![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 12 months ago
Closed 12 months ago
#16338 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.1-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x00000001fd047840 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, chimerax.graphics._graphics, chimerax.segment._segment (total: 49)
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{
"uptime" : 200000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac14,9",
"coalitionID" : 1883,
"osVersion" : {
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"build" : "24B83",
"releaseType" : "User"
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"captureTime" : "2024-11-19 12:26:56.0062 -0500",
"codeSigningMonitor" : 1,
"incident" : "B600DD90-91F8-4A14-9140-50F842363B8B",
"pid" : 36051,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-11-19 10:48:45.9015 -0500",
"procStartAbsTime" : 4881166179133,
"procExitAbsTime" : 5022530844492,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"454132FD-9822-5AEC-9914-D5DC5271F787","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "62951FCA-6198-30A9-5004-C755DB92C60F",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "04A9FC9E-F1FA-4D15-9988-6809876DB174",
"wakeTime" : 14568,
"sleepWakeUUID" : "4AD2D196-6BE8-4745-A1AC-8B17EB860447",
"sip" : "enabled",
"vmRegionInfo" : "0x727272727272 is not in any region. Bytes after previous region: 20278997578355 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_NANO 6000c0000000-6000e0000000 [512.0M] rw-\/rwx SM=PRV \n---> \n UNUSED SPACE AT END",
"exception" : {"codes":"0x0000000000000101, 0x7272727272727272","rawCodes":[257,8246779703540740722],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"UNKNOWN_0x101 at 0x7272727272727272 -> 0x0000727272727272 (possible pointer authentication failure)"},
"termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"ChimeraX","byPid":36051},
"vmregioninfo" : "0x727272727272 is not in any region. Bytes after previous region: 20278997578355 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_NANO 6000c0000000-6000e0000000 [512.0M] rw-\/rwx SM=PRV \n---> \n UNUSED SPACE AT END",
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"name" : "libqwebp.dylib"
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"name" : "libqmacheif.dylib"
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"name" : "libqtiff.dylib"
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"uuid" : "77608453-0c22-327c-909a-3e61997f035f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
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{
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"uuid" : "6ae5d9b1-7feb-31a5-b3c1-09bfbb908790",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
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{
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"uuid" : "2170e2a2-3e24-3e7d-889f-70bfe1445514",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
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{
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"uuid" : "2297c440-bc47-3988-b508-c4f43a12de4c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
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{
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"uuid" : "aaf72e4f-a4b5-3143-abe4-cd0b9c88e736",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
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{
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"uuid" : "97f0c601-577c-3e3d-9728-1b67a04a846f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
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{
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"uuid" : "73065b31-2315-3d94-8ece-5a8b66a743b4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
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{
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"uuid" : "f1242604-dcb7-30a9-a19a-182991e6e645",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
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{
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"base" : 5929549824,
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"uuid" : "117d4c42-f31b-3051-a57f-edb1c3f20c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
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{
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"base" : 6038814720,
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"uuid" : "703104dc-b212-3b8d-9c78-4f57b3c9cb18",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
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{
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"base" : 6041665536,
"size" : 49152,
"uuid" : "12c53516-421d-3f7a-a81e-95bcfdb8a3ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
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"arch" : "arm64",
"base" : 6038044672,
"size" : 32768,
"uuid" : "2c043e84-38d8-33d9-a9a4-ff18ae1f885f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so",
"name" : "_psutil_osx.abi3.so"
},
{
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"uuid" : "802f0c32-e7ad-3a81-ac8d-ae72c0022ae6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
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"base" : 6374916096,
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"uuid" : "c802abe8-4352-3827-8717-7d4c0f0892ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
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"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/segment\/_segment.cpython-311-darwin.so",
"name" : "_segment.cpython-311-darwin.so"
},
{
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"uuid" : "9fea25a4-e8ca-3f3d-901c-a53ff2bc7217",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
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"uuid" : "3b8268be-4e02-3b4a-8b41-baed2bbaacff",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
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"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
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"name" : "HIToolbox"
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"uuid" : "58694c6f-fec3-316e-a11c-b2fa3c2f6559"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=22.5G written=11.3M(0%) resident=11.3M(0%) swapped_out=0K(0%) unallocated=22.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 480K 25 \nColorSync 576K 30 \nCoreAnimation 896K 56 \nCoreGraphics 80K 5 \nCoreUI image data 2144K 27 \nFoundation 16K 1 \nKernel Alloc Once 32K 1 \nMALLOC 17.5G 253 \nMALLOC guard page 288K 18 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 752K 47 \nStack 160.2M 48 \nStack Guard 56.0M 1 \nVM_ALLOCATE 3.4G 6523 \nVM_ALLOCATE (reserved) 288.0M 4 reserved VM address space (unallocated)\n__AUTH 3612K 481 \n__AUTH_CONST 53.0M 695 \n__CTF 824 1 \n__DATA 26.0M 827 \n__DATA_CONST 29.8M 843 \n__DATA_DIRTY 1998K 251 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 613.5M 144 \n__OBJC_RW 2354K 1 \n__TEXT 1.0G 860 \n__TPRO_CONST 272K 2 \nmapped file 257.0M 59 \nowned unmapped memory 1.2G 1 \npage table in kernel 11.3M 1 \nshared memory 3696K 25 \n=========== ======= ======= \nTOTAL 24.5G 11242 \nTOTAL, minus reserved VM space 24.2G 11242 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "d2f501372303547d57c8524d6f1c3f7b7ee7b5f2",
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"rollouts" : [
{
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"factorPackIds" : {
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},
"deploymentId" : 240000116
},
{
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],
"experiments" : [
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/briannawoodbury/Desktop/prd1/wt/job026_refined_polished.mrc
Opened job026_refined_polished.mrc as #1, grid size 840,840,840, pixel 1.2,
shown at step 1, values float32
> volume #1 region 0,0,0,839,839,839 step 4
> volume #1 step 2
> lighting soft
> volume #1 change image level -0.0004424,0 level 0.005566,0.8 level 0.01294,1
> volume #1 level 0.003966
> ui tool show "Side View"
> volume #1 level 0.0009575
> ui tool show "Segment Map"
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Only showing 900 of 10778 regions.
Showing 900 of 10778 region surfaces
718924 watershed regions, grouped to 10778 regions
Showing job026_refined_polished.seg - 10778 regions, 900 surfaces
> view
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Only showing 900 of 3658 regions.
Showing 900 of 3658 region surfaces
718924 watershed regions, grouped to 3658 regions
Showing job026_refined_polished.seg - 3658 regions, 900 surfaces
> ui tool show "Side View"
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Only showing 915 of 3658 regions.
Showing 915 of 3658 region surfaces
718924 watershed regions, grouped to 3658 regions
Showing job026_refined_polished.seg - 3658 regions, 915 surfaces
> view
> select
919 models selected
> hide #!1 models
> select add #1
919 models selected
> select subtract #1
916 models selected
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Only showing 1000 of 3658 regions.
Showing 1000 of 3658 region surfaces
718924 watershed regions, grouped to 3658 regions
Showing job026_refined_polished.seg - 3658 regions, 1000 surfaces
> select add #2
1001 models selected
> select subtract #2
Nothing selected
> select add #2
1001 models selected
> select #2.131
1 model selected
> select #2.593
1 model selected
> select #2.602
1 model selected
> select #2.602
1 model selected
> select #2.98
1 model selected
> select #2.98
1 model selected
> select #2.389
1 model selected
> select #2.593
1 model selected
> select #2.592
1 model selected
> select #2.131
1 model selected
> select #2.684
1 model selected
> select #2.593
1 model selected
> select #2.199
1 model selected
> select #2.131
1 model selected
> select #2.131
1 model selected
> select #2.10
1 model selected
> select subtract #2
Nothing selected
> select add #2
1001 models selected
> select #2.160
1 model selected
> select #2.160
1 model selected
> select subtract #2
Nothing selected
> select add #2
1001 models selected
> select #2.898
1 model selected
> select #2.809
1 model selected
> select #2.815
1 model selected
> select add #2.940
2 models selected
> select add #2.978
3 models selected
> select add #2.898
4 models selected
> select add #2.809
5 models selected
> select add #2.495
6 models selected
> select add #2.924
7 models selected
> select add #2.721
8 models selected
> select add #2.813
9 models selected
> select add #2.992
10 models selected
> select subtract #2.721
9 models selected
> select subtract #2.813
8 models selected
> select subtract #2.992
7 models selected
> select subtract #2.978
6 models selected
> select subtract #2.940
5 models selected
> select subtract #2.815
4 models selected
> select subtract #2.924
3 models selected
> select subtract #2.898
2 models selected
> select subtract #2.809
1 model selected
> select subtract #2.495
Nothing selected
> select
1004 models selected
> select subtract #2.898
1003 models selected
> select subtract #2.809
1002 models selected
> select subtract #2.815
1001 models selected
> select subtract #2.940
1000 models selected
> select subtract #2.978
999 models selected
> select subtract #2.806
998 models selected
> select subtract #2.861
997 models selected
> select subtract #2.694
996 models selected
> select subtract #2.835
995 models selected
> select subtract #2.826
994 models selected
> select subtract #2.842
993 models selected
> select subtract #2.655
992 models selected
> select subtract #2.609
991 models selected
> select subtract #2.817
990 models selected
> select subtract #2.963
989 models selected
> select subtract #2.845
988 models selected
> select subtract #2.872
987 models selected
> select subtract #2.649
986 models selected
> select subtract #2.484
985 models selected
> select subtract #2.769
984 models selected
> select subtract #2.486
983 models selected
> select subtract #2.707
982 models selected
> select subtract #2.942
981 models selected
> select subtract #2.855
980 models selected
> select subtract #2.997
979 models selected
> select subtract #2.1000
978 models selected
> select subtract #2.767
977 models selected
> select subtract #2.751
976 models selected
> select subtract #2.495
975 models selected
> select subtract #2.777
974 models selected
> select subtract #2.789
973 models selected
> select subtract #2.949
972 models selected
> select subtract #2.748
971 models selected
> select subtract #2.887
970 models selected
> select subtract #2.973
969 models selected
> select subtract #2.919
968 models selected
> select subtract #2.799
967 models selected
> select subtract #2.992
966 models selected
> select subtract #2.813
965 models selected
> select subtract #2.849
964 models selected
> select subtract #2.732
963 models selected
> select subtract #2.696
962 models selected
> select subtract #2.922
961 models selected
> select subtract #2.956
960 models selected
> select subtract #2.957
959 models selected
> select subtract #2.772
958 models selected
> select subtract #2.852
957 models selected
> select subtract #2.838
956 models selected
> select subtract #2.906
955 models selected
> select subtract #2.739
954 models selected
> select subtract #2.785
953 models selected
> select subtract #2.791
952 models selected
> select subtract #2.896
951 models selected
> select subtract #2.834
950 models selected
> select subtract #2.819
949 models selected
> select subtract #2.915
948 models selected
> select subtract #2.600
947 models selected
> select subtract #2.832
946 models selected
> select subtract #2.932
945 models selected
> select subtract #2.984
944 models selected
> select subtract #2.17
943 models selected
> select subtract #2.848
942 models selected
> select subtract #2.971
941 models selected
> select add #2.838
942 models selected
> select add #2.971
943 models selected
> select subtract #2.446
942 models selected
> select subtract #2.931
941 models selected
> select subtract #2.412
940 models selected
> select subtract #2.803
939 models selected
> select subtract #2.720
938 models selected
> select subtract #2.25
937 models selected
> select subtract #2.423
936 models selected
> select subtract #2.537
935 models selected
> select subtract #2.365
934 models selected
> select subtract #2.53
933 models selected
> select subtract #2.840
932 models selected
> select subtract #2.959
931 models selected
> select subtract #2.138
930 models selected
> select subtract #2.250
929 models selected
> select subtract #2.440
928 models selected
> select add #2.440
929 models selected
> select subtract #2.443
928 models selected
> select subtract #2.279
927 models selected
> select subtract #2.353
926 models selected
> select subtract #2.312
925 models selected
> select add #2.312
926 models selected
> select subtract #2.802
925 models selected
> select subtract #2.113
924 models selected
> select subtract #2.493
923 models selected
> select subtract #2.476
922 models selected
> select subtract #2.839
921 models selected
> select subtract #2.516
920 models selected
> select subtract #2.639
919 models selected
> select subtract #2.989
918 models selected
> select subtract #2.775
917 models selected
> select subtract #2.924
916 models selected
> select subtract #2.827
915 models selected
> select subtract #2.982
914 models selected
> select subtract #2.913
913 models selected
> select subtract #2.656
912 models selected
> select subtract #2.693
911 models selected
> select subtract #2.841
910 models selected
> select add #2.861
911 models selected
> select subtract #2.920
910 models selected
> select subtract #2.861
909 models selected
> select subtract #2.858
908 models selected
> select subtract #2.977
907 models selected
> select subtract #2.343
906 models selected
> select subtract #2.667
905 models selected
> select subtract #2.914
904 models selected
> select subtract #2.747
903 models selected
> select subtract #2.641
902 models selected
> select subtract #2.950
901 models selected
> select subtract #2.916
900 models selected
> select subtract #2.599
899 models selected
> select subtract #2.770
898 models selected
> select subtract #2.856
897 models selected
> select add #2.856
898 models selected
> select subtract #2.856
897 models selected
> select subtract #2.969
896 models selected
> select subtract #2.650
895 models selected
> select subtract #2.483
894 models selected
> select subtract #2.790
893 models selected
> select subtract #2.496
892 models selected
> select subtract #2.778
891 models selected
> select subtract #2.752
890 models selected
> select subtract #2.741
889 models selected
> select subtract #2.828
888 models selected
> select subtract #2.288
887 models selected
> select subtract #2.527
886 models selected
> select subtract #2.808
885 models selected
> select subtract #2.522
884 models selected
> select subtract #2.498
883 models selected
> select subtract #2.530
882 models selected
> select subtract #2.836
881 models selected
> select subtract #2.550
880 models selected
> select subtract #2.695
879 models selected
> select subtract #2.921
878 models selected
> select subtract #2.556
877 models selected
> select subtract #2.320
876 models selected
> select subtract #2.968
875 models selected
> select subtract #2.48
874 models selected
> select add #2.48
875 models selected
> select add #2.813
876 models selected
> select subtract #2.813
875 models selected
> select #2.900
1 model selected
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Only showing 1000 of 2096 regions.
Showing 1000 of 2096 region surfaces
718924 watershed regions, grouped to 2096 regions
Showing job026_refined_polished.seg - 2096 regions, 1000 surfaces
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Only showing 1100 of 2096 regions.
Showing 1100 of 2096 region surfaces
718924 watershed regions, grouped to 2096 regions
Showing job026_refined_polished.seg - 2096 regions, 1100 surfaces
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Only showing 1200 of 2096 regions.
Showing 1200 of 2096 region surfaces
718924 watershed regions, grouped to 2096 regions
Showing job026_refined_polished.seg - 2096 regions, 1200 surfaces
Segmenting job026_refined_polished.mrc, density threshold 0.000958
Showing 1090 region surfaces
718924 watershed regions, grouped to 1090 regions
Showing job026_refined_polished.seg - 1090 regions, 1090 surfaces
> select #2.275
1 model selected
> select #2.789
1 model selected
> select #2.104
1 model selected
> select #2.115
1 model selected
> select #2.281
1 model selected
> select #2.607
1 model selected
> select #2.378
1 model selected
> select #2.372
1 model selected
> select #2.115
1 model selected
> select #2.115
1 model selected
> select #2.485
1 model selected
> select #2.373
1 model selected
> select #2.965
1 model selected
> select #2.915
1 model selected
> select #2.1016
1 model selected
> select #2.144
1 model selected
> select #2.357
1 model selected
> select #2.432
1 model selected
> select #2.468
1 model selected
> select #2.84
1 model selected
> select #2.84
1 model selected
> select #2.84
1 model selected
> select #2.84
1 model selected
> select
1094 models selected
> view
> select add #2
1094 models selected
> select #2.264
1 model selected
> select #2.422
1 model selected
> select #2.853
1 model selected
> select #2.302
1 model selected
> select #2.422
1 model selected
> select
1094 models selected
> select
1094 models selected
> select subtract #2
3 models selected
> select
1094 models selected
> select #2.862
1 model selected
> select #2.862
1 model selected
> select #2.862
1 model selected
> select #2.576
1 model selected
> select #2.735
1 model selected
> select #2.558
1 model selected
> select #2.429
1 model selected
> select
1094 models selected
> select #2.52
1 model selected
> select #2.52
1 model selected
> select #2.910
1 model selected
> select #2.592
1 model selected
> select #2.539
1 model selected
> select #2.141
1 model selected
> select #2.539
1 model selected
> select #2.715
1 model selected
> select #2.449
1 model selected
> select add #2.771
2 models selected
> select add #2.715
3 models selected
> select add #2.539
4 models selected
> select add #2.653
5 models selected
> select add #2.141
6 models selected
> select add #2.384
7 models selected
> select subtract #2.384
6 models selected
> select add #2.580
7 models selected
> select add #2.331
8 models selected
> select add #2.602
9 models selected
> select add #2.305
10 models selected
> select add #2.320
11 models selected
> select add #2.458
12 models selected
> select add #2.532
13 models selected
> select add #2.216
14 models selected
> select add #2.228
15 models selected
> select add #2.439
16 models selected
> select add #2.310
17 models selected
> select add #2.574
18 models selected
> select add #2.183
19 models selected
> select add #2.80
20 models selected
> select add #2.317
21 models selected
> select add #2.763
22 models selected
> select add #2.384
23 models selected
> select add #2.231
24 models selected
> select add #2.180
25 models selected
> select add #2.787
26 models selected
> select add #2.139
27 models selected
> select add #2.698
28 models selected
> select add #2.494
29 models selected
> select add #2.508
30 models selected
> select add #2.475
31 models selected
> select add #2.202
32 models selected
> select add #2.632
33 models selected
> select add #2.345
34 models selected
> select add #2.747
35 models selected
> select add #2.152
36 models selected
> select add #2.873
37 models selected
> select add #2.615
38 models selected
Drag select of 937740, 1683 of 68520 triangles, 937733, 3092 of 66224
triangles, 937520, 394 of 43612 triangles, 937826, 230 of 44124 triangles,
937824, 44 of 36888 triangles, 937773, 64 of 38988 triangles, 937855, 2244 of
34276 triangles, 937739, 531 of 35424 triangles, 937731, 3227 of 34128
triangles, 937783, 718 of 28256 triangles, 937730, 6865 of 59140 triangles,
937698, 4592 of 26460 triangles, 937131, 2071 of 25116 triangles, 937741, 1052
of 25332 triangles, 937813, 1840 of 41592 triangles, 936939, 1431 of 19208
triangles, 936430, 2821 of 21624 triangles, 937793, 1323 of 19088 triangles,
935934, 1102 of 16276 triangles, 937915, 477 of 36320 triangles, 937521, 3404
of 19408 triangles, 935700, 129 of 16016 triangles, 937877, 72 of 19228
triangles, 937905, 2281 of 21220 triangles, 937822, 3645 of 19180 triangles,
937647, 570 of 23104 triangles, 936752, 16 of 19880 triangles, 936809, 18 of
18180 triangles, 937768, 3028 of 31280 triangles, 937728, 603 of 27780
triangles, 935586, 264 of 14012 triangles, 935300, 1760 of 13976 triangles,
937371, 1605 of 17716 triangles, 937893, 7262 of 31696 triangles, 937360, 608
of 26784 triangles, 936211, 2384 of 13496 triangles, 937355, 1510 of 22380
triangles, 937617, 4499 of 19516 triangles, 937489, 814 of 15104 triangles,
935818, 97 of 13412 triangles, 937721, 1512 of 15308 triangles, 937775, 967 of
21344 triangles, 936079, 2528 of 13324 triangles, 937913, 210 of 15504
triangles, 936134, 4247 of 12320 triangles, 937764, 866 of 14984 triangles,
937374, 914 of 11364 triangles, 935939, 107 of 8736 triangles, 937759, 42 of
5852 triangles, 929735, 509 of 5812 triangles, 927414, 1653 of 2188 triangles
Drag select of 937740, 1855 of 68520 triangles, 937733, 917 of 66224
triangles, 937752, 629 of 70584 triangles, 937520, 443 of 43612 triangles,
937773, 332 of 38988 triangles, 937855, 561 of 34276 triangles, 937739, 1370
of 35424 triangles, 937783, 221 of 28256 triangles, 937918, 13 of 21476
triangles, 937730, 2237 of 59140 triangles, 937698, 2199 of 26460 triangles,
937851, 114 of 28288 triangles, 936939, 407 of 19208 triangles, 937793, 436 of
19088 triangles, 937915, 17 of 36320 triangles, 937521, 91 of 19408 triangles,
937877, 1055 of 19228 triangles, 937905, 619 of 21220 triangles, 937822, 674
of 19180 triangles, 937768, 451 of 31280 triangles, 935586, 443 of 14012
triangles, 937371, 1804 of 17716 triangles, 937893, 1331 of 31696 triangles,
936027, 236 of 12340 triangles, 935866, 505 of 11836 triangles, 936134, 572 of
12320 triangles, 937764, 497 of 14984 triangles, 935160, 157 of 9116
triangles, 937774, 94 of 9668 triangles, 935939, 553 of 8736 triangles,
937424, 283 of 14448 triangles, 937427, 645 of 12568 triangles, 932806, 613 of
7800 triangles, 932802, 19 of 6284 triangles, 937823, 5 of 7496 triangles,
929735, 217 of 5812 triangles, 937779, 1253 of 5776 triangles, 937544, 4 of
3360 triangles, 926789, 99 of 252 triangles
> select add #2.786
77 models selected
> select subtract #2.873
76 models selected
> select subtract #2.458
75 models selected
> select subtract #2.786
74 models selected
> select add #2.150
75 models selected
> select add #2.592
76 models selected
> select add #2.107
77 models selected
> select add #2.646
78 models selected
> select subtract #2.646
77 models selected
> select add #2.169
78 models selected
> select add #2.458
79 models selected
> select add #2.921
80 models selected
> select subtract #2.458
79 models selected
> select add #2.910
80 models selected
> select add #2.786
81 models selected
> select add #2.873
82 models selected
> select subtract #2.449
81 models selected
> select add #2.449
82 models selected
> select subtract #2.317
81 models selected
> select subtract #2.152
80 models selected
> select subtract #2.653
79 models selected
> select subtract #2.384
78 models selected
> select subtract #2.539
77 models selected
> select subtract #2.715
76 models selected
> select subtract #2.449
75 models selected
Drag select of 937818, 786 of 69052 triangles, 937863, 101 of 56424 triangles,
937370, 5494 of 20368 triangles, 937892, 9051 of 25960 triangles, 935689, 6164
of 19836 triangles, 935927, 5899 of 18452 triangles, 935243, 6483 of 18380
triangles, 937568, 4863 of 22200 triangles, 936535, 817 of 22376 triangles,
937840, 3774 of 18512 triangles, 937537, 6545 of 22056 triangles, 937038, 882
of 20576 triangles, 937795, 726 of 20304 triangles, 936542, 1091 of 20900
triangles, 936179, 850 of 16180 triangles, 937397, 7135 of 21376 triangles,
935235, 2039 of 15780 triangles, 937542, 526 of 21716 triangles, 935922, 3861
of 16080 triangles, 937234, 3745 of 18392 triangles, 937680, 964 of 18216
triangles, 936752, 360 of 19880 triangles, 937089, 11116 of 17816 triangles,
935938, 7179 of 13772 triangles, 937270, 815 of 19392 triangles, 936413, 7572
of 19540 triangles, 935597, 8710 of 14300 triangles, 937634, 8736 of 19032
triangles, 937559, 528 of 16684 triangles, 935787, 10002 of 14284 triangles,
935794, 7654 of 14436 triangles, 935121, 291 of 13972 triangles, 933784, 4882
of 13168 triangles, 935292, 737 of 11884 triangles, 936077, 2265 of 13200
triangles, 936131, 2185 of 13480 triangles, 936658, 1715 of 15064 triangles,
935710, 5665 of 11808 triangles, 935328, 1307 of 13932 triangles, 935078, 6271
of 14412 triangles, 936120, 7312 of 13408 triangles, 935081, 2633 of 14456
triangles, 932612, 5020 of 10596 triangles, 935038, 571 of 11820 triangles,
935044, 3627 of 11768 triangles, 933365, 6004 of 11788 triangles, 935430, 4359
of 9292 triangles, 937460, 1376 of 10516 triangles, 934397, 1278 of 5660
triangles
Drag select of 937818, 153 of 69052 triangles, 937734, 22329 of 66144
triangles, 937863, 18342 of 56424 triangles, 937894, 27522 of 58196 triangles,
937763, 811 of 48616 triangles, 937785, 6571 of 37244 triangles, 937858, 19597
of 37312 triangles, 937762, 6 of 34268 triangles, 937767, 1330 of 33284
triangles, 937784, 6275 of 28332 triangles, 937914, 11283 of 21516 triangles,
937848, 937370, 4905 of 20368 triangles, 937892, 993 of 25960 triangles,
937897, 21365 of 25936 triangles, 937850, 9496 of 28328 triangles, 937896,
13913 of 24908 triangles, 937294, 12902 of 24820 triangles, 937115, 16813 of
24820 triangles, 935774, 16858 of 20772 triangles, 937849, 7819 of 22848
triangles, 937875, 16075 of 21884 triangles, 935689, 114 of 19836 triangles,
937124, 9142 of 21260 triangles, 935729, 13122 of 19672 triangles, 936204,
935114, 10247 of 19356 triangles, 935741, 3979 of 18524 triangles, 935927,
8679 of 18452 triangles, 937568, 5068 of 22200 triangles, 936394, 6164 of
21304 triangles, 936384, 3352 of 21348 triangles, 936535, 18258 of 22376
triangles, 937519, 9472 of 24204 triangles, 936517, 16227 of 21060 triangles,
936428, 356 of 21060 triangles, 937529, 937412, 2442 of 23344 triangles,
937716, 13941 of 23372 triangles, 936610, 937654, 937394, 21631 of 22616
triangles, 935449, 13004 of 16952 triangles, 937397, 8851 of 21376 triangles,
937711, 935174, 13028 of 16244 triangles, 935416, 2582 of 16260 triangles,
935708, 10825 of 16320 triangles, 937120, 6293 of 19468 triangles, 937880,
14113 of 18084 triangles, 936078, 11403 of 14508 triangles, 937312, 452 of
18952 triangles, 937134, 14714 of 18940 triangles, 937597, 3645 of 20652
triangles, 935229, 16390 of 16856 triangles, 935822, 935235, 10480 of 15780
triangles, 936031, 7898 of 15760 triangles, 935584, 1356 of 15768 triangles,
937835, 12348 of 19524 triangles, 937542, 16285 of 21716 triangles, 935209,
2522 of 14884 triangles, 937234, 9008 of 18392 triangles, 937644, 5414 of
16200 triangles, 937500, 2556 of 18404 triangles, 937490, 18358 of 18448
triangles, 937025, 2691 of 18076 triangles, 937001, 14848 of 18108 triangles,
935938, 48 of 13772 triangles, 937193, 3583 of 18912 triangles, 935816, 9682
of 15412 triangles, 936988, 16945 of 16952 triangles, 936998, 3361 of 16952
triangles, 937676, 19130 of 22748 triangles, 936413, 7137 of 19540 triangles,
936421, 13165 of 19524 triangles, 937206, 15308 of 17440 triangles, 937082,
14741 of 18968 triangles, 935597, 111 of 14300 triangles, 936731, 18688 of
18884 triangles, 937700, 14530 of 18628 triangles, 933809, 13359 of 13984
triangles, 937634, 1952 of 19032 triangles, 937380, 5424 of 19544 triangles,
935988, 937559, 10671 of 16684 triangles, 936924, 937658, 15906 of 18292
triangles, 935121, 7201 of 13972 triangles, 935840, 13025 of 13724 triangles,
936334, 16539 of 16792 triangles, 937623, 10284 of 16552 triangles, 936937,
15152 of 16388 triangles, 933096, 936212, 936559, 2539 of 16892 triangles,
935256, 936077, 7430 of 13200 triangles, 936153, 8091 of 11956 triangles,
933527, 7393 of 12068 triangles, 936213, 8702 of 13360 triangles, 936490,
10776 of 14956 triangles, 936324, 4290 of 14876 triangles, 935890, 9950 of
13680 triangles, 935859, 6074 of 13604 triangles, 935876, 935078, 2787 of
14412 triangles, 936027, 1416 of 12340 triangles, 937369, 10803 of 14620
triangles, 935081, 9589 of 14456 triangles, 936107, 332 of 11976 triangles,
935516, 138 of 10884 triangles, 936140, 11907 of 12408 triangles, 937492,
15119 of 15372 triangles, 937389, 12179 of 12192 triangles, 936210, 935044,
2269 of 11768 triangles, 935430, 209 of 9292 triangles, 937584, 933323, 6348
of 9016 triangles, 935303, 7457 of 9280 triangles, 933919, 11075 of 12048
triangles, 937460, 6480 of 10516 triangles, 933965, 933724, 10170 of 11340
triangles, 933990, 6662 of 9624 triangles, 935486, 7757 of 9268 triangles,
937859, 5510 of 9872 triangles, 937353, 2399 of 10860 triangles, 935080, 1382
of 9152 triangles, 936834, 5244 of 8808 triangles, 937440, 690 of 8624
triangles, 937536, 8142 of 8812 triangles, 937811, 7322 of 7648 triangles,
936986, 1572 of 6808 triangles, 937151, 932796, 2646 of 7124 triangles,
933200, 937706, 1070 of 6500 triangles, 933360, 210 of 6284 triangles, 933280,
6009 of 6028 triangles, 937908, 2443 of 5332 triangles, 934516, 5046 of 5992
triangles, 928069, 934397, 2772 of 5660 triangles, 933557, 916029
> select add #2.321
218 models selected
> select add #2.553
219 models selected
> select add #2.583
220 models selected
> select add #2.792
221 models selected
> select add #2.57
222 models selected
> select add #2.597
223 models selected
> select add #2.270
224 models selected
> select add #2.468
225 models selected
> select add #2.823
226 models selected
> select add #2.246
227 models selected
> select subtract #2.150
226 models selected
> select subtract #2.592
225 models selected
> select add #2.592
226 models selected
> select subtract #2.107
225 models selected
> select add #2.107
226 models selected
> select add #2.72
227 models selected
> select add #2.471
228 models selected
> select add #2.905
229 models selected
> select add #2.484
230 models selected
> select add #2.696
231 models selected
> select add #2.147
232 models selected
> select add #2.684
233 models selected
> select add #2.339
234 models selected
> select subtract #2.414
233 models selected
> select subtract #2.718
232 models selected
> select add #2.718
233 models selected
> select subtract #2.441
232 models selected
> select add #2.120
233 models selected
> select add #2.137
234 models selected
> select add #2.199
235 models selected
> select add #2.110
236 models selected
> select add #2.349
237 models selected
> select add #2.465
238 models selected
> select add #2.609
239 models selected
> select add #2.545
240 models selected
> select add #2.436
241 models selected
> select add #2.84
242 models selected
> select add #2.453
243 models selected
> select add #2.357
244 models selected
> select add #2.336
245 models selected
> select subtract #2.336
244 models selected
> select add #2.125
245 models selected
> select add #2.675
246 models selected
> select add #2.627
247 models selected
> select add #2.446
248 models selected
> select add #2.482
249 models selected
> select add #2.176
250 models selected
> select add #2.241
251 models selected
> select add #2.144
252 models selected
> select subtract #2.609
251 models selected
> select add #2.609
252 models selected
> select add #2.432
253 models selected
> select add #2.492
254 models selected
> select add #2.313
255 models selected
> select add #2.855
256 models selected
> select add #2.365
257 models selected
> select add #2.719
258 models selected
> select add #2.470
259 models selected
> select add #2.167
260 models selected
> select add #2.403
261 models selected
> select add #2.561
262 models selected
> select add #2.634
263 models selected
> select add #2.395
264 models selected
> select add #2.775
265 models selected
> select add #2.521
266 models selected
> select add #2.518
267 models selected
> select add #2.206
268 models selected
> select subtract #2.231
267 models selected
> select subtract #2.180
266 models selected
> select add #2.180
267 models selected
> select add #2.231
268 models selected
> select add #2.917
269 models selected
Drag select of 937847, 334 of 68520 triangles, 937740, 5074 of 68520
triangles, 937520, 1773 of 43612 triangles, 937382, 318 of 43596 triangles,
937890, 3232 of 35412 triangles, 937739, 3262 of 35424 triangles, 937918, 455
of 21476 triangles, 937756, 3134 of 49064 triangles, 937754, 183 of 49140
triangles, 937794, 4349 of 22336 triangles, 935697, 1172 of 20116 triangles,
935725, 4080 of 18928 triangles, 937770, 1841 of 32268 triangles, 937768, 3226
of 31280 triangles, 937712, 86 of 19676 triangles, 937709, 318 of 19784
triangles, 937281, 134 of 17816 triangles, 935784, 3159 of 14672 triangles,
937893, 40 of 31696 triangles, 937839, 869 of 15600 triangles, 937825, 1383 of
15620 triangles, 936164, 502 of 13340 triangles, 936110, 692 of 13212
triangles, 937360, 565 of 26784 triangles, 935538, 1612 of 14112 triangles,
935801, 5691 of 12092 triangles, 937907, 42 of 13584 triangles, 935779, 1222
of 11724 triangles, 935866, 2469 of 11836 triangles, 937444, 514 of 12296
triangles, 937439, 124 of 12284 triangles, 935490, 2121 of 9488 triangles,
937690, 1662 of 9608 triangles, 937580, 657 of 9520 triangles, 937687, 3051 of
11076 triangles, 937774, 2868 of 9668 triangles, 933455, 52 of 10928
triangles, 937424, 3531 of 14448 triangles, 937410, 1769 of 14320 triangles,
937427, 4399 of 12568 triangles, 937425, 3157 of 12580 triangles, 937295, 41
of 7936 triangles, 933237, 544 of 7208 triangles, 934933, 91 of 5860 triangles
> select clear
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,9
Model Number: MPHF3LL/A
Chip: Apple M2 Pro
Total Number of Cores: 12 (8 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.41.5
OS Loader Version: 11881.41.5
Software:
System Software Overview:
System Version: macOS 15.1 (24B83)
Kernel Version: Darwin 24.1.0
Time since boot: 6 days, 5 hours, 34 minutes
Graphics/Displays:
Apple M2 Pro:
Chipset Model: Apple M2 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 19
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
SAMSUNG:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: On
Mirror Status: Master Mirror
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Mirror: On
Mirror Status: Hardware Mirror
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 12 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 12 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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