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Opened 11 months ago
Closed 11 months ago
#16327 closed defect (can't reproduce)
Session tries to add same model twice
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | Greg Couch | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
warning | QWindowsWindow::setGeometry: Unable to set geometry 3848x2740-413+88 (frame: 3880x2828-429+16) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY1". Resulting geometry: 3847x2740-413+88 (frame: 3879x2828-429+16) margins: 16, 72, 16, 16 minimum size: 61x49 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=0, y=0), mintrack=POINT(x=185, y=211)))
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\Users\parv553\OneDrive - PNNL\Lab_work\Images\Krios-Screening-
> Images\2023\04-19-23-RCG-
> Tomograms\RCG_SIRT_CTF_Au_corrected_bin8\TS_A_02\Visualize_09-19_24\Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
> format session
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc as #3, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level -0.0406, step 1, values
float32
Unable to restore session, resetting.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\session.py", line 757, in restore
obj = sm.restore_snapshot(self, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 574, in restore_snapshot
m.set_state_from_snapshot(session, data)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 397, in set_state_from_snapshot
p.add([self])
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 314, in add
om.add(models, parent = self)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 756, in add
p = self._parent_for_added_model(model, parent, root_model = root_model)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 825, in _parent_for_added_model
raise ValueError('Tried to add model %s with the same id as another model %s'
ValueError: Tried to add model 12612 #1.1 with the same id as another model
12612 #1.1
Log from Mon Nov 18 14:49:58 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:\Users\parv553\OneDrive - PNNL\Lab_work\Images\Krios-Screening-
> Images\2023\04-19-23-RCG-
> Tomograms\RCG_SIRT_CTF_Au_corrected_bin8\TS_A_02\Visualize_09-19_24\Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
> format session
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc as #3, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level -0.0406, step 1, values
float32
Log from Wed Oct 30 14:52:59 2024 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp35_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp35_inv.mrc as #1, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.135, step 1, values
float32
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp19_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp19_inv.mrc as #2, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.18, step 1, values
float32
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc as #3, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.147, step 1, values
float32
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp30_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp30_inv.mrc as #4, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.14, step 1, values
float32
> surface dust #2 size 20
> surface dust #2 size 40
> volume #2 level 0.1
> volume #2 level 0.13
> surface dust #2 size 80
> surface dust #2 size 200
> surface dust #2 size 150
> volume #3 level -0.01513
> surface dust #3 size 150
> ui tool show "Segment Map"
> close #1
> close #2
> close #4
> set bgColor white
> lighting soft
> set bgColor gray
> volume showOutlineBox true
> volume region all imageMode "full region"
> volume unzone
> mousemode rightMode "crop volume"
> volume #3 style surface
> surface dust #3 size 150
> volume #3 region 24,0,0,199,199,179
> volume #3 region 41,0,0,199,199,179
> volume #3 region 41,0,0,134,199,179
> volume #3 region 41,0,0,134,190,179
> volume #3 region 41,0,66,134,190,179
> volume #3 region 41,0,66,145,190,179
> volume showOutlineBox false
> volume #3 change image level -0.705,0 level 0.1469,0.8 level 1.338,1
> volume #3 level -0.04061
> volume showOutlineBox true
> volume #3 region 41,0,53,145,190,179
> volume #3 region 41,0,53,145,190,136
> volume showOutlineBox false
Segmenting Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc, density
threshold -0.040606
Only showing 60 of 1028 regions.
Showing 60 of 1028 region surfaces
8789 watershed regions, grouped to 1028 regions
Showing Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.seg - 1028
regions, 60 surfaces
> select #1.51
1 model selected
> select #1.31
1 model selected
> select #1.59
1 model selected
> select add #1.31
2 models selected
> select add #1.36
3 models selected
> select add #1.38
4 models selected
> select add #1.53
5 models selected
> select add #1.48
6 models selected
> select add #1.22
7 models selected
> select add #1.43
8 models selected
> select add #1.42
9 models selected
> select add #1.47
10 models selected
> select add #1.39
11 models selected
Deleted 11 regions
> select add #1.51
1 model selected
> select add #1.54
2 models selected
> select add #1.24
3 models selected
> select add #1.50
4 models selected
> select add #1.17
5 models selected
> select add #1.40
6 models selected
> select add #1.23
7 models selected
> select add #1.57
8 models selected
> select add #1.49
9 models selected
> select add #1.33
10 models selected
> select add #1.37
11 models selected
> select add #1.27
12 models selected
Deleted 12 regions
> select add #1.46
1 model selected
> select add #1.32
2 models selected
> select add #1.25
3 models selected
> select add #1.26
4 models selected
> select add #1.19
5 models selected
Deleted 5 regions
> select add #1.45
1 model selected
Deleted 1 regions
> select #1.8
1 model selected
Segmenting Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc, density
threshold -0.040606
Only showing 90 of 1028 regions.
Showing 90 of 1028 region surfaces
8789 watershed regions, grouped to 1028 regions
Showing Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.seg - 1028
regions, 90 surfaces
Drag select of 11725, 7285 of 9148 triangles, 11439, 86 of 8036 triangles,
11778, 12275, 1713 of 7596 triangles, 12317, 4654 of 5804 triangles, 12318,
6383 of 6384 triangles, 11350, 2046 of 4368 triangles, 10128, 10213, 910 of
4696 triangles, 11403, 3717 of 5472 triangles, 12539, 11323, 8879, 11885,
11580, 10869, 12458, 1791 of 2344 triangles, 10699, 12366, 12420, 2696 of 3100
triangles, 12487, 12261, 12117, 11034
Deleted 24 regions
> select #1.59
1 model selected
> select #1.89
1 model selected
> select add #1.59
2 models selected
> select add #1.32
3 models selected
> select add #1.43
4 models selected
> select add #1.82
5 models selected
Deleted 5 regions
Drag select of 12018, 506 of 22424 triangles, 12307, 3067 of 24128 triangles,
11781, 7765 of 17392 triangles, 12536, 8543 of 14756 triangles, 12233, 11557,
12541, 10473, 10316, 782 of 5952 triangles, 11370, 2564 of 5824 triangles,
11641, 13 of 5552 triangles, 11361, 3412 of 3964 triangles, 10393, 12526, 4504
of 4660 triangles, 12038, 10383, 3848 of 4064 triangles, 10139, 1755 of 3784
triangles, 10159, 2319 of 3216 triangles, 12197, 12429, 4877 of 5028
triangles, 10419, 10282, 12209, 9086, 11723, 12380, 12333, 2877 of 3692
triangles, 12562, 266 of 3396 triangles, 11379, 12200, 12277
> select #1.41
1 model selected
> select #1.51
1 model selected
> select add #1.37
2 models selected
> select add #1.62
3 models selected
> select add #1.64
4 models selected
> select add #1.74
5 models selected
> select add #1.79
6 models selected
> select add #1.84
7 models selected
> select add #1.80
8 models selected
> select add #1.27
9 models selected
> select add #1.83
10 models selected
> select add #1.77
11 models selected
> select add #1.75
12 models selected
> select add #1.24
13 models selected
> select add #1.54
14 models selected
> select add #1.69
15 models selected
> select add #1.50
16 models selected
> select add #1.76
17 models selected
> select add #1.88
18 models selected
Deleted 18 regions
> select #1.90
1 model selected
> select add #1.85
2 models selected
> select add #1.60
3 models selected
> select subtract #1.60
2 models selected
> select add #1.65
3 models selected
Deleted 3 regions
> select #1.33
1 model selected
> select add #1.25
2 models selected
> select add #1.26
3 models selected
> select add #1.19
4 models selected
> select add #1.72
5 models selected
Deleted 5 regions
> select #1.49
1 model selected
> select #1.45
1 model selected
> select add #1.49
2 models selected
Deleted 2 regions
> select #1.46
1 model selected
Deleted 1 regions
> select #1.8
1 model selected
Ungrouped to 2 regions
> select clear
> select #1.55
1 model selected
> select add #1.34
2 models selected
> select add #1.58
3 models selected
> select add #1.60
4 models selected
> select add #1.56
5 models selected
> select add #1.30
6 models selected
> select add #1.29
7 models selected
> select clear
> select #1.29
1 model selected
Ungrouped to 3 regions
> select clear
> select #1.22
1 model selected
Deleted 1 regions
> select #1.8
1 model selected
> select #1.23
1 model selected
> select add #1.8
2 models selected
Ungrouped to 21 regions
Grouped 21 regions
> select #1.8
1 model selected
Deleted 1 regions
> select add #1.22
1 model selected
> select add #1.30
2 models selected
> select add #1.60
3 models selected
> select add #1.56
4 models selected
> select add #1.58
5 models selected
> select add #1.55
6 models selected
> select add #1.61
7 models selected
Drag select of 12018, 43 of 22424 triangles, 12493, 653 of 20372 triangles,
11784, 88 of 17492 triangles, 12494, 82 of 9476 triangles, 10383, 7 of 4064
triangles, 10142, 81 of 2688 triangles
> select clear
> select add #1.58
1 model selected
> select clear
> select #1.61
1 model selected
Deleted 1 regions
> select #1.55
1 model selected
> select add #1.58
2 models selected
> select add #1.60
3 models selected
> select add #1.30
4 models selected
> select add #1.22
5 models selected
> select add #1.56
6 models selected
> select add #1.17
7 models selected
> select add #1.41
8 models selected
Grouped 8 regions
> select clear
Drag select of 12308, 12018, 12307, 12493, 12016, 11784, 11781, 11365, 12047,
12492, 12494, 12015, 10721, 12490, 12017, 12337, 10030, 10149, 11981, 10415,
10003, 10115, 10810, 11483, 12610
> select subtract #1.8
24 models selected
Grouped 24 regions
> select clear
> save "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
> select #1.8
1 model selected
> color #1 #55ffffff
> color #1 #78ff30ff
> select add #1
3 models selected
> color #1 #46ffd1ff
> undo
> redo
> undo
[Repeated 3 time(s)]
> ui tool show "Color Actions"
QWindowsWindow::setGeometry: Unable to set geometry 633x1298+2085+930 (frame:
665x1386+2069+858) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 617x1249+2093+971 (frame:
649x1337+2077+899) margins: 16, 72, 16, 16 minimum size: 253x519 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1310750, y=1310806), mintrack=POINT(x=665, y=1386)))
> color sel cyan
> select #1.1
1 model selected
> color sel yellow
No visible atoms or bonds selected
> select #1.1
1 model selected
No visible atoms or bonds selected
[Repeated 11 time(s)]
> select subtract #1
Nothing selected
> select add #1
3 models selected
> select subtract #1
Nothing selected
> select add #1
3 models selected
> select clear
> select #1.1
1 model selected
> color sel lime target s
> color sel yellow target s
No visible atoms or bonds selected
> color sel light yellow target s
> color sel light goldenrod yellow target s
> color sel khaki target s
> color sel tan target s
> color sel gold target s
> color sel yellow target s
> ui tool show "Surface Color"
> color #1 #55ffe5ff
> color #1 #47fff0ff
> undo
[Repeated 1 time(s)]
> select clear
> select #1.8
1 model selected
> color #1 #5afff4ff
> select add #1
3 models selected
> select subtract #1
Nothing selected
> select add #1
3 models selected
> undo
[Repeated 3 time(s)]
> select clear
> save "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
——— End of log from Wed Oct 30 14:52:59 2024 ———
opened ChimeraX session
Showing Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.seg - 940
regions, 2 surfaces
> surface dust #1.2 size 150
> surface dust #1.1 size 150
> select #1.1
1 model selected
Ungrouped to 8 regions
> select clear
> select #1.2
1 model selected
> select add #1.7
2 models selected
Grouped 2 regions
> color #1.1 #bcc509ff
> color #1.1 #c5b500ff
> color #1.1 yellow
> color #1.1 #ffff7fff
> select clear
> select #1.10
1 model selected
> select add #1.3
2 models selected
> select add #1.4
3 models selected
> select add #1.9
4 models selected
> select add #1.8
5 models selected
Grouped 5 regions
> select add #1.5
2 models selected
> select add #1.6
3 models selected
Grouped 3 regions
> color #1.2 cyan
> surface dust #1.1 size 150
> surface dust #1.2 size 150
> select clear
> view orient
> save C:\Users\parv553/Desktop\image74.png supersample 3
> save C:\Users\parv553/Desktop\image75.png supersample 3
> save C:\Users\parv553/Desktop\image76.png supersample 3
> hide #1.2 models
> show #1.2 models
> hide #1.1 models
> save C:\Users\parv553/Desktop\image77.png supersample 3
> save C:\Users\parv553/Desktop\image78.png supersample 3
> show #!3 models
> hide #!3 models
> show #1.1 models
> save "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
——— End of log from Mon Nov 18 14:49:58 2024 ———
opened ChimeraX session
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc as #3, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level -0.0406, step 1, values
float32
Unable to restore session, resetting.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\session.py", line 757, in restore
obj = sm.restore_snapshot(self, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 574, in restore_snapshot
m.set_state_from_snapshot(session, data)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 397, in set_state_from_snapshot
p.add([self])
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 314, in add
om.add(models, parent = self)
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 756, in add
p = self._parent_for_added_model(model, parent, root_model = root_model)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\models.py", line 825, in _parent_for_added_model
raise ValueError('Tried to add model %s with the same id as another model %s'
ValueError: Tried to add model 12612 #1.1 with the same id as another model
12612 #1.1
Log from Mon Nov 18 14:49:58 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:\Users\parv553\OneDrive - PNNL\Lab_work\Images\Krios-Screening-
> Images\2023\04-19-23-RCG-
> Tomograms\RCG_SIRT_CTF_Au_corrected_bin8\TS_A_02\Visualize_09-19_24\Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
> format session
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc as #3, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level -0.0406, step 1, values
float32
Log from Wed Oct 30 14:52:59 2024 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp35_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp35_inv.mrc as #1, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.135, step 1, values
float32
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp19_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp19_inv.mrc as #2, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.18, step 1, values
float32
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc as #3, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.147, step 1, values
float32
> open "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp30_inv.mrc"
Opened Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp30_inv.mrc as #4, grid
size 200,200,180, pixel 8.9,8.9,8.9, shown at level 0.14, step 1, values
float32
> surface dust #2 size 20
> surface dust #2 size 40
> volume #2 level 0.1
> volume #2 level 0.13
> surface dust #2 size 80
> surface dust #2 size 200
> surface dust #2 size 150
> volume #3 level -0.01513
> surface dust #3 size 150
> ui tool show "Segment Map"
> close #1
> close #2
> close #4
> set bgColor white
> lighting soft
> set bgColor gray
> volume showOutlineBox true
> volume region all imageMode "full region"
> volume unzone
> mousemode rightMode "crop volume"
> volume #3 style surface
> surface dust #3 size 150
> volume #3 region 24,0,0,199,199,179
> volume #3 region 41,0,0,199,199,179
> volume #3 region 41,0,0,134,199,179
> volume #3 region 41,0,0,134,190,179
> volume #3 region 41,0,66,134,190,179
> volume #3 region 41,0,66,145,190,179
> volume showOutlineBox false
> volume #3 change image level -0.705,0 level 0.1469,0.8 level 1.338,1
> volume #3 level -0.04061
> volume showOutlineBox true
> volume #3 region 41,0,53,145,190,179
> volume #3 region 41,0,53,145,190,136
> volume showOutlineBox false
Segmenting Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc, density
threshold -0.040606
Only showing 60 of 1028 regions.
Showing 60 of 1028 region surfaces
8789 watershed regions, grouped to 1028 regions
Showing Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.seg - 1028
regions, 60 surfaces
> select #1.51
1 model selected
> select #1.31
1 model selected
> select #1.59
1 model selected
> select add #1.31
2 models selected
> select add #1.36
3 models selected
> select add #1.38
4 models selected
> select add #1.53
5 models selected
> select add #1.48
6 models selected
> select add #1.22
7 models selected
> select add #1.43
8 models selected
> select add #1.42
9 models selected
> select add #1.47
10 models selected
> select add #1.39
11 models selected
Deleted 11 regions
> select add #1.51
1 model selected
> select add #1.54
2 models selected
> select add #1.24
3 models selected
> select add #1.50
4 models selected
> select add #1.17
5 models selected
> select add #1.40
6 models selected
> select add #1.23
7 models selected
> select add #1.57
8 models selected
> select add #1.49
9 models selected
> select add #1.33
10 models selected
> select add #1.37
11 models selected
> select add #1.27
12 models selected
Deleted 12 regions
> select add #1.46
1 model selected
> select add #1.32
2 models selected
> select add #1.25
3 models selected
> select add #1.26
4 models selected
> select add #1.19
5 models selected
Deleted 5 regions
> select add #1.45
1 model selected
Deleted 1 regions
> select #1.8
1 model selected
Segmenting Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.mrc, density
threshold -0.040606
Only showing 90 of 1028 regions.
Showing 90 of 1028 region surfaces
8789 watershed regions, grouped to 1028 regions
Showing Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.seg - 1028
regions, 90 surfaces
Drag select of 11725, 7285 of 9148 triangles, 11439, 86 of 8036 triangles,
11778, 12275, 1713 of 7596 triangles, 12317, 4654 of 5804 triangles, 12318,
6383 of 6384 triangles, 11350, 2046 of 4368 triangles, 10128, 10213, 910 of
4696 triangles, 11403, 3717 of 5472 triangles, 12539, 11323, 8879, 11885,
11580, 10869, 12458, 1791 of 2344 triangles, 10699, 12366, 12420, 2696 of 3100
triangles, 12487, 12261, 12117, 11034
Deleted 24 regions
> select #1.59
1 model selected
> select #1.89
1 model selected
> select add #1.59
2 models selected
> select add #1.32
3 models selected
> select add #1.43
4 models selected
> select add #1.82
5 models selected
Deleted 5 regions
Drag select of 12018, 506 of 22424 triangles, 12307, 3067 of 24128 triangles,
11781, 7765 of 17392 triangles, 12536, 8543 of 14756 triangles, 12233, 11557,
12541, 10473, 10316, 782 of 5952 triangles, 11370, 2564 of 5824 triangles,
11641, 13 of 5552 triangles, 11361, 3412 of 3964 triangles, 10393, 12526, 4504
of 4660 triangles, 12038, 10383, 3848 of 4064 triangles, 10139, 1755 of 3784
triangles, 10159, 2319 of 3216 triangles, 12197, 12429, 4877 of 5028
triangles, 10419, 10282, 12209, 9086, 11723, 12380, 12333, 2877 of 3692
triangles, 12562, 266 of 3396 triangles, 11379, 12200, 12277
> select #1.41
1 model selected
> select #1.51
1 model selected
> select add #1.37
2 models selected
> select add #1.62
3 models selected
> select add #1.64
4 models selected
> select add #1.74
5 models selected
> select add #1.79
6 models selected
> select add #1.84
7 models selected
> select add #1.80
8 models selected
> select add #1.27
9 models selected
> select add #1.83
10 models selected
> select add #1.77
11 models selected
> select add #1.75
12 models selected
> select add #1.24
13 models selected
> select add #1.54
14 models selected
> select add #1.69
15 models selected
> select add #1.50
16 models selected
> select add #1.76
17 models selected
> select add #1.88
18 models selected
Deleted 18 regions
> select #1.90
1 model selected
> select add #1.85
2 models selected
> select add #1.60
3 models selected
> select subtract #1.60
2 models selected
> select add #1.65
3 models selected
Deleted 3 regions
> select #1.33
1 model selected
> select add #1.25
2 models selected
> select add #1.26
3 models selected
> select add #1.19
4 models selected
> select add #1.72
5 models selected
Deleted 5 regions
> select #1.49
1 model selected
> select #1.45
1 model selected
> select add #1.49
2 models selected
Deleted 2 regions
> select #1.46
1 model selected
Deleted 1 regions
> select #1.8
1 model selected
Ungrouped to 2 regions
> select clear
> select #1.55
1 model selected
> select add #1.34
2 models selected
> select add #1.58
3 models selected
> select add #1.60
4 models selected
> select add #1.56
5 models selected
> select add #1.30
6 models selected
> select add #1.29
7 models selected
> select clear
> select #1.29
1 model selected
Ungrouped to 3 regions
> select clear
> select #1.22
1 model selected
Deleted 1 regions
> select #1.8
1 model selected
> select #1.23
1 model selected
> select add #1.8
2 models selected
Ungrouped to 21 regions
Grouped 21 regions
> select #1.8
1 model selected
Deleted 1 regions
> select add #1.22
1 model selected
> select add #1.30
2 models selected
> select add #1.60
3 models selected
> select add #1.56
4 models selected
> select add #1.58
5 models selected
> select add #1.55
6 models selected
> select add #1.61
7 models selected
Drag select of 12018, 43 of 22424 triangles, 12493, 653 of 20372 triangles,
11784, 88 of 17492 triangles, 12494, 82 of 9476 triangles, 10383, 7 of 4064
triangles, 10142, 81 of 2688 triangles
> select clear
> select add #1.58
1 model selected
> select clear
> select #1.61
1 model selected
Deleted 1 regions
> select #1.55
1 model selected
> select add #1.58
2 models selected
> select add #1.60
3 models selected
> select add #1.30
4 models selected
> select add #1.22
5 models selected
> select add #1.56
6 models selected
> select add #1.17
7 models selected
> select add #1.41
8 models selected
Grouped 8 regions
> select clear
Drag select of 12308, 12018, 12307, 12493, 12016, 11784, 11781, 11365, 12047,
12492, 12494, 12015, 10721, 12490, 12017, 12337, 10030, 10149, 11981, 10415,
10003, 10115, 10810, 11483, 12610
> select subtract #1.8
24 models selected
Grouped 24 regions
> select clear
> save "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
> select #1.8
1 model selected
> color #1 #55ffffff
> color #1 #78ff30ff
> select add #1
3 models selected
> color #1 #46ffd1ff
> undo
> redo
> undo
[Repeated 3 time(s)]
> ui tool show "Color Actions"
QWindowsWindow::setGeometry: Unable to set geometry 633x1298+2085+930 (frame:
665x1386+2069+858) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 617x1249+2093+971 (frame:
649x1337+2077+899) margins: 16, 72, 16, 16 minimum size: 253x519 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1310750, y=1310806), mintrack=POINT(x=665, y=1386)))
> color sel cyan
> select #1.1
1 model selected
> color sel yellow
No visible atoms or bonds selected
> select #1.1
1 model selected
No visible atoms or bonds selected
[Repeated 11 time(s)]
> select subtract #1
Nothing selected
> select add #1
3 models selected
> select subtract #1
Nothing selected
> select add #1
3 models selected
> select clear
> select #1.1
1 model selected
> color sel lime target s
> color sel yellow target s
No visible atoms or bonds selected
> color sel light yellow target s
> color sel light goldenrod yellow target s
> color sel khaki target s
> color sel tan target s
> color sel gold target s
> color sel yellow target s
> ui tool show "Surface Color"
> color #1 #55ffe5ff
> color #1 #47fff0ff
> undo
[Repeated 1 time(s)]
> select clear
> select #1.8
1 model selected
> color #1 #5afff4ff
> select add #1
3 models selected
> select subtract #1
Nothing selected
> select add #1
3 models selected
> undo
[Repeated 3 time(s)]
> select clear
> save "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
——— End of log from Wed Oct 30 14:52:59 2024 ———
opened ChimeraX session
Showing Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.seg - 940
regions, 2 surfaces
> surface dust #1.2 size 150
> surface dust #1.1 size 150
> select #1.1
1 model selected
Ungrouped to 8 regions
> select clear
> select #1.2
1 model selected
> select add #1.7
2 models selected
Grouped 2 regions
> color #1.1 #bcc509ff
> color #1.1 #c5b500ff
> color #1.1 yellow
> color #1.1 #ffff7fff
> select clear
> select #1.10
1 model selected
> select add #1.3
2 models selected
> select add #1.4
3 models selected
> select add #1.9
4 models selected
> select add #1.8
5 models selected
Grouped 5 regions
> select add #1.5
2 models selected
> select add #1.6
3 models selected
Grouped 3 regions
> color #1.2 cyan
> surface dust #1.1 size 150
> surface dust #1.2 size 150
> select clear
> view orient
> save C:\Users\parv553/Desktop\image74.png supersample 3
> save C:\Users\parv553/Desktop\image75.png supersample 3
> save C:\Users\parv553/Desktop\image76.png supersample 3
> hide #1.2 models
> show #1.2 models
> hide #1.1 models
> save C:\Users\parv553/Desktop\image77.png supersample 3
> save C:\Users\parv553/Desktop\image78.png supersample 3
> show #!3 models
> hide #!3 models
> show #1.1 models
> save "C:/Users/parv553/OneDrive - PNNL/Lab_work/Images/Krios-Screening-
> Images/2023/04-19-23-RCG-
> Tomograms/RCG_SIRT_CTF_Au_corrected_bin8/TS_A_02/Visualize_09-19_24/Clip1_1_1_RCG_TS_A_02_rec_CTF_bin8_corrected_lp25_inv.cxs"
——— End of log from Mon Nov 18 14:49:58 2024 ———
opened ChimeraX session
QWindowsWindow::setGeometry: Unable to set geometry 1500x1188+1650+985 (frame:
1532x1276+1634+913) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 1484x1139+1658+1026 (frame:
1516x1227+1642+954) margins: 16, 72, 16, 16 minimum size: 600x321 maximum
size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0,
y=0), maxtrack=POINT(x=1310750, y=1310806), mintrack=POINT(x=1532, y=891)))
OpenGL version: 3.3.0 NVIDIA 528.79
OpenGL renderer: NVIDIA RTX A2000 8GB Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows
Manufacturer: Dell Inc.
Model: Precision 5570
OS: Microsoft Windows 10 Enterprise (Build 19045)
Memory: 68,374,552,576
MaxProcessMemory: 137,438,953,344
CPU: 20 12th Gen Intel(R) Core(TM) i9-12900H
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2024.6.2
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.1
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 24.1
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pywin32: 306
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
WMI: 1.5.1
Change History (2)
comment:1 by , 11 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Sessions |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Session tries to add same model twice |
comment:2 by , 11 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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They are using Segger and opened some .seg segmentations from Segger. Probably the Segger code does something wrong that created these illegal session files with two models with the same id. Without a session or example I won't be able to debug it.