2 & sel) #66bb99ff

> color (#!2 & sel) #7788ccff

> color (#!2 & sel) #78c2c4ff

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

5 models selected  

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel medium slate blue

> color sel medium purple

> color sel slate blue

[Repeated 1 time(s)]

> color sel rebecca purple

> color sel slate blue

> color sel medium purple

> color sel slate blue

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> select /A:15-394

3756 atoms, 3788 bonds, 2 pseudobonds, 228 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel salmon

> color sel chocolate

> color (#!2 & sel) #50a9b5ff

> color (#!2 & sel) #5500aaff

> color (#!2 & sel) #ee55aaff

> color (#!2 & sel) #e5a69aff

> select /B:3-340

5108 atoms, 5155 bonds, 338 residues, 1 model selected  

> color (#!2 & sel) #93212dff

> color (#!2 & sel) #993322ff

> color (#!2 & sel) #339977ff

> color (#!2 & sel) #397979ff

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> color (#!2 & sel) #7a4069ff

> color (#!2 & sel) #77aa44ff

> color (#!2 & sel) #bbffffff

> color (#!2 & sel) #bff7ffff

> color (#!2 & sel) #bff7f6ff

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> color (#!2 & sel) #78c2c4ff

> color (#!2 & sel) #7788ccff

> color (#!2 & sel) #aaaa88ff

> color (#!2 & sel) #aa83afff

> show sel surfaces

[Repeated 1 time(s)]

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

5 models selected  

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> show sel surfaces

> hide sel surfaces

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> color (#!2 & sel) #bff7f6ff

> color (#!2 & sel) #bbffffff

> color (#!2 & sel) #9933bbff

> color (#!2 & sel) #93bca4ff

> color (#!2 & sel) #9933bbff

> color (#!2 & sel) #aaffffff

> color (#!2 & sel) #aaffeeff

> color (#!2 & sel) #afe0e5ff

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

5 models selected  

> show surfaces

[Repeated 1 time(s)]

> hide surfaces

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> color (#!2 & sel) #966d8aff

> color (#!2 & sel) #996666ff

> color (#!2 & sel) #55dd55ff

> color (#!2 & sel) #5d5182ff

> color (#!2 & sel) #55dd55ff

> color (#!2 & sel) #5d5182ff

> color (#!2 & sel) #55dd55ff

> color (#!2 & sel) #110011ff

> color (#!2 & sel) #010011ff

> color (#!2 & sel) #0a0011ff

> color (#!2 & sel) #650011ff

> color (#!2 & sel) #650911ff

> color (#!2 & sel) #655a11ff

> color (#!2 & sel) #655a01ff

> color (#!2 & sel) #655a0fff

> color (#!2 & sel) #655a9eff

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

5 models selected  

> color zone #1 near dist 3.5

Invalid "near" argument: invalid atoms specifier  

> color zone #1 near all distance 3.5

> show #!1 models

> color zone #1 near all distance 3.6

> surface dust #1 size30

Expected a keyword  

> surface dust #1 size 30

> surface dust #1 size 40

> surface dust #1 size 50

> surface dust #1 size 20

> volume #1 level 0.2961

> volume #1 level 0.28

> volume #1 level 0.27

> hide #!2 models

> volume #1 level 0.275

> color zone #1 near all distance 3.8

> color zone #1 near all distance 4

> color zone #1 near all distance 4.5

> color zone #1 near all distance 4.7

> color zone #1 near all distance 4.9

> color zone #1 near all distance 5

> color zone #1 near all distance 5.2

> color zone #1 near all distance 5.5

> volume #1 level 0.28

> volume #1 level 0.285

> volume #1 level 0.29

> volume #1 level 0.295

> volume #1 level 0.3

> volume #1 level 0.28

> show #!2 models

> hide #!1 models

> select /R:37-334

4607 atoms, 4670 bonds, 1 pseudobond, 283 residues, 2 models selected  

> select /N:1-128

1915 atoms, 1935 bonds, 128 residues, 1 model selected  

> select /G:6-62

887 atoms, 893 bonds, 57 residues, 1 model selected  

> color (#!2 & sel) #397979ff

> select /B:3-340

5108 atoms, 5155 bonds, 338 residues, 1 model selected  

> color (#!2 & sel) #afe0e5ff

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

5 models selected  

> show #!1 models

> hide #!1 models

> show #!1 models

> color zone #1 near all distance 5.5

> color zone #1 near all distance 6

> color zone #1 near all distance 6.5

> color zone #1 near all distance 7

> color zone #1 near all distance 8

> hide #!1 models

> select /B

5108 atoms, 5155 bonds, 338 residues, 1 model selected  

> color (#!2 & sel) #afe0e6ff

> color (#!2 & sel) #afe017ff

> color (#!2 & sel) #afe002ff

> color (#!2 & sel) #afe018ff

> color (#!2 & sel) #afe0f5ff

> color (#!2 & sel) #afe018ff

> color (#!2 & sel) #afe002ff

> color (#!2 & sel) #afe019ff

> color (#!2 & sel) #afe0faff

> color (#!2 & sel) #afe019ff

> color (#!2 & sel) #afe002ff

> color (#!2 & sel) #afe01aff

> color (#!2 & sel) #afe002ff

> color (#!2 & sel) #afe016ff

> color (#!2 & sel) #afe0e1ff

> color (#!2 & sel) #afe016ff

> color (#!2 & sel) #afe002ff

> color (#!2 & sel) #afe019ff

> color (#!2 & sel) #afe0faff

> color (#!2 & sel) #af16faff

> color (#!2 & sel) #afdcfaff

> color (#!2 & sel) #af16faff

> color (#!2 & sel) #af02faff

> color (#!2 & sel) #af15faff

> color (#!2 & sel) #afd2faff

> color (#!2 & sel) #afe0faff

> color (#!2 & sel) #af16faff

> color (#!2 & sel) #af02faff

> color (#!2 & sel) #af14faff

> color (#!2 & sel) #afc8faff

> color (#!2 & sel) #afd2faff

> color (#!2 & sel) #afc8faff

> color (#!2 & sel) #af14faff

> color (#!2 & sel) #afd2faff

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

5 models selected  

> select /R

4755 atoms, 4824 bonds, 1 pseudobond, 285 residues, 2 models selected  

> select /G

887 atoms, 893 bonds, 57 residues, 1 model selected  

> color (#!2 & sel) #397979ff

> color (#!2 & sel) #390c79ff

> color (#!2 & sel) #390179ff

> color (#!2 & sel) #390b79ff

> color (#!2 & sel) #396e79ff

> color (#!2 & sel) #390b79ff

> color (#!2 & sel) #390179ff

> color (#!2 & sel) #390c79ff

> color (#!2 & sel) #397979ff

> color (#!2 & sel) #39790cff

> color (#!2 & sel) #397901ff

> color (#!2 & sel) #39790fff

> color (#!2 & sel) #397996ff

> color (#!2 & sel) #39790fff

> color (#!2 & sel) #397901ff

> color (#!2 & sel) #397979ff

> color (#!2 & sel) #39790cff

> color (#!2 & sel) #397901ff

> color (#!2 & sel) #39790dff

> color (#!2 & sel) #397982ff

> color (#!2 & sel) #39790dff

> color (#!2 & sel) #397901ff

> color (#!2 & sel) #39790bff

> color (#!2 & sel) #39796eff

> color (#!2 & sel) #39790bff

> color (#!2 & sel) #397901ff

> color (#!2 & sel) #39790cff

> color (#!2 & sel) #397979ff

> color (#!2 & sel) #067979ff

> color (#!2 & sel) #437979ff

> color (#!2 & sel) #067979ff

> color (#!2 & sel) #047979ff

> color (#!2 & sel) #287979ff

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

5 models selected  

> color #2 #afd2faff

> undo

> show #!1 models

> color zone #1 near all distance 8

> hide #!1 models

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> color sel #f6f6f6ff

> color sel #f3f3f3ff

> color sel #b886c8ff

> color sel #f3f3f3ff

> color sel #9a9a9aff

> color sel #9c9c9cff

> color sel #f3f3f3ff

> color sel #edf5f9ff

> color sel white

> color sel hot pink

> show #!1 models

> color zone #1 near all distance 8

> show sel surfaces

> hide #!1 models

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

6 models selected  

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> hide sel surfaces

> show sel cartoons

> show sel atoms

> hide sel cartoons

> hide sel atoms

> show sel atoms

> ui tool show "Color Actions"

> color sel orchid

> color sel medium orchid

[Repeated 1 time(s)]

> select ::name="CLR"

148 atoms, 154 bonds, 2 residues, 1 model selected  

> color sel light gray

> color zone #1 near all distance 8

> show #!1 models

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> select subtract #2

6 models selected  

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> color zone #1 near all distance 8

> select subtract #2

6 models selected  

> volume #1 level 0.26

> volume #1 level 0.298

> volume #1 level 0.28

> color zone #1 near all distance 9

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> hide #!1 models

> color zone #1 near all distance 8

> show #!1 models

> surface dust #1 size 30

> surface dust #1 size 50

> surface dust #1 size 80

> surface dust #1 size 26

> select subtract #2

6 models selected  

> hide #!1 models

> select ::name="CLR"

148 atoms, 154 bonds, 2 residues, 1 model selected  

> color sel dark gray

> color sel gray

> color zone #1 near all distance 8

> show #!1 models

> hide #!1 models

> color sel light gray

> color sel dark gray

> color zone #1 near all distance 8

> show #!1 models

> select add #2

16461 atoms, 16638 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> select subtract #2

6 models selected  

> hide #!1 models

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> color zone #1 near all distance 8

> show #!1 models

> hide #!1 models

> show #!1 models

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> hide #!2 models

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> show sel surfaces

> hide #!2 models

> show #!2 models

> hide #!2 models

> select ::name="LIG"

40 atoms, 43 bonds, 1 residue, 1 model selected  

> show #!2 models

> select ::name="CLR"

148 atoms, 154 bonds, 2 residues, 1 model selected  

> hide #!1 models

> delete H

> show #!1 models

> hide #!1 models

> color zone #1 near all distance 8

> show #!1 models

> hide #!1 models

> delete O

> color zone #1 near all distance 8

> show #!1 models

> color zone #1 near all distance 7

[Repeated 1 time(s)]

> color zone #1 near all distance 12

> color zone #1 near all distance 8

> hide #!1 models

> hide sel surfaces

> select add #2

6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> hide sel surfaces

> select subtract #2

6 models selected  

> show #!1 models

> hide #!2 models

> select add #1

2 models selected  

> select subtract #1

Nothing selected  

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> color zone #1 near #2 all dist 8

Expected a keyword  

> color zone #1 near #2 distance 8

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> select add #1

2 models selected  

> hide #!1 models

> select subtract #1

Nothing selected  

> show #!2 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> volume #1 level 0.169

> volume #1 level 0.1214

> volume #1 level 0.1532

> volume #1 level 0.05009

> volume #1 level 0.25

> hide #!2 models

> volume #1 level 0.255

> volume #1 level 0.26

> volume #1 level 0.27

> volume #1 level 0.265

> color zone #1 near #2 distance 9

> surface dust #1 size50

Expected a keyword  

> surface dust #1 size 50

> volume #1 level 0.266

> volume #1 level 0.264

> volume #1 level 0.265

> color zone #1 near #2 distance 12

> color #1 #afd2faff

> select /R

1946 atoms, 2015 bonds, 1 pseudobond, 285 residues, 2 models selected  

> show #!2 models

> hide #!1 models

> color (#!2 & sel) #655a9eff

> select ::name="CLR"

54 atoms, 60 bonds, 2 residues, 1 model selected  

> color sel dark gray

> select /A:15-394

1528 atoms, 1560 bonds, 2 pseudobonds, 228 residues, 2 models selected  

> color (#!2 & sel) #e5a69aff

> select /B:3-340

2092 atoms, 2139 bonds, 338 residues, 1 model selected  

> color (#!2 & sel) #afd2faff

> select /R:37-334

1892 atoms, 1955 bonds, 1 pseudobond, 283 residues, 2 models selected  

> select /N:1-128

781 atoms, 801 bonds, 128 residues, 1 model selected  

> color (#!2 & sel) #aa83afff

> select /B:3-340

2092 atoms, 2139 bonds, 338 residues, 1 model selected  

> select /G:6-62

353 atoms, 359 bonds, 57 residues, 1 model selected  

> color (#!2 & sel) #655a9eff

> color (#!2 & sel) #397979ff

> select add #2

6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

6 models selected  

> select ::name="LIG"

37 atoms, 40 bonds, 1 residue, 1 model selected  

> ui tool show "Color Actions"

> color sel pale violet red

> color sel orchid

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY2:" "操作成功完成。"  

[Repeated 1 time(s)]

"Unable to get device information for 20550:" "操作成功完成。"  

[Repeated 5 time(s)]

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY2:" "操作成功完成。"  

> select add #2

6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> show #!1 models

> color zone #1 near #2 distance 12

> hide #!1 models

> select subtract #2

6 models selected  

> select ::name="LIG"

37 atoms, 40 bonds, 1 residue, 1 model selected  

> color (#!2 & sel) #f6f6f6ff

> color (#!2 & sel) #e3e3e3ff

> color (#!2 & sel) #c869acff

> color (#!2 & sel) #f3f3f3ff

> color (#!2 & sel) #c8ddddff

> color (#!2 & sel) #003c87ff

> color (#!2 & sel) #ddddddff

> color (#!2 & sel) #ffffffff

> color (#!2 & sel) #fdfdfdff

> color (#!2 & sel) #edf5f9ff

> color (#!2 & sel) #363a3bff

> color (#!2 & sel) #edf5f9ff

> show #!1 models

> hide #!1 models

> ui tool show "Color Actions"

> color sel pale violet red

> color zone #1 near #2 distance 12

> show #!1 models

> hide #!1 models

> ui tool show "Color Actions"

> color sel pale violet red

> show #!1 models

> save "D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"

——— End of log from Wed Nov 13 15:54:35 2024 ———

opened ChimeraX session  

> hide #!1 models

> select add #2

6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> select subtract #2

6 models selected  

> select /R

1946 atoms, 2015 bonds, 1 pseudobond, 285 residues, 2 models selected  

> color (#!2 & sel) #655a9eff

> color (#!2 & sel) #665555ff

> color (#!2 & sel) #776666ff

> color (#!2 & sel) #655a9eff

> color (#!2 & sel) #665555ff

> color (#!2 & sel) #776666ff

> color (#!2 & sel) #7661a4ff

> select add #2

6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 3 models selected  

> select subtract #2

6 models selected  

> select ::name="LIG"

37 atoms, 40 bonds, 1 residue, 1 model selected  

> color (#!2 & sel) #8ea087ff

> color (#!2 & sel) #53bcafff

> color (#!2 & sel) #53afacff

> color (#!2 & sel) #53bcafff

> color (#!2 & sel) #53afacff

> color (#!2 & sel) #8ea087ff

> select ::name="CLR"

54 atoms, 60 bonds, 2 residues, 1 model selected  

> color sel dark gray

> select add #2

6737 atoms, 6914 bonds, 3 pseudobonds, 1037 residues, 2 models selected  

> select subtract #2

6 models selected  

> color zone #1 near all distance 8

> show #!1 models

> ui mousemode right "map eraser"

> volume erase #1 center 97.658,51.842,108.17 radius 16.371

Opened cryosparc_P309_J105_003_volume_map_sharp.mrc copy as #4, grid size
256,256,256, pixel 0.73, shown at step 1, values float32  

> volume erase #4 center 94.439,59.294,100.52 radius 7.5686

> surface dust #4 size 7.3

> color zone #1 near all distance 8

> color zone #3 near all distance 8

> color zone #4 near all distance 8

> hide #3 models

> surface dust #4 size 30

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> show #3 models

> color #3 #ffff0080

> volume erase #4 center 96.905,114.12,113.21 radius 2.9901

> volume erase #4 center 95.607,113.53,112.55 radius 2.9901

> hide #3 models

> ui mousemode right translate

> hide #!2 models

> show #!2 models

> hide #!4 models

> show #!4 models

> lighting soft

> hide #!2 models

> save "D:/GHSR/A&M/结构/ligand1 Anamorelin/map.png" width 1018 height 749
> supersample 4 transparentBackground true

> show #!2 models

> hide #!4 models

> save "D:/GHSR/A&M/结构/ligand1 Anamorelin/model.png" width 1018 height 749
> supersample 4 transparentBackground true

> save "D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\tool.py", line 170, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\\__init__.py", line 37, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\providers.py", line 56, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\providers.py", line 38, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save  
return cxs_save(session, path, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  

> save "D:/GHSR/A&M/结构/ligand1 Anamorelin/ligand1.cxs"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\tool.py", line 170, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\\__init__.py", line 37, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\providers.py", line 56, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\providers.py", line 38, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save  
return cxs_save(session, path, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  

> save "D:/GHSR/A&M/结构/ligand1 Anamorelin/1.cxs"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\tool.py", line 170, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\\__init__.py", line 37, in run_provider  
providers.run_provider(session, name)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\providers.py", line 56, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\toolbar\providers.py", line 38, in _file_save  
show_save_file_dialog(session)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save  
return cxs_save(session, path, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  

> save D:/GHSR/A&M/结构/ligand1.cxs

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 341, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 232, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 217, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\state.py", line 230, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 339, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 307, in _add_obj  
uid = self.unique_name.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 176, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of SphereModel class in ChimeraX-
MapEraser bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save  
return cxs_save(session, path, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
ValueError: error processing: '_surface_updaters' ->
<chimerax.surface.updaters.SurfaceUpdaters object at 0x000002673FFA1150> ->
<chimerax.surface.colorzone.ZoneColor object at 0x000002671EB71550>: Unable to
restore objects of SphereModel class in ChimeraX-MapEraser bundle because the
class name is not listed in the name to class table for session restore  
  
ValueError: error processing: '_surface_updaters' -> -> : Unable to restore
objects of SphereModel class in ChimeraX-MapEraser bundle because the class
name is not listed in the name to class table for session restore  
  
File "C:\Program Files\ChimeraX 1.9rc202411041924\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery  
raise ValueError(  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 31.0.101.3959
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel

Python: 3.11.4
Locale: zh_CN.cp936
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: windows

Manufacturer: HUAWEI
Model: MRGF-XX
OS: Microsoft Windows 11 家庭中文版 (Build 22631)
Memory: 16,890,716,160
MaxProcessMemory: 137,438,953,344
CPU: 16 12th Gen Intel(R) Core(TM) i7-1260P
OSLanguage: zh-CN

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 2.4.1
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.7.1
    build: 1.2.1
    certifi: 2024.8.30
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.7
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.7
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9rc202411041924
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.5
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2
    ChimeraX-Label: 1.1.11
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.2.4
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.5
    contourpy: 1.3.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.7
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.54.1
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.12.1
    html2text: 2024.2.26
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.1
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pywin32: 306
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
    WMI: 1.5.1

[Tom Goddard]

Fixed in daily build only, not 1.9.

User color zoned the map eraser sphere surface and that caused session save to fail. Very creative. Session save with just the eraser sphere was fine (it does not save in sessions). I made the color zone save code smarter so it does not attempt to save color zones for surfaces that are not saved in sessions.