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#16193 closed defect (duplicate)

Ca RMSD header wrong

Reported by:	vdalves@…	Owned by:
Priority:	normal	Milestone:
Component:	Sequence	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-6.8.0-47-generic-x86_64-with-glibc2.39
ChimeraX Version: 1.9.dev202410240539 (2024-10-24 05:39:21 UTC)
Description
Hello
I was following your Youtube tutorial about coloring by C-alpha RMSD.
I cannot make sense of the units that appear on the histogram from Render/Select By Attribute.
I as expecting Angstrom, but 3.09762 as minimum is strange (see Screenshot attached). Also because on the tutorial the minimum value is around 0.17.
Thank you

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  

UCSF ChimeraX version: 1.9.dev202410240539 (2024-10-24)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 4bql format mmcif fromDatabase pdb

4bql title:  
Crystal structure of archaeal actin [more info...]  

Chain information for 4bql #1  
---  
Chain | Description | UniProt  
A B C D | ACTIN/ACTIN FAMILY PROTEIN | A3MWN5_PYRCJ 1-432  

Non-standard residues in 4bql #1  
---  
ADP — adenosine-5'-diphosphate  
MG — magnesium ion  

4bql mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| software_defined_assembly  


> preset "overall look" "publication 1 (silhouettes)"

Using preset: Overall Look / Publication 1 (Silhouettes)  
Preset expands to these ChimeraX commands:



   set bg white
   graphics silhouettes t
   lighting depthCue f



> delete /B,C,D

> open 1j6z

1j6z title:  
Uncomplexed actin [more info...]  

Chain information for 1j6z #2  
---  
Chain | Description | UniProt  
A | ACTIN ALPHA 1 | ACTS_RABIT 2-375  

Non-standard residues in 1j6z #2  
---  
ADP — adenosine-5'-diphosphate  
CA — calcium ion  
RHO — tetramethylrhodamine-5-maleimide (TMR)  

5 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> matchmaker #2 to #1 showAlignment true

Computing secondary structure  
[Repeated 1 time(s)]  Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  

Matchmaker 4bql, chain A (#1) with 1j6z, chain A (#2), sequence alignment
score = 412.6  
Alignment identifier is 1  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Hiding conservation header for alignment 1  
Chains used in RMSD evaluation for alignment 1: 4bql #1/A, 1j6z #2/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1  
RMSD between 177 pruned atom pairs is 1.198 angstroms; (across all 349 pairs:
4.965)  


> hide atoms

> ui tool show "Render/Select by Attribute"

QTextCursor::setPosition: Position '73' out of range  

[Repeated 1 time(s)]

QTextCursor::setPosition: Position '2' out of range  

QTextCursor::setPosition: Position '3' out of range  

QTextCursor::setPosition: Position '4' out of range  

QTextCursor::setPosition: Position '5' out of range  

QTextCursor::setPosition: Position '6' out of range  

QTextCursor::setPosition: Position '7' out of range  

QTextCursor::setPosition: Position '8' out of range  

QTextCursor::setPosition: Position '9' out of range  

QTextCursor::setPosition: Position '10' out of range  

QTextCursor::setPosition: Position '11' out of range  

QTextCursor::setPosition: Position '12' out of range  

QTextCursor::setPosition: Position '13' out of range  

QTextCursor::setPosition: Position '14' out of range  

QTextCursor::setPosition: Position '15' out of range  

QTextCursor::setPosition: Position '16' out of range  

QTextCursor::setPosition: Position '17' out of range  

QTextCursor::setPosition: Position '18' out of range  

QTextCursor::setPosition: Position '19' out of range  

QTextCursor::setPosition: Position '20' out of range  

QTextCursor::setPosition: Position '21' out of range  

QTextCursor::setPosition: Position '22' out of range  

QTextCursor::setPosition: Position '23' out of range  

QTextCursor::setPosition: Position '24' out of range  

QTextCursor::setPosition: Position '25' out of range  

QTextCursor::setPosition: Position '26' out of range  

QTextCursor::setPosition: Position '27' out of range  

QTextCursor::setPosition: Position '28' out of range  

QTextCursor::setPosition: Position '29' out of range  

QTextCursor::setPosition: Position '30' out of range  

QTextCursor::setPosition: Position '31' out of range  

QTextCursor::setPosition: Position '32' out of range  

QTextCursor::setPosition: Position '33' out of range  

QTextCursor::setPosition: Position '34' out of range  

QTextCursor::setPosition: Position '35' out of range  

QTextCursor::setPosition: Position '36' out of range  

QTextCursor::setPosition: Position '37' out of range  

QTextCursor::setPosition: Position '38' out of range  

QTextCursor::setPosition: Position '39' out of range  

QTextCursor::setPosition: Position '40' out of range  

QTextCursor::setPosition: Position '41' out of range  

QTextCursor::setPosition: Position '42' out of range  

QTextCursor::setPosition: Position '43' out of range  

QTextCursor::setPosition: Position '44' out of range  

QTextCursor::setPosition: Position '45' out of range  

[Repeated 1 time(s)]

QTextCursor::setPosition: Position '46' out of range  

QTextCursor::setPosition: Position '47' out of range  

QTextCursor::setPosition: Position '48' out of range  

QTextCursor::setPosition: Position '49' out of range  

QTextCursor::setPosition: Position '50' out of range  

QTextCursor::setPosition: Position '51' out of range  

QTextCursor::setPosition: Position '52' out of range  

QTextCursor::setPosition: Position '53' out of range  

QTextCursor::setPosition: Position '54' out of range  

QTextCursor::setPosition: Position '55' out of range  

QTextCursor::setPosition: Position '56' out of range  

QTextCursor::setPosition: Position '57' out of range  

QTextCursor::setPosition: Position '58' out of range  

QTextCursor::setPosition: Position '59' out of range  

QTextCursor::setPosition: Position '60' out of range  

QTextCursor::setPosition: Position '61' out of range  

QTextCursor::setPosition: Position '62' out of range  

QTextCursor::setPosition: Position '63' out of range  

QTextCursor::setPosition: Position '64' out of range  

QTextCursor::setPosition: Position '65' out of range  

QTextCursor::setPosition: Position '66' out of range  

QTextCursor::setPosition: Position '67' out of range  

QTextCursor::setPosition: Position '68' out of range  

QTextCursor::setPosition: Position '69' out of range  

QTextCursor::setPosition: Position '70' out of range  

QTextCursor::setPosition: Position '71' out of range  

QTextCursor::setPosition: Position '72' out of range  

QTextCursor::setPosition: Position '73' out of range  

QTextCursor::setPosition: Position '74' out of range  

QTextCursor::setPosition: Position '75' out of range  

QTextCursor::setPosition: Position '76' out of range  

QTextCursor::setPosition: Position '77' out of range  

QTextCursor::setPosition: Position '78' out of range  

QTextCursor::setPosition: Position '79' out of range  

QTextCursor::setPosition: Position '80' out of range  

QTextCursor::setPosition: Position '81' out of range  

QTextCursor::setPosition: Position '80' out of range  

QTextCursor::setPosition: Position '79' out of range  

QTextCursor::setPosition: Position '78' out of range  

QTextCursor::setPosition: Position '77' out of range  

QTextCursor::setPosition: Position '78' out of range  

QTextCursor::setPosition: Position '79' out of range  

QTextCursor::setPosition: Position '80' out of range  

QTextCursor::setPosition: Position '81' out of range  

QTextCursor::setPosition: Position '82' out of range  

QTextCursor::setPosition: Position '83' out of range  

QTextCursor::setPosition: Position '84' out of range  

QTextCursor::setPosition: Position '85' out of range  

QTextCursor::setPosition: Position '86' out of range  

QTextCursor::setPosition: Position '87' out of range  

QTextCursor::setPosition: Position '88' out of range  

QTextCursor::setPosition: Position '89' out of range  

QTextCursor::setPosition: Position '90' out of range  

QTextCursor::setPosition: Position '91' out of range  

QTextCursor::setPosition: Position '92' out of range  

QTextCursor::setPosition: Position '93' out of range  

QTextCursor::setPosition: Position '94' out of range  

QTextCursor::setPosition: Position '95' out of range  

QTextCursor::setPosition: Position '96' out of range  

QTextCursor::setPosition: Position '97' out of range  

QTextCursor::setPosition: Position '98' out of range  

QTextCursor::setPosition: Position '99' out of range  

QTextCursor::setPosition: Position '100' out of range  

QTextCursor::setPosition: Position '101' out of range  

QTextCursor::setPosition: Position '102' out of range  

QTextCursor::setPosition: Position '103' out of range  

QTextCursor::setPosition: Position '104' out of range  

QTextCursor::setPosition: Position '105' out of range  

QTextCursor::setPosition: Position '106' out of range  

QTextCursor::setPosition: Position '107' out of range  

QTextCursor::setPosition: Position '108' out of range  

QTextCursor::setPosition: Position '109' out of range  

QTextCursor::setPosition: Position '110' out of range  

QTextCursor::setPosition: Position '111' out of range  

QTextCursor::setPosition: Position '112' out of range  

QTextCursor::setPosition: Position '113' out of range  

QTextCursor::setPosition: Position '114' out of range  

QTextCursor::setPosition: Position '115' out of range  

QTextCursor::setPosition: Position '116' out of range  

QTextCursor::setPosition: Position '117' out of range  

QTextCursor::setPosition: Position '118' out of range  

QTextCursor::setPosition: Position '119' out of range  

QTextCursor::setPosition: Position '120' out of range  

QTextCursor::setPosition: Position '121' out of range  

QTextCursor::setPosition: Position '122' out of range  

QTextCursor::setPosition: Position '123' out of range  

QTextCursor::setPosition: Position '124' out of range  

QTextCursor::setPosition: Position '125' out of range  

QTextCursor::setPosition: Position '126' out of range  

QTextCursor::setPosition: Position '127' out of range  

QTextCursor::setPosition: Position '128' out of range  

QTextCursor::setPosition: Position '129' out of range  

QTextCursor::setPosition: Position '130' out of range  

QTextCursor::setPosition: Position '131' out of range  

QTextCursor::setPosition: Position '132' out of range  

QTextCursor::setPosition: Position '133' out of range  

QTextCursor::setPosition: Position '134' out of range  

QTextCursor::setPosition: Position '135' out of range  

QTextCursor::setPosition: Position '136' out of range  

QTextCursor::setPosition: Position '137' out of range  

QTextCursor::setPosition: Position '138' out of range  

QTextCursor::setPosition: Position '139' out of range  

QTextCursor::setPosition: Position '140' out of range  

QTextCursor::setPosition: Position '141' out of range  

QTextCursor::setPosition: Position '142' out of range  

QTextCursor::setPosition: Position '143' out of range  

QTextCursor::setPosition: Position '144' out of range  

QTextCursor::setPosition: Position '145' out of range  

QTextCursor::setPosition: Position '146' out of range  

QTextCursor::setPosition: Position '147' out of range  

QTextCursor::setPosition: Position '148' out of range  

QTextCursor::setPosition: Position '149' out of range  

QTextCursor::setPosition: Position '150' out of range  

QTextCursor::setPosition: Position '151' out of range  

QTextCursor::setPosition: Position '152' out of range  

QTextCursor::setPosition: Position '153' out of range  

QTextCursor::setPosition: Position '154' out of range  

QTextCursor::setPosition: Position '155' out of range  

QTextCursor::setPosition: Position '156' out of range  

QTextCursor::setPosition: Position '157' out of range  

QTextCursor::setPosition: Position '158' out of range  

QTextCursor::setPosition: Position '159' out of range  

QTextCursor::setPosition: Position '160' out of range  

QTextCursor::setPosition: Position '161' out of range  

QTextCursor::setPosition: Position '162' out of range  

QTextCursor::setPosition: Position '163' out of range  

QTextCursor::setPosition: Position '164' out of range  

QTextCursor::setPosition: Position '163' out of range  

QTextCursor::setPosition: Position '164' out of range  

QTextCursor::setPosition: Position '165' out of range  

QTextCursor::setPosition: Position '166' out of range  

QTextCursor::setPosition: Position '167' out of range  

QTextCursor::setPosition: Position '168' out of range  

QTextCursor::setPosition: Position '169' out of range  

QTextCursor::setPosition: Position '170' out of range  

QTextCursor::setPosition: Position '171' out of range  

QTextCursor::setPosition: Position '172' out of range  

QTextCursor::setPosition: Position '173' out of range  

QTextCursor::setPosition: Position '174' out of range  

QTextCursor::setPosition: Position '175' out of range  

QTextCursor::setPosition: Position '176' out of range  

QTextCursor::setPosition: Position '177' out of range  

QTextCursor::setPosition: Position '178' out of range  

QTextCursor::setPosition: Position '179' out of range  

QTextCursor::setPosition: Position '180' out of range  

QTextCursor::setPosition: Position '181' out of range  

QTextCursor::setPosition: Position '182' out of range  

QTextCursor::setPosition: Position '181' out of range  

QTextCursor::setPosition: Position '182' out of range  

QTextCursor::setPosition: Position '183' out of range  

QTextCursor::setPosition: Position '184' out of range  

QTextCursor::setPosition: Position '185' out of range  

QTextCursor::setPosition: Position '186' out of range  

QTextCursor::setPosition: Position '187' out of range  

QTextCursor::setPosition: Position '188' out of range  

QTextCursor::setPosition: Position '189' out of range  

QTextCursor::setPosition: Position '190' out of range  

QTextCursor::setPosition: Position '191' out of range  

QTextCursor::setPosition: Position '192' out of range  

QTextCursor::setPosition: Position '193' out of range  

QTextCursor::setPosition: Position '194' out of range  

QTextCursor::setPosition: Position '193' out of range  

QTextCursor::setPosition: Position '192' out of range  

QTextCursor::setPosition: Position '191' out of range  

QTextCursor::setPosition: Position '192' out of range  

QTextCursor::setPosition: Position '193' out of range  

QTextCursor::setPosition: Position '194' out of range  

QTextCursor::setPosition: Position '195' out of range  

QTextCursor::setPosition: Position '196' out of range  

QTextCursor::setPosition: Position '197' out of range  

QTextCursor::setPosition: Position '198' out of range  

QTextCursor::setPosition: Position '199' out of range  

QTextCursor::setPosition: Position '200' out of range  

QTextCursor::setPosition: Position '201' out of range  

QTextCursor::setPosition: Position '202' out of range  

QTextCursor::setPosition: Position '203' out of range  

QTextCursor::setPosition: Position '204' out of range  

QTextCursor::setPosition: Position '205' out of range  

QTextCursor::setPosition: Position '206' out of range  

QTextCursor::setPosition: Position '207' out of range  

QTextCursor::setPosition: Position '208' out of range  

QTextCursor::setPosition: Position '209' out of range  

QTextCursor::setPosition: Position '210' out of range  

QTextCursor::setPosition: Position '211' out of range  

QTextCursor::setPosition: Position '212' out of range  

QTextCursor::setPosition: Position '213' out of range  

QTextCursor::setPosition: Position '214' out of range  

QTextCursor::setPosition: Position '215' out of range  

QTextCursor::setPosition: Position '216' out of range  

QTextCursor::setPosition: Position '217' out of range  

QTextCursor::setPosition: Position '218' out of range  

QTextCursor::setPosition: Position '219' out of range  

QTextCursor::setPosition: Position '220' out of range  

QTextCursor::setPosition: Position '221' out of range  

QTextCursor::setPosition: Position '222' out of range  

QTextCursor::setPosition: Position '223' out of range  

QTextCursor::setPosition: Position '224' out of range  

QTextCursor::setPosition: Position '225' out of range  

QTextCursor::setPosition: Position '226' out of range  

QTextCursor::setPosition: Position '225' out of range  

QTextCursor::setPosition: Position '224' out of range  

QTextCursor::setPosition: Position '225' out of range  

QTextCursor::setPosition: Position '226' out of range  

QTextCursor::setPosition: Position '227' out of range  

QTextCursor::setPosition: Position '228' out of range  

QTextCursor::setPosition: Position '227' out of range  

QTextCursor::setPosition: Position '226' out of range  

QTextCursor::setPosition: Position '225' out of range  

QTextCursor::setPosition: Position '226' out of range  

QTextCursor::setPosition: Position '227' out of range  

QTextCursor::setPosition: Position '228' out of range  

QTextCursor::setPosition: Position '229' out of range  

[Repeated 1 time(s)]

QTextCursor::setPosition: Position '230' out of range  

QTextCursor::setPosition: Position '231' out of range  

QTextCursor::setPosition: Position '232' out of range  

QTextCursor::setPosition: Position '233' out of range  

QTextCursor::setPosition: Position '234' out of range  

QTextCursor::setPosition: Position '235' out of range  

QTextCursor::setPosition: Position '236' out of range  

QTextCursor::setPosition: Position '237' out of range  

QTextCursor::setPosition: Position '238' out of range  

QTextCursor::setPosition: Position '239' out of range  

QTextCursor::setPosition: Position '240' out of range  

QTextCursor::setPosition: Position '241' out of range  

QTextCursor::setPosition: Position '242' out of range  

QTextCursor::setPosition: Position '243' out of range  

QTextCursor::setPosition: Position '244' out of range  

QTextCursor::setPosition: Position '245' out of range  

QTextCursor::setPosition: Position '246' out of range  

QTextCursor::setPosition: Position '247' out of range  

QTextCursor::setPosition: Position '248' out of range  

QTextCursor::setPosition: Position '249' out of range  

QTextCursor::setPosition: Position '250' out of range  

QTextCursor::setPosition: Position '251' out of range  

QTextCursor::setPosition: Position '252' out of range  

QTextCursor::setPosition: Position '253' out of range  

QTextCursor::setPosition: Position '254' out of range  

QTextCursor::setPosition: Position '255' out of range  

QTextCursor::setPosition: Position '256' out of range  

QTextCursor::setPosition: Position '257' out of range  

QTextCursor::setPosition: Position '258' out of range  

QTextCursor::setPosition: Position '259' out of range  

QTextCursor::setPosition: Position '260' out of range  

QTextCursor::setPosition: Position '261' out of range  

QTextCursor::setPosition: Position '262' out of range  

QTextCursor::setPosition: Position '263' out of range  

QTextCursor::setPosition: Position '264' out of range  

QTextCursor::setPosition: Position '265' out of range  

QTextCursor::setPosition: Position '266' out of range  

QTextCursor::setPosition: Position '267' out of range  

QTextCursor::setPosition: Position '268' out of range  

QTextCursor::setPosition: Position '269' out of range  

QTextCursor::setPosition: Position '268' out of range  

QTextCursor::setPosition: Position '267' out of range  

QTextCursor::setPosition: Position '268' out of range  

QTextCursor::setPosition: Position '269' out of range  

QTextCursor::setPosition: Position '270' out of range  

QTextCursor::setPosition: Position '271' out of range  

QTextCursor::setPosition: Position '272' out of range  

QTextCursor::setPosition: Position '273' out of range  

QTextCursor::setPosition: Position '274' out of range  

QTextCursor::setPosition: Position '275' out of range  

QTextCursor::setPosition: Position '276' out of range  

QTextCursor::setPosition: Position '277' out of range  

QTextCursor::setPosition: Position '278' out of range  

QTextCursor::setPosition: Position '279' out of range  

QTextCursor::setPosition: Position '280' out of range  

QTextCursor::setPosition: Position '281' out of range  

QTextCursor::setPosition: Position '282' out of range  

QTextCursor::setPosition: Position '283' out of range  

QTextCursor::setPosition: Position '284' out of range  

QTextCursor::setPosition: Position '283' out of range  

QTextCursor::setPosition: Position '282' out of range  

QTextCursor::setPosition: Position '281' out of range  

QTextCursor::setPosition: Position '280' out of range  

QTextCursor::setPosition: Position '281' out of range  

QTextCursor::setPosition: Position '280' out of range  

QTextCursor::setPosition: Position '279' out of range  

QTextCursor::setPosition: Position '280' out of range  

QTextCursor::setPosition: Position '281' out of range  

QTextCursor::setPosition: Position '282' out of range  

QTextCursor::setPosition: Position '283' out of range  

QTextCursor::setPosition: Position '284' out of range  

QTextCursor::setPosition: Position '285' out of range  

QTextCursor::setPosition: Position '286' out of range  

QTextCursor::setPosition: Position '287' out of range  

QTextCursor::setPosition: Position '288' out of range  

QTextCursor::setPosition: Position '289' out of range  

QTextCursor::setPosition: Position '290' out of range  

QTextCursor::setPosition: Position '291' out of range  

QTextCursor::setPosition: Position '292' out of range  

QTextCursor::setPosition: Position '293' out of range  

QTextCursor::setPosition: Position '294' out of range  

QTextCursor::setPosition: Position '295' out of range  

QTextCursor::setPosition: Position '296' out of range  

QTextCursor::setPosition: Position '297' out of range  

QTextCursor::setPosition: Position '298' out of range  

QTextCursor::setPosition: Position '299' out of range  

QTextCursor::setPosition: Position '300' out of range  

QTextCursor::setPosition: Position '301' out of range  

QTextCursor::setPosition: Position '302' out of range  

QTextCursor::setPosition: Position '301' out of range  

QTextCursor::setPosition: Position '300' out of range  

QTextCursor::setPosition: Position '299' out of range  

QTextCursor::setPosition: Position '298' out of range  

QTextCursor::setPosition: Position '299' out of range  

QTextCursor::setPosition: Position '300' out of range  

QTextCursor::setPosition: Position '301' out of range  

QTextCursor::setPosition: Position '302' out of range  

QTextCursor::setPosition: Position '303' out of range  




OpenGL version: 3.3.0 NVIDIA 535.183.01
OpenGL renderer: NVIDIA GeForce GTX 970/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=cinnamon
XDG_SESSION_DESKTOP=cinnamon
XDG_CURRENT_DESKTOP=X-Cinnamon
DISPLAY=:0
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7D54
OS: Linux Mint 22
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 AMD Ryzen 7 5800X 8-Core Processor
Cache Size: 512 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            31Gi       8.9Gi       1.0Gi       127Mi        21Gi        22Gi
	Swap:          2.0Gi       512Ki       2.0Gi

Graphics:
	2d:00.0 VGA compatible controller [0300]: NVIDIA Corporation GM204 [GeForce GTX 970] [10de:13c2] (rev a1)	
	Subsystem: ASUSTeK Computer Inc. GM204 [GeForce GTX 970] [1043:853f]	
	Kernel driver in use: nvidia

Installed Packages:
   alabaster: 1.0.0
   appdirs: 1.4.4
   asttokens: 2.4.1
   babel: 2.16.0
   beautifulsoup4: 4.12.3
   blockdiag: 3.0.0
   blosc2: 2.7.1
   build: 1.2.1
   certifi: 2024.8.30
   cftime: 1.6.4.post1
   charset-normalizer: 3.4.0
   ChimeraX-AddCharge: 1.5.17
   ChimeraX-AddH: 2.2.6
   ChimeraX-AlignmentAlgorithms: 2.0.2
   ChimeraX-AlignmentHdrs: 3.5
   ChimeraX-AlignmentMatrices: 2.1
   ChimeraX-Alignments: 2.15.1
   ChimeraX-AlphaFold: 1.0.1
   ChimeraX-AltlocExplorer: 1.1.2
   ChimeraX-AmberInfo: 1.0
   ChimeraX-Arrays: 1.1
   ChimeraX-Atomic: 1.58.7
   ChimeraX-AtomicLibrary: 14.1.8
   ChimeraX-AtomSearch: 2.0.1
   ChimeraX-AxesPlanes: 2.4
   ChimeraX-BasicActions: 1.1.2
   ChimeraX-BILD: 1.0
   ChimeraX-BlastProtein: 2.4.7
   ChimeraX-BondRot: 2.0.4
   ChimeraX-BugReporter: 1.0.1
   ChimeraX-BuildStructure: 2.13
   ChimeraX-Bumps: 1.0
   ChimeraX-BundleBuilder: 1.3.4
   ChimeraX-ButtonPanel: 1.0.1
   ChimeraX-CageBuilder: 1.0.1
   ChimeraX-CellPack: 1.0
   ChimeraX-Centroids: 1.4
   ChimeraX-ChangeChains: 1.1
   ChimeraX-CheckWaters: 1.4
   ChimeraX-ChemGroup: 2.0.1
   ChimeraX-Clashes: 2.3
   ChimeraX-ColorActions: 1.0.5
   ChimeraX-ColorGlobe: 1.0
   ChimeraX-ColorKey: 1.5.6
   ChimeraX-CommandLine: 1.2.5
   ChimeraX-ConnectStructure: 2.0.1
   ChimeraX-Contacts: 1.0.1
   ChimeraX-Core: 1.9.dev202410240539
   ChimeraX-CoreFormats: 1.2
   ChimeraX-coulombic: 1.4.4
   ChimeraX-Crosslinks: 1.0
   ChimeraX-Crystal: 1.0
   ChimeraX-CrystalContacts: 1.0.1
   ChimeraX-DataFormats: 1.2.3
   ChimeraX-Dicom: 1.2.5
   ChimeraX-DiffPlot: 1.0
   ChimeraX-DistMonitor: 1.4.2
   ChimeraX-DockPrep: 1.1.3
   ChimeraX-Dssp: 2.0
   ChimeraX-EMDB-SFF: 1.0
   ChimeraX-ESMFold: 1.0
   ChimeraX-FileHistory: 1.0.1
   ChimeraX-FunctionKey: 1.0.1
   ChimeraX-Geometry: 1.3
   ChimeraX-gltf: 1.0
   ChimeraX-Graphics: 1.4.1
   ChimeraX-Hbonds: 2.5
   ChimeraX-Help: 1.3
   ChimeraX-HKCage: 1.3
   ChimeraX-IHM: 1.1
   ChimeraX-ImageFormats: 1.2
   ChimeraX-IMOD: 1.0
   ChimeraX-IO: 1.0.3
   ChimeraX-ItemsInspection: 1.0.1
   ChimeraX-IUPAC: 1.0
   ChimeraX-KVFinder: 1.2
   ChimeraX-Label: 1.1.11
   ChimeraX-LinuxSupport: 1.0.1
   ChimeraX-ListInfo: 1.2.2
   ChimeraX-Log: 1.2
   ChimeraX-LookingGlass: 1.1
   ChimeraX-Maestro: 1.9.1
   ChimeraX-Map: 1.3
   ChimeraX-MapData: 2.0
   ChimeraX-MapEraser: 1.0.1
   ChimeraX-MapFilter: 2.0.1
   ChimeraX-MapFit: 2.0
   ChimeraX-MapSeries: 2.1.1
   ChimeraX-Markers: 1.0.1
   ChimeraX-Mask: 1.0.2
   ChimeraX-MatchMaker: 2.1.6
   ChimeraX-MCopy: 1.0
   ChimeraX-MDcrds: 2.7.1
   ChimeraX-MedicalToolbar: 1.1
   ChimeraX-Meeting: 1.0.1
   ChimeraX-MLP: 1.1.1
   ChimeraX-mmCIF: 2.14.2
   ChimeraX-MMTF: 2.2
   ChimeraX-ModelArchive: 1.0
   ChimeraX-Modeller: 1.5.17
   ChimeraX-ModelPanel: 1.5
   ChimeraX-ModelSeries: 1.0.1
   ChimeraX-Mol2: 2.0.3
   ChimeraX-Mole: 1.0
   ChimeraX-Morph: 1.0.2
   ChimeraX-MouseModes: 1.2
   ChimeraX-Movie: 1.0
   ChimeraX-MutationScores: 1.0
   ChimeraX-Neuron: 1.0
   ChimeraX-Nifti: 1.2
   ChimeraX-NMRSTAR: 1.0.2
   ChimeraX-NRRD: 1.2
   ChimeraX-Nucleotides: 2.0.3
   ChimeraX-OpenCommand: 1.14
   ChimeraX-OrthoPick: 1.0.1
   ChimeraX-PDB: 2.7.6
   ChimeraX-PDBBio: 1.0.1
   ChimeraX-PDBLibrary: 1.0.4
   ChimeraX-PDBMatrices: 1.0
   ChimeraX-PickBlobs: 1.0.1
   ChimeraX-Positions: 1.0
   ChimeraX-PresetMgr: 1.1.2
   ChimeraX-PubChem: 2.2
   ChimeraX-ReadPbonds: 1.0.1
   ChimeraX-Registration: 1.1.2
   ChimeraX-RemoteControl: 1.0
   ChimeraX-RenderByAttr: 1.6
   ChimeraX-RenumberResidues: 1.1
   ChimeraX-ResidueFit: 1.0.1
   ChimeraX-RestServer: 1.3.1
   ChimeraX-RNALayout: 1.0
   ChimeraX-RotamerLibMgr: 4.0
   ChimeraX-RotamerLibsDunbrack: 2.0
   ChimeraX-RotamerLibsDynameomics: 2.0
   ChimeraX-RotamerLibsRichardson: 2.0
   ChimeraX-SaveCommand: 1.5.1
   ChimeraX-SchemeMgr: 1.0
   ChimeraX-SDF: 2.0.2
   ChimeraX-Segger: 1.0
   ChimeraX-Segment: 1.0.1
   ChimeraX-Segmentations: 3.2.1
   ChimeraX-SelInspector: 1.0
   ChimeraX-SeqView: 2.14
   ChimeraX-Shape: 1.0.1
   ChimeraX-Shell: 1.0.1
   ChimeraX-Shortcuts: 1.2.0
   ChimeraX-ShowSequences: 1.0.3
   ChimeraX-SideView: 1.0.1
   ChimeraX-SimilarStructures: 1.0.1
   ChimeraX-Smiles: 2.1.2
   ChimeraX-SmoothLines: 1.0
   ChimeraX-SpaceNavigator: 1.0
   ChimeraX-StdCommands: 1.18.1
   ChimeraX-STL: 1.0.1
   ChimeraX-Storm: 1.0
   ChimeraX-StructMeasure: 1.2.1
   ChimeraX-Struts: 1.0.1
   ChimeraX-Surface: 1.0.1
   ChimeraX-SwapAA: 2.0.1
   ChimeraX-SwapRes: 2.5
   ChimeraX-TapeMeasure: 1.0
   ChimeraX-TaskManager: 1.0
   ChimeraX-Test: 1.0
   ChimeraX-Toolbar: 1.2.3
   ChimeraX-ToolshedUtils: 1.2.4
   ChimeraX-Topography: 1.0
   ChimeraX-ToQuest: 1.0
   ChimeraX-Tug: 1.0.1
   ChimeraX-UI: 1.41
   ChimeraX-uniprot: 2.3.1
   ChimeraX-UnitCell: 1.0.1
   ChimeraX-ViewDockX: 1.4.4
   ChimeraX-VIPERdb: 1.0
   ChimeraX-Vive: 1.1
   ChimeraX-VolumeMenu: 1.0.1
   ChimeraX-vrml: 1.0
   ChimeraX-VTK: 1.0
   ChimeraX-WavefrontOBJ: 1.0
   ChimeraX-WebCam: 1.0.2
   ChimeraX-WebServices: 1.1.4
   ChimeraX-Zone: 1.0.1
   colorama: 0.4.6
   comm: 0.2.2
   contourpy: 1.3.0
   cxservices: 1.2.3
   cycler: 0.12.1
   Cython: 3.0.10
   debugpy: 1.8.7
   decorator: 5.1.1
   distro: 1.9.0
   docutils: 0.21.2
   executing: 2.1.0
   filelock: 3.15.4
   fonttools: 4.54.1
   funcparserlib: 2.0.0a0
   glfw: 2.7.0
   grako: 3.16.5
   h5py: 3.12.1
   html2text: 2024.2.26
   idna: 3.10
   ihm: 1.3
   imagecodecs: 2024.6.1
   imagesize: 1.4.1
   ipykernel: 6.29.5
   ipython: 8.26.0
   ipywidgets: 8.1.5
   jedi: 0.19.1
   Jinja2: 3.1.4
   jupyter_client: 8.6.2
   jupyter_core: 5.7.2
   jupyterlab_widgets: 3.0.13
   kiwisolver: 1.4.7
   line_profiler: 4.1.3
   lxml: 5.2.2
   lz4: 4.3.3
   MarkupSafe: 3.0.2
   matplotlib: 3.9.2
   matplotlib-inline: 0.1.7
   msgpack: 1.0.8
   ndindex: 1.9.2
   nest-asyncio: 1.6.0
   netCDF4: 1.6.5
   networkx: 3.3
   nibabel: 5.2.0
   nptyping: 2.5.0
   numexpr: 2.10.1
   numpy: 1.26.4
   openvr: 1.26.701
   packaging: 23.2
   ParmEd: 4.2.2
   parso: 0.8.4
   pep517: 0.13.1
   pexpect: 4.9.0
   pillow: 10.4.0
   pip: 24.2
   pkginfo: 1.11.1
   platformdirs: 4.3.6
   prompt_toolkit: 3.0.48
   psutil: 6.0.0
   ptyprocess: 0.7.0
   pure_eval: 0.2.3
   py-cpuinfo: 9.0.0
   pycollada: 0.8
   pydicom: 2.4.4
   Pygments: 2.18.0
   pynmrstar: 3.3.4
   pynrrd: 1.0.0
   PyOpenGL: 3.1.7
   PyOpenGL-accelerate: 3.1.7
   pyopenxr: 1.0.3401
   pyparsing: 3.2.0
   pyproject_hooks: 1.2.0
   PyQt6-commercial: 6.7.1
   PyQt6-Qt6: 6.7.3
   PyQt6-WebEngine-commercial: 6.7.0
   PyQt6-WebEngine-Qt6: 6.7.3
   PyQt6-WebEngineSubwheel-Qt6: 6.7.3
   PyQt6_sip: 13.8.0
   python-dateutil: 2.9.0.post0
   pytz: 2024.2
   pyzmq: 26.2.0
   qtconsole: 5.5.2
   QtPy: 2.4.1
   qtshim: 1.0
   RandomWords: 0.4.0
   requests: 2.32.3
   scipy: 1.14.0
   setuptools: 72.1.0
   sfftk-rw: 0.8.1
   six: 1.16.0
   snowballstemmer: 2.2.0
   sortedcontainers: 2.4.0
   soupsieve: 2.6
   Sphinx: 8.0.2
   sphinx-autodoc-typehints: 2.2.3
   sphinxcontrib-applehelp: 2.0.0
   sphinxcontrib-blockdiag: 3.0.0
   sphinxcontrib-devhelp: 2.0.0
   sphinxcontrib-htmlhelp: 2.1.0
   sphinxcontrib-jsmath: 1.0.1
   sphinxcontrib-qthelp: 2.0.0
   sphinxcontrib-serializinghtml: 2.0.0
   stack-data: 0.6.3
   superqt: 0.6.3
   tables: 3.10.1
   tcia_utils: 1.5.1
   tifffile: 2024.7.24
   tinyarray: 1.2.4
   tornado: 6.4.1
   traitlets: 5.14.3
   typing_extensions: 4.12.2
   tzdata: 2024.2
   urllib3: 2.2.3
   wcwidth: 0.2.13
   webcolors: 24.6.0
   wheel: 0.43.0
   wheel-filename: 1.4.1
   widgetsnbextension: 4.0.13
File attachment: Screenshot from 2024-10-25 16-54-12.png

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Screenshot from 2024-10-25 16-54-12.png (54.0 KB ) - added by vdalves@… 13 months ago.: Added by email2trac

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Change History (2)

by vdalves@…, 13 months ago

Attachment:	Screenshot from 2024-10-25 16-54-12.png added

Added by email2trac

comment:1 by Eric Pettersen, 13 months ago

Component:	Unassigned → Sequence
Platform:	→ all
Project:	→ ChimeraX
Resolution:	→ duplicate
Status:	new → closed
Summary:	ChimeraX bug report submission → Ca RMSD header wrong

Inadvertent duplicate

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