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Opened 13 months ago
Closed 13 months ago
#16179 closed defect (can't reproduce)
Crash in registration dialog
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.dev202211090831 (2022-11-09 08:31:09 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00007000214c2000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001fcbc000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001ecb9000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001dcb6000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001ccb3000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001bcb0000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001acad000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700019caa000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700018ca7000 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ssl.py", line 1099 in read
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ssl.py", line 1241 in recv_into
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/socket.py", line 704 in readinto
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/http/client.py", line 281 in _read_status
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/http/client.py", line 320 in begin
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/http/client.py", line 1377 in getresponse
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py", line 1350 in do_open
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py", line 1389 in https_open
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py", line 494 in _call_chain
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py", line 534 in _open
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py", line 517 in open
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py", line 214 in urlopen
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/toolshed/available.py", line 49 in load
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/toolshed/__init__.py", line 456 in reload_available
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x0000000109cc6600 (most recent call first):
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/ask.py", line 69 in _ask_gui
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/ask.py", line 31 in ask
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/registration/nag.py", line 220 in _ask_to_register
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/registration/nag.py", line 214 in _delayed_ask
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 54 in draw_new_frame
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 158 in update_graphics_now
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py", line 145 in resizeEvent
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py", line 57 in event
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Users/lorenzobasile/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2024-10-24 14:41:45.00 +0200","app_version":"1.6.0","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.4 (21G526)","incident_id":"03C7E79A-3937-4A44-99BA-870F34BE8298","name":"ChimeraX"}
{
"uptime" : 640000,
"procLaunch" : "2024-10-24 14:41:02.5038 +0200",
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookAir7,2",
"procStartAbsTime" : 645246934129950,
"coalitionID" : 2671,
"osVersion" : {
"train" : "macOS 12.6.4",
"build" : "21G526",
"releaseType" : "User"
},
"captureTime" : "2024-10-24 14:41:19.4108 +0200",
"incident" : "03C7E79A-3937-4A44-99BA-870F34BE8298",
"bug_type" : "309",
"pid" : 61342,
"procExitAbsTime" : 645263770965146,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/Users\/USER\/Desktop\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.0","CFBundleVersion":"1.6.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"DEA6B4B7-FDC5-53AB-8CB2-6C9C3D07D8F8","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "1C8D16BF-1A9E-B03A-4407-9A69472442E0",
"wakeTime" : 133,
"sleepWakeUUID" : "85C329BA-9E90-43E7-B420-A33BABCCC0DF",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4365557760\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 104352000-104353000 [ 4K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
"isCorpse" : 1,
"exception" : {"codes":"0x000000000000000d, 0x0000000000000000","rawCodes":[13,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"UNKNOWN_0xD at 0x0000000000000000"},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4365557760\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 104352000-104353000 [ 4K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"vmSummary" : "ReadOnly portion of Libraries: Total=1.4G resident=0K(0%) swapped_out_or_unallocated=1.4G(100%)\nWritable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 1264K 8 \nCG image 52K 10 \nColorSync 224K 26 \nCoreAnimation 140K 21 \nCoreGraphics 16K 3 \nCoreServices 84K 1 \nCoreUI image data 1188K 18 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 341.3M 488 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 8K 2 \nObjC additional data 15K 1 \nOpenGL GLSL 256K 3 \nSTACK GUARD 152K 38 \nStack 301.8M 39 \nStack Guard 56.0M 1 \nVM_ALLOCATE 64.4M 48 \n__CTF 756 1 \n__DATA 44.8M 673 \n__DATA_CONST 31.1M 339 \n__DATA_DIRTY 1641K 213 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 676.5M 149 \n__TEXT 791.9M 671 \n__UNICODE 592K 1 \ndyld private memory 1184K 3 \nmapped file 113.1M 42 \nshared memory 784K 20 \n=========== ======= ======= \nTOTAL 2.8G 2836 \nTOTAL, minus reserved VM space 2.4G 2836 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6112dda2fc54bc3389840642",
"factorPackIds" : {
"SIRI_DICTATION_ASSETS" : "620aec83b02b354d3afd2f50"
},
"deploymentId" : 240000145
},
{
"rolloutId" : "63582c5f8a53461413999550",
"factorPackIds" : {
},
"deploymentId" : 240000002
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.dev202211090831 (2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Mon May 29 14:42:18 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Fri May 19 14:54:42 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Thu May 18 13:09:59 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Wed May 17 16:50:35 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
restore_snapshot for "Volume" returned None
restore_snapshot for "VolumeSurface" returned None
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Log from Wed May 17 12:30:08 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Log from Mon May 15 12:12:02 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Log from Mon May 15 10:30:42 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Log from Fri May 12 16:33:39 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/MBOx12_refmac20.pdb
MBOx12_refmac20.pdb title:
MOLREP --- /Vers 11.7.03; 13.07.2020/ [more info...]
Chain information for MBOx12_refmac20.pdb #1
---
Chain | Description
A | No description available
B | No description available
Non-standard residues in MBOx12_refmac20.pdb #1
---
F5D — (F5D)
GOL — (GOL)
MG — (MG)
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> ui tool show "Color Actions"
> color sel forest green
> color sel olive drab
> color sel dark turquoise
> color sel dodger blue
> color sel medium spring green
> color sel dark turquoise
> color sel turquoise
> color sel medium turquoise
> color sel turquoise
> color sel medium turquoise
> color sel light sea green
> color sel medium turquoise
> color sel light sea green
> color sel dark turquoise
> color sel medium turquoise
> color sel sea green
> color sel forest green
> color sel sea green
> color sel olive drab
> color sel sea green
> color sel forest green
> color sel sea green
> color sel lime green
> color sel olive drab
> color sel sea green
> color sel green
> color sel sea green
> color sel medium sea green
> color sel sea green
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> ui tool show "Color Actions"
> color sel medium sea green
> color sel dark olive green
> color sel dark cyan
> select clear
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> ui tool show "Color Actions"
> color sel teal
> color sel steel blue
> color sel cadet blue
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel yellow
> color sel byhetero
> select clear
> select ::name="MG"
3 atoms, 3 residues, 1 model selected
> color sel blue
> select clear
> set bgColor white
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting simple
[Repeated 1 time(s)]
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting full
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Fri May 12 16:33:39 2023 ———
opened ChimeraX session
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select clear
> select ::name="HOH"
676 atoms, 676 residues, 1 model selected
> hide sel atoms
> select clear
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> hide sel atoms
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> show sel atoms
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> hide sel atoms
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> show sel cartoons
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> show sel atoms
> select clear
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Mon May 15 10:30:42 2023 ———
opened ChimeraX session
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dark cyan
> color sel teal
> color sel light sea green
> color sel cadet blue
> color sel dodger blue
> color sel turquoise
> color sel dodger blue
> color sel turquoise
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel byhetero
> color sel yellow
> color sel byhetero
> select clear
> open
> "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Cavity/channel-
> probe1,3 - 3,1.mrc"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 1, step 1, values int8
> volume #2 level 0.07725
> transparency 10 surfaces
> transparency 50 surfaces
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Mon May 15 12:12:02 2023 ———
opened ChimeraX session
> open
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/channel-001.mrc
Opened channel-001.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level 1,
step 1, values int8
> volume #3 level 0.2083
> volume #3 level 0.08079
> volume #3 color gainsboro
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Wed May 17 12:30:08 2023 ———
opened ChimeraX session
> open
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/channel_ChainB.mrc
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
1, step 1, values int8
> volume #3 level 0.08443
> volume #3 color gainsboro
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Wed May 17 16:50:35 2023 ———
opened ChimeraX session
> ui mousemode right zoom
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Thu May 18 13:09:59 2023 ———
opened ChimeraX session
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> color sel light sea green
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> ui tool show "Color Actions"
> color sel yellow green
> color sel forest green
> color sel olive
> color sel green
> color sel blue
> color sel dark cyan
> color sel turquoise
> color sel dark turquoise
> color sel medium spring green
> color sel cornflower blue
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel yellow
> color sel byhetero
> select clear
> ui mousemode right zoom
> save
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Dimer.jpg
> width 1344 height 765 supersample 3
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Fri May 19 14:54:42 2023 ———
opened ChimeraX session
> ui mousemode right zoom
> ui mousemode right label
> label delete residues
> label #1/A:5
> label delete residues
> text N
Unknown command: text N
> 2dlabels N
> ui mousemode right translate
> ui mousemode right zoom
> 2dlabels N
> 2dlabels 'N'
Expected 'all' or a 2d label name or a label models specifier or a keyword
> 2dlabels text N
> ui mousemode right "move label"
> 2dlabels #4.1 xpos 0.372 ypos 0.956
> 2dlabels #4.1 xpos 0.365 ypos 0.958
> 2dlabels text N
> 2dlabels #4.2 xpos 0.534 ypos 0.955
> 2dlabels text C
> 2dlabels #4.3 xpos 0.277 ypos 0.776
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Mon May 29 14:42:18 2023 ———
opened ChimeraX session
Qt has caught an exception thrown from an event handler. Throwing
exceptions from an event handler is not supported in Qt.
You must not let any exception whatsoever propagate through Qt code.
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.dev202211090831 (2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Mon May 29 14:42:18 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Fri May 19 14:54:42 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Thu May 18 13:09:59 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
0.0844, step 1, values int8
Log from Wed May 17 16:50:35 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
restore_snapshot for "Volume" returned None
restore_snapshot for "VolumeSurface" returned None
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Log from Wed May 17 12:30:08 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 0.0772, step 1, values int8
Log from Mon May 15 12:12:02 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Log from Mon May 15 10:30:42 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
> open "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
Log from Fri May 12 16:33:39 2023UCSF ChimeraX version: 1.6.dev202211090831
(2022-11-09)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/MBOx12_refmac20.pdb
MBOx12_refmac20.pdb title:
MOLREP --- /Vers 11.7.03; 13.07.2020/ [more info...]
Chain information for MBOx12_refmac20.pdb #1
---
Chain | Description
A | No description available
B | No description available
Non-standard residues in MBOx12_refmac20.pdb #1
---
F5D — (F5D)
GOL — (GOL)
MG — (MG)
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> ui tool show "Color Actions"
> color sel forest green
> color sel olive drab
> color sel dark turquoise
> color sel dodger blue
> color sel medium spring green
> color sel dark turquoise
> color sel turquoise
> color sel medium turquoise
> color sel turquoise
> color sel medium turquoise
> color sel light sea green
> color sel medium turquoise
> color sel light sea green
> color sel dark turquoise
> color sel medium turquoise
> color sel sea green
> color sel forest green
> color sel sea green
> color sel olive drab
> color sel sea green
> color sel forest green
> color sel sea green
> color sel lime green
> color sel olive drab
> color sel sea green
> color sel green
> color sel sea green
> color sel medium sea green
> color sel sea green
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> ui tool show "Color Actions"
> color sel medium sea green
> color sel dark olive green
> color sel dark cyan
> select clear
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> ui tool show "Color Actions"
> color sel teal
> color sel steel blue
> color sel cadet blue
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel yellow
> color sel byhetero
> select clear
> select ::name="MG"
3 atoms, 3 residues, 1 model selected
> color sel blue
> select clear
> set bgColor white
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting simple
[Repeated 1 time(s)]
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting full
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Fri May 12 16:33:39 2023 ———
opened ChimeraX session
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select clear
> select ::name="HOH"
676 atoms, 676 residues, 1 model selected
> hide sel atoms
> select clear
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> hide sel atoms
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> show sel atoms
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> hide sel atoms
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> show sel cartoons
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> show sel atoms
> select clear
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Mon May 15 10:30:42 2023 ———
opened ChimeraX session
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dark cyan
> color sel teal
> color sel light sea green
> color sel cadet blue
> color sel dodger blue
> color sel turquoise
> color sel dodger blue
> color sel turquoise
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel byhetero
> color sel yellow
> color sel byhetero
> select clear
> open
> "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Cavity/channel-
> probe1,3 - 3,1.mrc"
Opened channel-probe1,3 - 3,1.mrc as #2, grid size 32,48,32, pixel 0.5, shown
at level 1, step 1, values int8
> volume #2 level 0.07725
> transparency 10 surfaces
> transparency 50 surfaces
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Mon May 15 12:12:02 2023 ———
opened ChimeraX session
> open
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/channel-001.mrc
Opened channel-001.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level 1,
step 1, values int8
> volume #3 level 0.2083
> volume #3 level 0.08079
> volume #3 color gainsboro
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Wed May 17 12:30:08 2023 ———
opened ChimeraX session
> open
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/channel_ChainB.mrc
Opened channel_ChainB.mrc as #3, grid size 36,44,44, pixel 0.5, shown at level
1, step 1, values int8
> volume #3 level 0.08443
> volume #3 color gainsboro
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Wed May 17 16:50:35 2023 ———
opened ChimeraX session
> ui mousemode right zoom
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Thu May 18 13:09:59 2023 ———
opened ChimeraX session
> select /A
3410 atoms, 3498 bonds, 451 residues, 1 model selected
> color sel light sea green
> select clear
> select /B
3420 atoms, 3508 bonds, 453 residues, 1 model selected
> ui tool show "Color Actions"
> color sel yellow green
> color sel forest green
> color sel olive
> color sel green
> color sel blue
> color sel dark cyan
> color sel turquoise
> color sel dark turquoise
> color sel medium spring green
> color sel cornflower blue
> select clear
> select ::name="F5D"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel yellow
> color sel byhetero
> select clear
> ui mousemode right zoom
> save
> /Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Dimer.jpg
> width 1344 height 765 supersample 3
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Fri May 19 14:54:42 2023 ———
opened ChimeraX session
> ui mousemode right zoom
> ui mousemode right label
> label delete residues
> label #1/A:5
> label delete residues
> text N
Unknown command: text N
> 2dlabels N
> ui mousemode right translate
> ui mousemode right zoom
> 2dlabels N
> 2dlabels 'N'
Expected 'all' or a 2d label name or a label models specifier or a keyword
> 2dlabels text N
> ui mousemode right "move label"
> 2dlabels #4.1 xpos 0.372 ypos 0.956
> 2dlabels #4.1 xpos 0.365 ypos 0.958
> 2dlabels text N
> 2dlabels #4.2 xpos 0.534 ypos 0.955
> 2dlabels text C
> 2dlabels #4.3 xpos 0.277 ypos 0.776
> save "/Users/lorenzobasile/Desktop/Dottorato/STRUTTURE/MBO250/MBOx12/Figure
> Dimer.cxs"
——— End of log from Mon May 29 14:42:18 2023 ———
opened ChimeraX session
OpenGL version: 4.1 INTEL-18.8.6
OpenGL renderer: Intel(R) HD Graphics 6000
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir7,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 1,8 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 481.0.0.0.0
OS Loader Version: 540.120.3~22
SMC Version (system): 2.27f2
Software:
System Software Overview:
System Version: macOS 12.6.4 (21G526)
Kernel Version: Darwin 21.6.0
Time since boot: 28 days 3:28
Graphics/Displays:
Intel HD Graphics 6000:
Chipset Model: Intel HD Graphics 6000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1626
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: LCD
Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus)
UI Looks like: 1440 x 900
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
PLX2783H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: 1128270122622
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Analog VGA or Analog Over DVI-I
Adapter Firmware Version: 0,00
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.5
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.3
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.8
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.43.4
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202211090831
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.2
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.25.1
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.3
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.0.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.0.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.3
prompt-toolkit: 3.0.32
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.0
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.12
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.10.0
Change History (2)
comment:1 by , 13 months ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in registration dialog |
comment:2 by , 13 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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