![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 13 months ago
Closed 13 months ago
#15963 closed defect (nonchimerax)
Graphics crash, macOS 14.0, M2 GPU
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.0-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x00000001df8f1300 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 2744 in update_buffer_data
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1912 in update_buffers
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1924 in activate_bindings
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 814 in _draw_geometry
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 791 in draw_self
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 780 in draw
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1567 in _draw_multiple
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1560 in
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 1289 in draw_transparent
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1559 in draw_transparent
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 265 in _draw_scene
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 188 in draw
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 84 in draw_new_frame
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 150 in _redraw_timer_callback
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imagingmath (total: 48)
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"procRole" : "Foreground",
"version" : 2,
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"codeSigningMonitor" : 1,
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"procExitAbsTime" : 4402240214010,
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"codeSigningTeamID" : "LWV8X224YF",
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"exception" : {"codes":"0x0000000000000002, 0x000000013d0ec000","rawCodes":[2,5319344128],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_PROTECTION_FAILURE at 0x000000013d0ec000"},
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"vmSummary" : "ReadOnly portion of Libraries: Total=1.8G resident=0K(0%) swapped_out_or_unallocated=1.8G(100%)\nWritable regions: Total=18.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=18.9G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 752K 35 \nColorSync 640K 30 \nCoreAnimation 3120K 165 \nCoreGraphics 48K 3 \nCoreUI image data 5744K 60 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 13.5G 211 \nMALLOC guard page 384K 24 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 560K 35 \nStack 168.8M 36 \nStack Guard 56.0M 1 \nVM_ALLOCATE 5.1G 160 \nVM_ALLOCATE (reserved) 160.0M 3 reserved VM address space (unallocated)\n__AUTH 2985K 427 \n__AUTH_CONST 34.1M 658 \n__CTF 824 1 \n__DATA 25.3M 793 \n__DATA_CONST 43.4M 804 \n__DATA_DIRTY 2022K 238 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 915.0M 141 \n__OBJC_RO 70.6M 1 \n__OBJC_RW 2153K 1 \n__TEXT 966.8M 821 \ndyld private memory 464K 4 \nmapped file 219.2M 68 \nshared memory 3168K 25 \n=========== ======= ======= \nTOTAL 21.2G 4760 \nTOTAL, minus reserved VM space 21.0G 4760 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "f9f86e8595c743e50b1b168bdc64873a73e121a4",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "62fe74515312cd4599bd3c80",
"factorPackIds" : {
"MYRIAD_BOOSTS" : "62fe74805312cd4599bd3c81"
},
"deploymentId" : 240000006
},
{
"rolloutId" : "60f8ddccefea4203d95cbeef",
"factorPackIds" : {
"NETWORK_SERVICE_PROXY_CONFIG_UPDATE" : "6401414cc679dd6bc5828183"
},
"deploymentId" : 240000025
}
],
"experiments" : [
{
"treatmentId" : "c47ab4cc-c9c3-4b5d-a87c-e2433ce02597",
"experimentId" : "6639bc6ba73d460582162323",
"deploymentId" : 400000006
},
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
}
}
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/terrosus/Downloads/cryosparc_P17_J639_class_02_00090_volume.mrc
Opened cryosparc_P17_J639_class_02_00090_volume.mrc as #1, grid size 80,80,80,
pixel 6.38, shown at level 0.147, step 1, values float32
> volume #1 level 0.07892
> volume #1 level 0.1389
> open /Users/terrosus/Downloads/cryosparc_P17_J639__mask_solvent.mrc
Opened cryosparc_P17_J639__mask_solvent.mrc as #2, grid size 80,80,80, pixel
6.38, shown at level 1, step 1, values float32
> volume #2 level 0.298
> volume #2 level 0.005386
> volume #1 level 0.08749
> volume #1 level 0.1132
> volume #1 level 0.05752
> volume #1 level 0.1217
> open /Users/terrosus/Downloads/cryosparc_P17_J783_001_volume_map_sharp.mrc
Opened cryosparc_P17_J783_001_volume_map_sharp.mrc as #3, grid size
540,540,540, pixel 0.729, shown at level 0.00851, step 4, values float32
> volume #3 step 1
> volume #3 level 0.016
> set bgColor white
> transparency #1.1#3.1 50
> select add #3
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,137.71,0,1,0,83.183,0,0,1,-157.95
> volume #3 level 0.01196
> view matrix models #3,1,0,0,137.23,0,1,0,96.98,0,0,1,-163.41
> open /Users/terrosus/Downloads/cryosparc_P17_J768_010_volume_map_sharp.mrc
Opened cryosparc_P17_J768_010_volume_map_sharp.mrc as #4, grid size
540,540,540, pixel 0.729, shown at level 0.0405, step 4, values float32
> volume #1 level 0.2801
> ui mousemode right select
> select #4
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,44.96,0,1,0,76.754,0,0,1,31.339
> view matrix models #4,1,0,0,63.052,0,1,0,58.558,0,0,1,60.817
> ui tool show "Fit in Map"
> fitmap #1 inMap #4
Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map
cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points
correlation = 0.4957, correlation about mean = 0.2263, overlap = 52.18
steps = 216, shift = 4.73, angle = 4.95 degrees
Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to
cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
0.99627869 -0.05602388 -0.06549890 -33.33157042
0.05587478 0.99842934 -0.00410747 -70.23388492
0.06562614 0.00043245 0.99784419 -79.07207416
Axis 0.02632744 -0.76040782 0.64891202
Axis point 1197.96211184 0.00000000 -577.43921783
Rotation angle (degrees) 4.94619497
Shift along axis 1.21804072
> fitmap #1 inMap #4
Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map
cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points
correlation = 0.4958, correlation about mean = 0.2265, overlap = 52.18
steps = 40, shift = 0.0122, angle = 0.014 degrees
Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to
cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
0.99625802 -0.05614699 -0.06570749 -33.25704912
0.05599562 0.99842241 -0.00414449 -70.25450380
0.06583653 0.00044965 0.99783032 -79.11742621
Axis 0.02656822 -0.76072726 0.64852769
Axis point 1195.10965295 0.00000000 -574.70413617
Rotation angle (degrees) 4.95995027
Shift along axis 1.25109422
> fitmap #1 inMap #4
Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map
cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points
correlation = 0.4958, correlation about mean = 0.2265, overlap = 52.18
steps = 44, shift = 0.00506, angle = 0.00589 degrees
Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to
cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
0.99624936 -0.05619447 -0.06579814 -33.22146359
0.05604260 0.99841974 -0.00415318 -70.26272895
0.06592755 0.00045010 0.99782431 -79.14000535
Axis 0.02659034 -0.76089908 0.64832518
Axis point 1193.98249003 0.00000000 -573.47303145
Rotation angle (degrees) 4.96569318
Shift along axis 1.27101797
> fitmap #1 inMap #4
Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map
cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points
correlation = 0.4958, correlation about mean = 0.2267, overlap = 52.18
steps = 40, shift = 0.0132, angle = 0.0016 degrees
Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to
cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
0.99625007 -0.05620269 -0.06578039 -33.23426141
0.05604950 0.99841927 -0.00417351 -70.26180529
0.06591097 0.00047090 0.99782540 -79.13122033
Axis 0.02683024 -0.76076763 0.64846955
Axis point 1193.91507003 0.00000000 -573.80051897
Rotation angle (degrees) 4.96525550
Shift along axis 1.24703731
> view matrix models #4,1,0,0,56.717,0,1,0,49.748,0,0,1,69.934
> fitmap #1 inMap #4
Fit map cryosparc_P17_J639_class_02_00090_volume.mrc in map
cryosparc_P17_J768_010_volume_map_sharp.mrc using 3489 points
correlation = 0.4733, correlation about mean = 0.2056, overlap = 48.19
steps = 132, shift = 8.97, angle = 2.32 degrees
Position of cryosparc_P17_J639_class_02_00090_volume.mrc (#1) relative to
cryosparc_P17_J768_010_volume_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
0.99238898 -0.06621791 -0.10382342 -15.90186591
0.06693986 0.99775094 0.00348087 -74.00733385
0.10335942 -0.01040430 0.99458965 -91.72995921
Axis -0.05628933 -0.83990230 0.53981075
Axis point 946.91878373 0.00000000 -215.23933558
Rotation angle (degrees) 7.08475656
Shift along axis 13.53721745
> volume #4 step 1
> volume #4 level 0.05856
> volume #1 level 0.1013
> select subtract #4
Nothing selected
> select #1
2 models selected
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-48.934,0.06694,0.99775,0.0034809,-46.976,0.10336,-0.010404,0.99459,70.181
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-59.446,0.06694,0.99775,0.0034809,-40.232,0.10336,-0.010404,0.99459,92.561
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-73.197,0.06694,0.99775,0.0034809,-7.8846,0.10336,-0.010404,0.99459,121.31
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-88.937,0.06694,0.99775,0.0034809,-18.304,0.10336,-0.010404,0.99459,135.75
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-55.251,0.06694,0.99775,0.0034809,-14.085,0.10336,-0.010404,0.99459,145.1
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-47.721,0.06694,0.99775,0.0034809,-21.395,0.10336,-0.010404,0.99459,130.67
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-26.179,0.06694,0.99775,0.0034809,80.848,0.10336,-0.010404,0.99459,103.54
> open /Users/terrosus/Downloads/cryosparc_P17_J784_mask.mrc
Opened cryosparc_P17_J784_mask.mrc as #5, grid size 540,540,540, pixel 0.729,
shown at level 0.0506, step 4, values float32
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-29.032,0.06694,0.99775,0.0034809,96.563,0.10336,-0.010404,0.99459,107.58
> hide #!4 models
> show #!4 models
> hide #!1 models
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-29.405,0.06694,0.99775,0.0034809,88.31,0.10336,-0.010404,0.99459,107.96
> view matrix models
> #1,0.99239,-0.066218,-0.10382,-23.66,0.06694,0.99775,0.0034809,200.95,0.10336,-0.010404,0.99459,102.03
> select #5
2 models selected
> select subtract #1
2 models selected
> select add #4
4 models selected
> select subtract #4
2 models selected
> select add #5
2 models selected
> select subtract #5
Nothing selected
> select add #5
2 models selected
> view matrix models #5,1,0,0,-120.37,0,1,0,57.79,0,0,1,201.9
> view matrix models #5,1,0,0,-120.33,0,1,0,45.54,0,0,1,198.87
> view matrix models #5,1,0,0,-96.396,0,1,0,35.082,0,0,1,196.42
> view matrix models #5,1,0,0,-100.05,0,1,0,36.198,0,0,1,178.98
> vop resample #5 on grid #4
> volume resample #5 onGrid grid #4
Invalid "onGrid" argument: invalid density maps specifier
> vop resample #5 ongrid #4
Opened cryosparc_P17_J784_mask.mrc resampled as #6, grid size 540,540,540,
pixel 0.729, shown at step 1, values float32
> volume #6 level 0
> view matrix models #5,1,0,0,-123.76,0,1,0,70.931,0,0,1,204.08
> volume #4 level 0.07287
> volume #4 level 0
> view matrix models #5,1,0,0,-114.2,0,1,0,-60.512,0,0,1,158.15
> view matrix models #5,1,0,0,-121.43,0,1,0,-102.24,0,0,1,115.02
> view matrix models #5,1,0,0,-124.18,0,1,0,-172.18,0,0,1,78.592
> view matrix models #5,1,0,0,-125.69,0,1,0,-208.21,0,0,1,52.89
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 86
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,7
Model Number: Z16R000VAFN/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 10151.1.1
OS Loader Version: 10151.1.1
Software:
System Software Overview:
System Version: macOS 14.0 (23A344)
Kernel Version: Darwin 23.0.0
Time since boot: 12 jours et 55 minutes
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2723D:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 13 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in glBufferSubData |
comment:2 by , 13 months ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Crash in glBufferSubData → Graphics crash, macOS 14.0, M2 GPU |
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Crash in Apple's M2 GPU graphics driver in glBufferSubData() apparently showing large surfaces of 540x540x540 map.