![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Oct 8, 2024:
- 11:20 PM Ticket #16093 (AddCharge: Hydrogen bonded to atom that should not have hydrogens) created by
- […]
- 9:19 PM Ticket #16092 (SEQCROW: self.start_time is None) created by
- […]
- 7:29 PM Ticket #15825 (Add a PDB and AlphaFold database sequence search using RCSB mmseqs2) closed by
- fixed: Done. Added as part of the new Similar Structures tool, and the new …
- 7:11 PM Ticket #16091 (Crash in QWebEngine after alphafold predict) created by
- […]
- 6:37 PM Ticket #16090 (Crash on Mac waking from sleep) created by
- […]
- 6:34 PM Ticket #16089 (Movie recording: No space left on device) created by
- […]
- 6:02 PM Ticket #16088 (Fetch model archive structures and plot PAE values) closed by
- fixed: Done. I added the code to ChimeraX changing it in a few small ways. …
- 5:51 PM Ticket #16088 (Fetch model archive structures and plot PAE values) created by
- Gerardo contributed code to fetch Model Archive structures and plot …
- 12:37 PM Ticket #16087 (PAE value reported by mouse hover is wrong) closed by
- fixed: Fixed. Swapped row and column in reporting PAE value on mouse hover.
- 12:32 PM Ticket #16087 (PAE value reported by mouse hover is wrong) created by
- […]
- 11:46 AM Dev2024-10-14 created by
- 11:45 AM 2024-10-10 created by
- 11:44 AM 2024-10-3 edited by
- (diff)
- 11:43 AM DeveloperMeetings edited by
- (diff)
- 11:09 AM Ticket #16086 (glBufferData: out of memory) created by
- […]
- 11:06 AM Ticket #16085 (Crash in garbage collection) created by
- […]
- 9:35 AM Ticket #16084 (Crash in event loop) closed by
- can't reproduce
- 2:36 AM Ticket #16084 (Crash in event loop) created by
- […]
Oct 7, 2024:
- 8:55 PM Ticket #16083 (Crash on Mac unplugging external display) closed by
- fixed: As described in the previous 2 comments it appears this crash has been …
- 8:54 PM Ticket #15982 (Crash disconnecting hdmi projector, Mac, Qt 6.7.2) closed by
- can't reproduce: Further attempts to reproduce this crash in ticket #16083 failed. The …
- 5:51 PM Ticket #16083 (Crash on Mac unplugging external display) created by
- […]
- 5:49 PM Ticket #16081 (kvfinder error with multiple structures) closed by
- fixed
- 4:12 PM Dev2024-10-7 edited by
- (diff)
- 4:11 PM Dev2024-10-7 edited by
- (diff)
- 3:56 PM Dev2024-10-7 edited by
- (diff)
- 3:09 PM Dev2024-10-7 edited by
- (diff)
- 2:46 PM Ticket #16082 (Driver crash creating dozen of alignments) closed by
- can't reproduce: It's not that easy to accidentally open dozens of alignments anymore.
- 2:44 PM Ticket #16082 (Driver crash creating dozen of alignments) created by
- […]
- 2:41 PM Ticket #16079 (Crash on Mac waking from sleep) closed by
- duplicate: This crash is caused by a bug in the Mac Qt window toolkit used by …
- 2:41 PM Ticket #16081 (kvfinder error with multiple structures) created by
- […]
- 2:30 PM Ticket #16074 (Add command to measure molecular weight of specified molecules) closed by
- fixed: Added "measure weight" command, takes atom specifier and reports the …
- 2:27 PM Ticket #16051 (MolecularDynamicsViewer) closed by
- fixed
- 2:19 PM Ticket #16080 (SEQCROW: substitute: residue names must be 4 characters or less) created by
- […]
- 2:15 PM Ticket #16077 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties.
- 2:11 PM Ticket #16079 (Crash on Mac waking from sleep) created by
- […]
- 2:10 PM Ticket #16078 (toolshed install: Non-existent wheel file) created by
- […]
- 2:02 PM Ticket #16077 (Crash on Mac waking from sleep) created by
- […]
- 2:01 PM Ticket #16023 (ChimeraX download problem) closed by
- nonchimerax: Due to database problems, this comment from Sophie did not make it …
- 1:59 PM Ticket #16076 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by
- duplicate
- 1:55 PM Ticket #16076 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by
- […]
- 1:55 PM Ticket #16075 (QWebEngine crash) closed by
- can't reproduce: Due to database problems, the previous comments showing up on this …
- 1:49 PM Ticket #16075 (QWebEngine crash) created by
- […]
- 12:07 PM Ticket #16074 (Add command to measure molecular weight of specified molecules) created by
- Jan asked for a command to measure the molecular weight of a specified …
- 12:05 PM Ticket #16071 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties adding …
- 11:58 AM Ticket #16073 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Oct 5, 2024:
Oct 4, 2024:
- 4:15 PM ChangeLog edited by
- (diff)
- 10:48 AM Ticket #16071 (Crash on Mac waking from sleep) created by
- […]
Oct 3, 2024:
- 6:08 PM Ticket #16070 (SEQCROW: read Gaussian: 'NoneType' object has no attribute 'group') created by
- […]
- 4:58 PM Ticket #15804 (Log cannot restore session state) closed by
- fixed: Added code to protect against empty log file contents.
- 4:25 PM Ticket #2689 (Add bundle_info.xml tag for documentation file locations) closed by
- fixed: The documentation update is the fix. The files need to be installed …
- 4:19 PM Ticket #15971 (nuc slab positions miscalculated?) closed by
- fixed: Fixed. Use alternate implementation of Plane class.
- 3:20 PM Ticket #16069 (Crash moving window between screens) created by
- […]
- 2:15 PM 2024-10-3 edited by
- (diff)
- 1:22 PM Ticket #16065 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt crash in displayConfigFinalizedProc.
- 1:21 PM Ticket #16057 (Crash on Mac waking from sleep after screen disconnected) closed by
- duplicate: Mac Qt crash in _NSViewHierarchyDidChangeBackingProperties.
- 1:15 PM Ticket #16068 (Crash involving morph) reopened by
- Conferring with Tom Goddard, we can produce a crash -- so re-opening.
- 1:08 PM Ticket #16068 (Crash involving morph) closed by
- duplicate: Works in ChimeraX daily build. I think the crash is because of the …
- 10:31 AM Ticket #16067 (Crash involving morph) closed by
- duplicate: More info provided by #16068
- 9:00 AM Ticket #16066 (reading AlphaFold JSON as MOLE: KeyError: 'Channels') closed by
- duplicate
- 8:56 AM Ticket #16064 (ViewDockX: JavaScriptConsoleMessageLevel.WarningMessageLevel) closed by
- can't reproduce: Want to rewrite entirely anyway.
- 8:54 AM Ticket #16063 (Test) closed by
- not a bug
- 8:52 AM Ticket #16060 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 8:51 AM Ticket #16059 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 8:50 AM Ticket #16058 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate: Hi Elena, Thanks for reporting this problem. It has been fixed, and …
- 8:47 AM Ticket #15980 (Render by Attribute: 'MarkedHistogram' object has no attribute '_min_val') closed by
- fixed
- 5:46 AM Ticket #16068 (Crash involving morph) created by
- […] F roTq both delB hideHOH selRes.cxs
- 5:29 AM Ticket #16067 (Crash involving morph) created by
- […]
- 4:47 AM Ticket #16066 (reading AlphaFold JSON as MOLE: KeyError: 'Channels') created by
- […]
- 3:34 AM Ticket #16065 (Crash on Mac waking from sleep) created by
- […]
Oct 2, 2024:
- 6:23 PM Ticket #16064 (ViewDockX: JavaScriptConsoleMessageLevel.WarningMessageLevel) created by
- […]
- 5:37 PM Ticket #16063 (Test) created by
- […]
- 2:23 PM Ticket #15811 (Session save: No bundle information for chimerax.core.tasks.Tasks) closed by
- fixed: I just tried saving a session in my developer build and it worked …
- 2:21 PM Ticket #16062 (ChimeraX bug report submission) created by
- […]
- 11:18 AM Ticket #16061 (Support chains in "color byattribute") created by
- Per summary. Still seems iffy adding chains to the tool interface, …
- 11:09 AM Ticket #16060 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 11:09 AM Ticket #16059 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 11:09 AM Ticket #16058 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 10:42 AM Ticket #16055 (Crash moving window between screens) closed by
- duplicate: Qt crash in _NSViewHierarchyDidChangeBackingProperties.
- 10:08 AM Ticket #16057 (Crash on Mac waking from sleep after screen disconnected) created by
- […]
- 10:01 AM Ticket #16056 (Crash moving window between screens) created by
- […]
- 9:42 AM Ticket #16055 (Crash moving window between screens) created by
- […]
- 12:33 AM Ticket #16054 (mmcif.get_cif_tables() raises TypeError if table does not exist) closed by
- fixed: Fixed code and function documentation.
- 12:06 AM Ticket #16053 (Opening mmCIF file spams log with URLS to each non-standard chemical ...) closed by
- fixed: Removed debugging print.
Oct 1, 2024:
- 7:24 PM Ticket #16054 (mmcif.get_cif_tables() raises TypeError if table does not exist) created by
- […]
- 7:20 PM Ticket #16053 (Opening mmCIF file spams log with URLS to each non-standard chemical ...) created by
- […]
- 11:21 AM Ticket #16048 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt crash in displayConfigFinalizedProc probably connecting or …
- 11:12 AM Dev2024-10-7 created by
- 11:11 AM DeveloperMeetings edited by
- (diff)
- 9:38 AM Ticket #16052 (Weird graphics) created by
- […] 3.png
- 9:15 AM Ticket #16051 (MolecularDynamicsViewer) created by
- […]
- 8:38 AM Ticket #16050 (no OpenCL or compatible CUDA drivers) created by
- […]
- 8:33 AM Ticket #16049 (Could not make graphics context current) created by
- […]
- 1:13 AM Ticket #16048 (Crash on Mac waking from sleep) created by
- […]
Sep 30, 2024:
- 9:38 PM Ticket #16027 (alphafold match failure with UniProt ID) closed by
- fixed: Fixed. If you are not connected to the internet and you try to lookup …
- 7:18 PM Ticket #16047 (GLTF output gets wrong color for instanced ribbons) closed by
- fixed: Fixed. When GLTF output was saved with no instancing the copies of …
- 6:08 PM Ticket #16034 (GLTF: Cannot center nodes because a node has both a mesh and children) closed by
- fixed: Fixed. Code now allows output GLTF with nodes centered when a …
- 6:01 PM Ticket #16047 (GLTF output gets wrong color for instanced ribbons) created by
- […]
- 5:00 PM Ticket #16030 (Could not make graphics context current after various Qt context errors) closed by
- duplicate: Duplicate of #16028
- 4:59 PM Ticket #16028 (Crash in swap_buffers after various Qt context problems) closed by
- can't reproduce: OpenGL not functioning. Possible remote display problem.
- 4:31 PM Dev2024-9-30 edited by
- (diff)
- 4:31 PM 2024-10-3 created by
- 4:29 PM Dev2024-9-30 edited by
- (diff)
- 4:15 PM Dev2024-9-30 edited by
- (diff)
- 4:10 PM Dev2024-9-30 created by
- 4:09 PM DeveloperMeetings edited by
- (diff)
- 2:19 PM Ticket #16043 (Inadequate OpenGL: Could not make opengl context current) closed by
- limitation: User's OpenGL driver only offered version 3.0.
- 2:18 PM Ticket #16046 (OpenCommands script crashes ChimeraX) created by
- […]
- 2:18 PM Ticket #16039 (glClear: invalid framebuffer operation) closed by
- can't reproduce: I don't see what could be causing glClear() to fail when drawing the …
- 2:09 PM Ticket #16038 (Crash on Mac waking from sleep) closed by
- duplicate: Qt crash in displayConfigFinalizedProc connecting or disconnecting an …
- 2:06 PM Ticket #16033 ("cartoon style modeStrand plank": NameError: name 'ribbons_drawing' is ...) closed by
- not a bug: Not sure how the reporter found the "modeStrand" option of the cartoon …
- 1:54 PM Ticket #10270 (need way to set full sequence of a chain) closed by
- fixed: The "sequence update" command, added on Jun 13th, does the second part …
- 12:39 PM ChangeLog edited by
- (diff)
- 12:00 PM Dev2024-9-23 edited by
- (diff)
- 11:48 AM Dev2024-9-23 edited by
- (diff)
- 11:43 AM Ticket #16045 (Crash in swap_buffers) closed by
- can't reproduce: version 1.3
- 11:23 AM Ticket #16042 (Crash in garbage collection) closed by
- duplicate
- 11:07 AM Ticket #16045 (Crash in swap_buffers) created by
- […]
- 10:55 AM Ticket #16037 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce
- 10:54 AM Ticket #16036 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:43 AM Ticket #16044 (Unknown crash) created by
- […]
- 9:54 AM Ticket #16043 (Inadequate OpenGL: Could not make opengl context current) created by
- […]
- 5:43 AM Ticket #16042 (Crash in garbage collection) created by
- […]
Sep 29, 2024:
- 8:20 PM Ticket #16041 ("close #": v.session is None) created by
- […]
- 7:41 PM Ticket #16040 (SEQCROW 2D Builder: urlopen error [Errno 11001] getaddrinfo failed) created by
- […]
- 6:23 PM Ticket #16039 (glClear: invalid framebuffer operation) created by
- […]
- 11:17 AM Ticket #16038 (Crash on Mac waking from sleep) created by
- […]
Sep 28, 2024:
Sep 27, 2024:
- 4:26 PM Ticket #16036 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:05 PM Ticket #16035 (Schol-AR gives "no session file found") created by
- […] Screenshot 2024-09-24 at 3.58.05 PM.png
- 1:40 PM Ticket #16034 (GLTF: Cannot center nodes because a node has both a mesh and children) created by
- As we discussed yesterday, I updated the NIH3D Workflows to …
- 12:52 PM Ticket #16033 ("cartoon style modeStrand plank": NameError: name 'ribbons_drawing' is ...) created by
- […]
- 11:55 AM Ticket #16032 (Crash opening large number of models) closed by
- can't reproduce: Yeah, I was able to open those 2000+ files without any issue on my Mac …
- 11:40 AM Ticket #16031 (Crash running modal dialog) closed by
- can't reproduce
- 11:36 AM Ticket #16029 (Crash while deleting atoms) closed by
- can't reproduce
- 6:03 AM Ticket #16032 (Crash opening large number of models) created by
- […]
- 3:23 AM Ticket #16031 (Crash running modal dialog) created by
- […]
Sep 26, 2024:
- 8:49 PM Ticket #16030 (Could not make graphics context current after various Qt context errors) created by
- […]
- 8:09 PM Ticket #16029 (Crash while deleting atoms) created by
- […]
- 7:43 PM Ticket #16028 (Crash in swap_buffers after various Qt context problems) created by
- […]
- 2:26 PM NIAID2024 edited by
- (diff)
- 2:23 PM NIAID2024 edited by
- (diff)
- 2:21 PM NIAID2024 edited by
- (diff)
- 1:56 PM Ticket #16027 (alphafold match failure with UniProt ID) created by
- […]
- 1:56 PM NIAID2024 edited by
- (diff)
- 1:54 PM NIAID2024 edited by
- (diff)
- 1:03 PM Ticket #16020 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt window toolkit crash in …
- 1:01 PM Ticket #16021 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt window toolkit crashed in …
- 12:58 PM Ticket #16025 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple's Intel Mac graphics driver crashed running ChimeraX. …
- 11:48 AM Dev2024-9-23 edited by
- (diff)
- 10:28 AM Ticket #16024 (Bad interaction of colors with "Background" target) closed by
- duplicate
- 10:26 AM Ticket #16022 (Bad interaction of colors with "Background" target) closed by
- duplicate: Hi Kelly, Thanks for reporting this problem. It was fixed about two …
- 7:57 AM Ticket #16026 (Problems in opening Chimera X 1.8) created by
- […]
- 1:55 AM Ticket #16025 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) created by
- […]
Sep 25, 2024:
- 11:02 PM Ticket #16024 (Bad interaction of colors with "Background" target) created by
- […]
- 6:12 PM Ticket #16023 (ChimeraX download problem) created by
- Hi, I've been trying to download ChimeraX on my personal computer …
- 4:51 PM Ticket #16022 (Bad interaction of colors with "Background" target) created by
- […]
- 3:09 PM Ticket #16019 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt in _NSViewHierarchyDidChangeBackingProperties probably …
- 3:07 PM Ticket #16017 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt in _NSViewHierarchyDidChangeBackingProperties probably …
- 2:29 PM Ticket #16021 (Crash on Mac waking from sleep) created by
- […]
- 10:40 AM Ticket #16020 (Crash on Mac waking from sleep) created by
- […]
- 10:23 AM Ticket #16013 (MOLE JSON treated as AlphaFold) closed by
- not a bug: Sorry about that change. AlphaFold PAE json files are much more …
- 9:05 AM Ticket #16016 (Crash in event loop) closed by
- can't reproduce
- 9:04 AM Ticket #16015 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:03 AM Ticket #16014 (Crash in garbage collection) closed by
- duplicate
- 8:52 AM NIAID2024 edited by
- (diff)
- 7:33 AM Ticket #16019 (Crash on Mac waking from sleep) created by
- […]
- 6:56 AM Ticket #16018 (ChimeraX does not start) created by
- […]
- 2:44 AM Ticket #16017 (Crash on Mac waking from sleep) created by
- […]
- 12:13 AM Ticket #16016 (Crash in event loop) created by
- […]
Sep 24, 2024:
- 6:54 PM Ticket #16015 (MemoryError opening mmCIF files) created by
- […]
- 5:53 PM Ticket #16014 (Crash in garbage collection) created by
- […]
- 4:55 PM WikiStart edited by
- (diff)
- 4:54 PM StartDaily edited by
- (diff)
- 4:53 PM StartDaily edited by
- (diff)
- 4:51 PM Ticket #16013 (MOLE JSON treated as AlphaFold) created by
- […]
- 4:00 PM Ticket #16012 (ChimeraX bug report submission) created by
- […] Screenshot 2024-09-24 at 3.58.05 PM.png
- 3:58 PM Ticket #16009 (Qt fatal error: Failed to initialize graphics backend for OpenG) closed by
- can't reproduce
- 3:57 PM Ticket #16008 (test) closed by
- not a bug
- 3:55 PM Ticket #16007 (test) closed by
- not a bug
- 3:55 PM Ticket #16011 (using Schol-AR tool, failure to create an augmentation for my project) created by
- […] [[Image(...)]]
- 3:55 PM Ticket #16010 (QTextHtmlParser::applyAttributes: Unknown color name '{link}') created by
- […] [[Image(...)]] […]
- 3:49 PM Ticket #16009 (Qt fatal error: Failed to initialize graphics backend for OpenG) created by
- […]
- 2:16 PM Ticket #16008 (test) created by
- […]
- 2:14 PM Ticket #16007 (test) created by
- […]
- 12:02 PM Ticket #16001 (Selection history holding reference to dead PseudobondGroup) closed by
- fixed: Fixed. Selection demotion and promotion for pseudobonds failed to …
- 11:40 AM Ticket #16005 (Graphics crash, macOS 14.6.1, Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:38 AM Ticket #16003 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt crash in displayConfigFinalizedProc connecting or disconnecting …
- 11:30 AM Ticket #15988 (Tried to add model but parent does not exist) closed by
- nonchimerax: ChimeraX could not open your session file. Probably you denied …
- 10:33 AM Ticket #16002 (Crash reading .cif file) closed by
- can't reproduce: Need the data to reproduce.
- 9:12 AM Ticket #16004 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 8:55 AM Ticket #16006 (Remote control crash) created by
- […]
- 8:49 AM Ticket #15999 (Crash in garbage collection) closed by
- duplicate
- 7:00 AM Ticket #16005 (Graphics crash, macOS 14.6.1, Iris Plus Graphics 655) created by
- […]
- 5:48 AM Ticket #16004 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Sep 23, 2024:
- 5:49 PM Ticket #16003 (Crash on Mac waking from sleep) created by
- […]
- 3:47 PM Ticket #16002 (Crash reading .cif file) created by
- […]
- 1:41 PM Ticket #16001 (Selection history holding reference to dead PseudobondGroup) created by
- […]
- 1:31 PM Ticket #7054 (Deiconifying ChimeraX after help viewer deleted gives error) closed by
- fixed: 1.4 had this behavior, but starting with 1.5 the behavior is gone. In …
- 1:10 PM Ticket #16000 (RFE: Remote display on a compute cluster) created by
- […] im hitting the size limit of what datasets i can process and …
- 12:55 PM Ticket #15999 (Crash in garbage collection) created by
- […]
- 12:19 PM Ticket #15997 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties …
- 12:18 PM Ticket #15996 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties …
- 12:16 PM Ticket #15995 (Open TIFF stack: not a TIFF file) closed by
- can't reproduce: User opened prv2023_tomo2_corrected_segm_try2_thr1_flip_cut.tiff that …
- 11:23 AM Ticket #15998 (Cannot update file history) created by
- […] ChimeraX Save Issue.txt
- 10:37 AM Ticket #15994 (Crash in garbage collection) closed by
- duplicate
- 10:36 AM Ticket #15993 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:34 AM Ticket #15992 (Could not instantiate StructureSeq.structure) closed by
- duplicate: Very similar to #15991
- 10:23 AM Ticket #15989 (Crash saving PNG) closed by
- can't reproduce
- 9:35 AM Ticket #15997 (Crash on Mac waking from sleep) created by
- […]
- 7:42 AM Ticket #15996 (Crash on Mac waking from sleep) created by
- […]
- 7:11 AM Ticket #15995 (Open TIFF stack: not a TIFF file) created by
- […]
- 6:39 AM Ticket #15994 (Crash in garbage collection) created by
- […]
Sep 22, 2024:
- 9:56 PM Ticket #15993 (MemoryError opening mmCIF files) created by
- […]
- 7:58 PM Ticket #15992 (Could not instantiate StructureSeq.structure) created by
- […]
- 7:53 PM Ticket #15991 (Could not instantiate StructureSeq.structure) created by
- […]
Sep 21, 2024:
- 8:33 AM Ticket #15990 (SEQCROW: open XYZ: invalid literal for int()) created by
- […]
- 12:05 AM Ticket #15986 (The X11 connection broke) closed by
- limitation: Sometimes the graphics driver crashes taking the X11 server with it.
Sep 20, 2024:
- 6:20 PM Ticket #15422 (Want render by attribute GUI to show last used colors and values) closed by
- fixed: Fix: …
- 1:53 PM Ticket #15989 (Crash saving PNG) created by
- […]
- 1:07 PM Ticket #15988 (Tried to add model but parent does not exist) created by
- […]
- 11:47 AM Ticket #15421 (Render by attribute GUI changes color bar values when it should not) closed by
- fixed: Fix: …
- 10:40 AM Ticket #15966 (Installation on Windows Arm64) closed by
- fixed: Your welcome! Glad to hear it worked.
- 9:10 AM Ticket #15985 (Crash in garbage collection) closed by
- duplicate
- 9:08 AM Ticket #15984 (User can't write into their own folder) closed by
- not a bug
- 9:04 AM Ticket #15983 (Cannot open PDB file for writing) closed by
- can't reproduce: Version 1.0; this throws IOError nowadays
- 8:53 AM Ticket #15987 (Possible displayed / visible selectors) created by
- […]
- 8:27 AM Ticket #15986 (The X11 connection broke) created by
- […]
- 4:18 AM Ticket #15985 (Crash in garbage collection) created by
- […]
- 1:31 AM Ticket #15984 (User can't write into their own folder) created by
- […]
Sep 19, 2024:
- 11:03 PM Ticket #15983 (Cannot open PDB file for writing) created by
- […]
- 4:15 PM 2024-9-19 edited by
- (diff)
- 3:59 PM Ticket #15981 (Crash on display change, Mac, Qt 6.6) closed by
- duplicate: Crash in Mac Qt 6.6 in _NSViewHierarchyDidChangeBackingProperties …
- 3:30 PM Ticket #15977 (Problems with maps in sessions) closed by
- not a bug: ChimeraX sessions include a file path to map (.mrc) files when the …
- 3:23 PM Ticket #15975 (Multiple OpenGL errors) closed by
- nonchimerax: ChimeraX is giving graphics errors because your Intel graphics driver …
- 3:20 PM Ticket #15973 (glDrawBuffer: invalid operation, Linux) closed by
- can't reproduce: This OpenGL error has been reported dozens of times always on Linux. …
- 3:18 PM Ticket #15972 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt 6.6 in _NSViewHierarchyDidChangeBackingProperties, …
- 3:11 PM Ticket #15979 (Slight bug in ChimeraX) closed by
- duplicate: Was addressed on chimerax-users list
- 3:00 PM Ticket #15978 (Save mmCIF: 'Residue' object has no attribute 'display') closed by
- duplicate: Hi Disha, You submitted this exact same bug 4 weeks ago, and I …
- 3:00 PM Ticket #15982 (Crash disconnecting hdmi projector, Mac, Qt 6.7.2) created by
- […]
- 2:52 PM Ticket #15976 (Crash in garbage collection) closed by
- duplicate
- 10:59 AM Ticket #15981 (Crash on display change, Mac, Qt 6.6) created by
- […]
- 7:47 AM Ticket #15980 (Render by Attribute: 'MarkedHistogram' object has no attribute '_min_val') created by
- […]
- 6:12 AM Ticket #15979 (Slight bug in ChimeraX) created by
- […]
- 6:05 AM Ticket #15978 (Save mmCIF: 'Residue' object has no attribute 'display') created by
- […]
- 5:51 AM Ticket #15977 (Problems with maps in sessions) created by
- […]
- 4:47 AM Ticket #15976 (Crash in garbage collection) created by
- […]
- 4:44 AM Ticket #15975 (Multiple OpenGL errors) created by
- […]
- 4:06 AM Ticket #15974 (OpenCommands: name 'apply_to_models' is not defined) created by
- […] zn.co-rohf-svpd.out
- 1:07 AM Ticket #15973 (glDrawBuffer: invalid operation, Linux) created by
- […]
Sep 18, 2024:
- 8:43 PM Ticket #15972 (Crash on Mac waking from sleep) created by
- […]
- 8:17 PM 2024-9-19 edited by
- (diff)
- 6:57 PM Ticket #15971 (nuc slab positions miscalculated?) created by
- Image and session attached. When I open the same structure twice and …
- 5:49 PM Ticket #15967 (altloc error after deleting hydrogens) closed by
- fixed: Fix: …
- 3:10 PM Ticket #15964 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Crash in Apple's Intel graphics driver.
- 3:08 PM Ticket #15963 (Graphics crash, macOS 14.0, M2 GPU) closed by
- nonchimerax: Crash in Apple's M2 GPU graphics driver in glBufferSubData() …
- 3:04 PM Ticket #15962 (GLTF: KeyError: 'bufferView') closed by
- limitation: The user tried to open GLTF file which probably contains sparse …
- 1:08 PM Ticket #15970 (CliX: operand type(s) for |: 'type' and 'NoneType') closed by
- duplicate: Duplicate of #15969
- 12:36 PM Ticket #15970 (CliX: operand type(s) for |: 'type' and 'NoneType') created by
- […] error_clix.txt
- 12:34 PM Ticket #15969 (CliX: unsupported operand type(s) for |: 'type' and 'NoneType') created by
- […]
- 12:03 PM Ticket #15644 (Bundle builder should tell cython correct deployment target by setting ...) closed by
- fixed: Fixed in …
- 11:35 AM Ticket #15968 (Cross-compile for arm64 on Windows) created by
- 11:34 AM Ticket #15967 (altloc error after deleting hydrogens) created by
- […]
- 11:24 AM Ticket #15965 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:13 AM Ticket #15961 (Crash showing error dialog) closed by
- can't reproduce: If the traceback is to be believed, error reporting problem with …
- 9:59 AM Ticket #15959 (MemoryError restoring session) closed by
- limitation: Looks like they were probably restoring a trajectory. I'm surprised …
- 9:53 AM Ticket #15958 (Segmentations: self.view.drawing.parent is None) closed by
- duplicate: Duplicate of #15957
- 9:48 AM Ticket #15956 (ViewDockX: cannot convert float infinity to integer) closed by
- duplicate: Hi Mojgan, Thanks for reporting this problem. It was fixed on August …
- 8:59 AM Ticket #15966 (Installation on Windows Arm64) created by
- I recently started using one of the newer Arm64 based windows PCs and …
- 7:41 AM Ticket #15965 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:21 AM Ticket #15964 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) created by
- […]
- 7:01 AM Ticket #15963 (Graphics crash, macOS 14.0, M2 GPU) created by
- […]
- 6:46 AM Ticket #15962 (GLTF: KeyError: 'bufferView') created by
- […]
- 2:51 AM Ticket #15961 (Crash showing error dialog) created by
- […]
- 1:36 AM Ticket #15960 (ChimeraX toolbar missing) created by
- […]
- 12:53 AM Ticket #15959 (MemoryError restoring session) created by
- […]
Sep 17, 2024:
- 4:58 PM Ticket #15958 (Segmentations: self.view.drawing.parent is None) created by
- […]
- 4:58 PM Ticket #15957 (Segmentations: self.view.drawing.parent is None) created by
- […]
- 2:58 PM Dev2024-9-23 created by
- 2:55 PM 2024-9-19 created by
- 2:54 PM DeveloperMeetings edited by
- (diff)
- 2:04 PM Ticket #15956 (ViewDockX: cannot convert float infinity to integer) created by
- […]
- 1:39 PM ChangeLog edited by
- (diff)
- 11:18 AM Ticket #15954 (Altloc change doesn't update ribbon) closed by
- fixed: Fix: …
- 10:18 AM Ticket #15953 (Keyboard interrupt during restoration of map data) closed by
- can't reproduce: User typed ctrl-C at shell where ChimeraX was run on Linux during a …
- 9:25 AM Ticket #15955 (H-bonds: acc_phi_psi() number of arguments) closed by
- not a bug: Hi Heather, This problem typically occurs when the bond connectivity …
- 8:59 AM Ticket #15955 (H-bonds: acc_phi_psi() number of arguments) created by
- […]
- 7:35 AM Ticket #15954 (Altloc change doesn't update ribbon) created by
- […]
- 5:37 AM Ticket #15953 (Keyboard interrupt during restoration of map data) created by
- […]
- 3:53 AM Ticket #15952 (Blast results tool_window is None) created by
- […]
Sep 16, 2024:
- 4:33 PM Ticket #9404 ('center' arg when opening small molecules) closed by
- fixed: Okay, there is now a generic 'center' arg to the open command that …
- 3:49 PM Dev2024-9-16 edited by
- (diff)
- 2:53 PM Dev2024-9-16 edited by
- (diff)
- 10:58 AM Ticket #15951 (Cannot create temp save file) closed by
- can't reproduce
- 10:37 AM Ticket #15950 (Crash in event loop) closed by
- can't reproduce
- 6:50 AM Ticket #15951 (Cannot create temp save file) created by
- […]
- 4:35 AM Ticket #15950 (Crash in event loop) created by
- […]
Sep 13, 2024:
- 5:56 PM Dev2024-9-16 edited by
- (diff)
- 5:49 PM ChangeLog edited by
- (diff)
- 12:22 PM Ticket #15949 (Add molmap option to create a cube shaped map) closed by
- fixed: Done. Added "cube" option to molmap command (default false). If cube …
- 11:16 AM Ticket #15949 (Add molmap option to create a cube shaped map) created by
- From: Oliver Clarke via ChimeraX-users Subject: [chimerax-users] …
- 11:02 AM Ticket #15948 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in _NSViewHierarchyDidChangeBackingProperties. …
- 11:01 AM Ticket #15947 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in displayConfigFinalizedProc. Probably connecting …
- 11:00 AM Ticket #15945 (Crash on Mac waking from sleep) closed by
- duplicate: Mac Qt 6.6 crash in displayConfigFinalizedProc. Probably connecting …
- 10:58 AM Ticket #15943 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Crash in Apple Intel graphics driver. Unfortunately Apple's OpenGL …
- 10:44 AM Ticket #15937 (Generated CRYST1 record mis-formatted) closed by
- nonchimerax
- 10:40 AM Dev2024-9-16 edited by
- (diff)
- 10:40 AM Dev2024-9-16 edited by
- (diff)
- 9:11 AM Ticket #15941 (Crash reading mmCIF) closed by
- can't reproduce
- 9:09 AM Ticket #15940 (QObject::~QObject: Timers cannot be stopped from another thread) closed by
- can't reproduce: Crash was in 1.8, and hard to say what the cause is without knowing …
- 7:36 AM Ticket #15948 (Crash on Mac waking from sleep) created by
- […]
- 1:21 AM Ticket #15947 (Crash on Mac waking from sleep) created by
- […]
Sep 12, 2024:
- 8:41 PM Ticket #15946 (CCP4MTZfile: open_read - File missing or corrupted) created by
- […]
- 5:36 PM Ticket #15945 (Crash on Mac waking from sleep) created by
- […]
- 4:19 PM Ticket #15930 (Tutorial sample code unavailable) closed by
- fixed: The script needed to set the HOME environment variable and flush the …
- 3:56 PM Ticket #15899 (Hidden vertices in GLB output, and GLB nodes not centered at (0,0,0)) closed by
- fixed: Fixed. Elaine could you document the new save gltf option …
- 3:02 PM Ticket #15944 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:03 PM Ticket #15943 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) created by
- […]
- 1:32 PM Ticket #15942 (Restore session: LZ4F_decompress failed with code: ...) created by
- […]
- 11:44 AM 2024-9-12 edited by
- (diff)
- 11:29 AM Ticket #15941 (Crash reading mmCIF) created by
- […]
- 11:11 AM Ticket #15940 (QObject::~QObject: Timers cannot be stopped from another thread) created by
- […]
- 11:05 AM Ticket #15935 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt 6.6 in _NSViewHierarchyDidChangeBackingProperties. …
- 11:03 AM Ticket #15931 (Crash on Mac waking from sleep) closed by
- duplicate: Crash in Mac Qt 6.6 in displayConfigFinalizedProc. Probably …
- 10:32 AM Ticket #15938 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by
- duplicate: Duplicate of #15753
- 10:24 AM Ticket #15936 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 10:21 AM Ticket #15933 (Crash in garbage collection) closed by
- duplicate
- 10:20 AM Ticket #15932 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce: Would need the PDB in order to work on this.
- 9:04 AM Ticket #15939 (SEQCROW: reading .log: list index out of range) created by
- […]
- 8:51 AM Ticket #15938 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by
- […]
- 5:22 AM Ticket #15937 (Generated CRYST1 record mis-formatted) created by
- […] 5ewj_ab.pdb
- 5:21 AM Ticket #15936 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 4:34 AM Ticket #15935 (Crash on Mac waking from sleep) created by
- […]
Sep 11, 2024:
- 6:36 PM Ticket #15934 (Saved GLTF is shifted relative to original model position) closed by
- fixed: Fixed. The ChimeraX position matrix was being applied both to the …
- 5:29 PM Ticket #15934 (Saved GLTF is shifted relative to original model position) created by
- […]
- 4:24 PM Ticket #10356 (DICOM: bits_allocated is None) closed by
- can't reproduce: User never attached their files for testing
- 3:33 PM Ticket #15926 (BLAST web service is not returning results) closed by
- fixed: The workers died; I restarted them. We've got to figure out how they …
- 2:54 PM Ticket #15918 (ChimeraX 1.8 on macOS Sequoia) closed by
- not a bug
- 12:26 PM Ticket #15933 (Crash in garbage collection) created by
- […]
- 12:20 PM Ticket #15932 (UnicodeDecodeError reading PDB file) created by
- […]
- 11:43 AM Ticket #15931 (Crash on Mac waking from sleep) created by
- […]
- 11:23 AM Ticket #15928 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by
- duplicate: Duplicate of #15753
- 11:12 AM Ticket #15897 (Core include files not found) reopened by
- 9:55 AM Ticket #15930 (Tutorial sample code unavailable) created by
- Dear Chimera Developers, it seems the example source code download …
- 5:10 AM Ticket #15929 (Flatpak as extension-building platform) created by
- […]
- 4:10 AM Ticket #15928 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by
- […]
- 1:26 AM Ticket #15927 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Sep 10, 2024:
- 6:55 PM Ticket #15926 (BLAST web service is not returning results) created by
- […]
- 4:24 PM Ticket #15925 (Crash in CrBrowserMain) closed by
- can't reproduce
- 3:07 PM Ticket #15925 (Crash in CrBrowserMain) created by
- […]
- 2:47 PM Ticket #15924 (Internal Server Error contacting toolshed) created by
- […]
- 2:31 PM Ticket #15923 (volume splitbyzone: ArrayMemoryError) closed by
- limitation: Ran out of memory making copies of a 520 by 520 by 520 map splitting …
- 2:24 PM Ticket #15922 (Error contacting the toolshed at startup?) closed by
- can't reproduce: It would be nice if the service being accessed were identified …
- 1:49 PM Ticket #15923 (volume splitbyzone: ArrayMemoryError) created by
- […]
- 1:46 PM Ticket #15922 (Error contacting the toolshed at startup?) created by
- […]
- 11:57 AM Ticket #15920 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:54 AM Dev2024-9-16 created by
- 11:54 AM 2024-9-12 created by
- 11:52 AM DeveloperMeetings edited by
- (diff)
- 11:17 AM Ticket #15917 (Crash in glBufferSubData after "volume level") closed by
- duplicate: Crash in Apple's graphics driver showing large map, M2 Max GPU. I …
- 11:13 AM Ticket #15919 (Crash on Mac waking from sleep) closed by
- duplicate: Qt 6.6 crash in displayConfigFinalizedProc, either from connecting or …
- 10:35 AM Ticket #15916 (sym: tuple index out of range) closed by
- fixed: Your sym command that produces the error has the wrong syntax sym …
- 8:37 AM Ticket #15921 (Could not instantiate StructureSeq.structure) created by
- […]
- 7:31 AM Ticket #15920 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 655) created by
- […]
- 7:14 AM Ticket #15919 (Crash on Mac waking from sleep) created by
- […]
- 6:03 AM Ticket #15918 (ChimeraX 1.8 on macOS Sequoia) created by
- […] [[Image(...)]] [[Image(...)]] …
Sep 9, 2024:
- 10:02 PM Ticket #15917 (Crash in glBufferSubData after "volume level") created by
- […]
- 5:43 PM Ticket #15916 (sym: tuple index out of range) created by
- […]
- 4:44 PM Ticket #15897 (Core include files not found) closed by
-
not a bug: You specify your core dependency with
~=1.8.0.~=in PEP440 is the … - 4:39 PM Ticket #5952 (Render By Attribute tool) closed by
- fixed: Added last missing features of the tool (linear vs. logarithmic …
- 4:09 PM Dev2024-9-9 edited by
- (diff)
- 2:23 PM Ticket #15906 (ui view fourup: ZeroDivisionError) closed by
- duplicate: Should be fixed in any recent daily build.
- 2:02 PM Ticket #15915 (GL.glClear: access violation) closed by
- can't reproduce: Probably graphics driver problem. Error in glClear() drawing status …
- 2:00 PM Dev2024-9-9 edited by
- (diff)
- 1:57 PM Ticket #15914 (Crash on Mac waking from sleep) closed by
- duplicate: Qt 6.6 crash in displayConfigFinalizedProc() either connecting or …
- 1:52 PM Ticket #15913 (Update atomic bundle) closed by
- not a bug: Hi Chen, The Atomic bundle is shipped as part of the ChimeraX app, so …
- 12:50 PM Ticket #15915 (GL.glClear: access violation) created by
- […]
- 12:12 PM Ticket #15910 (Crash on Mac waking from sleep) closed by
- duplicate: Unfortunately a bug in the Qt window toolkit used by ChimeraX …
- 12:11 PM Ticket #15912 (Generic chooser widget: argument of type 'NoneType' is not iterable) closed by
- duplicate: Hi Baturay, Thanks for reporting this problem. It was fixed in the …
- 12:09 PM Ticket #15909 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:07 PM Ticket #15905 (Crash in glBufferSubData) closed by
- duplicate: Same problem as your previous crash (#15903), Mac graphics driver …
- 12:01 PM Ticket #15903 (Crash in glBufferSubData) closed by
- nonchimerax: ChimeraX crashed in the Mac OpenGL driver in gldBufferSubData(). I …
- 11:52 AM Ticket #15902 (glDrawBuffer: invalid operation) closed by
- duplicate: Never figured this OpenGL but out, only happens on Linux. Possibly …
- 11:51 AM Ticket #15901 (Crash on Mac waking from sleep) closed by
- duplicate: Unfortunately a bug in the Qt window toolkit used by ChimeraX …
- 11:39 AM Ticket #15914 (Crash on Mac waking from sleep) created by
- […]
- 11:30 AM Ticket #15908 (No error reported) closed by
- not a bug
- 11:29 AM Ticket #15907 (No error reported) closed by
- not a bug
- 11:16 AM Ticket #15900 (colored stl file for 3d printing) closed by
- duplicate: Asked and answered on the chimerax-users list
- 10:38 AM Ticket #15913 (Update atomic bundle) created by
- […]
- 4:52 AM Ticket #15912 (Generic chooser widget: argument of type 'NoneType' is not iterable) created by
- […]
- 2:42 AM Ticket #15911 (Color-picker text fields truncated on Windows) created by
- […] Screenshot 2024-09-09 103941.png
- 12:48 AM Ticket #15910 (Crash on Mac waking from sleep) created by
- […]
Sep 8, 2024:
- 7:50 PM Ticket #15909 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics) created by
- […]
- 7:07 PM Ticket #15908 (No error reported) created by
- […]
- 7:07 PM Ticket #15907 (No error reported) created by
- […]
- 12:29 AM Ticket #10035 (Add tests to DICOM) closed by
- fixed: Added tests for opening DICOM files in …
Note:
See TracTimeline
for information about the timeline view.
